Query 034039
Match_columns 105
No_of_seqs 112 out of 1235
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 5.4E-21 1.2E-25 114.0 12.1 82 23-104 31-112 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.8E-19 3.9E-24 120.5 11.5 79 26-104 269-347 (352)
3 PF00076 RRM_1: RNA recognitio 99.8 3.1E-19 6.8E-24 94.0 8.9 70 29-99 1-70 (70)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.2E-19 1.1E-23 118.3 10.5 79 25-103 2-80 (352)
5 TIGR01659 sex-lethal sex-letha 99.8 7.6E-19 1.6E-23 117.4 10.7 82 22-103 103-184 (346)
6 TIGR01659 sex-lethal sex-letha 99.8 1.2E-18 2.7E-23 116.5 10.1 102 3-104 168-273 (346)
7 KOG0122 Translation initiation 99.8 3.3E-18 7.1E-23 107.3 10.1 83 22-104 185-267 (270)
8 TIGR01645 half-pint poly-U bin 99.8 3.3E-18 7.1E-23 120.4 10.8 79 25-103 203-281 (612)
9 KOG0107 Alternative splicing f 99.8 2.6E-18 5.7E-23 103.1 8.0 77 24-105 8-84 (195)
10 TIGR01648 hnRNP-R-Q heterogene 99.8 1.1E-17 2.3E-22 117.5 11.4 100 1-102 34-134 (578)
11 KOG0121 Nuclear cap-binding pr 99.8 3.4E-18 7.4E-23 98.1 6.9 82 24-105 34-115 (153)
12 KOG0149 Predicted RNA-binding 99.8 5.6E-18 1.2E-22 105.7 7.7 78 25-103 11-88 (247)
13 KOG4207 Predicted splicing fac 99.7 5.8E-18 1.3E-22 104.2 7.1 83 22-104 9-91 (256)
14 PF14259 RRM_6: RNA recognitio 99.7 2.8E-17 6E-22 86.8 8.8 70 29-99 1-70 (70)
15 KOG0125 Ataxin 2-binding prote 99.7 1.4E-17 3.1E-22 108.2 9.0 79 24-104 94-172 (376)
16 TIGR01645 half-pint poly-U bin 99.7 3.5E-17 7.5E-22 115.3 10.5 79 24-102 105-183 (612)
17 KOG0126 Predicted RNA-binding 99.7 2.3E-19 5E-24 108.3 -1.2 100 2-101 11-110 (219)
18 KOG0113 U1 small nuclear ribon 99.7 1.2E-16 2.6E-21 102.8 9.6 82 24-105 99-180 (335)
19 PLN03120 nucleic acid binding 99.7 1.3E-16 2.8E-21 102.0 9.7 75 26-104 4-78 (260)
20 TIGR01628 PABP-1234 polyadenyl 99.7 1.7E-16 3.7E-21 112.0 10.5 76 28-103 2-77 (562)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.7 3.4E-16 7.4E-21 109.2 11.3 79 25-103 294-372 (509)
22 smart00362 RRM_2 RNA recogniti 99.7 7.8E-16 1.7E-20 80.5 9.5 72 28-101 1-72 (72)
23 TIGR01622 SF-CC1 splicing fact 99.7 4.5E-16 9.8E-21 107.4 10.5 78 26-103 186-263 (457)
24 KOG0117 Heterogeneous nuclear 99.7 3.1E-16 6.6E-21 105.5 9.1 101 2-103 60-161 (506)
25 PLN03213 repressor of silencin 99.7 4.7E-16 1E-20 106.2 9.4 77 24-104 8-86 (759)
26 KOG0131 Splicing factor 3b, su 99.7 8.8E-17 1.9E-21 97.2 5.2 82 22-103 5-86 (203)
27 KOG0111 Cyclophilin-type pepti 99.7 3.2E-17 7E-22 101.9 3.3 82 23-104 7-88 (298)
28 smart00360 RRM RNA recognition 99.7 2E-15 4.3E-20 78.7 8.7 71 31-101 1-71 (71)
29 TIGR01628 PABP-1234 polyadenyl 99.7 1.3E-15 2.7E-20 107.6 10.4 79 25-104 284-362 (562)
30 TIGR01622 SF-CC1 splicing fact 99.7 2.1E-15 4.5E-20 104.1 10.9 79 24-103 87-165 (457)
31 PLN03121 nucleic acid binding 99.6 2.6E-15 5.6E-20 94.9 9.7 74 25-102 4-77 (243)
32 KOG0148 Apoptosis-promoting RN 99.6 8.6E-16 1.9E-20 97.9 7.4 79 24-102 60-138 (321)
33 KOG0130 RNA-binding protein RB 99.6 6.8E-16 1.5E-20 89.5 6.0 81 21-101 67-147 (170)
34 KOG0145 RNA-binding protein EL 99.6 2.4E-16 5.3E-21 100.2 4.4 103 1-103 100-206 (360)
35 COG0724 RNA-binding proteins ( 99.6 4.7E-15 1E-19 94.9 10.0 78 26-103 115-192 (306)
36 cd00590 RRM RRM (RNA recogniti 99.6 1.8E-14 3.9E-19 75.6 9.8 73 28-101 1-73 (74)
37 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.9E-14 4E-19 100.2 10.4 76 24-104 273-349 (481)
38 KOG0108 mRNA cleavage and poly 99.6 6.7E-15 1.5E-19 100.5 7.8 78 27-104 19-96 (435)
39 KOG0114 Predicted RNA-binding 99.6 2.2E-14 4.8E-19 79.7 8.2 75 25-102 17-91 (124)
40 KOG0124 Polypyrimidine tract-b 99.6 8.5E-15 1.9E-19 97.0 6.9 102 1-102 172-286 (544)
41 KOG0105 Alternative splicing f 99.6 7.1E-15 1.5E-19 89.4 6.0 79 24-105 4-82 (241)
42 KOG0148 Apoptosis-promoting RN 99.6 2.7E-14 5.9E-19 91.1 8.5 73 23-101 161-233 (321)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 5.3E-14 1.2E-18 98.0 9.7 73 26-104 2-76 (481)
44 TIGR01648 hnRNP-R-Q heterogene 99.5 6.2E-14 1.4E-18 98.8 9.6 72 25-104 232-305 (578)
45 KOG0145 RNA-binding protein EL 99.5 4.4E-14 9.6E-19 90.0 8.0 81 24-104 39-119 (360)
46 smart00361 RRM_1 RNA recogniti 99.5 1.5E-13 3.3E-18 72.6 8.0 61 40-100 2-69 (70)
47 KOG0124 Polypyrimidine tract-b 99.5 1.3E-14 2.8E-19 96.2 4.2 77 26-102 113-189 (544)
48 KOG0147 Transcriptional coacti 99.5 2.3E-14 4.9E-19 98.4 5.5 75 28-102 280-354 (549)
49 KOG0117 Heterogeneous nuclear 99.5 1E-13 2.2E-18 93.5 8.1 72 25-104 258-329 (506)
