Query 034037
Match_columns 105
No_of_seqs 148 out of 1005
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 99.5 2.4E-15 5.2E-20 104.7 1.6 76 27-104 20-97 (111)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 2.7E-13 5.9E-18 85.6 4.6 55 49-103 1-66 (66)
3 COG0484 DnaJ DnaJ-class molecu 99.4 2E-13 4.4E-18 111.0 3.8 60 44-104 140-208 (371)
4 PRK14282 chaperone protein Dna 99.1 1.5E-10 3.3E-15 93.3 4.6 61 44-104 150-220 (369)
5 PRK14298 chaperone protein Dna 99.1 1.4E-10 3E-15 94.0 4.4 61 44-104 139-209 (377)
6 PRK14278 chaperone protein Dna 99.0 1.7E-10 3.7E-15 93.4 4.2 61 44-104 137-207 (378)
7 PRK14276 chaperone protein Dna 99.0 2.2E-10 4.7E-15 92.8 4.5 61 44-104 144-214 (380)
8 PRK14280 chaperone protein Dna 99.0 2.8E-10 6.1E-15 92.1 4.5 60 45-104 142-211 (376)
9 PRK14296 chaperone protein Dna 99.0 2.7E-10 5.8E-15 92.2 3.8 60 45-104 148-217 (372)
10 PRK14279 chaperone protein Dna 99.0 3.2E-10 7E-15 92.3 4.2 58 44-104 171-237 (392)
11 PRK14286 chaperone protein Dna 99.0 3.5E-10 7.6E-15 91.4 4.2 58 44-104 148-214 (372)
12 PRK14284 chaperone protein Dna 99.0 3.8E-10 8.1E-15 91.7 4.0 58 44-104 156-222 (391)
13 TIGR02349 DnaJ_bact chaperone 99.0 5.8E-10 1.3E-14 89.1 4.8 61 44-104 141-211 (354)
14 PRK14281 chaperone protein Dna 99.0 4.6E-10 1E-14 91.4 4.3 60 45-104 162-230 (397)
15 PRK14285 chaperone protein Dna 99.0 4.9E-10 1.1E-14 90.4 4.3 57 45-104 145-210 (365)
16 PRK14301 chaperone protein Dna 99.0 4.9E-10 1.1E-14 90.6 4.0 57 45-104 143-208 (373)
17 PRK14277 chaperone protein Dna 99.0 6.4E-10 1.4E-14 90.2 4.4 60 45-104 154-223 (386)
18 PRK14295 chaperone protein Dna 99.0 5.9E-10 1.3E-14 90.7 4.2 58 44-104 164-230 (389)
19 PRK10767 chaperone protein Dna 98.9 7.2E-10 1.6E-14 89.3 4.4 58 44-104 140-206 (371)
20 PRK14288 chaperone protein Dna 98.9 6.9E-10 1.5E-14 89.7 4.1 57 45-104 139-203 (369)
21 PRK14300 chaperone protein Dna 98.9 7.2E-10 1.6E-14 89.6 4.1 57 45-104 144-209 (372)
22 PRK14297 chaperone protein Dna 98.9 1E-09 2.2E-14 88.8 4.3 61 44-104 146-216 (380)
23 PRK14287 chaperone protein Dna 98.9 1.1E-09 2.4E-14 88.5 4.3 60 45-104 137-206 (371)
24 PRK14289 chaperone protein Dna 98.9 1.1E-09 2.4E-14 88.7 4.3 61 44-104 152-222 (386)
25 PRK14294 chaperone protein Dna 98.9 1.2E-09 2.6E-14 88.1 4.1 57 45-104 143-208 (366)
26 PRK14293 chaperone protein Dna 98.9 2.4E-09 5.3E-14 86.5 4.5 61 44-104 141-211 (374)
27 PRK14291 chaperone protein Dna 98.9 2.2E-09 4.8E-14 87.0 4.1 58 44-104 154-219 (382)
28 PTZ00037 DnaJ_C chaperone prot 98.8 2.6E-09 5.7E-14 88.0 4.3 61 44-104 148-219 (421)
29 PRK14290 chaperone protein Dna 98.8 3.2E-09 6.9E-14 85.6 4.3 59 45-104 148-216 (365)
30 PRK14283 chaperone protein Dna 98.8 4E-09 8.6E-14 85.4 4.3 61 44-104 144-214 (378)
31 PRK14292 chaperone protein Dna 98.8 5.1E-09 1.1E-13 84.4 4.1 60 45-104 138-208 (371)
32 KOG2813 Predicted molecular ch 98.3 3.2E-07 7E-12 74.4 2.0 59 45-103 186-266 (406)
33 COG1107 Archaea-specific RecJ- 98.2 6.7E-07 1.5E-11 77.0 2.6 58 47-104 3-79 (715)
34 KOG0712 Molecular chaperone (D 98.2 1.6E-06 3.4E-11 70.3 4.1 61 44-104 125-197 (337)
35 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.2 1.4E-06 2.9E-11 54.9 2.9 40 43-92 12-66 (66)
36 KOG2813 Predicted molecular ch 98.1 1.7E-06 3.6E-11 70.3 3.0 47 58-104 188-256 (406)
37 COG0484 DnaJ DnaJ-class molecu 97.9 7.3E-06 1.6E-10 67.2 3.0 38 45-93 158-208 (371)
38 COG1107 Archaea-specific RecJ- 97.3 0.00016 3.5E-09 62.6 2.7 45 45-99 17-86 (715)
39 KOG2824 Glutaredoxin-related p 97.2 0.00038 8.3E-09 55.3 3.8 53 45-100 228-280 (281)
40 PRK14296 chaperone protein Dna 97.2 0.00025 5.4E-09 57.6 2.7 38 45-93 165-217 (372)
41 PRK14284 chaperone protein Dna 97.2 0.00024 5.1E-09 58.0 2.5 38 45-93 174-222 (391)
42 PRK14300 chaperone protein Dna 97.2 0.00027 5.9E-09 57.3 2.8 38 45-93 161-209 (372)
43 PRK14298 chaperone protein Dna 97.1 0.00029 6.3E-09 57.3 2.6 38 45-93 157-209 (377)
44 cd03031 GRX_GRX_like Glutaredo 97.1 0.001 2.2E-08 48.1 5.1 51 44-96 97-147 (147)
45 PRK14285 chaperone protein Dna 97.1 0.00032 7E-09 56.8 2.7 37 46-93 163-210 (365)
46 PLN03165 chaperone protein dna 97.1 0.00041 8.9E-09 48.4 2.6 33 47-93 53-97 (111)
47 PRK14279 chaperone protein Dna 97.1 0.00036 7.7E-09 57.1 2.7 38 45-93 189-237 (392)
48 PRK14278 chaperone protein Dna 97.1 0.00038 8.2E-09 56.6 2.8 38 45-93 155-207 (378)
49 TIGR02642 phage_xxxx uncharact 97.1 0.0016 3.5E-08 49.0 5.9 27 46-72 99-130 (186)
50 PRK10767 chaperone protein Dna 97.1 0.00044 9.5E-09 55.9 3.0 37 46-93 159-206 (371)
51 PRK14286 chaperone protein Dna 97.0 0.00045 9.7E-09 56.1 2.8 37 46-93 167-214 (372)
52 PRK14301 chaperone protein Dna 97.0 0.00041 8.9E-09 56.3 2.6 37 46-93 161-208 (373)
53 PRK14280 chaperone protein Dna 97.0 0.00043 9.3E-09 56.2 2.6 38 45-93 159-211 (376)
54 PRK14282 chaperone protein Dna 97.0 0.00055 1.2E-08 55.4 2.9 38 45-93 168-220 (369)
55 PRK14288 chaperone protein Dna 97.0 0.00065 1.4E-08 55.1 3.2 37 46-93 156-203 (369)
56 PRK14290 chaperone protein Dna 97.0 0.00057 1.2E-08 55.3 2.8 38 45-93 164-216 (365)
57 PTZ00037 DnaJ_C chaperone prot 97.0 0.00067 1.5E-08 56.2 3.2 40 45-93 165-219 (421)
58 PRK14289 chaperone protein Dna 96.9 0.00052 1.1E-08 55.8 2.4 38 45-93 170-222 (386)
59 PRK14295 chaperone protein Dna 96.9 0.00059 1.3E-08 55.7 2.7 37 46-93 183-230 (389)
60 TIGR02349 DnaJ_bact chaperone 96.9 0.00072 1.6E-08 54.2 2.9 37 46-93 160-211 (354)
61 PRK14276 chaperone protein Dna 96.9 0.00057 1.2E-08 55.6 2.2 38 45-93 162-214 (380)
62 PRK14294 chaperone protein Dna 96.9 0.00075 1.6E-08 54.6 2.8 37 46-93 161-208 (366)
63 PRK14281 chaperone protein Dna 96.9 0.00083 1.8E-08 55.0 3.0 38 45-93 178-230 (397)
64 PRK14297 chaperone protein Dna 96.8 0.00074 1.6E-08 54.9 2.4 37 46-93 165-216 (380)
65 PRK14277 chaperone protein Dna 96.8 0.00089 1.9E-08 54.6 2.7 38 45-93 171-223 (386)
66 TIGR02642 phage_xxxx uncharact 96.7 0.00071 1.5E-08 50.9 1.5 27 58-93 100-126 (186)
67 PRK14287 chaperone protein Dna 96.6 0.0012 2.5E-08 53.7 2.2 38 45-93 154-206 (371)
68 PRK14293 chaperone protein Dna 96.6 0.0016 3.5E-08 52.8 3.0 38 45-93 159-211 (374)
69 PRK14291 chaperone protein Dna 96.6 0.0016 3.4E-08 53.1 2.8 37 45-93 172-219 (382)
70 PRK14283 chaperone protein Dna 96.4 0.0024 5.2E-08 51.9 2.9 38 45-93 162-214 (378)
71 PRK14292 chaperone protein Dna 96.3 0.0028 6E-08 51.3 2.7 37 46-93 157-208 (371)
72 KOG0715 Molecular chaperone (D 94.6 0.016 3.5E-07 45.9 1.3 56 46-104 164-228 (288)
73 KOG0712 Molecular chaperone (D 94.4 0.03 6.5E-07 45.7 2.4 44 41-93 138-197 (337)
74 TIGR00630 uvra excinuclease AB 92.7 0.09 2E-06 47.7 2.8 33 59-93 738-770 (924)
75 PRK00349 uvrA excinuclease ABC 90.6 0.21 4.5E-06 45.6 2.7 33 59-93 740-772 (943)
76 PRK00635 excinuclease ABC subu 89.9 0.24 5.2E-06 48.0 2.6 33 59-93 1609-1641(1809)
77 PF13901 DUF4206: Domain of un 89.3 0.44 9.5E-06 35.8 3.2 47 47-100 143-196 (202)
78 PF07092 DUF1356: Protein of u 88.7 0.2 4.3E-06 39.2 1.1 27 46-72 27-53 (238)
79 COG0178 UvrA Excinuclease ATPa 88.7 0.37 8.1E-06 43.8 2.8 33 59-93 732-764 (935)
80 cd03031 GRX_GRX_like Glutaredo 85.1 0.48 1E-05 34.2 1.3 35 56-104 98-144 (147)
81 TIGR00595 priA primosomal prot 83.7 1.9 4.2E-05 36.4 4.5 67 27-102 184-262 (505)
82 TIGR00630 uvra excinuclease AB 82.8 0.72 1.6E-05 42.0 1.7 22 83-104 737-770 (924)
83 PF14353 CpXC: CpXC protein 82.1 1.2 2.6E-05 30.6 2.3 36 58-93 2-49 (128)
84 TIGR03655 anti_R_Lar restricti 81.8 2.3 4.9E-05 25.3 3.2 36 58-93 2-37 (53)
85 COG1198 PriA Primosomal protei 81.1 3.5 7.6E-05 36.9 5.3 68 26-102 405-484 (730)
86 KOG2824 Glutaredoxin-related p 78.8 1.1 2.3E-05 36.0 1.2 34 57-104 229-273 (281)
87 PRK00349 uvrA excinuclease ABC 76.2 1.6 3.4E-05 40.0 1.7 23 82-104 738-772 (943)
88 PRK00635 excinuclease ABC subu 72.7 2.3 4.9E-05 41.6 1.9 23 82-104 1607-1641(1809)
89 smart00709 Zpr1 Duplicated dom 71.8 4.1 8.8E-05 29.8 2.7 33 59-91 2-38 (160)
90 PF07092 DUF1356: Protein of u 70.9 2.2 4.8E-05 33.4 1.2 14 81-94 37-50 (238)
91 PF13719 zinc_ribbon_5: zinc-r 69.8 3 6.6E-05 23.2 1.3 30 58-89 3-32 (37)
92 PRK04023 DNA polymerase II lar 67.1 5.6 0.00012 37.1 3.1 45 45-101 625-671 (1121)
93 TIGR00310 ZPR1_znf ZPR1 zinc f 66.8 6.2 0.00013 29.7 2.8 33 59-91 2-39 (192)
94 PF08792 A2L_zn_ribbon: A2L zi 65.3 8.2 0.00018 21.2 2.5 26 58-90 4-29 (33)
95 PF07295 DUF1451: Protein of u 65.2 4.9 0.00011 29.1 2.0 33 54-93 109-141 (146)
96 PF14354 Lar_restr_allev: Rest 64.8 8.2 0.00018 23.0 2.6 32 58-90 4-37 (61)
97 smart00440 ZnF_C2C2 C2C2 Zinc 63.3 12 0.00026 21.1 3.0 32 59-90 2-36 (40)
98 PF03367 zf-ZPR1: ZPR1 zinc-fi 61.3 5.8 0.00013 28.9 1.8 34 58-91 2-39 (161)
99 PF01096 TFIIS_C: Transcriptio 61.1 12 0.00026 21.0 2.7 32 59-90 2-36 (39)
100 PRK14873 primosome assembly pr 60.7 19 0.00042 31.8 5.1 68 26-102 354-431 (665)
101 TIGR00155 pqiA_fam integral me 59.0 15 0.00033 30.4 4.1 20 12-31 174-193 (403)
102 TIGR02098 MJ0042_CXXC MJ0042 f 58.0 7.7 0.00017 21.1 1.5 31 58-90 3-33 (38)
103 PRK11032 hypothetical protein; 55.4 8.1 0.00018 28.5 1.7 33 54-93 121-153 (160)
104 PRK00398 rpoP DNA-directed RNA 55.1 18 0.00039 20.6 2.8 10 82-91 21-30 (46)
105 COG0178 UvrA Excinuclease ATPa 54.7 7.1 0.00015 35.9 1.5 22 83-104 731-764 (935)
106 PRK14559 putative protein seri 54.2 11 0.00024 33.3 2.6 42 47-101 2-49 (645)
107 PRK14714 DNA polymerase II lar 53.5 17 0.00036 34.9 3.7 43 47-101 668-717 (1337)
108 PF13453 zf-TFIIB: Transcripti 53.5 13 0.00029 20.7 2.0 11 81-91 18-28 (41)
109 PRK05580 primosome assembly pr 50.4 35 0.00075 30.0 5.0 68 26-102 351-430 (679)
110 PF14369 zf-RING_3: zinc-finge 50.0 18 0.00039 20.0 2.2 7 84-90 23-29 (35)
111 PF03589 Antiterm: Antitermina 49.4 9.3 0.0002 25.7 1.1 34 59-93 7-43 (95)
112 PF11023 DUF2614: Protein of u 49.3 30 0.00065 24.4 3.6 22 43-64 66-92 (114)
113 PRK15103 paraquat-inducible me 48.1 29 0.00064 28.9 4.1 17 14-30 174-190 (419)
114 TIGR00340 zpr1_rel ZPR1-relate 45.7 20 0.00043 26.3 2.5 32 60-91 1-37 (163)
115 TIGR00595 priA primosomal prot 45.7 12 0.00026 31.7 1.5 36 44-91 220-262 (505)
116 PF03833 PolC_DP2: DNA polymer 45.5 6.9 0.00015 35.9 0.0 44 46-101 655-700 (900)
117 PF13717 zinc_ribbon_4: zinc-r 43.6 15 0.00033 20.3 1.2 30 58-89 3-32 (36)
118 TIGR00757 RNaseEG ribonuclease 42.7 15 0.00032 30.7 1.5 13 81-93 389-401 (414)
119 PF08273 Prim_Zn_Ribbon: Zinc- 42.2 20 0.00043 20.6 1.6 13 58-70 4-16 (40)
120 PRK00488 pheS phenylalanyl-tRN 41.8 23 0.0005 29.0 2.5 21 48-71 262-282 (339)
121 TIGR02533 type_II_gspE general 41.1 16 0.00034 31.0 1.4 13 41-53 374-386 (486)
122 PRK05580 primosome assembly pr 40.0 16 0.00035 32.0 1.4 39 41-91 385-430 (679)
123 PRK00420 hypothetical protein; 40.0 17 0.00036 25.4 1.2 10 81-90 39-48 (112)
124 PRK11712 ribonuclease G; Provi 39.5 20 0.00044 30.6 1.9 13 81-93 401-413 (489)
125 COG2804 PulE Type II secretory 39.3 24 0.00053 30.4 2.3 13 44-56 393-405 (500)
126 PF07754 DUF1610: Domain of un 38.1 20 0.00043 18.5 1.0 9 81-89 15-23 (24)
127 TIGR02538 type_IV_pilB type IV 38.0 17 0.00037 31.2 1.2 10 83-92 489-498 (564)
128 PTZ00368 universal minicircle 37.4 54 0.0012 22.8 3.5 47 46-93 27-88 (148)
129 PF08271 TF_Zn_Ribbon: TFIIB z 37.0 38 0.00082 19.0 2.2 9 59-67 2-10 (43)
130 PRK03564 formate dehydrogenase 36.4 37 0.00081 27.5 2.9 11 45-55 186-196 (309)
131 PF14803 Nudix_N_2: Nudix N-te 36.4 27 0.00057 19.3 1.4 28 59-89 2-29 (34)
132 COG2863 Cytochrome c553 [Energ 35.4 31 0.00067 24.4 2.0 18 39-56 25-42 (121)
133 KOG2041 WD40 repeat protein [G 35.3 48 0.001 30.7 3.6 95 6-101 1059-1182(1189)
134 PF09723 Zn-ribbon_8: Zinc rib 34.9 45 0.00098 18.8 2.3 28 59-90 7-34 (42)
135 PF04829 PT-VENN: Pre-toxin do 34.5 66 0.0014 19.5 3.1 39 4-42 11-50 (55)
136 cd01129 PulE-GspE PulE/GspE Th 33.6 18 0.00038 27.9 0.6 15 41-55 212-226 (264)
137 smart00778 Prim_Zn_Ribbon Zinc 33.2 20 0.00043 20.2 0.6 12 82-93 3-14 (37)
138 PF04438 zf-HIT: HIT zinc fing 32.0 24 0.00052 18.8 0.8 17 84-100 4-20 (30)
139 COG3809 Uncharacterized protei 30.9 49 0.0011 22.1 2.3 11 81-91 20-30 (88)
140 PF05180 zf-DNL: DNL zinc fing 30.9 12 0.00026 23.8 -0.6 10 81-90 28-37 (66)
141 PF00098 zf-CCHC: Zinc knuckle 30.7 38 0.00082 15.9 1.3 9 85-93 3-11 (18)
142 PF12669 P12: Virus attachment 30.6 1.3E+02 0.0028 18.3 4.8 18 34-53 17-34 (58)
143 PF07191 zinc-ribbons_6: zinc- 30.5 50 0.0011 21.3 2.2 12 80-91 28-39 (70)
144 PF05741 zf-nanos: Nanos RNA b 30.3 41 0.00088 20.7 1.7 13 81-93 32-44 (55)
145 PRK00464 nrdR transcriptional 30.3 60 0.0013 23.6 2.9 33 59-91 2-37 (154)
146 PF07282 OrfB_Zn_ribbon: Putat 30.1 29 0.00063 21.0 1.1 10 82-91 28-37 (69)
147 COG5082 AIR1 Arginine methyltr 30.1 46 0.001 25.3 2.3 46 42-93 56-108 (190)
148 PF12760 Zn_Tnp_IS1595: Transp 29.4 1.1E+02 0.0024 17.3 3.4 7 60-66 21-27 (46)
149 PRK14892 putative transcriptio 29.3 37 0.00081 23.1 1.5 11 81-91 41-51 (99)
150 TIGR01562 FdhE formate dehydro 28.9 60 0.0013 26.2 2.9 10 46-55 184-193 (305)
151 PRK14810 formamidopyrimidine-D 28.7 55 0.0012 25.5 2.6 28 57-89 244-271 (272)
152 TIGR01384 TFS_arch transcripti 28.7 77 0.0017 20.7 3.0 32 58-89 63-97 (104)
153 PF04606 Ogr_Delta: Ogr/Delta- 27.5 63 0.0014 18.5 2.1 15 59-73 1-15 (47)
154 COG2888 Predicted Zn-ribbon RN 27.0 34 0.00073 21.6 0.9 7 46-52 9-15 (61)
155 PF14029 DUF4244: Protein of u 26.9 99 0.0022 19.0 3.0 32 8-39 21-52 (56)
156 PRK04023 DNA polymerase II lar 26.9 45 0.00097 31.5 2.0 31 57-100 626-658 (1121)
157 PRK13697 cytochrome c6; Provis 26.6 7.6 0.00016 25.5 -2.2 10 47-56 37-46 (111)
158 PF03811 Zn_Tnp_IS1: InsA N-te 26.5 86 0.0019 17.4 2.5 10 58-67 6-15 (36)
159 PHA02998 RNA polymerase subuni 26.2 82 0.0018 24.1 3.0 34 58-91 144-180 (195)
160 PF06677 Auto_anti-p27: Sjogre 25.6 42 0.00092 19.2 1.1 8 82-89 34-41 (41)
