BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034031
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=psbX PE=3 SV=1
Length = 38
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 68 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 104
++PSL NFL S+VAG VVL A+ GA+I V+ D V+R
Sbjct: 1 MTPSLANFLWSLVAGAVVLGALFGAIIFVSQRDKVRR 37
>sp|Q2JRN5|PSBX2_SYNJA Photosystem II reaction center X protein 2 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX2 PE=3 SV=1
Length = 38
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 68 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 104
++PSL NFL S+V G VVL + GA++ V+ D V+R
Sbjct: 1 MTPSLANFLWSLVYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|Q2JRR9|PSBX1_SYNJA Photosystem II reaction center X protein 1 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX1 PE=3 SV=1
Length = 38
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 68 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 104
++PSL NFL S++ G VVL + GA++ V+ D V+R
Sbjct: 1 MTPSLANFLWSLLYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|Q2SJS1|RLMM_HAHCH Ribosomal RNA large subunit methyltransferase M OS=Hahella
chejuensis (strain KCTC 2396) GN=rlmM PE=3 SV=1
Length = 389
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 15 QNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKVAEAAGSGLSPSLKN 74
Q L+ S + + L V P+ +A LG P+ R R + + K+ EA + L+P+ +
Sbjct: 173 QLHLVCLSGQHIIAALAVHPNSSALPLGIPRLRFRNEAPSRSALKIEEAFLTMLTPAERE 232
Query: 75 FLLSIVAGGVVLAAIVGA 92
F+L GV L A G
Sbjct: 233 FVLKRGQRGVDLGAAPGG 250
>sp|B0JX68|PSBX_MICAN Photosystem II reaction center X protein OS=Microcystis aeruginosa
(strain NIES-843) GN=psbX PE=3 SV=2
Length = 39
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 68 LSPSLKNFLLSIVAGG--VVLAAIVGAVIGVANFDPVKRT 105
++PSL NFL S+V G V++ A +G +I ++ +D +KRT
Sbjct: 1 MTPSLANFLWSLVLGAAIVLIPATIG-LIFISQYDKIKRT 39
>sp|P49509|PSBX_ODOSI Photosystem II reaction center X protein OS=Odontella sinensis
GN=psbX PE=3 SV=1
Length = 38
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 68 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 104
++PSL NF+ S+ AGG+V+ I A+I ++ D V R
Sbjct: 1 MTPSLANFISSLTAGGLVVLTIAVALIVISRTDRVTR 37
>sp|Q9F1R6|PSBX_THEEB Photosystem II reaction center X protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=psbX PE=1 SV=2
Length = 41
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 68 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 105
++PSLK F + +++G VVL +I ++ D V+R+
Sbjct: 3 ITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 40
>sp|F2JTX5|RLMD_MARM1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Marinomonas
mediterranea (strain ATCC 700492 / JCM 21426 / NBRC
103028 / MMB-1) GN=rlmD PE=3 SV=1
Length = 435
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 50 LQVQASLKEKVAEAAGSGLSPSLKNFLLSIVAG----GVVLAAIVGAVIGVANFDPV 102
+QV AS+ EK+ E A L+P+ ++ +L + G + LA G V+GV + +
Sbjct: 268 IQVNASMNEKMVEQAMRWLAPTKEDIVLDLFCGSGNFSLPLARRAGEVLGVEGLETM 324
>sp|Q4P0N6|NDE1_USTMA Nuclear distribution protein nudE homolog 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=NDE1 PE=3 SV=1
Length = 646
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 4 VSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSR 47
+S A ++S+T + P SE P++PS AAR +P SR
Sbjct: 206 ISRADTMASSTYDDSTAPRSEQSFDSSPIKPSSAARATERPSSR 249
>sp|P21981|TGM2_MOUSE Protein-glutamine gamma-glutamyltransferase 2 OS=Mus musculus
GN=Tgm2 PE=1 SV=4
Length = 686
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 18 LIQPSSESFLKPLPVR------PSKAARFLGKPKSRARLQVQASLKEKVAE--------A 63
LI+P++ S+L L R P R LG+PK +L + SLK +++
Sbjct: 566 LIEPAANSYL--LAERDLYLENPEIKIRVLGEPKQNRKLVAEVSLKNPLSDPLYDCIFTV 623
Query: 64 AGSGLSPSLKNFLLS--IVAGGVVLAAI 89
G+GL+ K+ +S + AG +V A +
Sbjct: 624 EGAGLTKEQKSVEVSDPVPAGDLVKARV 651
>sp|A5GQT7|PSBX_SYNR3 Photosystem II reaction center X protein OS=Synechococcus sp.
(strain RCC307) GN=psbX PE=3 SV=1
Length = 40
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 68 LSPSLKNFLLSIVAGG-VVLAAIVGAVIGVANFDPVKR 104
++PSL NFL S+VAG +V+ I A+I ++ D V R
Sbjct: 1 MTPSLANFLNSLVAGALIVVVPITIALILISQTDQVDR 38
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,015,260
Number of Sequences: 539616
Number of extensions: 1068239
Number of successful extensions: 4616
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4603
Number of HSP's gapped (non-prelim): 28
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)