50 KOG0146 RNA-binding protein ET 99.5 3.7E-14 7.9E-19 90.7 5.5 84 21-104 280-363 (371)
51 KOG0415 Predicted peptidyl pro 99.5 9.8E-14 2.1E-18 91.6 6.8 82 23-104 236-317 (479)
52 KOG0131 Splicing factor 3b, su 99.5 2.6E-14 5.5E-19 86.6 3.8 99 5-103 72-174 (203)
53 KOG0127 Nucleolar protein fibr 99.5 1.1E-13 2.3E-18 95.5 6.9 79 26-104 5-83 (678)
54 KOG0109 RNA-binding protein LA 99.5 7.2E-14 1.6E-18 90.0 5.5 70 27-104 3-72 (346)
55 KOG0109 RNA-binding protein LA 99.5 6.4E-14 1.4E-18 90.3 5.0 95 2-104 54-148 (346)
56 KOG0144 RNA-binding protein CU 99.5 3.1E-13 6.8E-18 90.9 7.7 74 24-97 32-106 (510)
57 KOG4212 RNA-binding protein hn 99.5 3.3E-13 7.2E-18 91.2 7.7 77 25-102 43-120 (608)
58 KOG0127 Nucleolar protein fibr 99.5 9.3E-13 2E-17 90.9 9.5 81 24-104 290-376 (678)
59 KOG0144 RNA-binding protein CU 99.4 1.1E-13 2.3E-18 93.2 4.5 67 25-92 123-189 (510)
60 PF13893 RRM_5: RNA recognitio 99.4 7.5E-13 1.6E-17 67.0 6.5 56 43-103 1-56 (56)
61 KOG0123 Polyadenylate-binding 99.4 7.3E-13 1.6E-17 89.5 8.1 94 3-102 56-149 (369)
62 KOG4208 Nucleolar RNA-binding 99.4 1.4E-12 3.1E-17 80.4 7.3 81 22-102 45-126 (214)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.4 8.9E-12 1.9E-16 87.2 9.8 72 23-101 172-255 (509)
64 KOG0123 Polyadenylate-binding 99.3 2.1E-11 4.6E-16 82.5 7.5 72 27-104 2-73 (369)
65 KOG0533 RRM motif-containing p 99.3 3.9E-11 8.5E-16 76.6 7.5 79 23-102 80-158 (243)
66 KOG4661 Hsp27-ERE-TATA-binding 99.2 4E-11 8.6E-16 83.7 7.3 81 24-104 403-483 (940)
67 KOG4212 RNA-binding protein hn 99.2 4.6E-11 9.9E-16 81.1 7.3 77 22-103 532-608 (608)
68 KOG0153 Predicted RNA-binding 99.2 6.7E-11 1.4E-15 77.9 7.5 75 21-101 223-298 (377)
69 KOG0110 RNA-binding protein (R 99.2 6.5E-11 1.4E-15 83.8 7.7 77 27-104 516-596 (725)
70 KOG4206 Spliceosomal protein s 99.2 1.8E-10 4E-15 72.0 7.8 77 25-104 8-88 (221)
71 KOG0110 RNA-binding protein (R 99.2 3E-11 6.5E-16 85.4 4.7 79 26-104 613-691 (725)
72 KOG0146 RNA-binding protein ET 99.2 7.5E-11 1.6E-15 75.7 5.8 68 24-92 17-84 (371)
73 KOG0132 RNA polymerase II C-te 99.2 1.2E-10 2.6E-15 83.3 6.9 72 25-102 420-491 (894)
74 KOG1548 Transcription elongati 99.2 2.6E-10 5.6E-15 75.2 7.9 79 24-103 132-218 (382)
75 KOG1457 RNA binding protein (c 99.1 6.8E-10 1.5E-14 69.7 8.4 82 23-104 31-116 (284)
76 KOG4205 RNA-binding protein mu 99.1 9.5E-11 2.1E-15 77.4 4.7 75 25-100 5-79 (311)
77 KOG4660 Protein Mei2, essentia 99.1 1.7E-10 3.6E-15 79.9 4.6 77 18-99 67-143 (549)
78 KOG4209 Splicing factor RNPS1, 99.1 3.1E-10 6.8E-15 72.4 5.0 81 22-103 97-177 (231)
79 KOG0226 RNA-binding proteins [ 99.0 4.8E-10 1E-14 71.4 4.5 81 23-103 187-267 (290)
80 KOG4205 RNA-binding protein mu 99.0 1.2E-09 2.6E-14 72.2 6.5 75 26-101 97-171 (311)
81 KOG0116 RasGAP SH3 binding pro 99.0 2.3E-09 5E-14 73.3 7.5 77 25-102 287-363 (419)
82 PF04059 RRM_2: RNA recognitio 99.0 9.4E-09 2E-13 57.3 8.4 68 27-94 2-71 (97)
83 KOG0106 Alternative splicing f 99.0 6.8E-10 1.5E-14 69.8 3.8 69 28-104 3-71 (216)
84 KOG4454 RNA binding protein (R 98.9 6.8E-10 1.5E-14 69.5 2.5 78 24-103 7-84 (267)
85 KOG1190 Polypyrimidine tract-b 98.8 2.6E-08 5.7E-13 67.3 8.1 74 26-104 297-371 (492)
86 KOG4211 Splicing factor hnRNP- 98.8 2.4E-08 5.1E-13 68.7 7.8 78 22-103 6-83 (510)
87 KOG0120 Splicing factor U2AF, 98.7 2.7E-08 5.9E-13 69.2 4.4 81 23-103 286-366 (500)
88 KOG0151 Predicted splicing reg 98.7 1E-07 2.2E-12 68.3 6.9 76 25-100 173-251 (877)
89 KOG1995 Conserved Zn-finger pr 98.6 9.8E-08 2.1E-12 63.5 5.3 82 23-104 63-152 (351)
90 KOG0105 Alternative splicing f 98.6 6.8E-07 1.5E-11 55.0 8.3 67 22-95 111-177 (241)
91 KOG1457 RNA binding protein (c 98.6 1.2E-07 2.6E-12 59.8 4.4 65 26-94 210-274 (284)
92 KOG4211 Splicing factor hnRNP- 98.5 5.1E-07 1.1E-11 62.3 6.8 76 25-102 102-178 (510)
93 PF11608 Limkain-b1: Limkain b 98.5 1.7E-06 3.7E-11 46.7 7.1 67 27-103 3-74 (90)
94 KOG0147 Transcriptional coacti 98.5 6.8E-08 1.5E-12 67.2 2.0 81 22-103 175-255 (549)
95 KOG4849 mRNA cleavage factor I 98.4 3.4E-07 7.3E-12 61.2 4.2 79 23-101 77-157 (498)
96 PF08777 RRM_3: RNA binding mo 98.4 1.2E-06 2.6E-11 49.7 5.6 59 27-91 2-60 (105)
97 KOG3152 TBP-binding protein, a 98.4 1.9E-07 4.1E-12 59.8 2.3 75 25-99 73-159 (278)
98 KOG2314 Translation initiation 98.4 2.9E-06 6.2E-11 59.8 7.6 80 20-100 52-138 (698)
99 KOG1365 RNA-binding protein Fu 98.3 2.3E-06 4.9E-11 57.9 5.9 81 22-103 276-359 (508)
