BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034039
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 5/86 (5%)
Query: 5 NGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT 64
NG+V + + RL+S TKLFIGGLS+ T++ L+DAF G++++ KVI DR T
Sbjct: 18 NGNVPVTSMLGSLRLMS-----TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72
Query: 65 GQSRGYGFVKFASEAAAGEAIKEMDG 90
G+SRG+GFV F E AA AI EMDG
Sbjct: 73 GRSRGFGFVNFNDEGAATAAISEMDG 98
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
+KLF+GGLS+ T+++ LK AF GE+ E VI DR TG+SRG+GFV F+ E +A AIK
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 87 EMDG 90
EMDG
Sbjct: 95 EMDG 98
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 50/66 (75%)
Query: 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEA 84
S +KLFIGG++Y +E L++AF ++GE+++ +VI DR TG+SRG+GFV F S AA A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 85 IKEMDG 90
I+ +DG
Sbjct: 98 IQALDG 103
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
TKL+IGGLS T+E LKDAF + E +V+ ++VTG+SRGYGFV F SE +A AI
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 87 EMDG 90
M+G
Sbjct: 91 AMNG 94
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ + F+GGL + T++ L++AF ++G++I+ K+I DR TG+SRG+GFV FAS+ A
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 83 EAIKEMDG 90
+AI+ M+G
Sbjct: 62 QAIEAMNG 69
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV +I DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A ++M+G
Sbjct: 61 DAKDAARDMNG 71
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ A+ + F+GGL++ TN L+ AF G++I+ KVI DR TG+SRG+GFV F+SE
Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60
Query: 80 AAGEAIKEMDG 90
+ +AI+ M+G
Sbjct: 61 SMLDAIENMNG 71
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 52/71 (73%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ A+ + F+GGL++ T+ L++AF +GEI++ KVI DR TG+SRG+GFV F+SE
Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60
Query: 80 AAGEAIKEMDG 90
+ +AI+ M+G
Sbjct: 61 SMLDAIENMNG 71
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A ++M+G
Sbjct: 61 DAKDAARDMNG 71
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A ++M+G
Sbjct: 61 DAKDAARDMNG 71
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A ++M+G
Sbjct: 61 DAKDAARDMNG 71
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEA 84
S +K+F+GG+SY T+E L++AF ++GE+++ K+I DR TG+SRG+ FV F S A A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 85 IKEMDG 90
+ ++DG
Sbjct: 92 M-QLDG 96
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A ++M+G
Sbjct: 61 DAKDAARDMNG 71
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+E+ ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A ++M+G
Sbjct: 61 DAKDAARDMNG 71
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A ++M+G
Sbjct: 61 DAKDAARDMNG 71
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ + + F+GGL++ T++ L+ AF Q+G++I+ K+I DR TG+SRG+GFV F E
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 80 AAGEAIKEMDG 90
A +AI+ M+G
Sbjct: 61 AMKDAIEGMNG 71
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 50/71 (70%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ + + F+GGL++ T++ L+ AF Q+GE+++ K+I DR TG+SRG+GFV F E
Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 80 AAGEAIKEMDG 90
+ +AI+ M+G
Sbjct: 61 SMKDAIEGMNG 71
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
+ F+GGL++ TN+ L+ F Q G++I+ K+I DR +G+SRG+GFV F E A +AI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 88 MDG 90
M+G
Sbjct: 67 MNG 69
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+E+ ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A + ++M+G
Sbjct: 61 DAKDVARDMNG 71
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+E+ ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A + ++M+G
Sbjct: 61 DAKDVARDMNG 71
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDG 90
A A K+M+G
Sbjct: 60 DAKNAAKDMNG 70
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E
OS=Homo sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDG 90
A A K+M+G
Sbjct: 60 DAKNAAKDMNG 70
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C
OS=Homo sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDG 90
A A K+M+G
Sbjct: 60 DAKNAAKDMNG 70
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1
OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDG 90
A A K+M+G
Sbjct: 60 DAKNAAKDMNG 70
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D
OS=Homo sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDG 90
A A K+M+G
Sbjct: 60 DAKNAAKDMNG 70
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B
OS=Homo sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDG 90
A A K+M+G
Sbjct: 60 DAKNAAKDMNG 70
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 49/71 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ + + F+GGL++ T+E L+ AF Q GE+++ K+I DR TG+SRG+GFV F E
Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 80 AAGEAIKEMDG 90
+ +AI+ M+G
Sbjct: 61 SMKDAIEGMNG 71
