Query 034030
Match_columns 105
No_of_seqs 102 out of 111
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 15:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e12a_ f.13.1.1 (A:) Halorhod 32.9 42 0.0031 22.9 5.5 52 32-83 9-61 (239)
2 d1h2sa_ f.13.1.1 (A:) Sensory 31.1 64 0.0046 21.7 6.2 41 48-91 23-63 (225)
3 d1xioa_ f.13.1.1 (A:) Sensory 22.5 1E+02 0.0074 20.4 6.3 27 55-81 30-56 (226)
4 d1f39a_ b.87.1.1 (A:) lambda r 21.7 11 0.00079 22.6 0.4 27 7-33 69-98 (101)
5 d2g5ca2 c.2.1.6 (A:30-200) Pre 19.9 30 0.0022 21.2 2.4 34 69-102 10-46 (171)
6 d1hyua4 c.47.1.2 (A:103-198) A 15.3 34 0.0024 19.6 1.6 19 86-104 52-70 (96)
7 d1lqla_ d.227.1.1 (A:) Hypothe 13.8 1.1E+02 0.0081 18.4 4.0 33 16-50 28-60 (141)
8 d2db7a1 a.273.1.1 (A:3-57) Hai 13.4 7.6 0.00056 22.1 -1.8 16 83-98 12-27 (55)
9 d1vlaa_ d.227.1.2 (A:) Hypothe 11.6 1.2E+02 0.0087 18.0 3.6 34 16-49 29-62 (144)
10 d1n9la_ d.110.3.6 (A:) Putativ 11.2 22 0.0016 20.2 -0.3 25 9-34 12-36 (109)
No 1
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=32.88 E-value=42 Score=22.94 Aligned_cols=52 Identities=15% Similarity=-0.021 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC-CCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 034030 32 LDYLRFSSITGVSVVVGYLSGIK-PGLKGPSMVTGGLIGLMGGFMYAYQNSAG 83 (105)
Q Consensus 32 sDy~~~a~~ta~~~~~~y~~~~~-~~~~~p~m~~~~~iG~~gGfl~ayqrS~~ 83 (105)
+.|...++..+++..+.+.++.. +.+.+..+.+++++-+++++.+.+..+..
T Consensus 9 slW~~~a~m~~a~~~f~~~~~~~~~~~~R~~~~l~~~I~~IA~~~Y~~Ma~~~ 61 (239)
T d1e12a_ 9 SLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGL 61 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444443333333334322 34456678888999999999988776643
No 2
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=31.09 E-value=64 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=25.1
Q ss_pred HHHhccCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 034030 48 GYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN 91 (105)
Q Consensus 48 ~y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayqrS~~Rl~G~~EN 91 (105)
.+..+..+...+....+.+.|-+++++.+.+.++- .||.++
T Consensus 23 ~~~~~~~~~~~r~~~~~~~~It~iAa~~Y~~m~~g---~g~~~~ 63 (225)
T d1h2sa_ 23 AWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALG---VGWVPV 63 (225)
T ss_dssp HHHTTTCCTTTHHHHHHHHHHHHHHHHHHHHHHTT---CSEECC
T ss_pred HHHHcCCCCccchhhHHHHHHHHHHHHHHHHHHhC---CCcccc
Confidence 34444444445555666777888888888877642 255554
No 3
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=22.50 E-value=1e+02 Score=20.40 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=19.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhh
Q 034030 55 PGLKGPSMVTGGLIGLMGGFMYAYQNS 81 (105)
Q Consensus 55 ~~~~~p~m~~~~~iG~~gGfl~ayqrS 81 (105)
+...+....++++|-+++++.+....+
T Consensus 30 ~~~~r~~~~~~~~I~~iA~~~Y~~ma~ 56 (226)
T d1xioa_ 30 RGVPQYEYLVAMFIPIWSGLAYMAMAI 56 (226)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 344556677888898888888776654
No 4
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=21.67 E-value=11 Score=22.55 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=18.7
Q ss_pred CCCCCCCCcccCCCCch---hhhhccChhH
Q 034030 7 ASEKPQYPVIDRNPPFT---AVVGNFNTLD 33 (105)
Q Consensus 7 ~~~~p~YPvId~dP~f~---rVv~nfR~sD 33 (105)
++.+|+||-|.-+..+. +|+..++|.|
T Consensus 69 ~s~N~~y~~i~~~~~~~IiG~Vv~s~~p~~ 98 (101)
T d1f39a_ 69 QPLNPQYPMIPCNESCSVVGKVIASQWPEE 98 (101)
T ss_dssp ECSSTTSCCEECSTTCEEEEEEEEEECCGG
T ss_pred EECCCCCCCCcCCCCcEEEEEEEEEECcHH
Confidence 46789999886555443 6777777765
No 5
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=19.86 E-value=30 Score=21.22 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=21.1
Q ss_pred HHHHHHHH-HHHhh--cccccccCCCHHHHHHhhhcc
Q 034030 69 GLMGGFMY-AYQNS--AGRLMGFFPNEGEVARYQKRG 102 (105)
Q Consensus 69 G~~gGfl~-ayqrS--~~Rl~G~~EN~rEv~ry~~~~ 102 (105)
|++|+-+. +..++ ..+++||..|+...++....|
T Consensus 10 G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~ 46 (171)
T d2g5ca2 10 GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG 46 (171)
T ss_dssp SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh
Confidence 55666444 33222 348999999988777555443
No 6
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=15.32 E-value=34 Score=19.62 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=15.3
Q ss_pred cccCCCHHHHHHhhhccCC
Q 034030 86 MGFFPNEGEVARYQKRGFS 104 (105)
Q Consensus 86 ~G~~EN~rEv~ry~~~~~~ 104 (105)
.--.+|.+.+++|+|+++.