100 KOG4206 Spliceosomal protein s 98.2 1.5E-05 3.2E-10 50.3 7.8 77 23-104 143-220 (221)
101 KOG4307 RNA binding protein RB 98.2 7.1E-06 1.5E-10 59.2 6.8 75 27-102 868-943 (944)
102 COG5175 MOT2 Transcriptional r 98.2 8E-06 1.7E-10 54.6 6.1 77 26-102 114-199 (480)
103 KOG0106 Alternative splicing f 98.0 4.9E-06 1.1E-10 52.6 2.9 72 23-102 96-167 (216)
104 PF14605 Nup35_RRM_2: Nup53/35 98.0 3.5E-05 7.6E-10 38.4 5.0 52 27-85 2-53 (53)
105 KOG4210 Nuclear localization s 98.0 6.4E-06 1.4E-10 54.4 2.8 76 25-101 183-259 (285)
106 KOG0129 Predicted RNA-binding 98.0 5E-05 1.1E-09 53.0 7.0 65 22-86 366-431 (520)
107 KOG1456 Heterogeneous nuclear 97.9 0.00012 2.6E-09 49.7 8.5 76 24-104 285-361 (494)
108 KOG1548 Transcription elongati 97.9 8E-05 1.7E-09 49.8 7.0 76 24-103 263-349 (382)
109 KOG0129 Predicted RNA-binding 97.8 0.00015 3.3E-09 50.7 6.8 64 23-87 256-325 (520)
110 KOG1365 RNA-binding protein Fu 97.7 0.00055 1.2E-08 46.7 8.6 61 26-87 161-225 (508)
111 KOG0112 Large RNA-binding prot 97.7 9.8E-05 2.1E-09 54.7 5.0 71 22-98 451-521 (975)
112 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00036 7.8E-09 39.2 6.0 72 25-98 5-83 (100)
113 KOG1190 Polypyrimidine tract-b 97.6 0.00031 6.8E-09 48.2 6.4 76 24-104 412-489 (492)
114 PF08952 DUF1866: Domain of un 97.5 0.00045 9.7E-09 41.2 5.8 53 42-103 52-104 (146)
115 KOG1855 Predicted RNA-binding 97.5 0.00017 3.6E-09 49.6 4.2 69 24-92 229-310 (484)
116 PF10309 DUF2414: Protein of u 97.5 0.0021 4.5E-08 33.0 7.0 55 26-88 5-62 (62)
117 PF08675 RNA_bind: RNA binding 97.5 0.00075 1.6E-08 36.6 5.5 58 24-90 7-64 (87)
118 KOG0120 Splicing factor U2AF, 97.4 0.00065 1.4E-08 48.0 6.5 59 43-101 426-487 (500)
119 KOG0115 RNA-binding protein p5 97.4 0.00027 5.9E-09 45.6 3.7 63 27-90 32-94 (275)
120 KOG2193 IGF-II mRNA-binding pr 97.3 0.00034 7.4E-09 48.3 3.7 70 27-102 2-72 (584)
121 KOG2202 U2 snRNP splicing fact 97.1 0.00021 4.6E-09 46.0 1.3 61 42-103 84-145 (260)
122 KOG0128 RNA-binding protein SA 97.0 0.0003 6.4E-09 51.9 1.2 75 26-101 736-810 (881)
123 KOG4676 Splicing factor, argin 97.0 0.0021 4.5E-08 44.1 5.0 76 26-102 7-85 (479)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 96.9 0.0018 3.8E-08 40.1 4.0 74 24-97 5-84 (176)
125 KOG2416 Acinus (induces apopto 96.8 0.0012 2.6E-08 47.3 3.0 76 22-103 440-519 (718)
126 KOG4307 RNA binding protein RB 96.8 0.00083 1.8E-08 49.0 1.9 76 25-101 433-509 (944)
127 PF07576 BRAP2: BRCA1-associat 96.7 0.041 8.8E-07 31.5 8.4 67 27-95 13-81 (110)
128 KOG1996 mRNA splicing factor [ 96.6 0.015 3.3E-07 38.7 6.6 60 41-100 301-361 (378)
129 KOG1456 Heterogeneous nuclear 96.5 0.023 4.9E-07 39.1 7.1 64 27-95 121-186 (494)
130 KOG2068 MOT2 transcription fac 96.5 0.0013 2.7E-08 44.0 1.1 77 26-102 77-159 (327)
131 KOG2591 c-Mpl binding protein, 96.2 0.011 2.3E-07 42.4 4.7 71 25-102 174-248 (684)
132 KOG0128 RNA-binding protein SA 96.2 0.00018 3.8E-09 53.0 -4.2 63 27-89 668-730 (881)
133 KOG4660 Protein Mei2, essentia 95.8 0.02 4.4E-07 40.8 4.4 44 50-93 413-456 (549)
134 KOG0804 Cytoplasmic Zn-finger 95.7 0.086 1.9E-06 37.0 7.2 68 24-94 72-141 (493)
135 PF04847 Calcipressin: Calcipr 95.6 0.045 9.7E-07 34.2 5.2 59 39-103 8-68 (184)
136 PF03880 DbpA: DbpA RNA bindin 95.4 0.089 1.9E-06 27.8 5.1 67 28-103 2-74 (74)
137 PF15023 DUF4523: Protein of u 95.3 0.12 2.7E-06 31.0 5.9 63 22-91 82-148 (166)
138 KOG0112 Large RNA-binding prot 95.0 0.0047 1E-07 46.2 -0.8 75 25-100 371-445 (975)
139 KOG2135 Proteins containing th 94.3 0.021 4.6E-07 40.1 1.2 67 28-101 374-441 (526)
140 KOG2253 U1 snRNP complex, subu 93.8 0.051 1.1E-06 39.7 2.3 70 23-101 37-106 (668)
141 KOG4483 Uncharacterized conser 92.6 1.2 2.6E-05 31.3 7.2 68 22-97 387-455 (528)
142 KOG4574 RNA-binding protein (c 92.0 0.1 2.2E-06 39.4 1.8 68 31-104 303-372 (1007)
143 KOG4285 Mitotic phosphoprotein 91.9 1.5 3.3E-05 29.6 6.9 63 27-97 198-260 (350)
144 PF11767 SET_assoc: Histone ly 91.7 1.1 2.3E-05 23.3 7.1 54 37-99 11-64 (66)
145 KOG4210 Nuclear localization s 90.5 0.2 4.4E-06 33.4 2.0 73 25-97 87-159 (285)
146 KOG2193 IGF-II mRNA-binding pr 89.8 0.007 1.5E-07 42.1 -5.4 73 25-101 79-152 (584)
147 PF10567 Nab6_mRNP_bdg: RNA-re 84.0 5.5 0.00012 26.9 5.6 62 23-84 12-80 (309)
148 KOG4410 5-formyltetrahydrofola 83.7 9.9 0.00022 25.7 6.7 48 25-78 329-377 (396)
149 KOG2318 Uncharacterized conser 83.5 15 0.00033 27.2 8.0 77 23-99 171-299 (650)
150 PF15513 DUF4651: Domain of un 75.8 9 0.00019 19.6 3.8 19 41-59 9-27 (62)