161 PRK12380 hydrogenase nickel in 25.5 45 0.00099 22.7 1.5 26 58-92 71-96 (113)
162 PF01155 HypA: Hydrogenase exp 24.7 36 0.00077 23.1 0.8 10 83-92 87-96 (113)
163 PF14599 zinc_ribbon_6: Zinc-r 24.0 37 0.00081 21.1 0.7 15 57-71 30-44 (61)
164 PRK14714 DNA polymerase II lar 23.8 55 0.0012 31.6 2.1 18 84-101 681-700 (1337)
165 PF10122 Mu-like_Com: Mu-like 23.8 49 0.0011 20.1 1.2 10 81-90 23-32 (51)
166 PF05129 Elf1: Transcription e 23.8 34 0.00074 22.2 0.5 7 82-88 46-52 (81)
167 cd00064 FU Furin-like repeats. 23.6 49 0.0011 18.6 1.1 19 47-65 4-22 (49)
168 PF12387 Peptidase_C74: Pestiv 23.6 58 0.0013 24.8 1.8 29 40-68 156-186 (200)
169 PF14205 Cys_rich_KTR: Cystein 23.1 55 0.0012 20.2 1.3 33 57-91 4-37 (55)
170 PF01927 Mut7-C: Mut7-C RNAse 22.7 91 0.002 21.9 2.6 9 81-89 123-131 (147)
171 PF06120 Phage_HK97_TLTM: Tail 22.5 1E+02 0.0022 25.0 3.1 26 10-35 15-40 (301)
172 PRK00564 hypA hydrogenase nick 22.4 41 0.00088 23.1 0.8 9 84-92 90-98 (117)
173 COG3058 FdhE Uncharacterized p 22.3 56 0.0012 26.6 1.6 34 58-91 226-261 (308)
174 PRK01103 formamidopyrimidine/5 22.0 85 0.0018 24.3 2.5 27 58-89 246-272 (274)
175 PHA00626 hypothetical protein 22.0 45 0.00098 20.8 0.8 17 84-100 13-30 (59)
176 PRK02935 hypothetical protein; 21.8 55 0.0012 22.9 1.3 10 43-52 67-76 (110)
177 PF03526 Microcin: Colicin E1 21.1 1.2E+02 0.0026 18.7 2.5 21 20-40 9-29 (55)
178 TIGR00100 hypA hydrogenase nic 20.7 66 0.0014 21.9 1.5 11 82-92 86-96 (115)
179 PRK13945 formamidopyrimidine-D 20.6 93 0.002 24.3 2.5 27 58-89 255-281 (282)
180 PRK07558 F0F1 ATP synthase sub 20.6 1.4E+02 0.003 19.2 2.9 16 1-16 1-16 (74)
181 PF09297 zf-NADH-PPase: NADH p 20.6 49 0.0011 17.4 0.7 7 83-89 22-28 (32)
182 PF12172 DUF35_N: Rubredoxin-l 20.3 59 0.0013 17.5 1.0 8 83-90 26-33 (37)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.53 E-value=2.4e-15 Score=104.66 Aligned_cols=76 Identities=22% Similarity=0.545 Sum_probs=62.1
Q ss_pred HHHHHHHHH--HHHHHhcCCCcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCcccccccCccCCcccc
Q 034037 27 STITLGALR--AASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGF 104 (105)
Q Consensus 27 s~~a~~~~~--~~~~~~~~~~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~~C~~C~G~G~ 104 (105)
.++-++.|. .+.++.++...+.|+.|+|+|..+|+.|+|+|.+.+.. .+.++.+++||.|+|+|+.+|+.|+|+|+
T Consensus 20 ~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~ 97 (111)
T PLN03165 20 VGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--GGGEKEVSKCINCDGAGSLTCTTCQGSGI 97 (111)
T ss_pred hccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--CCcEEEEEECCCCCCcceeeCCCCCCCEE
Confidence 344444544 45555678889999999999999999999999998754 23466889999999999999999999986
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.41 E-value=2.7e-13 Score=85.63 Aligned_cols=55 Identities=31% Similarity=0.727 Sum_probs=44.0
Q ss_pred CCCCcCccc------ccCCCCCcccEEEEc-cCCCCccccceeCCCCcccccc----cCccCCccc
Q 034037 49 CGVCKGKGF------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRVQ----RCLNCLGKG 103 (105)
Q Consensus 49 C~~C~GsG~------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~~----~C~~C~G~G 103 (105)
|+.|+|+|. .+|+.|+|+|++... +..++.++.+++||.|+|+|++ +|++|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999994 689999999999885 3455678899999999999983 799999986
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-13 Score=111.01 Aligned_cols=60 Identities=30% Similarity=0.671 Sum_probs=53.4
Q ss_pred CCcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+| ..+|++|+|+|++...+.. +.|+.+++||+|+|+|+ .||++|+|.|+
T Consensus 140 ~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~ 208 (371)
T COG0484 140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR 208 (371)
T ss_pred ceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence 4578999999998 4799999999999887655 77889999999999999 49999999986
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=1.5e-10 Score=93.31 Aligned_cols=61 Identities=28% Similarity=0.611 Sum_probs=51.3
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++... +...+.++.+++|+.|+|+|+ .+|+.|+|+|+
T Consensus 150 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 220 (369)
T PRK14282 150 DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGR 220 (369)
T ss_pred eecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCcee
Confidence 35689999999993 689999999998775 344566778899999999998 49999999985
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=1.4e-10 Score=93.99 Aligned_cols=61 Identities=28% Similarity=0.586 Sum_probs=51.3
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++.... ..++.++.+.+|+.|+|+|+ .+|+.|+|+|+
T Consensus 139 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 209 (377)
T PRK14298 139 PRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGK 209 (377)
T ss_pred EeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccE
Confidence 34689999999994 6899999999987753 33456778999999999998 59999999985
No 6
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=1.7e-10 Score=93.42 Aligned_cols=61 Identities=30% Similarity=0.677 Sum_probs=51.0
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++.... ...+.++.+++|+.|+|+|+ .+|+.|+|.|+
T Consensus 137 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 207 (378)
T PRK14278 137 DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGR 207 (378)
T ss_pred EeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCcee
Confidence 34689999999993 6899999999987753 34456677889999999998 59999999985
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=2.2e-10 Score=92.80 Aligned_cols=61 Identities=25% Similarity=0.600 Sum_probs=51.1
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++.... ...+.++.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (380)
T PRK14276 144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGH 214 (380)
T ss_pred eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceE
Confidence 35689999999993 6899999999987753 33456677889999999998 49999999986
No 8
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=2.8e-10 Score=92.05 Aligned_cols=60 Identities=28% Similarity=0.648 Sum_probs=50.4
Q ss_pred CcccCCCCcCcc------cccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKG------FYICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+| ..+|+.|+|+|++.... ...+.++.+.+|+.|+|+|+ .+|+.|+|+|+
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 211 (376)
T PRK14280 142 KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGK 211 (376)
T ss_pred eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceE
Confidence 468999999999 36899999999987753 33456667889999999998 59999999985
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=2.7e-10 Score=92.20 Aligned_cols=60 Identities=30% Similarity=0.659 Sum_probs=49.2
Q ss_pred CcccCCCCcCccc------ccCCCCCcccEEEEccCCCC-ccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDP-VFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g-~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+|. .+|+.|+|+|.+...+...+ .++.+++|+.|+|+|+ .+|+.|+|.|+
T Consensus 148 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~ 217 (372)
T PRK14296 148 LLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGK 217 (372)
T ss_pred eeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceE
Confidence 4678999999994 68999999999887643322 3456789999999998 48999999985
No 10
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=3.2e-10 Score=92.28 Aligned_cols=58 Identities=29% Similarity=0.725 Sum_probs=49.6
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++.... +.++.+++|+.|+|+|+ .+|+.|+|.|+
T Consensus 171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~ 237 (392)
T PRK14279 171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ---GAFGFSEPCTDCRGTGSIIEDPCEECKGTGV 237 (392)
T ss_pred eccccCCCCccccccCCCCCCCCCCCcceEEEEEEe---cceEEEEecCCCCceeEEeCCcCCCCCCCeE
Confidence 45689999999993 6899999999987764 34567899999999998 59999999885
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=3.5e-10 Score=91.44 Aligned_cols=58 Identities=31% Similarity=0.703 Sum_probs=49.9
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++.... +.++.+++|+.|+|+|+ .+|+.|+|.|+
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (372)
T PRK14286 148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGL 214 (372)
T ss_pred eccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe---ceEEEEEeCCCCCceeeEecccCCCCCCCcE
Confidence 35689999999994 6899999999987764 45678889999999998 59999999986
No 12
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=3.8e-10 Score=91.71 Aligned_cols=58 Identities=31% Similarity=0.702 Sum_probs=49.8
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|.+.... +.++.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 222 (391)
T PRK14284 156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGR 222 (391)
T ss_pred eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe---ceEEEEEECCCCCCCCcccCCcCCCCCCcce
Confidence 45689999999993 6899999999988654 45678889999999998 59999999885
No 13
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.98 E-value=5.8e-10 Score=89.12 Aligned_cols=61 Identities=30% Similarity=0.613 Sum_probs=51.0
Q ss_pred CCcccCCCCcCcc------cccCCCCCcccEEEEccC-CCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKG------FYICKLCKGNATIEWSPL-YDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~-~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+| ..+|+.|+|+|.+..... ..+.++.+++|+.|.|+|+ .+|+.|+|+|+
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 211 (354)
T TIGR02349 141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGR 211 (354)
T ss_pred ecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcE
Confidence 3568999999999 468999999999877543 3445667889999999998 49999999985
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=4.6e-10 Score=91.42 Aligned_cols=60 Identities=33% Similarity=0.796 Sum_probs=50.5
Q ss_pred CcccCCCCcCccc-----ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF-----YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+|. .+|+.|+|+|+++.. +...+.++.+++|+.|.|+|+ .+|+.|+|.|+
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 230 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGI 230 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCcc
Confidence 4678999999994 689999999998775 334456667889999999998 59999999986
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=4.9e-10 Score=90.40 Aligned_cols=57 Identities=35% Similarity=0.731 Sum_probs=49.0
Q ss_pred CcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+| ..+|+.|+|+|++...+ +.++.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 210 (365)
T PRK14285 145 RNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG---GFFRVTTTCPKCYGNGKIISNPCKSCKGKGS 210 (365)
T ss_pred ecccCCCCCCcccCCCCCCccCCCccCceeEEecC---ceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence 468999999999 36899999999988643 44578999999999998 59999999985
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=4.9e-10 Score=90.63 Aligned_cols=57 Identities=30% Similarity=0.741 Sum_probs=49.3
Q ss_pred CcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+|. .+|+.|+|+|++.... +.++.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (373)
T PRK14301 143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---GFFQIAVPCPVCRGEGRVITHPCPKCKGSGI 208 (373)
T ss_pred ecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe---eeEEEEEeCCCCCceeeecCCCCCCCCCCce
Confidence 4689999999993 6899999999987654 44677999999999998 59999999985
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=6.4e-10 Score=90.23 Aligned_cols=60 Identities=28% Similarity=0.589 Sum_probs=50.1
Q ss_pred CcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+|. .+|+.|+|+|++.... ...+.++..++|+.|+|+|+ .+|+.|+|+|+
T Consensus 154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 223 (386)
T PRK14277 154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGR 223 (386)
T ss_pred eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcE
Confidence 4689999999993 6899999999987753 33455667789999999998 49999999985
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=5.9e-10 Score=90.67 Aligned_cols=58 Identities=31% Similarity=0.772 Sum_probs=49.7
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++.... +.|+.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 164 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 230 (389)
T PRK14295 164 TSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS---GGFSLSEPCPDCKGRGLIADDPCLVCKGSGR 230 (389)
T ss_pred eccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe---cceEEEEecCCCcceeEEeccCCCCCCCCce
Confidence 35688999999993 6899999999988764 35678889999999998 49999999885
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=7.2e-10 Score=89.27 Aligned_cols=58 Identities=29% Similarity=0.739 Sum_probs=49.3
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. ..|+.|+|+|++...+ +.++.+.+|+.|+|+|+ .+|+.|+|+|+
T Consensus 140 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 206 (371)
T PRK10767 140 PTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR 206 (371)
T ss_pred eecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee---ceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence 34689999999993 5899999999987654 44567889999999998 49999999985
No 20
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=6.9e-10 Score=89.66 Aligned_cols=57 Identities=26% Similarity=0.668 Sum_probs=48.7
Q ss_pred CcccCCCCcCccc-----ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+|. .+|+.|+|+|++.... +.++.+++|+.|.|+|+ .+|+.|+|.|+
T Consensus 139 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 203 (369)
T PRK14288 139 YQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTY 203 (369)
