Query 034030
Match_columns 105
No_of_seqs 102 out of 111
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6x_A GPR, green-light absorb 46.3 30 0.001 25.8 4.7 28 55-82 38-65 (243)
2 2l9d_A Uncharacterized protein 39.2 7.1 0.00024 26.7 0.2 14 27-40 23-36 (108)
3 3qap_A Sensory rhodopsin-2; ph 38.0 93 0.0032 22.9 6.3 34 55-91 30-63 (239)
4 3ddl_A Xanthorhodopsin; carote 31.3 97 0.0033 23.4 5.6 27 55-81 42-68 (273)
5 3am6_A Rhodopsin-2, AR2; seven 29.7 1.4E+02 0.0049 21.7 6.1 28 55-82 35-62 (229)
6 1m0k_A BR, bacteriorhodopsin; 26.4 95 0.0032 23.3 4.7 28 56-83 50-77 (262)
7 2ei4_A AR 2, archaerhodopsin-2 25.4 1.4E+02 0.0046 22.2 5.4 53 31-83 13-68 (253)
8 2jaf_A Halorhodopsin, HR; chro 23.9 1.2E+02 0.0042 22.9 5.0 27 56-82 57-83 (274)
9 1xio_A Anabaena sensory rhodop 20.8 2.7E+02 0.0091 20.8 6.3 33 56-91 31-63 (261)
10 3rlb_A THIT; S-component, ECF 19.0 1.1E+02 0.0038 22.1 3.6 39 48-87 106-144 (192)
No 1
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=46.34 E-value=30 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 034030 55 PGLKGPSMVTGGLIGLMGGFMYAYQNSA 82 (105)
Q Consensus 55 ~~~~~p~m~~~~~iG~~gGfl~ayqrS~ 82 (105)
+.+.+....+++++-+++.+.+.++++-
T Consensus 38 ~~~~R~~~~~~~lit~iaa~~Yf~Ma~~ 65 (243)
T 2l6x_A 38 SAKWKTSLTVSGLVTGIAFWHYMYMRGV 65 (243)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHh
Confidence 4456677888899999999999988876
No 2
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=39.21 E-value=7.1 Score=26.71 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=10.1
Q ss_pred hccChhHHHHHHHH
Q 034030 27 GNFNTLDYLRFSSI 40 (105)
Q Consensus 27 ~nfR~sDy~~~a~~ 40 (105)
+=||||||+-=...
T Consensus 23 k~FRPSDWAERL~G 36 (108)
T 2l9d_A 23 KPFRPSDWVDRMCS 36 (108)
T ss_dssp CBCSCTTHHHHHHH
T ss_pred CCcCCchHHHHHhh
Confidence 56999999754443
No 3
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas pharaonis} SCOP: f.13.1.1 PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A* 2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Probab=38.00 E-value=93 Score=22.94 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=27.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 034030 55 PGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN 91 (105)
Q Consensus 55 ~~~~~p~m~~~~~iG~~gGfl~ayqrS~~Rl~G~~EN 91 (105)
+.+.+....+++++.+++.+.+.+.+|-. ||.++
T Consensus 30 ~~~~R~~~~v~~lit~iaai~Y~~Ma~~~---G~~~~ 63 (239)
T 3qap_A 30 GSGERRYYVTLVGISGIAAVAYVVMALGV---GWVPV 63 (239)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHcC---Ceeec
Confidence 44566778889999999999999999843 66664
No 4
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=31.33 E-value=97 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhh
Q 034030 55 PGLKGPSMVTGGLIGLMGGFMYAYQNS 81 (105)
Q Consensus 55 ~~~~~p~m~~~~~iG~~gGfl~ayqrS 81 (105)
+.+.+....+++++-+++.+.+.+.+|
T Consensus 42 ~~~~R~~~~v~~lit~IAai~Yf~Ma~ 68 (273)
T 3ddl_A 42 APKYRISMMVSALVVFIAGYHYFRITS 68 (273)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceehhhHHHHHHHHHHHHHHHHHHh
Confidence 445567788899999999999999998
No 5
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=29.66 E-value=1.4e+02 Score=21.71 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=21.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 034030 55 PGLKGPSMVTGGLIGLMGGFMYAYQNSA 82 (105)
Q Consensus 55 ~~~~~p~m~~~~~iG~~gGfl~ayqrS~ 82 (105)
+.+.+....+++++-+++...+.++++.