151 KOG4676 Splicing factor, argin 74.8 0.53 1.1E-05 32.8 -1.2 62 26-92 151-212 (479)
152 PF07292 NID: Nmi/IFP 35 domai 70.2 15 0.00033 20.1 4.0 24 23-46 49-72 (88)
153 PRK11901 hypothetical protein; 68.1 22 0.00048 24.4 5.2 62 25-91 244-307 (327)
154 KOG1295 Nonsense-mediated deca 60.8 20 0.00043 25.1 4.0 67 27-93 8-77 (376)
155 COG0724 RNA-binding proteins ( 56.8 22 0.00049 22.2 3.7 62 24-85 223-284 (306)
156 KOG2295 C2H2 Zn-finger protein 52.9 1.6 3.5E-05 31.9 -2.2 70 26-95 231-300 (648)
157 PF02714 DUF221: Domain of unk 50.6 23 0.0005 23.8 3.1 22 71-92 1-22 (325)
158 KOG4019 Calcineurin-mediated s 48.8 9 0.0002 24.1 0.8 68 27-100 11-84 (193)
159 KOG4365 Uncharacterized conser 48.1 2.3 4.9E-05 30.3 -2.0 49 28-76 5-53 (572)
160 PF11823 DUF3343: Protein of u 47.9 31 0.00067 17.8 2.7 27 70-96 3-29 (73)
161 smart00596 PRE_C2HC PRE_C2HC d 43.6 36 0.00078 17.8 2.5 37 41-77 2-39 (69)
162 PF03439 Spt5-NGN: Early trans 42.9 54 0.0012 17.5 3.8 29 67-95 43-71 (84)
163 PRK10905 cell division protein 42.4 1.1E+02 0.0025 21.1 6.9 64 24-91 245-309 (328)
164 KOG4008 rRNA processing protei 39.5 36 0.00078 22.5 2.5 33 24-56 38-70 (261)
165 COG5507 Uncharacterized conser 38.8 43 0.00094 18.9 2.4 21 68-88 66-86 (117)
166 PRK14548 50S ribosomal protein 38.7 68 0.0015 17.4 5.6 57 29-88 23-81 (84)
167 PF03468 XS: XS domain; Inter 38.6 80 0.0017 18.2 5.3 45 38-85 29-74 (116)
168 PF05573 NosL: NosL; InterPro 37.9 90 0.002 18.7 4.0 28 67-94 113-140 (149)
169 PF14893 PNMA: PNMA 36.6 34 0.00073 23.7 2.2 34 24-57 16-50 (331)
170 PHA01632 hypothetical protein 36.3 51 0.0011 16.5 2.2 21 29-49 19-39 (64)
171 PF09707 Cas_Cas2CT1978: CRISP 35.9 78 0.0017 17.3 4.0 46 27-75 26-71 (86)
172 KOG2891 Surface glycoprotein [ 35.8 61 0.0013 22.0 3.2 34 26-59 149-194 (445)
173 PF11411 DNA_ligase_IV: DNA li 31.7 47 0.001 15.0 1.6 16 36-51 19-34 (36)
174 TIGR02542 B_forsyth_147 Bacter 29.6 62 0.0013 18.9 2.2 45 35-79 83-130 (145)
175 PF15407 Spo7_2_N: Sporulation 29.0 20 0.00044 18.6 0.1 24 19-42 20-43 (67)
176 PF12829 Mhr1: Transcriptional 28.9 92 0.002 17.3 2.7 53 33-89 19-72 (91)
177 cd00027 BRCT Breast Cancer Sup 28.7 76 0.0016 15.0 3.2 26 28-53 3-28 (72)
178 PF15063 TC1: Thyroid cancer p 27.7 47 0.001 17.8 1.4 26 28-53 27-52 (79)
179 COG0030 KsgA Dimethyladenosine 27.5 1.2E+02 0.0025 20.3 3.4 33 26-58 95-127 (259)
180 PF10905 DUF2695: Protein of u 27.4 90 0.002 15.4 2.5 23 38-60 30-52 (53)
181 KOG2187 tRNA uracil-5-methyltr 27.0 37 0.0008 25.0 1.2 35 69-103 64-98 (534)
182 PF07530 PRE_C2HC: Associated 27.0 1E+02 0.0022 15.9 2.9 53 41-93 2-57 (68)
183 COG5193 LHP1 La protein, small 26.6 33 0.00071 24.4 0.8 60 26-85 174-243 (438)
184 KOG0156 Cytochrome P450 CYP2 s 25.3 2.1E+02 0.0045 21.0 4.7 58 31-98 37-97 (489)
185 PF09702 Cas_Csa5: CRISPR-asso 25.3 1.3E+02 0.0028 17.1 2.9 23 23-48 61-83 (105)
186 COG5594 Uncharacterized integr 23.6 95 0.0021 24.3 2.8 25 68-92 357-381 (827)
187 PF09341 Pcc1: Transcription f 22.9 1.3E+02 0.0027 15.6 3.0 20 70-89 4-23 (76)
188 COG5638 Uncharacterized conser 22.0 1.4E+02 0.003 21.7 3.1 37 23-59 143-184 (622)
189 COG0150 PurM Phosphoribosylami 21.8 25 0.00054 24.4 -0.4 48 40-91 275-322 (345)
190 PHA01627 DNA binding protein 21.2 1.6E+02 0.0035 16.9 2.8 34 72-105 40-73 (107)
191 COG4314 NosL Predicted lipopro 21.2 2.2E+02 0.0047 17.7 3.7 21 74-94 132-152 (176)
192 PRK08559 nusG transcription an 20.6 1.4E+02 0.003 18.0 2.7 25 67-91 45-69 (153)
193 TIGR01873 cas_CT1978 CRISPR-as 20.0 1.3E+02 0.0028 16.5 2.2 47 27-76 26-73 (87)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=5.4e-21 Score=113.99 Aligned_cols=82 Identities=46% Similarity=0.719 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.++.+..++++++||||+|.+.++|+.|++.|++..+.|+.++|..
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45677999999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 111 a~ 112 (144)
T PLN03134 111 AN 112 (144)
T ss_pred CC
Confidence 64
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=1.8e-19 Score=120.54 Aligned_cols=79 Identities=35% Similarity=0.470 Sum_probs=75.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
...|||+|||+.+++++|+++|++||.|.+++++.+..++.++|||||+|.+.++|..|+..|||..++|+.|+|...+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 4479999999999999999999999999999999999899999999999999999999999999999999999998754
