Query 034031
Match_columns 105
No_of_seqs 90 out of 92
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 09:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00088 predicted protein; Pr 100.0 2E-31 4.4E-36 196.0 6.9 101 1-105 1-127 (127)
2 CHL00114 psbX photosystem II p 99.8 2.8E-21 6.2E-26 118.7 4.1 38 68-105 1-39 (39)
3 PF06596 PsbX: Photosystem II 99.8 1E-21 2.3E-26 120.5 1.5 38 68-105 1-39 (39)
4 PF14187 DUF4310: Domain of un 68.8 7.2 0.00016 31.5 3.6 33 66-98 101-133 (209)
5 TIGR03579 EF_0833 conserved hy 61.9 12 0.00026 30.2 3.7 33 66-98 99-131 (209)
6 PF12732 YtxH: YtxH-like prote 57.0 8.2 0.00018 24.7 1.7 15 75-89 1-15 (74)
7 PF09813 Coiled-coil_56: Coile 46.6 24 0.00053 25.6 2.9 30 71-100 48-77 (100)
8 PHA02680 ORF090 IMV phosphoryl 37.2 21 0.00045 25.7 1.3 28 71-98 6-35 (91)
9 TIGR03513 GldL_gliding gliding 36.2 22 0.00047 28.4 1.4 13 92-104 42-54 (202)
10 PF05767 Pox_A14: Poxvirus vir 36.0 16 0.00034 26.3 0.6 29 71-99 6-36 (92)
11 PF04835 Pox_A9: A9 protein co 31.8 51 0.0011 21.7 2.4 33 71-103 21-53 (54)
12 PHA03048 IMV membrane protein; 30.6 22 0.00047 25.7 0.6 29 71-99 6-36 (93)
13 PRK13877 conjugal transfer rel 30.1 66 0.0014 23.1 3.0 36 48-85 11-49 (114)
14 COG4062 MtrB Tetrahydromethano 27.6 40 0.00087 24.9 1.5 21 72-92 77-99 (108)
15 COG2354 Uncharacterized protei 26.3 61 0.0013 27.6 2.6 22 67-88 273-294 (303)
16 PRK10927 essential cell divisi 26.0 63 0.0014 27.5 2.6 23 79-101 37-59 (319)
17 PF13706 PepSY_TM_3: PepSY-ass 25.5 27 0.00059 20.2 0.3 26 77-104 11-37 (37)
18 TIGR03546 conserved hypothetic 25.1 75 0.0016 23.9 2.7 21 71-91 101-121 (154)
19 PHA02898 virion envelope prote 25.0 32 0.00069 24.8 0.6 30 71-100 6-37 (92)
20 PF05058 ActA: ActA Protein; 24.5 59 0.0013 30.1 2.3 42 48-94 586-627 (633)
21 PF11021 DUF2613: Protein of u 21.6 1.5E+02 0.0033 19.3 3.2 26 76-101 9-34 (56)
22 TIGR03319 YmdA_YtgF conserved 21.5 33 0.00072 29.9 0.2 12 93-104 246-257 (514)
23 PF07423 DUF1510: Protein of u 21.4 86 0.0019 24.9 2.5 25 74-98 13-38 (217)
24 PF14575 EphA2_TM: Ephrin type 21.2 62 0.0013 21.4 1.4 22 76-97 3-24 (75)
25 PF09835 DUF2062: Uncharacteri 20.1 1E+02 0.0022 21.7 2.4 24 70-93 111-134 (154)
No 1
>PLN00088 predicted protein; Provisional
Probab=99.97 E-value=2e-31 Score=196.02 Aligned_cols=101 Identities=41% Similarity=0.542 Sum_probs=86.9
Q ss_pred Ccccccc----ccchh-hhhhccc-CCCcccccccCC-CCCcchhhhccCCCcccceEEecc-hhHH-------------
Q 034031 1 MASVSMA----MPLSS-ATQNRLI-QPSSESFLKPLP-VRPSKAARFLGKPKSRARLQVQAS-LKEK------------- 59 (105)
Q Consensus 1 MAS~Sma----~pl~~-at~~~~~-~pss~~ff~Plp-~r~s~~~~~~~~~~~~~r~~v~AS-~keK------------- 59 (105)
|||++|+ .++++ ++|.|+. .++.|+|-.--| .|++..... .+|+|+|++++ +|||
T Consensus 1 ma~~~~~s~~~a~~~~~~t~~~~~k~~~~~g~~l~~p~~~~~~~~~~----~n~~r~~~~as~~~ekav~gltaaAl~As 76 (127)
T PLN00088 1 MACAAMASVSSAATAPLATLVWEAKLLSRQGLALAAPSGKKQVSVAI----SNRSRVVMSLPAKEDHNVASLTSLALLAA 76 (127)
T ss_pred CchHHHHHhhccccchhhHhhhhhhhhccccceecCCCCccchhhhh----cccceeEEecchHHHHHHHHHHHHHHHHH
Confidence 7888753 57777 8899888 899999876556 455555532 45789999999 8999
Q ss_pred -----HHHHhCCCCChhHHHHHHHHHhhhHHHHhhhheeeeeeccccccCC