T ss_pred eeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe---ceEEEEEecCCCCCCceEccccCccCCCcce
Confidence 4569999999993 6899999999987764 44567889999999998 59999999885
No 21
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=7.2e-10 Score=89.57 Aligned_cols=57 Identities=28% Similarity=0.686 Sum_probs=49.0
Q ss_pred CcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+| ..+|+.|+|+|.+.... +.++.+.+|+.|.|+|+ .+|+.|+|.|+
T Consensus 144 r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 209 (372)
T PRK14300 144 SEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGR 209 (372)
T ss_pred eccccCCCCCcccCCCCCCccCCCccCeEEEEEee---ceEEEEEeCCCCCccceEeCCCCCCCCCceE
Confidence 468999999999 36899999999987653 44667889999999998 59999999986
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=1e-09 Score=88.80 Aligned_cols=61 Identities=28% Similarity=0.605 Sum_probs=50.8
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++... +...+.++.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 146 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 216 (380)
T PRK14297 146 TRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGK 216 (380)
T ss_pred eeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeE
Confidence 34688999999994 689999999998764 333456778999999999998 49999999885
No 23
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1.1e-09 Score=88.53 Aligned_cols=60 Identities=32% Similarity=0.665 Sum_probs=49.9
Q ss_pred CcccCCCCcCcc------cccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKG------FYICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+| ..+|+.|+|+|++.... ...+.++.+.+|+.|.|+|+ .+|+.|+|.|+
T Consensus 137 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 206 (371)
T PRK14287 137 REETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGK 206 (371)
T ss_pred eeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeE
Confidence 467899999999 36899999999987753 33456667889999999998 49999999875
No 24
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1.1e-09 Score=88.69 Aligned_cols=61 Identities=31% Similarity=0.751 Sum_probs=51.3
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. ..|+.|+|+|.+.... ...+.++.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 152 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 222 (386)
T PRK14289 152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGI 222 (386)
T ss_pred EeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcE
Confidence 45689999999993 6899999999988753 33456667899999999998 49999999985
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=1.2e-09 Score=88.06 Aligned_cols=57 Identities=30% Similarity=0.676 Sum_probs=48.8
Q ss_pred CcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+|. .+|+.|+|+|.+.... +.++.+++|+.|+|+|+ .+|+.|+|.|+
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (366)
T PRK14294 143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR 208 (366)
T ss_pred ecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe---eeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence 4689999999994 5899999999987643 44668899999999998 49999999885
No 26
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=2.4e-09 Score=86.48 Aligned_cols=61 Identities=28% Similarity=0.651 Sum_probs=50.3
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.++|+.|+|+|. .+|+.|+|+|++.... ...+.++.+.+|+.|.|+|+ .+|+.|+|.|+
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 211 (374)
T PRK14293 141 PHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGV 211 (374)
T ss_pred eccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcc
Confidence 35689999999994 5799999999987653 33355667789999999998 49999999986
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=2.2e-09 Score=87.00 Aligned_cols=58 Identities=34% Similarity=0.782 Sum_probs=49.6
Q ss_pred CCcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc--ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV--QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~--~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+| ..+|+.|+|+|++.... +.++.+.+|+.|+|+|. .+|+.|+|.|+
T Consensus 154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~ 219 (382)
T PRK14291 154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG---GFFRISQTCPTCGGEGVLREPCSKCNGRGL 219 (382)
T ss_pred eeeccCCCCccccCCCCCCCccCCCCCCceEEEEec---ceEEEEecCCCCCCceEEccCCCCCCCCce
Confidence 3568999999999 46899999999987763 44668899999999997 59999999885
No 28
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.84 E-value=2.6e-09 Score=88.01 Aligned_cols=61 Identities=30% Similarity=0.668 Sum_probs=48.5
Q ss_pred CCcccCCCCcCccc-----ccCCCCCcccEEEEccCCCC-ccccceeCCCCccccc-----ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDP-VFINPCLCPTCEGNRV-----QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g-~~~~~~~Cp~C~G~G~-----~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. .+|+.|+|+|++.......+ .++.+.+|+.|+|+|+ .+|+.|+|.|+
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~ 219 (421)
T PTZ00037 148 NKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGV 219 (421)
T ss_pred eccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcce
Confidence 34689999999994 68999999998655433322 2357889999999998 37999999985
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=3.2e-09 Score=85.57 Aligned_cols=59 Identities=25% Similarity=0.586 Sum_probs=48.3
Q ss_pred CcccCCCCcCccc-----ccCCCCCcccEEEEccCCCCc--cccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDPV--FINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g~--~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+.+.|+.|+|+|. ..|+.|+|+|++..... .+. ++.+++|+.|.|+|+ .+|+.|+|+|+
T Consensus 148 r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~-~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 216 (365)
T PRK14290 148 RNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG-QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGT 216 (365)
T ss_pred ecccCCCCccccCCCCCCccCCCCCCcCEEEEEec-cCeEEEEEEEeCCCCCCceeEccCCCCCCCCcee
Confidence 4688999999994 68999999999877543 232 345789999999997 59999999986
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=4e-09 Score=85.36 Aligned_cols=61 Identities=30% Similarity=0.694 Sum_probs=50.2
Q ss_pred CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
.+.+.|+.|+|+|. ..|+.|+|+|++.... ...+.++.+.+|+.|.|+|+ .+|..|+|+|+
T Consensus 144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (378)
T PRK14283 144 RHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGV 214 (378)
T ss_pred eeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCcee
Confidence 34689999999983 6799999999987653 33455667789999999998 49999999985
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=5.1e-09 Score=84.38 Aligned_cols=60 Identities=27% Similarity=0.574 Sum_probs=49.9
Q ss_pred CcccCCCCcCccc-------ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037 45 FAMPCGVCKGKGF-------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF 104 (105)
Q Consensus 45 ~~~~C~~C~GsG~-------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~ 104 (105)
+...|+.|+|+|. .+|+.|+|+|.+... +...+.++.+.+|+.|+|+|+ .+|+.|+|+|+
T Consensus 138 r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (371)
T PRK14292 138 RLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGR 208 (371)
T ss_pred eeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceE
Confidence 4688999999993 579999999998764 333455667889999999998 59999999985
No 32
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.2e-07 Score=74.40 Aligned_cols=59 Identities=25% Similarity=0.577 Sum_probs=37.9
Q ss_pred CcccCCCCcCcccccCCCCCcccE--------EEEccCC------CCc--------cccceeCCCCcccccccCccCCcc
Q 034037 45 FAMPCGVCKGKGFYICKLCKGNAT--------IEWSPLY------DPV--------FINPCLCPTCEGNRVQRCLNCLGK 102 (105)
Q Consensus 45 ~~~~C~~C~GsG~~~C~~C~G~G~--------i~~~~~~------~g~--------~~~~~~Cp~C~G~G~~~C~~C~G~ 102 (105)
..+.|..|.|.|...|+.|+|.|. +.+..-. .+. .....+|++|+|+|+++|.+|.|+
T Consensus 186 ~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gt 265 (406)
T KOG2813|consen 186 IVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGT 265 (406)
T ss_pred hhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCc
Confidence 346789999999999999999984 2221000 010 113456777777777777777776
Q ss_pred c
Q 034037 103 G 103 (105)
Q Consensus 103 G 103 (105)
|
T Consensus 266 g 266 (406)
T KOG2813|consen 266 G 266 (406)
T ss_pred c
Confidence 6
No 33
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.22 E-value=6.7e-07 Score=77.02 Aligned_cols=58 Identities=29% Similarity=0.580 Sum_probs=45.3
Q ss_pred ccCCCCcCccc-----ccCCCCCcccEEEEcc----------CCCCccccceeCCCCccccc----ccCccCCcccc
Q 034037 47 MPCGVCKGKGF-----YICKLCKGNATIEWSP----------LYDPVFINPCLCPTCEGNRV----QRCLNCLGKGF 104 (105)
Q Consensus 47 ~~C~~C~GsG~-----~~C~~C~G~G~i~~~~----------~~~g~~~~~~~Cp~C~G~G~----~~C~~C~G~G~ 104 (105)
..|+.|+|+|. ..|+.|+|+|.+...+ ..+..+....+||.|+|.|+ .+|+.|.|+|.
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gk 79 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGK 79 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCcee
Confidence 57999999994 5799999999984421 11222335679999999998 49999999986
No 34
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.6e-06 Score=70.27 Aligned_cols=61 Identities=25% Similarity=0.605 Sum_probs=50.1
Q ss_pred CCcccCCCCcCccc-----ccCCCCCcccEEEEccCCCC-c-cccceeCCCCcccccc-----cCccCCcccc
Q 034037 44 KFAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDP-V-FINPCLCPTCEGNRVQ-----RCLNCLGKGF 104 (105)
Q Consensus 44 ~~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g-~-~~~~~~Cp~C~G~G~~-----~C~~C~G~G~ 104 (105)
.+...|+.|+|+|. ..|+.|.|+|.........+ . .+.+..|+.|+|+|.. +|+.|+|+++
T Consensus 125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~ 197 (337)
T KOG0712|consen 125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKV 197 (337)
T ss_pred ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchh
Confidence 35789999999993 57999999999877655444 2 3478899999999985 9999999875
No 35
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.19 E-value=1.4e-06 Score=54.88 Aligned_cols=40 Identities=33% Similarity=0.682 Sum_probs=28.9
Q ss_pred CCCcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCcccc
Q 034037 43 KKFAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNR 92 (105)
Q Consensus 43 ~~~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G 92 (105)
......|+.|+|+|. .+|+.|+|+|++. . ..+|+.|+|+|
T Consensus 12 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~---------~~~C~~C~G~g 66 (66)
T PF00684_consen 12 GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E---------KDPCKTCKGSG 66 (66)
T ss_dssp TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T---------SSB-SSSTTSS
T ss_pred CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C---------CCCCCCCCCcC
Confidence 346789999999992 5899999999884 1 45899999986
No 36
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.7e-06 Score=70.34 Aligned_cols=47 Identities=23% Similarity=0.584 Sum_probs=29.1
Q ss_pred ccCCCCCcccEEEEccCC-CC-------ccc--------------cceeCCCCcccccccCccCCcccc
Q 034037 58 YICKLCKGNATIEWSPLY-DP-------VFI--------------NPCLCPTCEGNRVQRCLNCLGKGF 104 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~-~g-------~~~--------------~~~~Cp~C~G~G~~~C~~C~G~G~ 104 (105)
..|..|.|+|.+.+..-. .| .+. ....|..|+|+|+.+|++|+|.|.
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~ 256 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGK 256 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCC
Confidence 468888888877764111 11 111 234577777778888888888774
No 37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.3e-06 Score=67.19 Aligned_cols=38 Identities=29% Similarity=0.676 Sum_probs=33.4
Q ss_pred CcccCCCCcCccc-------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF-------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~-------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
..+.|++|+|+|. .+|++|+|+|++. ..+|++|+|.|.
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~pC~~C~G~G~ 208 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----------KDPCGKCKGKGR 208 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----------CCCCCCCCCCCe
Confidence 6889999999992 5899999999873 459999999997
No 38
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.00016 Score=62.65 Aligned_cols=45 Identities=36% Similarity=0.810 Sum_probs=31.8
Q ss_pred CcccCCCCcCccc------------------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc-ccCccC
Q 034037 45 FAMPCGVCKGKGF------------------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-QRCLNC 99 (105)
Q Consensus 45 ~~~~C~~C~GsG~------------------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-~~C~~C 99 (105)
..+.|+.|+|+|. ..|+.|+|+|.++. ..+||.|.|+|+ ..|..|
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v----------~~~c~~c~G~gkv~~c~~c 86 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV----------YDTCPECGGTGKVLTCDIC 86 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE----------EeecccCCCceeEEeeccc
Confidence 4567888888881 37888888887754 347888888887 344444
No 39
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00038 Score=55.29 Aligned_cols=53 Identities=25% Similarity=0.491 Sum_probs=44.0
Q ss_pred CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCcccccccCccCC
Q 034037 45 FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCL 100 (105)
Q Consensus 45 ~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~~C~~C~ 100 (105)
....|+.|.|.+.+.|..|+|+=.+..+ ........+|+.|+=.|.++|+.|.