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.81 E-value=3.1e-19 Score=93.96 Aligned_cols=70 Identities=39% Similarity=0.658 Sum_probs=66.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 29 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
|||+|||+++++++|+++|.+||.+..+.+..+ .++..+++|||+|.+.++|+.|++.|+|..+.|+.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 4888999999999999999999999999999999875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=5.2e-19 Score=118.34 Aligned_cols=79 Identities=30% Similarity=0.495 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+.++|||+|||..+++++|+++|..||+|..++++.+..+|+++|||||+|.+.++|+.|++.|+|..+.|+.++|..+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3678999999999999999999999999999999999889999999999999999999999999999999999998764
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=7.6e-19 Score=117.45 Aligned_cols=82 Identities=33% Similarity=0.460 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||++||+++++++|+++|..||+|..++++.+..++++++||||+|.+.++|+.|++.|++..+.++.++|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999987
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 183 ~a 184 (346)
T TIGR01659 183 YA 184 (346)
T ss_pred cc
Confidence 65
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=1.2e-18 Score=116.45 Aligned_cols=102 Identities=25% Similarity=0.414 Sum_probs=83.7
Q ss_pred cCCCceecccccccccc--ccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHH
Q 034039 3 WLNGSVRFSHSVRFTRL--LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAA 80 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~ 80 (105)
.+++..+..+.+..... ..+....++|||+|||+.+++++|+++|.+||.|..+.++.+..+++++++|||+|.+.++
T Consensus 168 ~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 168 NLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred HcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 45666666655543322 2233356789999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHcCCceeee--eeeeeccCC
Q 034039 81 AGEAIKEMDGLVCRT--SKDTDMLST 104 (105)
Q Consensus 81 a~~a~~~l~g~~~~~--~~~~v~~~~ 104 (105)
|++|++.||+..+.+ +.++|.++.
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECC
Confidence 999999999998876 567777653
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.3e-18 Score=107.33 Aligned_cols=83 Identities=28% Similarity=0.386 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...+..+|-|.||+.++++.+|+++|.+||.+.++.+..++.||.++|||||.|.++++|.+||..|||+-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 265 wsk 267 (270)
T KOG0122|consen 265 WSK 267 (270)
T ss_pred ecC
Confidence 765
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=3.3e-18 Score=120.44 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||+.+++++|+++|+.||.|..+++..+..+++++|||||+|.+.++|..|+..||+..++|+.|+|..+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4478999999999999999999999999999999999888899999999999999999999999999999999999754
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.6e-18 Score=103.12 Aligned_cols=77 Identities=31% Similarity=0.469 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...+.|||+||+..+++.+|...|..||++..+.+..+ +.|||||+|++..+|+.|+..|+|..|.|.+++|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34679999999999999999999999999999988765 4589999999999999999999999999999999998
Q ss_pred CC
Q 034039 104 TG 105 (105)
Q Consensus 104 ~~ 105 (105)
+|
T Consensus 83 ~G 84 (195)
T KOG0107|consen 83 TG 84 (195)
T ss_pred cC
Confidence 75
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.76 E-value=1.1e-17 Score=117.48 Aligned_cols=100 Identities=25% Similarity=0.379 Sum_probs=84.9
Q ss_pred CCcCCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHH
Q 034039 1 MQWLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAA 80 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~ 80 (105)
|.++|+.+.+..+++.|... .....++|||+|||+++++++|.++|.+||.|..++++.+ .+|.++|||||+|.+.++
T Consensus 34 ~~~~~g~r~~g~Pp~~~~~~-~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~ 111 (578)
T TIGR01648 34 LVQENGQRKYGGPPPGWSGV-QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEE 111 (578)
T ss_pred ccccCCcccCCCCCCcccCC-CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHH
Confidence 34677778888777765432 3445789999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHcCCceee-eeeeeecc
Q 034039 81 AGEAIKEMDGLVCR-TSKDTDML 102 (105)
Q Consensus 81 a~~a~~~l~g~~~~-~~~~~v~~ 102 (105)
|+.|++.||+..+. ++.+.|..