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLFIGGL++DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A +A+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 88 MDG 90
M+G
Sbjct: 66 MNG 68
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83
+ TK+F+GGL Y T + L+ F GEI E VI DR TG+SRGYGFV A AAA
Sbjct: 8 TTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 84 AIKEMDGLV 92
A K+ + ++
Sbjct: 68 ACKDPNPII 76
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
TK+F+GGL Y T ++ L+ F GEI E VI DR TG+SRGYGFV A +AA A K
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACK 70
Query: 87 EMDGLV 92
+ + ++
Sbjct: 71 DPNPII 76
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 22 DANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAA 80
D ++ +F+G L+ D + +L++ F + + KV+ DR+TG+S+GYGFVKFA E+
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 81 AGEAIKEMDGLVCRT 95
A+ EM+G++C T
Sbjct: 231 QLRAMTEMNGVLCST 245
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81
+ N L+IG L Y +E L F GE++ KVI ++ TGQS GYGF++F S AAA
Sbjct: 79 NPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAA 138
Query: 82 GEAIKEMDG 90
++ +G
Sbjct: 139 ETILQTYNG 147
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAA 80
SD N+ T +F+GGL E L+ F +GE++ VK++ + GFV+F + A+
Sbjct: 277 SDPNN-TTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRC------GFVQFGTRAS 329
Query: 81 AGEAIKEMDG 90
A +A+ ++G
Sbjct: 330 AEQALSSLNG 339
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDG 90
+A+ M+G
Sbjct: 62 DAMMAMNG 69
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDG 90
+A+ M+G
Sbjct: 62 DAMMAMNG 69
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDG 90
+A+ M+G
Sbjct: 62 DAMMAMNG 69
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
+ F+GGL++ T + L+ F Q GE+I+ K+I DR TG+SRG+GFV F E + +AI E
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 88 MDG 90
M+G
Sbjct: 67 MNG 69
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
TK+F+GGL Y T ++ L+ F G+I E VI DR TG+SRGYGFV A AAA A K
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 87 EMDGLV 92
+ + ++
Sbjct: 71 DPNPII 76
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
TK+F+GGL Y T + L+ F G+I E VI DR TG+SRGYGFV A AAA A K
Sbjct: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 93
Query: 87 EMDGLV 92
+ + ++
Sbjct: 94 DPNPII 99
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
TK+F+GGL Y T ++ L+ F G+I E VI DR TG+SRGYGFV A AAA A K
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 87 EMDGLV 92
+ + ++
Sbjct: 71 DPNPII 76
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDG 90
+A+ M+G
Sbjct: 62 DAMMAMNG 69
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDG 90
+A+ M+G
Sbjct: 62 DAMMAMNG 69
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
+ F+GGL++ TN+ L+ AF Q G+I + K+I DR TG+SRG+GFV F E + +AI+
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 88 MDG 90
M+G
Sbjct: 67 MNG 69
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83
+ TK+F+GGL Y T ++ L+ F G+I E VI DR TG+SRGYGFV A AAA
Sbjct: 8 TTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 84 AIKEMDGLV 92
A K+ + ++
Sbjct: 68 ACKDPNPII 76
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83
+ TK+F+GGL Y T ++ L+ F G+I E VI DR TG+SRGYGFV A AAA
Sbjct: 8 TTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 84 AIKEMDGLV 92
A K+ + ++
Sbjct: 68 ACKDPNPII 76
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
TK+F+GGL Y T ++ L+ F G+I E VI DR TG+SRGYGFV A AAA A K
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 87 EMDGLV 92
+ + ++
Sbjct: 71 DPNPII 76
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ F ++G ++EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A +A +E++G
Sbjct: 61 DAKDAARELNG 71
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +T+E L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A A ++M+G
Sbjct: 61 DAKAAARDMNG 71
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLF+GGL+++T+E L+D F G I EV V+ DR T +SRG+GF+ F + A +A++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 88 MDG 90
M+G
Sbjct: 67 MNG 69
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX
PE=2 SV=1
Length = 396
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +T+E L+ FG++G I EV ++ DR T +SRG+ F+ F S A
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPA 60
Query: 80 AAGEAIKEMDG 90
A A+++M+G
Sbjct: 61 DAKAAVRDMNG 71
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83
+ TK+F+GGL Y T + L+ F G+I E VI DR TG+SRGYGFV A AAA
Sbjct: 8 TTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 84 AIKEMDGLV 92
A K+ + ++
Sbjct: 68 ACKDPNPII 76
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +T+E L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDG 90
A A ++M+G
Sbjct: 61 NAKAAARDMNG 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,851,681
Number of Sequences: 539616
Number of extensions: 1274437
Number of successful extensions: 4518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 2978
Number of HSP's gapped (non-prelim): 1442
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)