T Consensus 228 ~~~~C~~CGg~rFlpC~~C~GS~kv~~~---~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 228 GGGVCESCGGARFLPCSNCHGSCKVHEE---EEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCcCCCcCCcceEecCCCCCceeeeee---ccCCCcEEECcccCCCCceeCCccC
Confidence 3478999999999999999999988763 1112356899999999999999995
No 40
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.20 E-value=0.00025 Score=57.64 Aligned_cols=38 Identities=29% Similarity=0.672 Sum_probs=31.7
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 217 (372)
T PRK14296 165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----------KNKCKNCKGKGK 217 (372)
T ss_pred CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----------cccccCCCCceE
Confidence 4578999999993 3799999999873 347999999985
No 41
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.18 E-value=0.00024 Score=57.98 Aligned_cols=38 Identities=29% Similarity=0.638 Sum_probs=27.4
Q ss_pred CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 222 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----------TDPCSVCRGQGR 222 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----------CCcCCCCCCcce
Confidence 3567888888884 4788888888652 236888888775
No 42
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.18 E-value=0.00027 Score=57.30 Aligned_cols=38 Identities=32% Similarity=0.721 Sum_probs=27.9
Q ss_pred CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 209 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----------KNPCKKCHGMGR 209 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----------CCCCCCCCCceE
Confidence 3567888888883 3688888888763 236888888876
No 43
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.14 E-value=0.00029 Score=57.32 Aligned_cols=38 Identities=29% Similarity=0.758 Sum_probs=31.4
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 209 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----------ESPCPVCSGTGK 209 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----------CCCCCCCCCccE
Confidence 3578999999993 4799999999763 347999999986
No 44
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.13 E-value=0.001 Score=48.06 Aligned_cols=51 Identities=25% Similarity=0.478 Sum_probs=39.4
Q ss_pred CCcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCcccccccC
Q 034037 44 KFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRC 96 (105)
Q Consensus 44 ~~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~~C 96 (105)
.....|..|.|.+.+.|+.|+|+=.+...... .......||.|+=.|.++|
T Consensus 97 ~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~--~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 97 AGGGVCEGCGGARFVPCSECNGSCKVFAENAT--AAGGFLRCPECNENGLVRC 147 (147)
T ss_pred cCCCCCCCCCCcCeEECCCCCCcceEEeccCc--ccccEEECCCCCccccccC
Confidence 34567999999999999999999988765311 1124578999998888776
No 45
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.12 E-value=0.00032 Score=56.80 Aligned_cols=37 Identities=32% Similarity=0.784 Sum_probs=25.6
Q ss_pred cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 210 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----------SNPCKSCKGKGS 210 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----------CCCCCCCCCCCE
Confidence 467888888773 3688888887652 236888888774
No 46
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.09 E-value=0.00041 Score=48.36 Aligned_cols=33 Identities=33% Similarity=0.897 Sum_probs=24.8
Q ss_pred ccCCCCcCccc------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 47 MPCGVCKGKGF------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 47 ~~C~~C~GsG~------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
..|+.|+|+|. .+|+.|+|+|++ .|+.|.|+|.
T Consensus 53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~--------------~C~~C~G~G~ 97 (111)
T PLN03165 53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL--------------TCTTCQGSGI 97 (111)
T ss_pred cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee--------------eCCCCCCCEE
Confidence 47888888872 368888888852 4888888876
No 47
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.09 E-value=0.00036 Score=57.08 Aligned_cols=38 Identities=32% Similarity=0.736 Sum_probs=26.0
Q ss_pred CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|.|.
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~g~ 237 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----------EDPCEECKGTGV 237 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----------CCcCCCCCCCeE
Confidence 3567888888773 3688888888652 236788877764
No 48
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.09 E-value=0.00038 Score=56.64 Aligned_cols=38 Identities=29% Similarity=0.763 Sum_probs=31.5
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 207 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-----------PDPCHECAGDGR 207 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-----------CCCCCCCCCcee
Confidence 3578999999993 4799999999873 237999999986
No 49
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.08 E-value=0.0016 Score=48.99 Aligned_cols=27 Identities=26% Similarity=0.736 Sum_probs=22.3
Q ss_pred cccCCCCcCccc-----ccCCCCCcccEEEEc
Q 034037 46 AMPCGVCKGKGF-----YICKLCKGNATIEWS 72 (105)
Q Consensus 46 ~~~C~~C~GsG~-----~~C~~C~G~G~i~~~ 72 (105)
...|+.|+|+|. ..|+.|+|+|+++..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 678999999994 359999999998764
No 50
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.06 E-value=0.00044 Score=55.87 Aligned_cols=37 Identities=30% Similarity=0.731 Sum_probs=26.8
Q ss_pred cccCCCCcCcccc-----------cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGFY-----------ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~~-----------~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|.+ +|+.|+|+|.+. ..+|+.|.|+|.
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 206 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----------KDPCKKCHGQGR 206 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----------CCCCCCCCCCce
Confidence 4578888888843 588888888752 236888888875
No 51
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.04 E-value=0.00045 Score=56.10 Aligned_cols=37 Identities=32% Similarity=0.797 Sum_probs=26.8
Q ss_pred cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 214 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----------SNPCKTCGGQGL 214 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----------cccCCCCCCCcE
Confidence 467888888883 3688888888763 236888888875
No 52
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.04 E-value=0.00041 Score=56.32 Aligned_cols=37 Identities=30% Similarity=0.877 Sum_probs=27.3
Q ss_pred cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 208 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----------THPCPKCKGSGI 208 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----------CCCCCCCCCCce
Confidence 467888888883 4688888888762 236888888875
No 53
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.03 E-value=0.00043 Score=56.22 Aligned_cols=38 Identities=32% Similarity=0.698 Sum_probs=31.5
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 211 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----------KEKCPTCHGKGK 211 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----------cCCCCCCCCceE
Confidence 4678999999983 3799999999863 347999999986
No 54
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.99 E-value=0.00055 Score=55.40 Aligned_cols=38 Identities=29% Similarity=0.661 Sum_probs=31.4
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|.|.
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 220 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----------GEYCHECGGSGR 220 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----------CCCCCCCCCcee
Confidence 3578999999993 3799999999862 347999999985
No 55
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.97 E-value=0.00065 Score=55.12 Aligned_cols=37 Identities=30% Similarity=0.781 Sum_probs=23.4
Q ss_pred cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 203 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----------KTPCQACKGKTY 203 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----------cccCccCCCcce
Confidence 456777777773 3577777777652 235777777664
No 56
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.97 E-value=0.00057 Score=55.26 Aligned_cols=38 Identities=32% Similarity=0.825 Sum_probs=31.9
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|.|++. ..+|+.|+|+|.
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 216 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----------EEKCPRCNGTGT 216 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----------cCCCCCCCCcee
Confidence 4678999999993 4799999999872 348999999986
No 57
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.96 E-value=0.00067 Score=56.23 Aligned_cols=40 Identities=30% Similarity=0.750 Sum_probs=32.6
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++.. ...+|+.|+|+|.
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~---------~~~~C~~C~G~g~ 219 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP---------ESKKCKNCSGKGV 219 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc---------ccccCCcCCCcce
Confidence 4678999999993 37999999998743 2348999999986
No 58
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.95 E-value=0.00052 Score=55.78 Aligned_cols=38 Identities=32% Similarity=0.734 Sum_probs=31.6
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. ..|+.|+|+|++. ...|+.|.|+|.
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 222 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----------KKKCKKCGGEGI 222 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----------CcCCCCCCCCcE
Confidence 4688999999994 3699999999763 347999999986
No 59
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.94 E-value=0.00059 Score=55.74 Aligned_cols=37 Identities=32% Similarity=0.681 Sum_probs=27.3
Q ss_pred cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 230 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----------DDPCLVCKGSGR 230 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----------ccCCCCCCCCce
Confidence 567888888873 4788888888763 236888888775
No 60
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.91 E-value=0.00072 Score=54.18 Aligned_cols=37 Identities=32% Similarity=0.745 Sum_probs=31.2
Q ss_pred cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|++. ...|+.|.|+|.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 211 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-----------KEPCSTCKGKGR 211 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-----------CCCCCCCCCCcE
Confidence 678999999983 4799999999863 237999999986
No 61
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.89 E-value=0.00057 Score=55.56 Aligned_cols=38 Identities=32% Similarity=0.802 Sum_probs=31.3
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 214 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----------KEPCQTCHGTGH 214 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----------cCCCCCCCCceE
Confidence 3578999999983 3799999999763 347999999986
No 62
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.88 E-value=0.00075 Score=54.57 Aligned_cols=37 Identities=30% Similarity=0.727 Sum_probs=28.0
Q ss_pred cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|.|.
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 208 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----------VSPCKTCHGQGR 208 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----------CcCCCCCCCceE
Confidence 567888888883 4688888888762 236888888875
No 63
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.87 E-value=0.00083 Score=54.98 Aligned_cols=38 Identities=29% Similarity=0.756 Sum_probs=31.6
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|.|.
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 230 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----------KDRCPACYGEGI 230 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----------CCCCCCCCCCcc
Confidence 4678999999993 3699999999873 237999999986
No 64
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.83 E-value=0.00074 Score=54.86 Aligned_cols=37 Identities=27% Similarity=0.699 Sum_probs=30.8
Q ss_pred cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 216 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----------EDPCNKCHGKGK 216 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----------CCCCCCCCCCeE
Confidence 578999999983 3799999999863 247999999984
No 65
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.81 E-value=0.00089 Score=54.55 Aligned_cols=38 Identities=32% Similarity=0.735 Sum_probs=31.5
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 223 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-----------TDPCNKCGGTGR 223 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-----------cCCCCCCCCCcE
Confidence 3678999999983 3799999999873 237999999986
No 66
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.73 E-value=0.00071 Score=50.91 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=15.9
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
.+|+.|+|+|.+... ..+|+.|+|+|+
T Consensus 100 ~~C~~C~G~G~~i~~---------~~~C~~C~G~G~ 126 (186)
T TIGR02642 100 CKCPRCRGTGLIQRR---------QRECDTCAGTGR 126 (186)
T ss_pred CcCCCCCCeeEEecC---------CCCCCCCCCccE
Confidence 467777777665331 136666666665
No 67
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.63 E-value=0.0012 Score=53.68 Aligned_cols=38 Identities=32% Similarity=0.736 Sum_probs=31.3
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 206 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----------KQKCATCGGKGK 206 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----------cccCCCCCCeeE
Confidence 4678999999993 4799999999863 347999999885
No 68
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.62 E-value=0.0016 Score=52.78 Aligned_cols=38 Identities=29% Similarity=0.686 Sum_probs=31.3
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|++. ..+|+.|.|+|.
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 211 (374)
T PRK14293 159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----------EDPCDACGGQGV 211 (374)
T ss_pred CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----------ccCCCCCCCCcc
Confidence 3578999999994 3699999999863 237999999986
No 69
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.61 E-value=0.0016 Score=53.07 Aligned_cols=37 Identities=27% Similarity=0.682 Sum_probs=28.1
Q ss_pred CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+ ...|+.|+|.|.
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------------~~~C~~C~G~g~ 219 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------------REPCSKCNGRGL 219 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceEE------------ccCCCCCCCCce
Confidence 3578999999883 479999999853 136899998875
No 70
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0024 Score=51.88 Aligned_cols=38 Identities=32% Similarity=0.719 Sum_probs=31.3
Q ss_pred CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
....|+.|+|+|. .+|+.|+|+|.+. ..+|..|.|+|.
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 214 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----------EKPCSNCHGKGV 214 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----------CCCCCCCCCcee
Confidence 4678999999984 3699999999763 347999999986
No 71
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.34 E-value=0.0028 Score=51.28 Aligned_cols=37 Identities=30% Similarity=0.760 Sum_probs=31.0
Q ss_pred cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|+.|+|+|. .+|+.|+|.|++. ..+|+.|.|+|.
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~ 208 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----------TDPCTVCRGRGR 208 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------CCCCCCCCCceE
Confidence 678999999994 3699999999762 358999999985
No 72
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.016 Score=45.86 Aligned_cols=56 Identities=30% Similarity=0.615 Sum_probs=42.3
Q ss_pred cccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCcccccc---cCccCCcccc
Q 034037 46 AMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ---RCLNCLGKGF 104 (105)
Q Consensus 46 ~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~---~C~~C~G~G~ 104 (105)
...|..|.|.|. ..|+.|.|+|.+...... .+... +|..|.++|.. .|..|.|.|.
T Consensus 164 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~ 228 (288)
T KOG0715|consen 164 LSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKED--PFILY-TCSYCLGRGLVLRDNCQACSGAGQ 228 (288)
T ss_pred ecccccccCcCcccccccccchhhhCcccccccccC--Cccee-ecccccccceeccchHHHhhcchh
Confidence 578999999993 689999999976553211 12222 89999999983 5999999873
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.03 Score=45.66 Aligned_cols=44 Identities=30% Similarity=0.696 Sum_probs=34.3
Q ss_pred hcCCCcccCCCCcCccc----------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 41 KRKKFAMPCGVCKGKGF----------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 41 ~~~~~~~~C~~C~GsG~----------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
.++.....|+.|.|+|. .+|..|+|+|... .....|+.|.|++.
T Consensus 138 gksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~---------~~kd~C~~C~G~~~ 197 (337)
T KOG0712|consen 138 GKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI---------SLKDRCKTCSGAKV 197 (337)
T ss_pred CCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc---------cccccCcccccchh
Confidence 34556678999999992 5899999999751 23458999999986
No 74
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.68 E-value=0.09 Score=47.71 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=24.4
Q ss_pred cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
.|+.|+|.|.++....+.+. ...+||.|+|+..
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~--~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPD--VYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccCCCC--cccCCCCcCCcee
Confidence 59999999999876444332 4678999988865
No 75
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=90.58 E-value=0.21 Score=45.56 Aligned_cols=33 Identities=27% Similarity=0.641 Sum_probs=23.6
Q ss_pred cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
.|+.|+|.|.++....+.+. ...+||.|+|+..
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~--~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPD--VYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEEEEeccCCC--ccccCccccCccc
Confidence 59999999988876443332 4568888888764
No 76
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=89.87 E-value=0.24 Score=47.97 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=24.6
Q ss_pred cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
.|+.|+|.|.++....+.+. ...+|+.|+|+..
T Consensus 1609 rC~~C~G~G~i~i~m~fl~d--v~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYAL--EKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecccCCC--cccCCCCCCCcCC
Confidence 59999999998876443322 5678999999865
No 77
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=89.33 E-value=0.44 Score=35.79 Aligned_cols=47 Identities=34% Similarity=0.911 Sum_probs=34.6
Q ss_pred ccCCCCcCcccccCCCCCcccEEEEccCCCCccc-cceeCCCCccccc------ccCccCC
Q 034037 47 MPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFI-NPCLCPTCEGNRV------QRCLNCL 100 (105)
Q Consensus 47 ~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~-~~~~Cp~C~G~G~------~~C~~C~ 100 (105)
..|+.|.++|. .|..|+....| +|... ....|+.|+.-=. .+||+|.
T Consensus 143 ~~C~lC~~kGf-iCe~C~~~~~I------fPF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 143 YSCELCQQKGF-ICEICNSDDII------FPFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHhHHHHhCCC-CCccCCCCCCC------CCCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 38999999986 89999877543 34333 6788999987532 5788885
No 78
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=88.74 E-value=0.2 Score=39.19 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=22.9
Q ss_pred cccCCCCcCcccccCCCCCcccEEEEc
Q 034037 46 AMPCGVCKGKGFYICKLCKGNATIEWS 72 (105)
Q Consensus 46 ~~~C~~C~GsG~~~C~~C~G~G~i~~~ 72 (105)
..++..-.|.+..+||+|+|+|+|.++
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCcc
Confidence 567777888889999999999999664
No 79
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=88.71 E-value=0.37 Score=43.81 Aligned_cols=33 Identities=27% Similarity=0.635 Sum_probs=25.5
Q ss_pred cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
+|..|+|.|.++.+-.+.|. ...+|+.|+|+..