T Consensus 112 A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 112 AKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred HHHHHHHcCCCeecCCccccccc
Confidence 99999999999885 66665543
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=3.4e-18 Score=98.08 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..+++|||+||+..+++++|.++|+.+|+|.++.+-.++.+-.+-|||||+|.+.++|+.|++.++|..++.+.|++..+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46789999999999999999999999999999999999877778899999999999999999999999999999999876
Q ss_pred CC
Q 034039 104 TG 105 (105)
Q Consensus 104 ~~ 105 (105)
.|
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
No 12
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=5.6e-18 Score=105.74 Aligned_cols=78 Identities=41% Similarity=0.672 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.-++|||+||+|.+..++|++.|++||+|....++.|+.+|+++|||||+|.+.++|.+|++. ..-.|+||+..+.|+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 457899999999999999999999999999999999999999999999999999999999944 556778888776654
No 13
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.75 E-value=5.8e-18 Score=104.19 Aligned_cols=83 Identities=31% Similarity=0.472 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+-+.-..|.|-||...++.++|..+|++||.|-++.|+.+..|..++|||||.|.+..+|+.|++.|+|..|+|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 876
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.75 E-value=2.8e-17 Score=86.82 Aligned_cols=70 Identities=33% Similarity=0.544 Sum_probs=64.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 29 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
|||+|||+++++++|.++|..+|.|..+.+..++. +..+++|||+|.+.++|..|++.+++..++|+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999875 88999999999999999999999999999999874
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=108.17 Aligned_cols=79 Identities=24% Similarity=0.470 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+..++|+|+|+|+...+.||+..|.+||.|.+++|+.+. . .++|||||+|++..+|++|-++|||..+.||+|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-R-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-R-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-C-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 355799999999999999999999999999999999885 3 38999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 172 T 172 (376)
T KOG0125|consen 172 T 172 (376)
T ss_pred c
Confidence 4
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=3.5e-17 Score=115.32 Aligned_cols=79 Identities=23% Similarity=0.454 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+.+++++|+++|..||.|.++.+..++.+|+++|||||+|.+.++|+.|++.|||..+.|+.++|..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3457899999999999999999999999999999999998999999999999999999999999999999999998864
No 17
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=2.3e-19 Score=108.35 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=87.8
Q ss_pred CcCCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHH
Q 034039 2 QWLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a 81 (105)
+.+|..+++..-........+-..+.-|||+|||...|+.+|.-+|++||.+..+.+++|..||+++||||+-|++..+.
T Consensus 11 ~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRST 90 (219)
T KOG0126|consen 11 QKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRST 90 (219)
T ss_pred HHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccce
Confidence 34555555555554455555667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeeeeeeec
Q 034039 82 GEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 82 ~~a~~~l~g~~~~~~~~~v~ 101 (105)
..|+..|||..|.|+.|+|.
T Consensus 91 ILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 91 ILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred EEEEeccCCceecceeEEee
Confidence 99999999999999999986
No 18
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.2e-16 Score=102.83 Aligned_cols=82 Identities=30% Similarity=0.580 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
++-.+|||+-|+..+++..|+..|+.||+|+.+.++.+..||+++|||||+|++..+...|.+.-+|..|+|+.+.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 034039 104 TG 105 (105)
Q Consensus 104 ~~ 105 (105)
.|
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=101.97 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=68.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+.+++++|+++|+.||.|.++.++.+.. .+|||||+|.+.++|+.|+ .|+|..+.|+.++|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999988753 4689999999999999999 599999999999998653
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=1.7e-16 Score=112.01 Aligned_cols=76 Identities=34% Similarity=0.472 Sum_probs=73.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+|||+|||+++++++|+++|..||.|..+++.++..+++++|||||+|.+.++|++|+..+++..+.|+.++++.+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 6999999999999999999999999999999999988999999999999999999999999999999999999765
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.70 E-value=3.4e-16 Score=109.18 Aligned_cols=79 Identities=24% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..+.|+.|.|..+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999999889999999999999999999999999999999999998765
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.69 E-value=7.8e-16 Score=80.51 Aligned_cols=72 Identities=36% Similarity=0.542 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+|||+|||+.++.++|+++|..||++..+.+..+. +.++++|||+|.+.+.|+.|+..+++..+.|+.++|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888765 6788999999999999999999999999999988763
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=4.5e-16 Score=107.39 Aligned_cols=78 Identities=29% Similarity=0.524 Sum_probs=74.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..+|||+|||..+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|..|+..|+|..+.|+.++|.++
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 578999999999999999999999999999999999888899999999999999999999999999999999999874
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.1e-16 Score=105.46 Aligned_cols=101 Identities=27% Similarity=0.373 Sum_probs=86.8
Q ss_pred CcCCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHH
Q 034039 2 QWLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a 81 (105)
+.-+|.+....+++.|.... ....+.|||+.||.++.+++|..+|++.|+|..+++..++-+|.++|||||+|.+++.|
T Consensus 60 ~ve~gqrk~ggPpP~weg~~-p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~A 138 (506)
T KOG0117|consen 60 VVENGQRKYGGPPPGWEGPP-PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEA 138 (506)
T ss_pred EEeccccccCCCCCcccCCC-CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHH
Confidence 34566677777766654443 36788999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHcCCceee-eeeeeeccC
Q 034039 82 GEAIKEMDGLVCR-TSKDTDMLS 103 (105)
Q Consensus 82 ~~a~~~l~g~~~~-~~~~~v~~~ 103 (105)
+.|++.||++.|. |+.|.|-++
T Consensus 139 q~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 139 QEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred HHHHHHhhCccccCCCEeEEEEe
Confidence 9999999999884 777777554
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.67 E-value=4.7e-16 Score=106.21 Aligned_cols=77 Identities=17% Similarity=0.344 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCH--HHHHHHHHHcCCceeeeeeeeec
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASE--AAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
....+||||||++.+++++|...|..||.|.++.+++ .+| +|||||+|... .++.+|+..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4567999999999999999999999999999999984 466 89999999976 78999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 84 KAK 86 (759)
T PLN03213 84 KAK 86 (759)
T ss_pred ecc
Confidence 765
No 26
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.67 E-value=8.8e-17 Score=97.16 Aligned_cols=82 Identities=28% Similarity=0.432 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+.+...+|||+||+..++++.|+++|.+.|+|.+++++.++.+..++||||++|.++++|+.|++.||...|-|+.|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 85 ka 86 (203)
T KOG0131|consen 85 KA 86 (203)
T ss_pred ec
Confidence 54
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.2e-17 Score=101.93 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||++|...+++.-|..-|-+||+|..++++.|..+++++||+||+|...++|.+|+..||+..|-|+.|+|-+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 87 Ak 88 (298)
T KOG0111|consen 87 AK 88 (298)
T ss_pred cC
Confidence 74
No 28
>smart00360 RRM RNA recognition motif.