T Consensus 35 ~~~~r~~~~~~~lvt~iaa~~Y~~Ma~~ 62 (229)
T 3am6_A 35 PSELKSAYYINIAICTIAATAYYAMAVN 62 (229)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcceehhHHHHHHHHHHHHHHHHHHHc
Confidence 4456677888899999999999888864
No 6
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=26.38 E-value=95 Score=23.30 Aligned_cols=28 Identities=11% Similarity=-0.165 Sum_probs=22.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 034030 56 GLKGPSMVTGGLIGLMGGFMYAYQNSAG 83 (105)
Q Consensus 56 ~~~~p~m~~~~~iG~~gGfl~ayqrS~~ 83 (105)
.+.+....+++++-+++...+.+.++-.
T Consensus 50 ~~~R~~~~v~~lit~IAa~~Y~~Ma~~~ 77 (262)
T 1m0k_A 50 PDAKKFYAITTLVPAIAFTMYLSMLLGY 77 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHHcc
Confidence 3455667888999999999999988764
No 7
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal, bacterioruberin, proton pump, TRA protein; HET: GLC RET 22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A* 1uaz_A*
Probab=25.37 E-value=1.4e+02 Score=22.19 Aligned_cols=53 Identities=6% Similarity=-0.274 Sum_probs=32.0
Q ss_pred hhHHHHH--HHHHHHHHHHHHHhcc-CCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 034030 31 TLDYLRF--SSITGVSVVVGYLSGI-KPGLKGPSMVTGGLIGLMGGFMYAYQNSAG 83 (105)
Q Consensus 31 ~sDy~~~--a~~ta~~~~~~y~~~~-~~~~~~p~m~~~~~iG~~gGfl~ayqrS~~ 83 (105)
-||+.-. ++..++...+.++++. .+.+.+....+++++-++++..+.+.++-.
T Consensus 13 ~s~w~w~~~a~m~~atv~F~~~~~~~~~~~~R~~~~~~~lvt~iAa~~Y~~Ma~~~ 68 (253)
T 2ei4_A 13 ETLWLGIGTLLMLIGTFYFIARGWGVTDKEAREYYAITILVPGIASAAYLAMFFGI 68 (253)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHhhcCCCcceeehhHHHHHHHHHHHHHHHHHhcC
Confidence 4788433 3333322222333442 234455668888999999999999988753
No 8
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=23.93 E-value=1.2e+02 Score=22.92 Aligned_cols=27 Identities=19% Similarity=-0.087 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhc
Q 034030 56 GLKGPSMVTGGLIGLMGGFMYAYQNSA 82 (105)
Q Consensus 56 ~~~~p~m~~~~~iG~~gGfl~ayqrS~ 82 (105)
.+.+....+++++-+++...+.+.++-
T Consensus 57 ~~~R~~~~l~~lit~IAai~Yf~Ma~~ 83 (274)
T 2jaf_A 57 GRPRLIWGATLMIPLVSISSYLGLLSG 83 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcceehhHHHHHHHHHHHHHHHHHHHc
Confidence 345566888899999999999998874
No 9
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=20.75 E-value=2.7e+02 Score=20.78 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=22.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 034030 56 GLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN 91 (105)
Q Consensus 56 ~~~~p~m~~~~~iG~~gGfl~ayqrS~~Rl~G~~EN 91 (105)
.+.+....+++++-++++..+.+.++- .||.+.
T Consensus 31 ~~~R~~~~~~~lit~iAa~~Y~~Ma~~---~G~~~~ 63 (261)
T 1xio_A 31 GVPQYEYLVAMFIPIWSGLAYMAMAID---QGKVEA 63 (261)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred CcceeeehHHHHHHHHHHHHHHHHHhC---CCeeec
Confidence 346677888899999999999999884 567764
No 10
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=19.01 E-value=1.1e+02 Score=22.05 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=23.0
Q ss_pred HHHhccCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Q 034030 48 GYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMG 87 (105)
Q Consensus 48 ~y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayqrS~~Rl~G 87 (105)
|++.+.++++......+++++|.++.+++.+-... =|+|
T Consensus 106 G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~isgv-vff~ 144 (192)
T 3rlb_A 106 GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGI-IFWS 144 (192)
T ss_dssp GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCG
T ss_pred HhheeccccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45443322222344677888888888887776554 4443
Done!