T Consensus 732 RCe~C~GdG~ikIeM~FLpd--Vyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPD--VYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCCC--ceeeCCCcCCccc
Confidence 79999999999887554443 5678999999754
No 80
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=85.07 E-value=0.48 Score=34.17 Aligned_cols=35 Identities=31% Similarity=0.777 Sum_probs=27.9
Q ss_pred ccccCCCCCcccEEEEccCCCCccccceeCCCCccccc------------ccCccCCcccc
Q 034037 56 GFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV------------QRCLNCLGKGF 104 (105)
Q Consensus 56 G~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~------------~~C~~C~G~G~ 104 (105)
+...|..|.|.+.+ +|+.|+|+-+ .+|+.|+=+|.
T Consensus 98 ~~~~C~~Cgg~rfv--------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl 144 (147)
T cd03031 98 GGGVCEGCGGARFV--------------PCSECNGSCKVFAENATAAGGFLRCPECNENGL 144 (147)
T ss_pred CCCCCCCCCCcCeE--------------ECCCCCCcceEEeccCcccccEEECCCCCcccc
Confidence 34569999998876 8999999854 38999997774
No 81
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.67 E-value=1.9 Score=36.43 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhc--------CC--CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc--c
Q 034037 27 STITLGALRAASEAKR--------KK--FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV--Q 94 (105)
Q Consensus 27 s~~a~~~~~~~~~~~~--------~~--~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~--~ 94 (105)
|-.++.+++..++.++ +. ....|..|.- ...|+.|++.=..... .....|+.|+-+-. .
T Consensus 184 s~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~--~~~C~~C~~~l~~h~~-------~~~l~Ch~Cg~~~~~~~ 254 (505)
T TIGR00595 184 SPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGY--ILCCPNCDVSLTYHKK-------EGKLRCHYCGYQEPIPK 254 (505)
T ss_pred cHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcC--ccCCCCCCCceEEecC-------CCeEEcCCCcCcCCCCC
Confidence 3445555555555432 11 1357888832 4789999875433322 13557888887765 4
Q ss_pred cCccCCcc
Q 034037 95 RCLNCLGK 102 (105)
Q Consensus 95 ~C~~C~G~ 102 (105)
.||+|.+.
T Consensus 255 ~Cp~C~s~ 262 (505)
T TIGR00595 255 TCPQCGSE 262 (505)
T ss_pred CCCCCCCC
Confidence 78888764
No 82
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.82 E-value=0.72 Score=42.03 Aligned_cols=22 Identities=36% Similarity=0.896 Sum_probs=19.1
Q ss_pred eeCCCCccccc------------ccCccCCcccc
Q 034037 83 CLCPTCEGNRV------------QRCLNCLGKGF 104 (105)
Q Consensus 83 ~~Cp~C~G~G~------------~~C~~C~G~G~ 104 (105)
-.||.|+|.|. .+|+.|+|+.|
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 46999999997 39999999876
No 83
>PF14353 CpXC: CpXC protein
Probab=82.06 E-value=1.2 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=23.9
Q ss_pred ccCCCCCcccEEEEccCCC----Cc--------cccceeCCCCccccc
Q 034037 58 YICKLCKGNATIEWSPLYD----PV--------FINPCLCPTCEGNRV 93 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~----g~--------~~~~~~Cp~C~G~G~ 93 (105)
++||.|+-...+......+ +. -....+||.|+....
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 5799999988876532211 11 115789999998765
No 84
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=81.84 E-value=2.3 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
+.||.|+|..+..+....+........|+.|+.++.
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~ 37 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGP 37 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCcc
Confidence 468889888873221111111112337888887764
No 85
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=81.14 E-value=3.5 Score=36.90 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHH--------hcCC--CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc--
Q 034037 26 ASTITLGALRAASEA--------KRKK--FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-- 93 (105)
Q Consensus 26 ~s~~a~~~~~~~~~~--------~~~~--~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-- 93 (105)
+|-..+.+++..+++ |++- ....|..|.- ...|++|...=..... .....|+.|+-...
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~--v~~Cp~Cd~~lt~H~~-------~~~L~CH~Cg~~~~~p 475 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGY--IAECPNCDSPLTLHKA-------TGQLRCHYCGYQEPIP 475 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCC--cccCCCCCcceEEecC-------CCeeEeCCCCCCCCCC
Confidence 455667777766666 3333 2578999922 3689999976433222 25668999988855
Q ss_pred ccCccCCcc
Q 034037 94 QRCLNCLGK 102 (105)
Q Consensus 94 ~~C~~C~G~ 102 (105)
..||+|.+.
T Consensus 476 ~~Cp~Cgs~ 484 (730)
T COG1198 476 QSCPECGSE 484 (730)
T ss_pred CCCCCCCCC
Confidence 589999865
No 86
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.76 E-value=1.1 Score=35.96 Aligned_cols=34 Identities=32% Similarity=0.817 Sum_probs=26.6
Q ss_pred cccCCCCCcccEEEEccCCCCccccceeCCCCccccc-----------ccCccCCcccc
Q 034037 57 FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-----------QRCLNCLGKGF 104 (105)
Q Consensus 57 ~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-----------~~C~~C~G~G~ 104 (105)
...|..|.|.+++ +|..|+|+-+ .+|+.|+=+|.
T Consensus 229 ~~~C~~CGg~rFl--------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGL 273 (281)
T KOG2824|consen 229 GGVCESCGGARFL--------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGL 273 (281)
T ss_pred CCcCCCcCCcceE--------------ecCCCCCceeeeeeccCCCcEEECcccCCCCc
Confidence 3579999988765 8999999854 48999987764
No 87
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=76.21 E-value=1.6 Score=39.98 Aligned_cols=23 Identities=35% Similarity=0.817 Sum_probs=19.4
Q ss_pred ceeCCCCccccc------------ccCccCCcccc
Q 034037 82 PCLCPTCEGNRV------------QRCLNCLGKGF 104 (105)
Q Consensus 82 ~~~Cp~C~G~G~------------~~C~~C~G~G~ 104 (105)
.-.||.|+|.|. .+|+.|+|+.+
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCccc
Confidence 346999999997 38999999876
No 88
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=72.75 E-value=2.3 Score=41.60 Aligned_cols=23 Identities=26% Similarity=0.578 Sum_probs=19.2
Q ss_pred ceeCCCCccccc------------ccCccCCcccc
Q 034037 82 PCLCPTCEGNRV------------QRCLNCLGKGF 104 (105)
Q Consensus 82 ~~~Cp~C~G~G~------------~~C~~C~G~G~ 104 (105)
.-.||.|+|.|. .+|+.|+|+.|
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 446999999996 38999999876
No 89
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=71.81 E-value=4.1 Score=29.82 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=22.1
Q ss_pred cCCCCCcccEEEEc----cCCCCccccceeCCCCccc
Q 034037 59 ICKLCKGNATIEWS----PLYDPVFINPCLCPTCEGN 91 (105)
Q Consensus 59 ~C~~C~G~G~i~~~----~~~~g~~~~~~~Cp~C~G~ 91 (105)
.|+.|+..|..+.. +.+.-.......|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 38 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYR 38 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCc
Confidence 58999988876553 2222234468899999865
No 90
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=70.88 E-value=2.2 Score=33.43 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=9.3
Q ss_pred cceeCCCCcccccc
Q 034037 81 NPCLCPTCEGNRVQ 94 (105)
Q Consensus 81 ~~~~Cp~C~G~G~~ 94 (105)
...+||+|+|+|++
T Consensus 37 ~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 37 DSVTCPTCQGTGRI 50 (238)
T ss_pred CCCcCCCCcCCccC
Confidence 34577777777764
No 91
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=69.77 E-value=3 Score=23.18 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=15.4
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCE 89 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~ 89 (105)
++||.|+-.-.|...+.. .-.....||.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~--~~~~~vrC~~C~ 32 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLP--AGGRKVRCPKCG 32 (37)
T ss_pred EECCCCCceEEcCHHHcc--cCCcEEECCCCC
Confidence 467777766555443221 112355666664
No 92
>PRK04023 DNA polymerase II large subunit; Validated
Probab=67.11 E-value=5.6 Score=37.15 Aligned_cols=45 Identities=20% Similarity=0.490 Sum_probs=31.8
Q ss_pred CcccCCCCcCcc-cccCCCCCcccEEEEccCCCCccccceeCCCCccccc-ccCccCCc
Q 034037 45 FAMPCGVCKGKG-FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-QRCLNCLG 101 (105)
Q Consensus 45 ~~~~C~~C~GsG-~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-~~C~~C~G 101 (105)
....|+.|.-.. ...|+.|+..= .....||.|.-... .+|++|.-
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~T------------e~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHT------------EPVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCC------------CcceeCccccCcCCCCcCCCCCC
Confidence 356899997776 46899998761 12347999966554 57999974
No 93
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=66.78 E-value=6.2 Score=29.73 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=22.5
Q ss_pred cCCCCCcccEEEEccCC----CC-ccccceeCCCCccc
Q 034037 59 ICKLCKGNATIEWSPLY----DP-VFINPCLCPTCEGN 91 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~~----~g-~~~~~~~Cp~C~G~ 91 (105)
.|+.|+..|..+..... |+ .+.....|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 68999988887653222 22 23368899999865
No 94
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=65.32 E-value=8.2 Score=21.18 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=15.1
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCcc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEG 90 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G 90 (105)
..|+.|++.+.+...+ ....|+.|+-
T Consensus 4 ~~C~~C~~~~i~~~~~-------~~~~C~~Cg~ 29 (33)
T PF08792_consen 4 KKCSKCGGNGIVNKED-------DYEVCIFCGS 29 (33)
T ss_pred eEcCCCCCCeEEEecC-------CeEEcccCCc
Confidence 4577777777663322 2346777753
No 95
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=65.20 E-value=4.9 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.576 Sum_probs=21.6
Q ss_pred CcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 54 GKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 54 GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
|.|...|..|+-.=.++... .-.+||.|++.-.
T Consensus 109 g~G~l~C~~Cg~~~~~~~~~-------~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTHPE-------RLPPCPKCGHTEF 141 (146)
T ss_pred cCceEecccCCCEEEecCCC-------cCCCCCCCCCCee
Confidence 56678899998654443321 3458999988754
No 96
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=64.77 E-value=8.2 Score=22.99 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=16.5
Q ss_pred ccCCCCCcccEEEEccCC-CCc-cccceeCCCCcc
Q 034037 58 YICKLCKGNATIEWSPLY-DPV-FINPCLCPTCEG 90 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~-~g~-~~~~~~Cp~C~G 90 (105)
+.||.| |.-.+...... ... +...+.|..|+.
T Consensus 4 kPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred cCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 457778 66655543221 110 014566888865
No 97
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=63.27 E-value=12 Score=21.12 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=21.2
Q ss_pred cCCCCCcccEEEEccC---CCCccccceeCCCCcc
Q 034037 59 ICKLCKGNATIEWSPL---YDPVFINPCLCPTCEG 90 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~---~~g~~~~~~~Cp~C~G 90 (105)
.|+.|+....+..+.+ .+..|.....|..|+-
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCC
Confidence 5899987777765422 2334566778888863
No 98
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=61.28 E-value=5.8 Score=28.92 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=19.0
Q ss_pred ccCCCCCcccEEEEc----cCCCCccccceeCCCCccc
Q 034037 58 YICKLCKGNATIEWS----PLYDPVFINPCLCPTCEGN 91 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~----~~~~g~~~~~~~Cp~C~G~ 91 (105)
..|+.|+..|..+.. +.+.-.......|+.|+=+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 39 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYK 39 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--E
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCE
Confidence 368999999876553 2222233467789999755
No 99
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=61.10 E-value=12 Score=20.98 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=19.3
Q ss_pred cCCCCCcccEEEEccC---CCCccccceeCCCCcc
Q 034037 59 ICKLCKGNATIEWSPL---YDPVFINPCLCPTCEG 90 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~---~~g~~~~~~~Cp~C~G 90 (105)
.|+.|+.+..+..+.+ .+..+.....|..|+-
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~ 36 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGH 36 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTE
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCC
Confidence 6899999887766422 2334566777888863
No 100
>PRK14873 primosome assembly protein PriA; Provisional
Probab=60.65 E-value=19 Score=31.77 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHh-------cCC--CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc-cc
Q 034037 26 ASTITLGALRAASEAK-------RKK--FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-QR 95 (105)
Q Consensus 26 ~s~~a~~~~~~~~~~~-------~~~--~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-~~ 95 (105)
+|..++.+++..++++ ++- ....|..|.- ...|++|++.=...... ....|+.|+-.-. ..
T Consensus 354 ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~--~~~C~~C~~~L~~h~~~-------~~l~Ch~CG~~~~p~~ 424 (665)
T PRK14873 354 LPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRT--PARCRHCTGPLGLPSAG-------GTPRCRWCGRAAPDWR 424 (665)
T ss_pred cCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcC--eeECCCCCCceeEecCC-------CeeECCCCcCCCcCcc
Confidence 5667778888777763 332 2457888822 47899999865543221 3457888876532 47
Q ss_pred CccCCcc
Q 034037 96 CLNCLGK 102 (105)
Q Consensus 96 C~~C~G~ 102 (105)
||+|.+.
T Consensus 425 Cp~Cgs~ 431 (665)
T PRK14873 425 CPRCGSD 431 (665)
T ss_pred CCCCcCC
Confidence 8888765
No 101
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=59.03 E-value=15 Score=30.38 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=12.2
Q ss_pred hhhhhhchhhhHHHHHHHHH
Q 034037 12 TAAIIFGGFVTLNVASTITL 31 (105)
Q Consensus 12 ~~~~~~g~~v~lt~~s~~a~ 31 (105)
.+.+.+++++.|+++....+
T Consensus 174 ~g~~aF~~~vvl~~~~~~~~ 193 (403)
T TIGR00155 174 SSLLPFCLFCVLTTRAFQCL 193 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45666777777776554443
No 102
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=58.00 E-value=7.7 Score=21.09 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=15.6
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCcc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEG 90 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G 90 (105)
..|+.|+-.=++...+... -.....||.|+.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~--~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGA--NGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCC--CCCEEECCCCCC
Confidence 4577777654443322211 112467777764
No 103
>PRK11032 hypothetical protein; Provisional
Probab=55.40 E-value=8.1 Score=28.48 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=20.9
Q ss_pred CcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 54 GKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 54 GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
|.|..+|..|+=.=.++... ...+||.|++.-.
