Query 034031
Match_columns 105
No_of_seqs 90 out of 92
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_X Photosystem II PSBX pro 99.8 1.5E-22 5E-27 123.4 1.9 39 67-105 1-39 (39)
2 3bz1_X Photosystem II PSBX pro 99.8 1.5E-21 5.1E-26 124.3 2.1 40 66-105 10-49 (50)
3 2zvk_U DNA polymerase ETA, pro 51.4 2.7 9.2E-05 23.4 -0.3 12 22-33 11-22 (26)
4 3hde_A Lysozyme; antimicrobial 30.5 41 0.0014 23.8 3.1 19 68-86 1-19 (165)
5 1nvp_C Transcription initiatio 19.6 19 0.00066 23.9 -0.4 12 94-105 34-45 (76)
6 2ba3_A NIKA; dimer, bacterial 16.7 1.6E+02 0.0053 16.4 3.2 31 48-82 16-51 (51)
7 1nh2_C Transcription initiatio 16.7 25 0.00084 23.6 -0.4 12 94-105 36-47 (79)
8 1ztd_A Hypothetical protein PF 16.1 64 0.0022 23.5 1.7 14 69-82 19-32 (133)
9 1y9b_A Conserved hypothetical 16.1 1.5E+02 0.005 19.2 3.3 35 47-83 5-43 (90)
10 2k1k_A Ephrin type-A receptor 11.4 85 0.0029 17.8 1.0 17 76-92 13-29 (38)
No 1
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=99.85 E-value=1.5e-22 Score=123.39 Aligned_cols=39 Identities=33% Similarity=0.711 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHhhhHHHHhhhheeeeeeccccccCC
Q 034031 67 GLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 105 (105)
Q Consensus 67 ~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~ 105 (105)
+|||||+|||+||+|||+|++.|++||++|||+||++|+
T Consensus 1 ~mTpSL~nFl~Sl~aG~vvvv~i~~ali~VSq~D~v~R~ 39 (39)
T 3arc_X 1 TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 39 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHheeEeccCccccC
Confidence 599999999999999999999999999999999999996
No 2
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=99.82 E-value=1.5e-21 Score=124.32 Aligned_cols=40 Identities=33% Similarity=0.676 Sum_probs=36.4
Q ss_pred CCCChhHHHHHHHHHhhhHHHHhhhheeeeeeccccccCC
Q 034031 66 SGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 105 (105)
Q Consensus 66 ~~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~ 105 (105)
.+|||||+|||+||+|||+|++.|++||++|||+|+|+|+
T Consensus 10 ~~mTpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D~v~R~ 49 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 49 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHheeeeccCccccC
Confidence 4799999999999999999999999999999999999995
No 3
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=51.42 E-value=2.7 Score=23.40 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=9.4
Q ss_pred CcccccccCCCC
Q 034031 22 SSESFLKPLPVR 33 (105)
Q Consensus 22 ss~~ff~Plp~r 33 (105)
+-++|||||+-.
T Consensus 11 TLesFFK~L~~~ 22 (26)
T 2zvk_U 11 TLESFFKPLTHX 22 (26)
T ss_pred cHHHHhccCCcc
Confidence 568999999753
No 4
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=30.51 E-value=41 Score=23.83 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHhhhHHH
Q 034031 68 LSPSLKNFLLSIVAGGVVL 86 (105)
Q Consensus 68 mTPSL~NFl~SLvaG~vVv 86 (105)
|+|+|+|=+...+.|+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (165)
T 3hde_A 1 MPPSLRKAVAAAIGGGAIA 19 (165)
T ss_dssp CCHHHHHHHHHHGGGHHHH
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 8899999998877776544
No 5
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=19.56 E-value=19 Score=23.92 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.0
Q ss_pred eeeeccccccCC
Q 034031 94 IGVANFDPVKRT 105 (105)
Q Consensus 94 i~VSq~D~V~R~ 105 (105)
+++.|+|+|+|.
T Consensus 34 ~vlC~ydKV~R~ 45 (76)
T 1nvp_C 34 VVVCQYDKIHRS 45 (76)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEecc
Confidence 568999999984
No 6
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=16.72 E-value=1.6e+02 Score=16.38 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=21.0
Q ss_pred cceEEecchhHH-----HHHHhCCCCChhHHHHHHHHHhh
Q 034031 48 ARLQVQASLKEK-----VAEAAGSGLSPSLKNFLLSIVAG 82 (105)
Q Consensus 48 ~r~~v~AS~keK-----vaeaa~~~mTPSL~NFl~SLvaG 82 (105)
-++.++-+..|+ -|+.+ ||| ++.|+-..+.|
T Consensus 16 ~~i~vRlt~eE~~~l~~~A~~~--g~s--~SeyiR~~~l~ 51 (51)
T 2ba3_A 16 VVRTLRFSPVEDETIRKKAEDS--GLT--VSAYIRNAALN 51 (51)
T ss_dssp EEEEEEECHHHHHHHHHHHHHH--TCC--HHHHHHHHHHC
T ss_pred eeEEEEECHHHHHHHHHHHHHh--CCC--HHHHHHHHHcC
Confidence 457777777776 44444 687 88998776654
No 7
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=16.66 E-value=25 Score=23.57 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.0
Q ss_pred eeeeccccccCC
Q 034031 94 IGVANFDPVKRT 105 (105)
Q Consensus 94 i~VSq~D~V~R~ 105 (105)
+++.|+|+|.|.
T Consensus 36 ~vlC~ydKV~R~ 47 (79)
T 1nh2_C 36 LMLCLYDKVTRT 47 (79)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEeee
Confidence 678999999884
No 8
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=16.14 E-value=64 Score=23.47 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=11.5
Q ss_pred ChhHHHHHHHHHhh
Q 034031 69 SPSLKNFLLSIVAG 82 (105)
Q Consensus 69 TPSL~NFl~SLvaG 82 (105)
-.||-||++||..-
T Consensus 19 GDSLvNfl~SlALs 32 (133)
T 1ztd_A 19 GDSLINFLYSLALT 32 (133)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 36999999999764
No 9
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=16.10 E-value=1.5e+02 Score=19.16 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=24.1
Q ss_pred ccceEEecchhHH--HHHHhCCCCCh--hHHHHHHHHHhhh
Q 034031 47 RARLQVQASLKEK--VAEAAGSGLSP--SLKNFLLSIVAGG 83 (105)
Q Consensus 47 ~~r~~v~AS~keK--vaeaa~~~mTP--SL~NFl~SLvaG~ 83 (105)
..|+.++.+..+| |.+||. +.- |++.|+..-+...
T Consensus 5 ~~ri~~R~~~e~k~lI~~AA~--~~G~~s~s~Fv~~aa~~~ 43 (90)
T 1y9b_A 5 LPRITARVDVDTQDLLAKAAA--LAGMSSINSFVLNAAIEK 43 (90)
T ss_dssp SCCEEEECCHHHHHHHHHHHH--HTTCSCHHHHHHHHHHHH
T ss_pred ccceeeeCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 3577788766666 666663 333 8999998876654
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.36 E-value=85 Score=17.81 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=8.0
Q ss_pred HHHHHhhhHHHHhhhhe
Q 034031 76 LLSIVAGGVVLAAIVGA 92 (105)
Q Consensus 76 l~SLvaG~vVv~~i~~A 92 (105)
+-.++.|.++.+.+.++
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 34555555544433333
Done!