Q 034031 60 -----VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 105 (105)
Q Consensus 60 -----vaeaa~~~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~ 105 (105)
|||||++||||||+||||||+|||+|+++|++|||||||||||+|+
T Consensus 77 mv~pevAeAA~~gvTPSLsNFL~SLvaGgvVv~pI~~Ali~VSq~D~V~R~ 127 (127)
T PLN00088 77 AVVPEIAEAAQPGVSPSLKNLLLSVVAGGVVITVIGVAVAGVSTFDPVKRK 127 (127)
T ss_pred hhCHHHHHhccCCCChhHHHHHHHHHhhhhhhhhhheeeEEEeccCccccC
Confidence 9999999999999999999999999999999999999999999996
No 2
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=99.83 E-value=2.8e-21 Score=118.74 Aligned_cols=38 Identities=29% Similarity=0.511 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHhhhHHHH-hhhheeeeeeccccccCC
Q 034031 68 LSPSLKNFLLSIVAGGVVLA-AIVGAVIGVANFDPVKRT 105 (105)
Q Consensus 68 mTPSL~NFl~SLvaG~vVv~-~i~~Ali~VSq~D~V~R~ 105 (105)
|||||+|||+||+||++|++ ||++||+||||+|+++|+
T Consensus 1 MTpSLsnF~~SL~~Ga~ivvipi~~aLifvSq~D~v~R~ 39 (39)
T CHL00114 1 MTPSLSAFINSLLLGAIIVVIPITLALLFVSQKDRTTRN 39 (39)
T ss_pred CChhHHHHHHHHHHHHHHhHHHhhhheEEEeccceeccC
Confidence 99999999999999999875 999999999999999996
No 3
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=99.83 E-value=1e-21 Score=120.45 Aligned_cols=38 Identities=58% Similarity=0.922 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHhhh-HHHHhhhheeeeeeccccccCC
Q 034031 68 LSPSLKNFLLSIVAGG-VVLAAIVGAVIGVANFDPVKRT 105 (105)
Q Consensus 68 mTPSL~NFl~SLvaG~-vVv~~i~~Ali~VSq~D~V~R~ 105 (105)
|||||+|||+||+||| +|++||++||++|||+|+++|+
T Consensus 1 mTpSL~nfl~Sl~aG~~iVv~~i~~ali~VSq~D~v~R~ 39 (39)
T PF06596_consen 1 MTPSLSNFLLSLVAGAVIVVIPIAGALIFVSQFDRVKRS 39 (39)
T ss_dssp --HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCS-----
T ss_pred CCHhHHHHHHHHHhhhhhhhhhhhhheEEEeccCccccC
Confidence 8999999999999999 6777999999999999999996
No 4
>PF14187 DUF4310: Domain of unknown function (DUF4310)
Probab=68.76 E-value=7.2 Score=31.48 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=28.9
Q ss_pred CCCChhHHHHHHHHHhhhHHHHhhhheeeeeec
Q 034031 66 SGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVAN 98 (105)
Q Consensus 66 ~~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq 98 (105)
.+.+-.++||-+||+-|+++=+.|+..+|+|-+
T Consensus 101 ~Gi~~p~~~F~laLl~G~~iG~~iG~iIi~iRK 133 (209)
T PF14187_consen 101 AGITAPLENFPLALLTGAVIGLIIGYIIILIRK 133 (209)
T ss_pred ccccchHHHhHHHHHHHHHHHHHHhheeEEEEe
Confidence 468899999999999999988888888888765
No 5
>TIGR03579 EF_0833 conserved hypothetical protein EF_0833/AHA_3914. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=61.92 E-value=12 Score=30.24 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=27.9
Q ss_pred CCCChhHHHHHHHHHhhhHHHHhhhheeeeeec
Q 034031 66 SGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVAN 98 (105)
Q Consensus 66 ~~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq 98 (105)
.+++-.++||-+||+-|+++=+.|+..+|++-+
T Consensus 99 ~G~~~pv~nF~lsL~tG~~lG~~iG~iIi~~RK 131 (209)
T TIGR03579 99 AGIVAPVENFGLSLLTGAVLGLAVGYVIILIRK 131 (209)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhheeEEEEEe
Confidence 478999999999999999887788777777544
No 6