Probab=99.66 E-value=2e-15 Score=78.67 Aligned_cols=71 Identities=31% Similarity=0.538 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 31 IGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 31 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
|+|||..+++++|+++|..||.+..+.+..+..++.++++|||+|.+.++|..|+..+++..+.++.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998887778899999999999999999999999999999888763
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=1.3e-15 Score=107.63 Aligned_cols=79 Identities=30% Similarity=0.500 Sum_probs=74.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
...+|||+||++.+++++|+++|..||.|..+++..+. +|.++|||||.|.+.++|.+|+..|||..+.|+.+.|.++.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 45689999999999999999999999999999999984 89999999999999999999999999999999999998764
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.65 E-value=2.1e-15 Score=104.15 Aligned_cols=79 Identities=22% Similarity=0.307 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||..+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|..|+ .|+|..+.|+.+.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeec
Confidence 34679999999999999999999999999999999999889999999999999999999999 59999999999988754
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.65 E-value=2.6e-15 Score=94.89 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...+|||+||++.+++++|+++|+.||.|.+++++.+. ...++|||+|.+..+++.|+ .|+|..|.++.+++..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEe
Confidence 45789999999999999999999999999999999874 34479999999999999999 8999999999988764
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.6e-16 Score=97.90 Aligned_cols=79 Identities=35% Similarity=0.583 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
.....+||+.|.+.++.++|++-|.+||+|.++++++|..|++++||+||.|.++++|+.||..|||.-|.+|.|+.--
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999988643
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=6.8e-16 Score=89.50 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=76.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
+.+.....|||.++.+..+++++.+.|..||+|+.+.+..++.+|..+||++|+|++...|++|+..+||..|-+..+.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 034039 101 M 101 (105)
Q Consensus 101 ~ 101 (105)
.
T Consensus 147 D 147 (170)
T KOG0130|consen 147 D 147 (170)
T ss_pred E
Confidence 6
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=2.4e-16 Score=100.19 Aligned_cols=103 Identities=30% Similarity=0.496 Sum_probs=88.9
Q ss_pred CCcCCCceecccccc--ccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCH
Q 034039 1 MQWLNGSVRFSHSVR--FTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASE 78 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~ 78 (105)
|..+||.+++.+++. +.++..+......|||++||..++..+|+.+|++||.|-..++..|..+|.++|.+||.|..+
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 356899999999865 566666777888999999999999999999999999998888888888999999999999999
Q ss_pred HHHHHHHHHcCCceeee--eeeeeccC
Q 034039 79 AAAGEAIKEMDGLVCRT--SKDTDMLS 103 (105)
Q Consensus 79 ~~a~~a~~~l~g~~~~~--~~~~v~~~ 103 (105)
.+|+.||..|||..-.| ..|.|.++
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 99999999999987654 34555543
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.63 E-value=4.7e-15 Score=94.86 Aligned_cols=78 Identities=36% Similarity=0.616 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..+|||+|||..+++++|.++|..||.+..+.+..++.++.++|+|||.|.+.+++..|+..++|..+.|+.+.|..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 589999999999999999999999999999999999889999999999999999999999999999999999999874
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.62 E-value=1.8e-14 Score=75.61 Aligned_cols=73 Identities=27% Similarity=0.523 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+|+|+|||+.+++++++++|+.+|.+..+.+..+. .+.+++++||+|.+.++|..|++.+++..+.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 48999999999999999999999999999998876 33678999999999999999999999999999998875
No 37
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.59 E-value=1.9e-14 Score=100.24 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....+|||+|||+ .+++++|+++|+.||.|.++++..+. +|+|||+|.+.++|..|++.|||..+.|+.++|..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999998 69999999999999999999988763 48999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 348 s~ 349 (481)
T TIGR01649 348 SK 349 (481)
T ss_pred cc
Confidence 64
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.59 E-value=6.7e-15 Score=100.45 Aligned_cols=78 Identities=27% Similarity=0.584 Sum_probs=75.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..+||+|+|+++++++|..+|...|.|..++++.|+.+|+++||||++|.+.+++..|++.|||..+.|+.++|..+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998754
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.2e-14 Score=79.73 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....|||.|||..+|.++..++|.+||.|..+++-... ..+|.|||.|++..+|..|+++|+|..+.++.+.|.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 45689999999999999999999999999999986544 3568999999999999999999999999999998864
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=8.5e-15 Score=97.01 Aligned_cols=102 Identities=20% Similarity=0.328 Sum_probs=89.8
Q ss_pred CCcCCCceecccccccccccc-------------CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCc
Q 034039 1 MQWLNGSVRFSHSVRFTRLLS-------------DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQS 67 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~ 67 (105)
++++||..+.++++....+.. +...-++|||..+.++.++.+|+..|+.||+|..|.+.+....+.+
T Consensus 172 lEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 172 LEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred HHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 468888888888877655553 2234479999999999999999999999999999999999988889
Q ss_pred cceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 68 RGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 68 ~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
+||+|++|.+..+...|+..||-+.+.|..++|--
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 99999999999999999999999999999999853
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=7.1e-15 Score=89.43 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||.++.+.+++++|-+||.|..+.+...+ ...+||||+|++..+|+.|+.--+|+.++|.+|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346789999999999999999999999999999875432 24579999999999999999999999999999999987
Q ss_pred CC
Q 034039 104 TG 105 (105)
Q Consensus 104 ~~ 105 (105)
.+
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 54
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.7e-14 Score=91.13 Aligned_cols=73 Identities=27% Similarity=0.493 Sum_probs=67.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+.+.++||++|++...+++.+++.|..||+|..+++-.++ ||+||.|.+++.|..||..+|+.++.|...+..