T Consensus 121 g~G~LvC~~Cg~~~~~~~p~-------~i~pCp~C~~~~F 153 (160)
T PRK11032 121 GLGNLVCEKCHHHLAFYTPE-------VLPLCPKCGHDQF 153 (160)
T ss_pred ecceEEecCCCCEEEecCCC-------cCCCCCCCCCCee
Confidence 45568898887554443321 3458888888754
No 104
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=55.15 E-value=18 Score=20.62 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=6.7
Q ss_pred ceeCCCCccc
Q 034037 82 PCLCPTCEGN 91 (105)
Q Consensus 82 ~~~Cp~C~G~ 91 (105)
...||.|+.+
T Consensus 21 ~~~Cp~CG~~ 30 (46)
T PRK00398 21 GVRCPYCGYR 30 (46)
T ss_pred ceECCCCCCe
Confidence 5677777654
No 105
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=54.73 E-value=7.1 Score=35.89 Aligned_cols=22 Identities=36% Similarity=0.899 Sum_probs=19.1
Q ss_pred eeCCCCccccc------------ccCccCCcccc
Q 034037 83 CLCPTCEGNRV------------QRCLNCLGKGF 104 (105)
Q Consensus 83 ~~Cp~C~G~G~------------~~C~~C~G~G~ 104 (105)
-+|+.|+|.|. .+|+.|+|+-|
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 47999999997 39999999865
No 106
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=54.16 E-value=11 Score=33.29 Aligned_cols=42 Identities=24% Similarity=0.609 Sum_probs=27.5
Q ss_pred ccCCCCcCc---ccccCCCCCcccEEEEccCCCCccccceeCCCCccc---ccccCccCCc
Q 034037 47 MPCGVCKGK---GFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGN---RVQRCLNCLG 101 (105)
Q Consensus 47 ~~C~~C~Gs---G~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~---G~~~C~~C~G 101 (105)
..|+.|+.. +.+-|+.|+.+- ....||.|+-. +...|++|.-
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l-------------~~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSL-------------THKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCC-------------CCCcCCCCCCCCCcccccccccCC
Confidence 468888544 357799995432 12368888775 4468888863
No 107
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=53.53 E-value=17 Score=34.86 Aligned_cols=43 Identities=21% Similarity=0.499 Sum_probs=29.5
Q ss_pred ccCCCCcCcc-cccCCCCCcccEEEEccCCCCccccceeCCCCcccc------cccCccCCc
Q 034037 47 MPCGVCKGKG-FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNR------VQRCLNCLG 101 (105)
Q Consensus 47 ~~C~~C~GsG-~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G------~~~C~~C~G 101 (105)
..|+.|.... ...|+.|+.+=. ....||.|+..= ...||.|.-
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te------------~vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTE------------PVYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EECCCCCCccccccCcccCCcCC------------CceeCccCCCccCCCccccccCCCCCC
Confidence 6899998765 358999986521 123788888741 237888874
No 108
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=53.51 E-value=13 Score=20.73 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=7.4
Q ss_pred cceeCCCCccc
Q 034037 81 NPCLCPTCEGN 91 (105)
Q Consensus 81 ~~~~Cp~C~G~ 91 (105)
....||.|+|.
T Consensus 18 ~id~C~~C~G~ 28 (41)
T PF13453_consen 18 EIDVCPSCGGI 28 (41)
T ss_pred EEEECCCCCeE
Confidence 45568888773
No 109
>PRK05580 primosome assembly protein PriA; Validated
Probab=50.43 E-value=35 Score=30.00 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhc--------CC--CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc--
Q 034037 26 ASTITLGALRAASEAKR--------KK--FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-- 93 (105)
Q Consensus 26 ~s~~a~~~~~~~~~~~~--------~~--~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-- 93 (105)
+|..++..++..++.++ +. ....|..|.- ...|+.|++.=..... .....|+.|+-+-.
T Consensus 351 ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~--~~~C~~C~~~l~~h~~-------~~~l~Ch~Cg~~~~~~ 421 (679)
T PRK05580 351 LSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGW--VAECPHCDASLTLHRF-------QRRLRCHHCGYQEPIP 421 (679)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcC--ccCCCCCCCceeEECC-------CCeEECCCCcCCCCCC
Confidence 45566666766665532 21 2567888832 3689999984322211 24557999987765
Q ss_pred ccCccCCcc
Q 034037 94 QRCLNCLGK 102 (105)
Q Consensus 94 ~~C~~C~G~ 102 (105)
..||+|.+.
T Consensus 422 ~~Cp~Cg~~ 430 (679)
T PRK05580 422 KACPECGST 430 (679)
T ss_pred CCCCCCcCC
Confidence 479999764
No 110
>PF14369 zf-RING_3: zinc-finger
Probab=49.99 E-value=18 Score=19.98 Aligned_cols=7 Identities=57% Similarity=1.720 Sum_probs=4.3
Q ss_pred eCCCCcc
Q 034037 84 LCPTCEG 90 (105)
Q Consensus 84 ~Cp~C~G 90 (105)
.||.|+|
T Consensus 23 ~CP~C~~ 29 (35)
T PF14369_consen 23 ACPRCHG 29 (35)
T ss_pred CCcCCCC
Confidence 4666664
No 111
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=49.37 E-value=9.3 Score=25.65 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=17.6
Q ss_pred cCCCCCcccEEEEc---cCCCCccccceeCCCCccccc
Q 034037 59 ICKLCKGNATIEWS---PLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 59 ~C~~C~G~G~i~~~---~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
.|..|+|.|.+.-. ...+| +.....|++|.|+|.
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G-~pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFG-VPVFKDCERCGGRGY 43 (95)
T ss_pred CcCccCCcceeccHHHhHhccC-CchhhhhhhhcCCCC
Confidence 46666776644221 11111 224457777777775
No 112
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=49.27 E-value=30 Score=24.35 Aligned_cols=22 Identities=27% Similarity=0.615 Sum_probs=12.0
Q ss_pred CCCcccCCCCcCcc-----cccCCCCC
Q 034037 43 KKFAMPCGVCKGKG-----FYICKLCK 64 (105)
Q Consensus 43 ~~~~~~C~~C~GsG-----~~~C~~C~ 64 (105)
+...+.||+|+-.= ...|..|+
T Consensus 66 kav~V~CP~C~K~TKmLGr~D~CM~C~ 92 (114)
T PF11023_consen 66 KAVQVECPNCGKQTKMLGRVDACMHCK 92 (114)
T ss_pred cceeeECCCCCChHhhhchhhccCcCC
Confidence 44566777774322 23566665
No 113
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=48.15 E-value=29 Score=28.91 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=8.3
Q ss_pred hhhhchhhhHHHHHHHH
Q 034037 14 AIIFGGFVTLNVASTIT 30 (105)
Q Consensus 14 ~~~~g~~v~lt~~s~~a 30 (105)
...++.++.|++++...
T Consensus 174 ~~af~~~~ll~~~~~~~ 190 (419)
T PRK15103 174 FIPWCLFCLLQLRAFQC 190 (419)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33455555555544333
No 114
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=45.75 E-value=20 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.600 Sum_probs=19.9
Q ss_pred CCCCCcccEEEE-c----cCCCCccccceeCCCCccc
Q 034037 60 CKLCKGNATIEW-S----PLYDPVFINPCLCPTCEGN 91 (105)
Q Consensus 60 C~~C~G~G~i~~-~----~~~~g~~~~~~~Cp~C~G~ 91 (105)
||.|++.+.... . +.+.-.......|+.|+=+
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 37 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYR 37 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCc
Confidence 888888765442 1 2222234468899999865
No 115
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.66 E-value=12 Score=31.68 Aligned_cols=36 Identities=25% Similarity=0.636 Sum_probs=20.3
Q ss_pred CCcccCCCCcCc-------ccccCCCCCcccEEEEccCCCCccccceeCCCCccc
Q 034037 44 KFAMPCGVCKGK-------GFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGN 91 (105)
Q Consensus 44 ~~~~~C~~C~Gs-------G~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~ 91 (105)
.....|++|++. +...|+.|+-+= .....||.|++.
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~------------~~~~~Cp~C~s~ 262 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQE------------PIPKTCPQCGSE 262 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcC------------CCCCCCCCCCCC
Confidence 345577777632 245677776321 123467777764
No 116
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=45.53 E-value=6.9 Score=35.87 Aligned_cols=44 Identities=20% Similarity=0.566 Sum_probs=0.0
Q ss_pred cccCCCCcCcc-cccCCCCCcccEEEEccCCCCccccceeCCCCccccc-ccCccCCc
Q 034037 46 AMPCGVCKGKG-FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-QRCLNCLG 101 (105)
Q Consensus 46 ~~~C~~C~GsG-~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-~~C~~C~G 101 (105)
...|+.|.-.. ..+|+.|+..=. ....||.|+-.-. ..|++|.-
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~------------~~~~Cp~C~~~~~~~~C~~C~~ 700 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTE------------PVYVCPDCGIEVEEDECPKCGR 700 (900)
T ss_dssp ----------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCccc------------cceeccccccccCccccccccc
Confidence 35788886666 467888875432 2336888877644 57888764
No 117
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=43.61 E-value=15 Score=20.26 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=13.9
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCE 89 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~ 89 (105)
++|+.|+-.=.|.-+... .-.....|+.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip--~~g~~v~C~~C~ 32 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIP--PKGRKVRCSKCG 32 (36)
T ss_pred EECCCCCCEEeCCHHHCC--CCCcEEECCCCC
Confidence 456667655444332211 111345666664
No 118
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=42.67 E-value=15 Score=30.68 Aligned_cols=13 Identities=31% Similarity=0.933 Sum_probs=9.2
Q ss_pred cceeCCCCccccc
Q 034037 81 NPCLCPTCEGNRV 93 (105)
Q Consensus 81 ~~~~Cp~C~G~G~ 93 (105)
...+||.|+|+|+
T Consensus 389 ~~~~Cp~C~G~G~ 401 (414)
T TIGR00757 389 LGTVCPHCSGTGI 401 (414)
T ss_pred hcCCCCCCcCeeE
Confidence 4567777777776
No 119
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=42.19 E-value=20 Score=20.58 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=6.8
Q ss_pred ccCCCCCcccEEE
Q 034037 58 YICKLCKGNATIE 70 (105)
Q Consensus 58 ~~C~~C~G~G~i~ 70 (105)
..||.|.|+...+
T Consensus 4 ~pCP~CGG~DrFr 16 (40)
T PF08273_consen 4 GPCPICGGKDRFR 16 (40)
T ss_dssp E--TTTT-TTTEE
T ss_pred CCCCCCcCccccc
Confidence 3577777777665
No 120
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=41.80 E-value=23 Score=29.01 Aligned_cols=21 Identities=48% Similarity=1.129 Sum_probs=9.6
Q ss_pred cCCCCcCcccccCCCCCcccEEEE
Q 034037 48 PCGVCKGKGFYICKLCKGNATIEW 71 (105)
Q Consensus 48 ~C~~C~GsG~~~C~~C~G~G~i~~ 71 (105)
.|..|+|.| |+.|+++|+++.
T Consensus 262 ~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 262 SCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEeccCCCc---ccccCCCCceEE
Confidence 344444443 444455554443
No 121
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=41.15 E-value=16 Score=30.99 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=8.8
Q ss_pred hcCCCcccCCCCc
Q 034037 41 KRKKFAMPCGVCK 53 (105)
Q Consensus 41 ~~~~~~~~C~~C~ 53 (105)
..+-....|++|+
T Consensus 374 ~QrLvr~lCp~C~ 386 (486)
T TIGR02533 374 AQRLVRRLCPHCK 386 (486)
T ss_pred eeecccccCcccc
Confidence 4455567888886
No 122
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.01 E-value=16 Score=32.05 Aligned_cols=39 Identities=21% Similarity=0.545 Sum_probs=22.5
Q ss_pred hcCCCcccCCCCcCc-------ccccCCCCCcccEEEEccCCCCccccceeCCCCccc
Q 034037 41 KRKKFAMPCGVCKGK-------GFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGN 91 (105)
Q Consensus 41 ~~~~~~~~C~~C~Gs-------G~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~ 91 (105)
..=.....|++|++. +...|+.|+-+-. ....||.|++.
T Consensus 385 ~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~------------~~~~Cp~Cg~~ 430 (679)
T PRK05580 385 RDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEP------------IPKACPECGST 430 (679)
T ss_pred hhCcCccCCCCCCCceeEECCCCeEECCCCcCCCC------------CCCCCCCCcCC
Confidence 444455678888754 2356777763321 23467777665
No 123
>PRK00420 hypothetical protein; Validated
Probab=39.97 E-value=17 Score=25.37 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=6.1
Q ss_pred cceeCCCCcc
Q 034037 81 NPCLCPTCEG 90 (105)
Q Consensus 81 ~~~~Cp~C~G 90 (105)
....||.|+-
T Consensus 39 g~~~Cp~Cg~ 48 (112)
T PRK00420 39 GEVVCPVHGK 48 (112)
T ss_pred CceECCCCCC
Confidence 3556777754
No 124
>PRK11712 ribonuclease G; Provisional
Probab=39.49 E-value=20 Score=30.63 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=9.3
Q ss_pred cceeCCCCccccc
Q 034037 81 NPCLCPTCEGNRV 93 (105)
Q Consensus 81 ~~~~Cp~C~G~G~ 93 (105)
...+||.|+|+|.
T Consensus 401 l~~~Cp~C~G~G~ 413 (489)
T PRK11712 401 LCGECPTCHGRGT 413 (489)
T ss_pred hcCCCCCCCCCCC
Confidence 4567788877776
No 125
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.27 E-value=24 Score=30.44 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=7.9
Q ss_pred CCcccCCCCcCcc
Q 034037 44 KFAMPCGVCKGKG 56 (105)
Q Consensus 44 ~~~~~C~~C~GsG 56 (105)
-....|+.|+...
T Consensus 393 Lvr~lC~~C~~~~ 405 (500)
T COG2804 393 LVRRLCPHCKEEC 405 (500)
T ss_pred HHhhhCchhcccc
Confidence 3345777776655
No 126
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=38.06 E-value=20 Score=18.53 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=5.8
Q ss_pred cceeCCCCc
Q 034037 81 NPCLCPTCE 89 (105)
Q Consensus 81 ~~~~Cp~C~ 89 (105)
....||+|+
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 455777774
No 127
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=38.04 E-value=17 Score=31.20 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=6.1
Q ss_pred eeCCCCcccc
Q 034037 83 CLCPTCEGNR 92 (105)
Q Consensus 83 ~~Cp~C~G~G 92 (105)
.-|+.|+|+|
T Consensus 489 ~gC~~C~~~G 498 (564)
T TIGR02538 489 VGCDECSNTG 498 (564)
T ss_pred CCCcccCCCC
Confidence 4566666665
No 128
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=37.41 E-value=54 Score=22.82 Aligned_cols=47 Identities=26% Similarity=0.471 Sum_probs=23.2
Q ss_pred cccCCCCcCccc--------------ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc
Q 034037 46 AMPCGVCKGKGF--------------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 46 ~~~C~~C~GsG~--------------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
...|..|...|. ..|..|...|-.... +.... ......|..|+..|.
T Consensus 27 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~-~~~~~~C~~Cg~~GH 88 (148)
T PTZ00368 27 ARPCYKCGEPGHLSRECPSAPGGRGERSCYNCGKTGHLSRECPEAPP-GSGPRSCYNCGQTGH 88 (148)
T ss_pred CccCccCCCCCcCcccCcCCCCCCCCcccCCCCCcCcCcccCCCccc-CCCCcccCcCCCCCc
Confidence 456666766662 246666666644332 10000 012345777777765
No 129
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=37.03 E-value=38 Score=18.97 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=5.4
Q ss_pred cCCCCCccc
Q 034037 59 ICKLCKGNA 67 (105)
Q Consensus 59 ~C~~C~G~G 67 (105)
.||.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466666655
No 130
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=36.44 E-value=37 Score=27.46 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=7.5
Q ss_pred CcccCCCCcCc
Q 034037 45 FAMPCGVCKGK 55 (105)
Q Consensus 45 ~~~~C~~C~Gs 55 (105)
....||.|.+.
T Consensus 186 ~~~~CPvCGs~ 196 (309)
T PRK03564 186 QRQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCCc
Confidence 34678888665
No 131
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=36.38 E-value=27 Score=19.30 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=11.4
Q ss_pred cCCCCCcccEEEEccCCCCccccceeCCCCc
Q 034037 59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCE 89 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~ 89 (105)
-|+.|.+.=.... + .+.-.....||.|+
T Consensus 2 fC~~CG~~l~~~i-p--~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGPLERRI-P--EGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B-EEE-----TT-SS-EEEETTTT
T ss_pred ccccccChhhhhc-C--CCCCccceECCCCC
Confidence 3777877622221 1 22334667788875
No 132
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=35.40 E-value=31 Score=24.37 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=9.1
Q ss_pred HHhcCCCcccCCCCcCcc
Q 034037 39 EAKRKKFAMPCGVCKGKG 56 (105)
Q Consensus 39 ~~~~~~~~~~C~~C~GsG 56 (105)
+..+......|..|||..