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=57.00 E-value=8.2 Score=24.74 Aligned_cols=15 Identities=47% Similarity=0.612 Sum_probs=10.5
Q ss_pred HHHHHHhhhHHHHhh
Q 034031 75 FLLSIVAGGVVLAAI 89 (105)
Q Consensus 75 Fl~SLvaG~vVv~~i 89 (105)
|++++++|+++-+++
T Consensus 1 F~~g~l~Ga~~Ga~~ 15 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAA 15 (74)
T ss_pred CHHHHHHHHHHHHHH
Confidence 788888888765433
No 7
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=46.56 E-value=24 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhhHHHHhhhheeeeeeccc
Q 034031 71 SLKNFLLSIVAGGVVLAAIVGAVIGVANFD 100 (105)
Q Consensus 71 SL~NFl~SLvaG~vVv~~i~~Ali~VSq~D 100 (105)
.-+|-+.+|..|++|++.-+--+..|+|-|
T Consensus 48 R~rN~~Tgl~L~~~v~gIY~YTi~sV~Qe~ 77 (100)
T PF09813_consen 48 RRRNLLTGLALGAFVVGIYAYTIYSVKQED 77 (100)
T ss_pred hhhhHHHHHHHHHHHHHHHhheeeeechhh
Confidence 468999999999999988777888888865
No 8
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=37.17 E-value=21 Score=25.71 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhhhHHHH--hhhheeeeeec
Q 034031 71 SLKNFLLSIVAGGVVLA--AIVGAVIGVAN 98 (105)
Q Consensus 71 SL~NFl~SLvaG~vVv~--~i~~Ali~VSq 98 (105)
-++|+..+++.||++++ +...|.+=.|+
T Consensus 6 ~i~ny~s~vli~GIiLL~~ACIFAfidFSK 35 (91)
T PHA02680 6 TLKSYYSGVLICGVLLLTAACVFAFVDFSK 35 (91)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhhc
Confidence 47999999999999886 55556666665
No 9
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=36.21 E-value=22 Score=28.36 Aligned_cols=13 Identities=8% Similarity=0.358 Sum_probs=9.6
Q ss_pred eeeeeeccccccC
Q 034031 92 AVIGVANFDPVKR 104 (105)
Q Consensus 92 Ali~VSq~D~V~R 104 (105)
.++|||.||+..+
T Consensus 42 lvFfiSAFe~p~~ 54 (202)
T TIGR03513 42 LIFAISAFEKPAD 54 (202)
T ss_pred HHHHHhccCCCcc
Confidence 3568899998654
No 10
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=36.01 E-value=16 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhHHHH--hhhheeeeeecc
Q 034031 71 SLKNFLLSIVAGGVVLA--AIVGAVIGVANF 99 (105)
Q Consensus 71 SL~NFl~SLvaG~vVv~--~i~~Ali~VSq~ 99 (105)
-|+|+..+++.||++++ ++..|.+=.|+.
T Consensus 6 ~~~n~~S~vli~GiiLL~~aCIfAfidfsK~ 36 (92)
T PF05767_consen 6 FLSNYFSGVLIGGIILLIAACIFAFIDFSKN 36 (92)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHhhhhccC
Confidence 58999999999999886 455566555544
No 11
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=31.80 E-value=51 Score=21.71 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhhHHHHhhhheeeeeecccccc
Q 034031 71 SLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103 (105)
Q Consensus 71 SL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~ 103 (105)
|+.+-+.=++.+-++-..++++|+.+|+.|..+
T Consensus 21 sF~fViik~vismimylilGi~L~yis~~~~~~ 53 (54)
T PF04835_consen 21 SFWFVIIKSVISMIMYLILGIALIYISSNDDKK 53 (54)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc
Confidence 455555556666666678999999999988643
No 12
>PHA03048 IMV membrane protein; Provisional
Probab=30.60 E-value=22 Score=25.67 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhhhHHHH--hhhheeeeeecc
Q 034031 71 SLKNFLLSIVAGGVVLA--AIVGAVIGVANF 99 (105)
Q Consensus 71 SL~NFl~SLvaG~vVv~--~i~~Ali~VSq~ 99 (105)
-++|+...++.||++++ +...|.+=.|+.