T Consensus 52 vd~~~~~~l~~~~~I~~vP 70 (96)
T d1hyua4 52 IDGGTFQNEITERNVMGVP 70 (96)
T ss_dssp EETTTCHHHHHHTTCCSSS
T ss_pred EecccchHHHhhccccccc
Confidence 3557899999999998764
No 7
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=13.84 E-value=1.1e+02 Score=18.40 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=22.4
Q ss_pred ccCCCCchhhhhccChhHHHHHHHHHHHHHHHHHH
Q 034030 16 IDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYL 50 (105)
Q Consensus 16 Id~dP~f~rVv~nfR~sDy~~~a~~ta~~~~~~y~ 50 (105)
||..|.... ..++|.|++..+.++-.+..+..+
T Consensus 28 ~d~~~~~~~--~G~~P~elllaaLa~C~~~~~~~~ 60 (141)
T d1lqla_ 28 LDARPKHTA--KGFGPLAALLSGLAACELATANLM 60 (141)
T ss_dssp ECCSCTTTC--SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCC--CCcCHHHHHHHHHHHHHHHHHHHH
Confidence 455554433 469999999988877777666433
No 8
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.37 E-value=7.6 Score=22.09 Aligned_cols=16 Identities=50% Similarity=0.607 Sum_probs=13.5
Q ss_pred ccccccCCCHHHHHHh
Q 034030 83 GRLMGFFPNEGEVARY 98 (105)
Q Consensus 83 ~Rl~G~~EN~rEv~ry 98 (105)
.|=+||.|=..||.||
T Consensus 12 yra~GF~ECa~EV~Ry 27 (55)
T d2db7a1 12 YRSLGFRECLAEVARY 27 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4556999999999999
No 9
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=11.62 E-value=1.2e+02 Score=18.01 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=23.0
Q ss_pred ccCCCCchhhhhccChhHHHHHHHHHHHHHHHHH
Q 034030 16 IDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGY 49 (105)
Q Consensus 16 Id~dP~f~rVv~nfR~sDy~~~a~~ta~~~~~~y 49 (105)
||..|.+.--=..++|.||+..+.++-.+..+..
T Consensus 29 ~D~p~~~GG~~~g~~P~elllaala~C~~~~~~~ 62 (144)
T d1vlaa_ 29 MDTKEEVGGKDAAPRPLELVLTGLMGCTGMDVVS 62 (144)
T ss_dssp ECCCGGGTCCSCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 4554544445567899999988877776665543
No 10
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=11.16 E-value=22 Score=20.23 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.0
Q ss_pred CCCCCCcccCCCCchhhhhccChhHH
Q 034030 9 EKPQYPVIDRNPPFTAVVGNFNTLDY 34 (105)
Q Consensus 9 ~~p~YPvId~dP~f~rVv~nfR~sDy 34 (105)
..|+.++|.-+|.|.+..+| ..+|.
T Consensus 12 ~~pdg~Ii~vN~a~~~~~Gy-~~~El 36 (109)
T d1n9la_ 12 TLPDCPLVYASEGFYAMTGY-GPDEV 36 (109)
T ss_dssp TSTTCCEEEECHHHHHHHCC-CHHHH
T ss_pred CCCCCeEEEEcHHHHHHHCc-CHHHH
Confidence 35789999999999999999 55665
Done!