Query 034031
Match_columns 105
No_of_seqs 90 out of 92
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 15:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034031.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034031hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvpc_ b.56.1.1 (C:) Large ch 30.7 4.1 0.0003 23.7 -0.4 12 94-105 5-16 (47)
2 d1nh2c_ b.56.1.1 (C:) Large ch 18.9 11 0.00082 22.6 -0.0 12 94-105 16-27 (59)
3 d1y9ba1 a.43.1.9 (A:3-83) Hypo 16.8 48 0.0035 19.7 2.6 32 48-81 4-39 (81)
4 d1ztda1 a.149.1.2 (A:2-125) Hy 14.7 35 0.0025 22.9 1.7 14 69-82 10-23 (124)
5 d1sgma2 a.121.1.1 (A:78-188) P 12.6 71 0.0051 17.9 2.5 18 70-87 73-90 (111)
6 d2p6ra1 a.4.5.43 (A:404-488) H 11.0 45 0.0033 19.3 1.2 17 69-85 9-25 (85)
7 d2vv5a3 f.34.1.1 (A:27-112) Me 9.8 1.2E+02 0.0086 17.0 2.9 23 67-89 34-56 (86)
8 d1nni1_ c.23.5.4 (1:) Azobenze 9.4 53 0.0038 20.2 1.1 24 55-78 56-88 (171)
9 d2g7sa2 a.121.1.1 (A:77-192) P 8.4 1.2E+02 0.0088 17.1 2.5 16 72-87 79-94 (116)
10 d1rtta_ c.23.5.4 (A:) Hypothet 7.6 49 0.0036 20.9 0.4 24 56-79 60-92 (174)
No 1
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.73 E-value=4.1 Score=23.73 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.1
Q ss_pred eeeeccccccCC
Q 034031 94 IGVANFDPVKRT 105 (105)
Q Consensus 94 i~VSq~D~V~R~ 105 (105)
+.+.|+|+|.|+
T Consensus 5 ~vlc~ydKV~R~ 16 (47)
T d1nvpc_ 5 VVVCQYDKIHRS 16 (47)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEee
Confidence 578999999984
No 2
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.92 E-value=11 Score=22.59 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.0
Q ss_pred eeeeccccccCC
Q 034031 94 IGVANFDPVKRT 105 (105)
Q Consensus 94 i~VSq~D~V~R~ 105 (105)
+.+.|+|+|.|.
T Consensus 16 ~vlc~yDKV~R~ 27 (59)
T d1nh2c_ 16 LMLCLYDKVTRT 27 (59)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEeec
Confidence 578999999884
No 3
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]}
Probab=16.85 E-value=48 Score=19.69 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=22.3
Q ss_pred cceEEecchhHH--HHHHhCCCCCh--hHHHHHHHHHh
Q 034031 48 ARLQVQASLKEK--VAEAAGSGLSP--SLKNFLLSIVA 81 (105)
Q Consensus 48 ~r~~v~AS~keK--vaeaa~~~mTP--SL~NFl~SLva 81 (105)
.|+.++.+..+| +.+||. ++- +++.|+.+-..
T Consensus 4 ~Ri~~Rv~~e~k~li~rAA~--l~G~~tls~Fv~~aa~ 39 (81)
T d1y9ba1 4 PRITARVDVDTQDLLAKAAA--LAGMSSINSFVLNAAI 39 (81)
T ss_dssp CCEEEECCHHHHHHHHHHHH--HTTCSCHHHHHHHHHH
T ss_pred cCeeeccCHHHHHHHHHHHH--HhCCCcHHHHHHHHHH
Confidence 478888877777 666763 442 79999887653
No 4
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}
Probab=14.71 E-value=35 Score=22.91 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=11.5
Q ss_pred ChhHHHHHHHHHhh
Q 034031 69 SPSLKNFLLSIVAG 82 (105)
Q Consensus 69 TPSL~NFl~SLvaG 82 (105)
-.||-||++|+..-
T Consensus 10 GDSLiNfl~SlALt 23 (124)
T d1ztda1 10 GDSLINFLYSLALT 23 (124)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 36899999999764
No 5
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=12.64 E-value=71 Score=17.93 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhhhHHHH
Q 034031 70 PSLKNFLLSIVAGGVVLA 87 (105)
Q Consensus 70 PSL~NFl~SLvaG~vVv~ 87 (105)
..|+.|+++++-|+.+..
T Consensus 73 ~~lA~~l~~~~~Ga~~~a 90 (111)
T d1sgma2 73 NQLGTLINSMIEGGIMLS 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 358999999999999875
No 6
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.95 E-value=45 Score=19.32 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHHhhhHH
Q 034031 69 SPSLKNFLLSIVAGGVV 85 (105)
Q Consensus 69 TPSL~NFl~SLvaG~vV 85 (105)
.++|.+.+++.++.|.|
T Consensus 9 ~~~L~~hllaeIasg~i 25 (85)
T d2p6ra1 9 ETHLRFHSLSIICDGYA 25 (85)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 36899999999988864
No 7
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.85 E-value=1.2e+02 Score=16.98 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHHhhhHHHHhh
Q 034031 67 GLSPSLKNFLLSIVAGGVVLAAI 89 (105)
Q Consensus 67 ~mTPSL~NFl~SLvaG~vVv~~i 89 (105)
.+++++.+|+..++--.+.+..+
T Consensus 34 ~~~~~~~~~i~~~~~~~i~~i~~ 56 (86)
T d2vv5a3 34 KIDATVADFLSALVRYGIIAFTL 56 (86)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 58899999999888777655433
No 8
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]}
Probab=9.36 E-value=53 Score=20.18 Aligned_cols=24 Identities=46% Similarity=0.513 Sum_probs=17.1
Q ss_pred chhHHHHHHh---------CCCCChhHHHHHHH
Q 034031 55 SLKEKVAEAA---------GSGLSPSLKNFLLS 78 (105)
Q Consensus 55 S~keKvaeaa---------~~~mTPSL~NFl~S 78 (105)
.+.|++.+|- -.++++.|||||=-
T Consensus 56 ~l~~~i~~aD~vIi~sP~Y~~~~~~~lKn~iD~ 88 (171)
T d1nni1_ 56 ELKQRVTKADAIVLLSPEYHSGMSGALKNALDF 88 (171)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHhhccCceEEechHHhcccchhHhHHHHH
Confidence 3566666663 24699999999873
No 9
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.42 E-value=1.2e+02 Score=17.10 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhHHHH
Q 034031 72 LKNFLLSIVAGGVVLA 87 (105)
Q Consensus 72 L~NFl~SLvaG~vVv~ 87 (105)
+..++++.+-|++++.
T Consensus 79 lA~~l~~~~~G~~~~a 94 (116)
T d2g7sa2 79 NAEIFMATVHGAMLSA 94 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999875
No 10
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.57 E-value=49 Score=20.94 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=16.4
Q ss_pred hhHHHHHHhC---------CCCChhHHHHHHHH
Q 034031 56 LKEKVAEAAG---------SGLSPSLKNFLLSI 79 (105)
Q Consensus 56 ~keKvaeaa~---------~~mTPSL~NFl~SL 79 (105)
++|++.+|-+ .+||+.|||||==+
T Consensus 60 ~~~~i~~aD~iii~sP~y~~s~~~~lKn~iD~l 92 (174)
T d1rtta_ 60 FREQIRAADALLFATPEYNYSMAGVLKNAIDWA 92 (174)
T ss_dssp HHHHHHHCSEEEEECCEETTEECHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEccchhccccHHHHHHHHHH
Confidence 5566665532 36999999999533
Done!