T Consensus 6 ~~~ny~S~vli~GIiLL~~aCIfAfidfsK~ 36 (93)
T PHA03048 6 MISNYFSTALIGGIILLAASCIFAFVDFSKN 36 (93)
T ss_pred HhhcccchHHHHHHHHHHHHHHHhhhhhhcC
Confidence 48999999999999886 445566655654
No 13
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=30.05 E-value=66 Score=23.12 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=27.5
Q ss_pred cceEEecchhHH---HHHHhCCCCChhHHHHHHHHHhhhHH
Q 034031 48 ARLQVQASLKEK---VAEAAGSGLSPSLKNFLLSIVAGGVV 85 (105)
Q Consensus 48 ~r~~v~AS~keK---vaeaa~~~mTPSL~NFl~SLvaG~vV 85 (105)
-.+.|+-+..|| -..|...|| |++.||--+..|..|
T Consensus 11 ~~I~vrvt~eE~~~I~~kA~~AGl--S~SeYLR~~aLg~~I 49 (114)
T PRK13877 11 RHLRVPVLPDEKAEIEANAAAAGL--SVARYLRDVGQGYQI 49 (114)
T ss_pred ceeEEEeCHHHHHHHHHHHHHhCC--CHHHHHHHHHcCCCc
Confidence 458888888888 333444578 899999999988876
No 14
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=27.57 E-value=40 Score=24.90 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhHHH--Hhhhhe
Q 034031 72 LKNFLLSIVAGGVVL--AAIVGA 92 (105)
Q Consensus 72 L~NFl~SLvaG~vVv--~~i~~A 92 (105)
|.||+++++.|..+. +++..+
T Consensus 77 ~tna~yGfviGl~i~aLlAlil~ 99 (108)
T COG4062 77 LTNAFYGFVIGLGIMALLALILG 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998874 455444
No 15
>COG2354 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.33 E-value=61 Score=27.58 Aligned_cols=22 Identities=45% Similarity=0.606 Sum_probs=18.9
Q ss_pred CCChhHHHHHHHHHhhhHHHHh
Q 034031 67 GLSPSLKNFLLSIVAGGVVLAA 88 (105)
Q Consensus 67 ~mTPSL~NFl~SLvaG~vVv~~ 88 (105)
...|++-|+...+++|++|++.
T Consensus 273 w~~~t~~~~v~g~v~G~vvv~~ 294 (303)
T COG2354 273 WLVPTLLNAVLGLVIGAVVVAL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999998763
No 16
>PRK10927 essential cell division protein FtsN; Provisional
Probab=26.04 E-value=63 Score=27.52 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHhhhHHHHhhhheeeeeecccc
Q 034031 79 IVAGGVVLAAIVGAVIGVANFDP 101 (105)
Q Consensus 79 LvaG~vVv~~i~~Ali~VSq~D~ 101 (105)
++..+.||+..+|+|.||+...+
T Consensus 37 ~alAvavlv~fiGGLyFith~k~ 59 (319)
T PRK10927 37 VAIAAAVLVTFIGGLYFITHHKK 59 (319)
T ss_pred HHHHHHHHHHHhhheEEEecCCC
Confidence 34445566677778999998664
No 17
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=25.49 E-value=27 Score=20.18 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=14.6
Q ss_pred HHHHhhhHHHH-hhhheeeeeeccccccC
Q 034031 77 LSIVAGGVVLA-AIVGAVIGVANFDPVKR 104 (105)
Q Consensus 77 ~SLvaG~vVv~-~i~~Ali~VSq~D~V~R 104 (105)
.+|+.|.+.++ .++|++... .|.++|
T Consensus 11 ~Gl~~g~~l~~~~~tG~~~~f--~~ei~r 37 (37)
T PF13706_consen 11 LGLILGLLLFVIFLTGAVMVF--RDEIDR 37 (37)
T ss_pred HHHHHHHHHHHHHHHhHHHHH--HHhhcC
Confidence 56777776554 566655443 344443
No 18
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=25.11 E-value=75 Score=23.88 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhhHHHHhhhh
Q 034031 71 SLKNFLLSIVAGGVVLAAIVG 91 (105)
Q Consensus 71 SL~NFl~SLvaG~vVv~~i~~ 91 (105)
.+..|..+++.|+++++.|.+
T Consensus 101 ~l~~f~~tl~~Gg~l~Gli~~ 121 (154)
T TIGR03546 101 PLARFNNTIVMGSFVVGLILL 121 (154)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 388899999999999975554
No 19
>PHA02898 virion envelope protein; Provisional
Probab=24.95 E-value=32 Score=24.79 Aligned_cols=30 Identities=30% Similarity=0.296 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhhhHHHH--hhhheeeeeeccc
Q 034031 71 SLKNFLLSIVAGGVVLA--AIVGAVIGVANFD 100 (105)
Q Consensus 71 SL~NFl~SLvaG~vVv~--~i~~Ali~VSq~D 100 (105)
-++|...+++.||++|+ +...|.+=.|+.-
T Consensus 6 ~~~N~~s~vli~GIiLL~~ACIfAfidfSK~~ 37 (92)
T PHA02898 6 FFKNRPSYVVAFGIILLIVACICAYIELSKSE 37 (92)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHheehhhcCC
Confidence 36899999999999886 5555766666543
No 20
>PF05058 ActA: ActA Protein; InterPro: IPR007752 The ActA family is found in Listeria and is associated with motility. ActA protein acts as a scaffold to assemble and activate host cell actin cytoskeletal factors at the bacterial surface, resulting in directional actin polymerisation and propulsion of the bacterium through the cytoplasm of the host cell [, ].