T Consensus 25 ~~G~~~~~~~Ca~CHG~~ 42 (121)
T COG2863 25 ALGKALAAQSCAACHGAD 42 (121)
T ss_pred HHHHHhhcchhhhccCCC
Confidence 334433333566666654
No 133
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=35.27 E-value=48 Score=30.72 Aligned_cols=95 Identities=23% Similarity=0.286 Sum_probs=53.3
Q ss_pred hhHHhhhhhhhhchhhhHH--HH--HHHH-----------HHHHHHHHHH---hcCCCcccCCCCcCcc---cccCCCCC
Q 034037 6 VGFLGATAAIIFGGFVTLN--VA--STIT-----------LGALRAASEA---KRKKFAMPCGVCKGKG---FYICKLCK 64 (105)
Q Consensus 6 ~~~~~~~~~~~~g~~v~lt--~~--s~~a-----------~~~~~~~~~~---~~~~~~~~C~~C~GsG---~~~C~~C~ 64 (105)
+-+|.++++...=.|.+-| ++ -+++ -.+++++.++ +..+..+.|..|.++= ...|+.|+
T Consensus 1059 iySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk~~p~d~~~~~vdc~~cg~~i~~~~~~c~ec~ 1138 (1189)
T KOG2041|consen 1059 IYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSKNPPVDPNSAKVDCSVCGAKIDPYDLQCSECQ 1138 (1189)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhccCCCCCCCccceeeeecCCcCCccCCCChhhc
Confidence 3456666666666666654 11 1111 1234444443 3345578899997755 36899998
Q ss_pred cccEEEEccCCCCccc-cceeCCCCccccc-------ccCccCCc
Q 034037 65 GNATIEWSPLYDPVFI-NPCLCPTCEGNRV-------QRCLNCLG 101 (105)
Q Consensus 65 G~G~i~~~~~~~g~~~-~~~~Cp~C~G~G~-------~~C~~C~G 101 (105)
++=.+-.. ...+... ...-||+|+-.-. ..||-|+.
T Consensus 1139 ~kfP~Cia-sG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs 1182 (1189)
T KOG2041|consen 1139 TKFPVCIA-SGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHS 1182 (1189)
T ss_pred CcCceeec-cCCccccceEEEccccccccccccccccccCccccC
Confidence 86433221 1112111 3457999988754 37998874
No 134
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.92 E-value=45 Score=18.76 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=16.2
Q ss_pred cCCCCCcccEEEEccCCCCccccceeCCCCcc
Q 034037 59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEG 90 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G 90 (105)
.|+.|+..=.+... ... .....||.|++
T Consensus 7 ~C~~Cg~~fe~~~~-~~~---~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQS-ISE---DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEE-cCC---CCCCcCCCCCC
Confidence 57777655544432 111 24668888887
No 135
>PF04829 PT-VENN: Pre-toxin domain with VENN motif; InterPro: IPR006914 This group of proteins, mainly from Neisseria meningitidis, may have haemagglutinin or haemolysin activity. A number of them have a second conserved domain, IPR006915 from INTERPRO, which is found in possible Pseudomonas aeruginosa haemagglutinins []. Filamentous haemagglutinin (FHA) is a major virulence attachment factor produced by certain bacterial species that functions as both a primary adhesin and an immunomodulator. Haemolysin is pore-forming toxin.
Probab=34.48 E-value=66 Score=19.53 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=21.3
Q ss_pred hhhhHHhhhhhhhhchhhhHHHHH-HHHHHHHHHHHHHhc
Q 034037 4 KQVGFLGATAAIIFGGFVTLNVAS-TITLGALRAASEAKR 42 (105)
Q Consensus 4 ~~~~~~~~~~~~~~g~~v~lt~~s-~~a~~~~~~~~~~~~ 42 (105)
..+..|..+++.+.|+++.-+..+ ..+..+.+.++|.|-
T Consensus 11 ~~v~~ls~l~ag~ag~~~g~~~~~a~~ga~~a~nAVeNN~ 50 (55)
T PF04829_consen 11 QKVSALSQLAAGVAGALAGGSSAGAATGANAAKNAVENNY 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcc
Confidence 345566666666666655554222 233556666666653
No 136
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=33.61 E-value=18 Score=27.95 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=8.4
Q ss_pred hcCCCcccCCCCcCc
Q 034037 41 KRKKFAMPCGVCKGK 55 (105)
Q Consensus 41 ~~~~~~~~C~~C~Gs 55 (105)
..+-....||+|+-.
T Consensus 212 ~QrLv~~lCp~C~~~ 226 (264)
T cd01129 212 AQRLVRKLCPHCKEK 226 (264)
T ss_pred EeEeecccChhhCCc
Confidence 344456677777433
No 137
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=33.24 E-value=20 Score=20.24 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.4
Q ss_pred ceeCCCCccccc
Q 034037 82 PCLCPTCEGNRV 93 (105)
Q Consensus 82 ~~~Cp~C~G~G~ 93 (105)
..+||.|.|+..
T Consensus 3 ~~pCP~CGG~Dr 14 (37)
T smart00778 3 HGPCPNCGGSDR 14 (37)
T ss_pred ccCCCCCCCccc
Confidence 468999999754
No 138
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=32.05 E-value=24 Score=18.84 Aligned_cols=17 Identities=35% Similarity=0.850 Sum_probs=7.6
Q ss_pred eCCCCcccccccCccCC
Q 034037 84 LCPTCEGNRVQRCLNCL 100 (105)
Q Consensus 84 ~Cp~C~G~G~~~C~~C~ 100 (105)
.|..|+-.++-+|++|.
T Consensus 4 ~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 4 LCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EETSSSSEESEE-TTT-
T ss_pred CCccCcCCCEEECCCcC
Confidence 45555554444555553
No 139
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.90 E-value=49 Score=22.13 Aligned_cols=11 Identities=36% Similarity=0.917 Sum_probs=7.0
Q ss_pred cceeCCCCccc
Q 034037 81 NPCLCPTCEGN 91 (105)
Q Consensus 81 ~~~~Cp~C~G~ 91 (105)
..-.||+|.|.
T Consensus 20 EiD~CPrCrGV 30 (88)
T COG3809 20 EIDYCPRCRGV 30 (88)
T ss_pred eeeeCCccccE
Confidence 34467777774
No 140
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=30.87 E-value=12 Score=23.79 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=4.1
Q ss_pred cceeCCCCcc
Q 034037 81 NPCLCPTCEG 90 (105)
Q Consensus 81 ~~~~Cp~C~G 90 (105)
....||.|+-
T Consensus 28 Viv~C~gC~~ 37 (66)
T PF05180_consen 28 VIVQCPGCKN 37 (66)
T ss_dssp EEEE-TTS--
T ss_pred EEEECCCCcc
Confidence 4456666654
No 141
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=30.71 E-value=38 Score=15.94 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.9
Q ss_pred CCCCccccc
Q 034037 85 CPTCEGNRV 93 (105)
Q Consensus 85 Cp~C~G~G~ 93 (105)
|..|+..|.
T Consensus 3 C~~C~~~GH 11 (18)
T PF00098_consen 3 CFNCGEPGH 11 (18)
T ss_dssp CTTTSCSSS
T ss_pred CcCCCCcCc
Confidence 444444443
No 142
>PF12669 P12: Virus attachment protein p12 family
Probab=30.59 E-value=1.3e+02 Score=18.27 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=8.1
Q ss_pred HHHHHHHhcCCCcccCCCCc
Q 034037 34 LRAASEAKRKKFAMPCGVCK 53 (105)
Q Consensus 34 ~~~~~~~~~~~~~~~C~~C~ 53 (105)
+|.++...|+. .-|..|.
T Consensus 17 ~r~~~k~~K~G--~~c~gCs 34 (58)
T PF12669_consen 17 IRKFIKDKKKG--GCCCGCS 34 (58)
T ss_pred HHHHHHHhhcC--CCCCCCC
Confidence 35555443332 3455553
No 143
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=30.55 E-value=50 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=5.9
Q ss_pred ccceeCCCCccc
Q 034037 80 INPCLCPTCEGN 91 (105)
Q Consensus 80 ~~~~~Cp~C~G~ 91 (105)
.....||+|+-.
T Consensus 28 ~~~a~CPdC~~~ 39 (70)
T PF07191_consen 28 KKEAFCPDCGQP 39 (70)
T ss_dssp EEEEE-TTT-SB
T ss_pred eecccCCCcccH
Confidence 345567777654
No 144
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=30.35 E-value=41 Score=20.66 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=5.4
Q ss_pred cceeCCCCccccc
Q 034037 81 NPCLCPTCEGNRV 93 (105)
Q Consensus 81 ~~~~Cp~C~G~G~ 93 (105)
...+||.|+-+|.
T Consensus 32 r~y~Cp~CgAtGd 44 (55)
T PF05741_consen 32 RKYVCPICGATGD 44 (55)
T ss_dssp GG---TTT---GG
T ss_pred hcCcCCCCcCcCc
Confidence 4568999998887
No 145
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=30.26 E-value=60 Score=23.65 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=18.9
Q ss_pred cCCCCCccc-EEEEccC-CCCc-cccceeCCCCccc
Q 034037 59 ICKLCKGNA-TIEWSPL-YDPV-FINPCLCPTCEGN 91 (105)
Q Consensus 59 ~C~~C~G~G-~i~~~~~-~~g~-~~~~~~Cp~C~G~ 91 (105)
.||.|...- .+.-+.. ..|. ......||.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 588888776 4443322 2221 2234779988875
No 146
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.13 E-value=29 Score=20.98 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=4.3
Q ss_pred ceeCCCCccc
Q 034037 82 PCLCPTCEGN 91 (105)
Q Consensus 82 ~~~Cp~C~G~ 91 (105)
.++||.|+..
T Consensus 28 Sq~C~~CG~~ 37 (69)
T PF07282_consen 28 SQTCPRCGHR 37 (69)
T ss_pred ccCccCcccc
Confidence 3444444443
No 147
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=30.12 E-value=46 Score=25.30 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=26.1
Q ss_pred cCCCcccCCCCcCcc--cccCC-----CCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037 42 RKKFAMPCGVCKGKG--FYICK-----LCKGNATIEWSPLYDPVFINPCLCPTCEGNRV 93 (105)
Q Consensus 42 ~~~~~~~C~~C~GsG--~~~C~-----~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~ 93 (105)
.+.....|..|...| ...|| .|.=.|-+... -.....|+.|+-.|.
T Consensus 56 ~~~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~------C~~~~~C~~Cg~~GH 108 (190)
T COG5082 56 IREENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNH------CPKPKKCYNCGETGH 108 (190)
T ss_pred ccccccccchhcccCcccccCChhHhhhcCCCCccccc------CCcccccccccccCc
Confidence 355677899999888 34455 77323322111 002256777777765
No 148
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=29.37 E-value=1.1e+02 Score=17.30 Aligned_cols=7 Identities=29% Similarity=0.966 Sum_probs=3.7
Q ss_pred CCCCCcc
Q 034037 60 CKLCKGN 66 (105)
Q Consensus 60 C~~C~G~ 66 (105)
||.|+..
T Consensus 21 CP~Cg~~ 27 (46)
T PF12760_consen 21 CPHCGST 27 (46)
T ss_pred CCCCCCe
Confidence 5555554
No 149
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=29.29 E-value=37 Score=23.08 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=6.9
Q ss_pred cceeCCCCccc
Q 034037 81 NPCLCPTCEGN 91 (105)
Q Consensus 81 ~~~~Cp~C~G~ 91 (105)
....|+.|+=.
T Consensus 41 ~h~~C~~CG~y 51 (99)
T PRK14892 41 AIITCGNCGLY 51 (99)
T ss_pred ceEECCCCCCc
Confidence 45677777643
No 150
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.93 E-value=60 Score=26.18 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=6.6
Q ss_pred cccCCCCcCc
Q 034037 46 AMPCGVCKGK 55 (105)
Q Consensus 46 ~~~C~~C~Gs 55 (105)
...||.|.+.
T Consensus 184 ~~~CPvCGs~ 193 (305)
T TIGR01562 184 RTLCPACGSP 193 (305)
T ss_pred CCcCCCCCCh
Confidence 3478888643
No 151
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=28.74 E-value=55 Score=25.48 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=14.3
Q ss_pred cccCCCCCcccEEEEccCCCCccccceeCCCCc
Q 034037 57 FYICKLCKGNATIEWSPLYDPVFINPCLCPTCE 89 (105)
Q Consensus 57 ~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~ 89 (105)
...|+.|+ ..|...... .....-||.|+
T Consensus 244 g~pCprCG--~~I~~~~~~---gR~t~~CP~CQ 271 (272)
T PRK14810 244 GEPCLNCK--TPIRRVVVA---GRSSHYCPHCQ 271 (272)
T ss_pred CCcCCCCC--CeeEEEEEC---CCccEECcCCc
Confidence 35677775 344332221 12455677775
No 152
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=28.70 E-value=77 Score=20.71 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=16.2
Q ss_pred ccCCCCCcccEEEEccCC---CCccccceeCCCCc
Q 034037 58 YICKLCKGNATIEWSPLY---DPVFINPCLCPTCE 89 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~---~g~~~~~~~Cp~C~ 89 (105)
..|+.|+....+.++.+. +..+.....|..|+
T Consensus 63 ~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~ 97 (104)
T TIGR01384 63 VECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCG 97 (104)
T ss_pred CCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCC
Confidence 467777655554443221 22244555666664
No 153
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=27.46 E-value=63 Score=18.55 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.1
Q ss_pred cCCCCCcccEEEEcc
Q 034037 59 ICKLCKGNATIEWSP 73 (105)
Q Consensus 59 ~C~~C~G~G~i~~~~ 73 (105)
.||.|+.+..|+...
T Consensus 1 ~CP~Cg~~a~ir~S~ 15 (47)
T PF04606_consen 1 RCPHCGSKARIRTSR 15 (47)
T ss_pred CcCCCCCeeEEEEch
Confidence 489999999887753
No 154
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.96 E-value=34 Score=21.58 Aligned_cols=7 Identities=29% Similarity=0.809 Sum_probs=3.8
Q ss_pred cccCCCC
Q 034037 46 AMPCGVC 52 (105)
Q Consensus 46 ~~~C~~C 52 (105)
...|.+|
T Consensus 9 ~~~CtSC 15 (61)
T COG2888 9 PPVCTSC 15 (61)
T ss_pred CceeccC
Confidence 4456555
No 155
>PF14029 DUF4244: Protein of unknown function (DUF4244)
Probab=26.91 E-value=99 Score=19.03 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=19.4
Q ss_pred HHhhhhhhhhchhhhHHHHHHHHHHHHHHHHH
Q 034037 8 FLGATAAIIFGGFVTLNVASTITLGALRAASE 39 (105)
Q Consensus 8 ~~~~~~~~~~g~~v~lt~~s~~a~~~~~~~~~ 39 (105)
++|..||+.+.+....-+-|...-+++..+++
T Consensus 21 AvgtlAA~afA~vL~~vvts~~v~~~L~~ii~ 52 (56)
T PF14029_consen 21 AVGTLAAAAFAGVLYKVVTSDEVRSALTGIIE 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 57778887777765443335555555555553
No 156
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.88 E-value=45 Score=31.54 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=18.6
Q ss_pred cccCCCCCcccEEEEccCCCCccccceeCCCCccccc--ccCccCC
Q 034037 57 FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV--QRCLNCL 100 (105)
Q Consensus 57 ~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~--~~C~~C~ 100 (105)
...|+.|+-.. ....||.|+..-. ..|++|.