Probab=24.54 E-value=59 Score=30.08 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred cceEEecchhHHHHHHhCCCCChhHHHHHHHHHhhhHHHHhhhheee
Q 034031 48 ARLQVQASLKEKVAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVI 94 (105)
Q Consensus 48 ~r~~v~AS~keKvaeaa~~~mTPSL~NFl~SLvaG~vVv~~i~~Ali 94 (105)
+++-++-.=-||.-|-.|+-|| .+++|+|||||-+.|++=+|
T Consensus 586 ~KliaKSAEdEKa~ee~gnnT~-----Li~allAigVisL~vfIKIi 627 (633)
T PF05058_consen 586 EKLIAKSAEDEKANEESGNNTT-----LIIALLAIGVISLGVFIKII 627 (633)
T ss_pred cceeecchhhhhhhcCCCcchh-----HHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777777776 78999999999887766443
No 21
>PF11021 DUF2613: Protein of unknown function (DUF2613); InterPro: IPR022566 This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.
Probab=21.59 E-value=1.5e+02 Score=19.29 Aligned_cols=26 Identities=35% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHhhhHHHHhhhheeeeeecccc
Q 034031 76 LLSIVAGGVVLAAIVGAVIGVANFDP 101 (105)
Q Consensus 76 l~SLvaG~vVv~~i~~Ali~VSq~D~ 101 (105)
+-|.++|.++=++..+++-.+++.|.
T Consensus 9 ~aSaV~Gi~lG~~av~gvt~~~~~~s 34 (56)
T PF11021_consen 9 AASAVVGIVLGVAAVFGVTAAAQQDS 34 (56)
T ss_pred HHHHHHHHHHHHHHHhhhheeeecCC
Confidence 34666665544444445555555554
No 22
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=21.53 E-value=33 Score=29.88 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=9.9
Q ss_pred eeeeeccccccC
Q 034031 93 VIGVANFDPVKR 104 (105)
Q Consensus 93 li~VSq~D~V~R 104 (105)
.|.+|.||||+|
T Consensus 246 ~v~ls~fdp~rr 257 (514)
T TIGR03319 246 AVILSGFDPVRR 257 (514)
T ss_pred eEEecCCchHHH
Confidence 456899999988
No 23
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.43 E-value=86 Score=24.95 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=14.0
Q ss_pred HHHHHHHhhhHHHH-hhhheeeeeec
Q 034031 74 NFLLSIVAGGVVLA-AIVGAVIGVAN 98 (105)
Q Consensus 74 NFl~SLvaG~vVv~-~i~~Ali~VSq 98 (105)
|-++=++.|-|+|+ .|.+.-+|+.+
T Consensus 13 N~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 13 NKILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheecC
Confidence 55566666666555 44445555533
No 24
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=21.20 E-value=62 Score=21.39 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=12.1
Q ss_pred HHHHHhhhHHHHhhhheeeeee
Q 034031 76 LLSIVAGGVVLAAIVGAVIGVA 97 (105)
Q Consensus 76 l~SLvaG~vVv~~i~~Ali~VS 97 (105)
+++++.|+++++.+.+.++++.
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred EehHHHHHHHHHHhheeEEEEE
Confidence 4566777766654444444443
No 25
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=20.14 E-value=1e+02 Score=21.73 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhee
Q 034031 70 PSLKNFLLSIVAGGVVLAAIVGAV 93 (105)
Q Consensus 70 PSL~NFl~SLvaG~vVv~~i~~Al 93 (105)
-.+.++++.++.|++|++++.+.+
T Consensus 111 ~~~~~~~~~~~~G~~i~~~v~~~i 134 (154)
T PF09835_consen 111 ESLWEFGLPFLLGSLILGIVLGII 134 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999987665543
Done!