T Consensus 626 ~RfCpsCG~~t-------------~~frCP~CG~~Te~i~fCP~CG 658 (1121)
T PRK04023 626 RRKCPSCGKET-------------FYRRCPFCGTHTEPVYRCPRCG 658 (1121)
T ss_pred CccCCCCCCcC-------------CcccCCCCCCCCCcceeCcccc
Confidence 35677776442 2347777777532 4777774
No 157
>PRK13697 cytochrome c6; Provisional
Probab=26.65 E-value=7.6 Score=25.50 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=6.9
Q ss_pred ccCCCCcCcc
Q 034037 47 MPCGVCKGKG 56 (105)
Q Consensus 47 ~~C~~C~GsG 56 (105)
..|..|||.|
T Consensus 37 ~~C~~CHg~g 46 (111)
T PRK13697 37 ANCASCHAGG 46 (111)
T ss_pred HHHHHhCCCC
Confidence 4577777765
No 158
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=26.48 E-value=86 Score=17.41 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=5.7
Q ss_pred ccCCCCCccc
Q 034037 58 YICKLCKGNA 67 (105)
Q Consensus 58 ~~C~~C~G~G 67 (105)
+.||.|+.+-
T Consensus 6 v~CP~C~s~~ 15 (36)
T PF03811_consen 6 VHCPRCQSTE 15 (36)
T ss_pred eeCCCCCCCC
Confidence 3466666655
No 159
>PHA02998 RNA polymerase subunit; Provisional
Probab=26.19 E-value=82 Score=24.05 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred ccCCCCCcccEEEEccCC---CCccccceeCCCCccc
Q 034037 58 YICKLCKGNATIEWSPLY---DPVFINPCLCPTCEGN 91 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~---~g~~~~~~~Cp~C~G~ 91 (105)
..|+.|+......++.+. +-.+.....|..|+-+
T Consensus 144 v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~ 180 (195)
T PHA02998 144 TPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKH 180 (195)
T ss_pred CCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCc
Confidence 468888877766554222 2235566789888754
No 160
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=25.62 E-value=42 Score=19.24 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=4.3
Q ss_pred ceeCCCCc
Q 034037 82 PCLCPTCE 89 (105)
Q Consensus 82 ~~~Cp~C~ 89 (105)
...|+.|+
T Consensus 34 ~~~Cv~C~ 41 (41)
T PF06677_consen 34 KIYCVSCG 41 (41)
T ss_pred CEECCCCC
Confidence 34566663
No 161
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=25.53 E-value=45 Score=22.73 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=14.4
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCcccc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNR 92 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G 92 (105)
..|+.|+-.-.+.. ....||.|++..
T Consensus 71 ~~C~~Cg~~~~~~~---------~~~~CP~Cgs~~ 96 (113)
T PRK12380 71 AWCWDCSQVVEIHQ---------HDAQCPHCHGER 96 (113)
T ss_pred EEcccCCCEEecCC---------cCccCcCCCCCC
Confidence 56888873222211 223588888764
No 162
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=24.66 E-value=36 Score=23.14 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=5.3
Q ss_pred eeCCCCcccc
Q 034037 83 CLCPTCEGNR 92 (105)
Q Consensus 83 ~~Cp~C~G~G 92 (105)
..||.|++..
T Consensus 87 ~~CP~Cgs~~ 96 (113)
T PF01155_consen 87 FSCPRCGSPD 96 (113)
T ss_dssp HH-SSSSSS-
T ss_pred CCCcCCcCCC
Confidence 4577777764
No 163
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=24.03 E-value=37 Score=21.13 Aligned_cols=15 Identities=13% Similarity=0.773 Sum_probs=6.4
Q ss_pred cccCCCCCcccEEEE
Q 034037 57 FYICKLCKGNATIEW 71 (105)
Q Consensus 57 ~~~C~~C~G~G~i~~ 71 (105)
.+.|..|+.+..+..
T Consensus 30 ~IlCNDC~~~s~v~f 44 (61)
T PF14599_consen 30 WILCNDCNAKSEVPF 44 (61)
T ss_dssp EEEESSS--EEEEE-
T ss_pred EEECCCCCCccceee
Confidence 345666666555443
No 164
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.82 E-value=55 Score=31.57 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=11.5
Q ss_pred eCCCCccccc--ccCccCCc
Q 034037 84 LCPTCEGNRV--QRCLNCLG 101 (105)
Q Consensus 84 ~Cp~C~G~G~--~~C~~C~G 101 (105)
.||.|+..-. ..|++|..
T Consensus 681 fCP~CGs~te~vy~CPsCGa 700 (1337)
T PRK14714 681 RCPDCGTHTEPVYVCPDCGA 700 (1337)
T ss_pred cCcccCCcCCCceeCccCCC
Confidence 6777776643 36777764
No 165
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=23.81 E-value=49 Score=20.11 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=5.7
Q ss_pred cceeCCCCcc
Q 034037 81 NPCLCPTCEG 90 (105)
Q Consensus 81 ~~~~Cp~C~G 90 (105)
...-||+|+-
T Consensus 23 leIKCpRC~t 32 (51)
T PF10122_consen 23 LEIKCPRCKT 32 (51)
T ss_pred EEEECCCCCc
Confidence 4456666654
No 166
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=23.80 E-value=34 Score=22.22 Aligned_cols=7 Identities=29% Similarity=0.757 Sum_probs=3.2
Q ss_pred ceeCCCC
Q 034037 82 PCLCPTC 88 (105)
Q Consensus 82 ~~~Cp~C 88 (105)
...|..|
T Consensus 46 ~~~C~~C 52 (81)
T PF05129_consen 46 ILSCRVC 52 (81)
T ss_dssp EEEESSS
T ss_pred EEEecCC
Confidence 3344444
No 167
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=23.65 E-value=49 Score=18.64 Aligned_cols=19 Identities=32% Similarity=0.842 Sum_probs=14.2
Q ss_pred ccCCCCcCcccccCCCCCc
Q 034037 47 MPCGVCKGKGFYICKLCKG 65 (105)
Q Consensus 47 ~~C~~C~GsG~~~C~~C~G 65 (105)
..|..|.|.+...|..|..
T Consensus 4 ~~C~~C~g~~~~~C~~C~~ 22 (49)
T cd00064 4 PSCATCTGPGPDQCTSCRH 22 (49)
T ss_pred CccCCCcCcCcCcCccCcC
Confidence 3677888887777888774
No 168
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=23.58 E-value=58 Score=24.80 Aligned_cols=29 Identities=24% Similarity=0.659 Sum_probs=17.5
Q ss_pred HhcCCCcccCCCCcCccc--ccCCCCCcccE
Q 034037 40 AKRKKFAMPCGVCKGKGF--YICKLCKGNAT 68 (105)
Q Consensus 40 ~~~~~~~~~C~~C~GsG~--~~C~~C~G~G~ 68 (105)
.+|.+.-..|..|.++-. .+||.|+..|.
T Consensus 156 Lsk~~hcilCtvCe~r~w~g~~CPKCGr~G~ 186 (200)
T PF12387_consen 156 LSKSKHCILCTVCEGREWKGGNCPKCGRHGK 186 (200)
T ss_pred ccCCCceEEEeeeecCccCCCCCCcccCCCC
Confidence 366666667777766542 35666666654
No 169
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.10 E-value=55 Score=20.24 Aligned_cols=33 Identities=18% Similarity=0.556 Sum_probs=16.8
Q ss_pred cccCCCCCcccEEEEc-cCCCCccccceeCCCCccc
Q 034037 57 FYICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGN 91 (105)
Q Consensus 57 ~~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~ 91 (105)
...||.|+++=+++.. +... -....-||.|+-+
T Consensus 4 Wi~CP~CgnKTR~kir~DT~L--kNfPlyCpKCK~E 37 (55)
T PF14205_consen 4 WILCPICGNKTRLKIREDTVL--KNFPLYCPKCKQE 37 (55)
T ss_pred EEECCCCCCccceeeecCcee--ccccccCCCCCce
Confidence 4567777776655442 1110 1134467777644
No 170
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=22.71 E-value=91 Score=21.90 Aligned_cols=9 Identities=33% Similarity=0.836 Sum_probs=6.2
Q ss_pred cceeCCCCc
Q 034037 81 NPCLCPTCE 89 (105)
Q Consensus 81 ~~~~Cp~C~ 89 (105)
....||.|+
T Consensus 123 ~f~~C~~C~ 131 (147)
T PF01927_consen 123 EFWRCPGCG 131 (147)
T ss_pred eEEECCCCC
Confidence 356788885
No 171
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.48 E-value=1e+02 Score=24.97 Aligned_cols=26 Identities=15% Similarity=-0.070 Sum_probs=16.8
Q ss_pred hhhhhhhhchhhhHHHHHHHHHHHHH
Q 034037 10 GATAAIIFGGFVTLNVASTITLGALR 35 (105)
Q Consensus 10 ~~~~~~~~g~~v~lt~~s~~a~~~~~ 35 (105)
+..+..+.||+++|.|+.+.|+=.++
T Consensus 15 ~~galgLvGGp~Gl~ml~AgA~Y~~y 40 (301)
T PF06120_consen 15 LSGALGLVGGPPGLVMLGAGAWYYFY 40 (301)
T ss_pred HHhHHHhhcchHHHHHHHHHHHHHHH
Confidence 34455588888888877665543333
No 172
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.44 E-value=41 Score=23.11 Aligned_cols=9 Identities=22% Similarity=0.973 Sum_probs=5.9
Q ss_pred eCCCCcccc
Q 034037 84 LCPTCEGNR 92 (105)
Q Consensus 84 ~Cp~C~G~G 92 (105)
.||.|++..
T Consensus 90 ~CP~Cgs~~ 98 (117)
T PRK00564 90 VCEKCHSKN 98 (117)
T ss_pred cCcCCCCCc
Confidence 477777653
No 173
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=56 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=16.2
Q ss_pred ccCCCCCcccEEEEccCCCC--ccccceeCCCCccc
Q 034037 58 YICKLCKGNATIEWSPLYDP--VFINPCLCPTCEGN 91 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g--~~~~~~~Cp~C~G~ 91 (105)
+.|.+|+-++.+.....-.+ ..+..++|++|++.
T Consensus 226 ~KC~nC~~t~~l~y~sl~s~E~A~vkAEtC~~C~sY 261 (308)
T COG3058 226 VKCSNCEQSKKLHYWSLESSELAAVKAETCGDCNSY 261 (308)
T ss_pred HHhccccccCCccceeccchhhhHhhhhcCCcHHHH
Confidence 45666666655543211111 12244566666654
No 174
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=22.02 E-value=85 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=12.6
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCE 89 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~ 89 (105)
..|+.|+.. |...... + ....-||.|+
T Consensus 246 ~pC~~Cg~~--I~~~~~~-g--R~t~~CP~CQ 272 (274)
T PRK01103 246 EPCRRCGTP--IEKIKQG-G--RSTFFCPRCQ 272 (274)
T ss_pred CCCCCCCCe--eEEEEEC-C--CCcEECcCCC
Confidence 457776533 3332111 1 2445666665
No 175
>PHA00626 hypothetical protein
Probab=21.96 E-value=45 Score=20.84 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=11.0
Q ss_pred eCCCCcc-cccccCccCC
Q 034037 84 LCPTCEG-NRVQRCLNCL 100 (105)
Q Consensus 84 ~Cp~C~G-~G~~~C~~C~ 100 (105)
.|..|.+ +..-.|++|.
T Consensus 13 rcg~cr~~snrYkCkdCG 30 (59)
T PHA00626 13 KEKTMRGWSDDYVCCDCG 30 (59)
T ss_pred eeceecccCcceEcCCCC
Confidence 5666666 4455788875
No 176
>PRK02935 hypothetical protein; Provisional
Probab=21.79 E-value=55 Score=22.89 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=4.9
Q ss_pred CCCcccCCCC
Q 034037 43 KKFAMPCGVC 52 (105)
Q Consensus 43 ~~~~~~C~~C 52 (105)
+..++.||.|
T Consensus 67 kavqV~CP~C 76 (110)
T PRK02935 67 KAVQVICPSC 76 (110)
T ss_pred cceeeECCCC
Confidence 4345555555
No 177
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=21.11 E-value=1.2e+02 Score=18.73 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 034037 20 FVTLNVASTITLGALRAASEA 40 (105)
Q Consensus 20 ~v~lt~~s~~a~~~~~~~~~~ 40 (105)
++.|.++|++-.+..|.++|+
T Consensus 9 ~l~~~iiStIl~PfSk~aIE~ 29 (55)
T PF03526_consen 9 MLYLAIISTILFPFSKWAIEK 29 (55)
T ss_pred hhHHHHHHHhhhhhHHHHHHH
Confidence 456678899999999988887
No 178
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=20.67 E-value=66 Score=21.94 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=7.9
Q ss_pred ceeCCCCcccc
Q 034037 82 PCLCPTCEGNR 92 (105)
Q Consensus 82 ~~~Cp~C~G~G 92 (105)
...||.|++..
T Consensus 86 ~~~CP~Cgs~~ 96 (115)
T TIGR00100 86 LYRCPKCHGIM 96 (115)
T ss_pred CccCcCCcCCC
Confidence 34688888765
No 179
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.64 E-value=93 Score=24.31 Aligned_cols=27 Identities=30% Similarity=0.618 Sum_probs=12.9
Q ss_pred ccCCCCCcccEEEEccCCCCccccceeCCCCc
Q 034037 58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCE 89 (105)
Q Consensus 58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~ 89 (105)
..|+.|+. .|...... + ....-||.|+
T Consensus 255 ~pC~~Cg~--~I~~~~~~-g--R~t~~CP~CQ 281 (282)
T PRK13945 255 KPCRKCGT--PIERIKLA-G--RSTHWCPNCQ 281 (282)
T ss_pred CCCCcCCC--eeEEEEEC-C--CccEECCCCc
Confidence 46777753 23332111 1 2455677765
No 180
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=20.63 E-value=1.4e+02 Score=19.21 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=11.7
Q ss_pred CchhhhhHHhhhhhhh
Q 034037 1 MILKQVGFLGATAAII 16 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (105)
|+++.+..++.+.+++
T Consensus 1 ~~~~~~~~igagla~l 16 (74)
T PRK07558 1 MDAEALKFIGAGLACI 16 (74)
T ss_pred CcHhHHHHHHHHHHHH
Confidence 6778888888776653
No 181
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.59 E-value=49 Score=17.38 Aligned_cols=7 Identities=43% Similarity=1.279 Sum_probs=3.2
Q ss_pred eeCCCCc
Q 034037 83 CLCPTCE 89 (105)
Q Consensus 83 ~~Cp~C~ 89 (105)
..||.|+
T Consensus 22 r~C~~Cg 28 (32)
T PF09297_consen 22 RRCPSCG 28 (32)
T ss_dssp EEESSSS
T ss_pred eECCCCc
Confidence 3455443
No 182
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=20.31 E-value=59 Score=17.48 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=4.2
Q ss_pred eeCCCCcc
Q 034037 83 CLCPTCEG 90 (105)
Q Consensus 83 ~~Cp~C~G 90 (105)
..||.|.+
T Consensus 26 ~~Cp~C~s 33 (37)
T PF12172_consen 26 PVCPHCGS 33 (37)
T ss_dssp SEETTTT-
T ss_pred cCCCCcCc
Confidence 46666654
Done!