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3467899999999999999999999999999999988765 899999999999999999999999999887753
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.55 E-value=5.3e-14 Score=97.97 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=66.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHc--CCceeeeeeeeeccC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLVCRTSKDTDMLS 103 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~g~~~~~~~~~v~~~ 103 (105)
+++|||+|||+.+++++|+++|+.||.|..+.++.+ +++|||+|.+.++|+.|++.+ ++..+.|+.+.|..+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999988753 379999999999999999864 788999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 76 ~ 76 (481)
T TIGR01649 76 T 76 (481)
T ss_pred C
Confidence 3
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=6.2e-14 Score=98.78 Aligned_cols=72 Identities=28% Similarity=0.453 Sum_probs=66.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..++|||+||++++++++|+++|..| |.|.++.++ ++||||+|++.++|++|++.|||..+.|+.|+|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999998764 35899999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 304 Ak 305 (578)
T TIGR01648 304 AK 305 (578)
T ss_pred cc
Confidence 64
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=4.4e-14 Score=90.02 Aligned_cols=81 Identities=32% Similarity=0.531 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...+.|.|.=||..+|+++++.+|...|+|+.|++++|+.+|.+.||+||.|-++.+|++|+..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34567888889999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 119 R 119 (360)
T KOG0145|consen 119 R 119 (360)
T ss_pred c
Confidence 4
No 46
>smart00361 RRM_1 RNA recognition motif.
Probab=99.52 E-value=1.5e-13 Score=72.59 Aligned_cols=61 Identities=20% Similarity=0.371 Sum_probs=54.5
Q ss_pred HHHHHHHHh----ccCCeEEEE-EEecCCC--CCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 40 ETVLKDAFG----QHGEIIEVK-VICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 40 ~~~l~~~f~----~~g~v~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
+++|+++|+ .||.+.++. +..+..+ +.++|++||.|.+.++|..|+..|||..+.|+.+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888898 999999985 6666656 889999999999999999999999999999999876
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.3e-14 Score=96.17 Aligned_cols=77 Identities=23% Similarity=0.475 Sum_probs=74.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
-+++||+.+.+...++.|+.-|..||+|+.+.+.+|+.|++++||+||+|+-.+.|+.|++.|||..+.|+.++|-.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999864
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.51 E-value=2.3e-14 Score=98.43 Aligned_cols=75 Identities=27% Similarity=0.576 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
.+||+||.+++++++|+.+|++||.|..+.+..+..+|.++||+||+|.+.+.|..|+..|||..|.|+.++|-.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 399999999999999999999999999999999988999999999999999999999999999999999999754
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1e-13 Score=93.47 Aligned_cols=72 Identities=31% Similarity=0.376 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
....|||.||+.++|++.|++.|..||.|.+++-++ .||||.|.++++|-+|++.+||+.|+|..|.|.|++
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 347899999999999999999999999999997664 489999999999999999999999999999999876
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.7e-14 Score=90.69 Aligned_cols=84 Identities=31% Similarity=0.447 Sum_probs=78.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+..+.+.|||=-||.+..+.+|...|..||.|...++-.|+.|..++||+||.|.+..++++||..|||+.|..++++|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45678899999999999999999999999999999998889889999999999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+.+
T Consensus 360 QLKR 363 (371)
T KOG0146|consen 360 QLKR 363 (371)
T ss_pred hhcC
Confidence 9864
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=9.8e-14 Score=91.60 Aligned_cols=82 Identities=27% Similarity=0.398 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
.++.+.|||-.|.+-++.++|.-+|+.||.|..|.++++..+|.+..||||+|++.++++.|.-+|++..|+.++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 53
No 52
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.49 E-value=2.6e-14 Score=86.58 Aligned_cols=99 Identities=27% Similarity=0.459 Sum_probs=82.5
Q ss_pred CCceeccccccccccc---cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEecCCCCCccceEEEEeCCHHH
Q 034039 5 NGSVRFSHSVRFTRLL---SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAA 80 (105)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~ 80 (105)
|...++.++++..... ........+||+||.+.+++..|.+.|+.||++.. .++.++..+|.+++++|+.|++.+.
T Consensus 72 n~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfea 151 (203)
T KOG0131|consen 72 NMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEA 151 (203)
T ss_pred HHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHH
Confidence 4445566666554444 23345578999999999999999999999998855 4778888889999999999999999
Q ss_pred HHHHHHHcCCceeeeeeeeeccC
Q 034039 81 AGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 81 a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+.+|+.+++|..+.++++.|.++
T Consensus 152 sd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 152 SDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred HHHHHHHhccchhcCCceEEEEE
Confidence 99999999999999999999865
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=95.47 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..+|||++||++++.++|.++|+.+|+|..|.++.+..++.++||+||.|...++++.|+....+..+.|+.++|..++
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 3789999999999999999999999999999999999888999999999999999999999999999999999998764
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=7.2e-14 Score=90.01 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=65.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..+||+|||..+++.+|+.+|++||.|..|.|+++ ||||..++...++.|++.|+|..|+|..|.|+-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 36899999999999999999999999999999875 79999999999999999999999999999998765
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=6.4e-14 Score=90.25 Aligned_cols=95 Identities=27% Similarity=0.392 Sum_probs=83.2
Q ss_pred CcCCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHH
Q 034039 2 QWLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a 81 (105)
..+++..+.+-.+........+..+++++|+|+.+.++.++|+..|.+||++..|.++.+ |+||.|.-.++|
T Consensus 54 rNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda 125 (346)
T KOG0109|consen 54 RNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDA 125 (346)
T ss_pred hhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccch
Confidence 456777777777665555555667889999999999999999999999999999998754 799999999999
Q ss_pred HHHHHHcCCceeeeeeeeeccCC
Q 034039 82 GEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 82 ~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..|++.|++.++.|++++|++++
T Consensus 126 ~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 126 VEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred HHHHhcccccccccceeeeeeec
Confidence 99999999999999999999876
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.1e-13 Score=90.95 Aligned_cols=74 Identities=32% Similarity=0.536 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc-eeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL-VCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~-~~~~~~ 97 (105)
.+.-++||+.+|..++|.+|+.+|++||.|..|.+++|+.++.++|||||.|.+.++|.+|+..|++. .+.|..
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999875 455544
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=3.3e-13 Score=91.19 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..+.+||.|+|.++.+++|+++++ +-|.|.+|++..|. +|+++|++.|+|++++.+++|++.||.+.+.|+.+.|.=
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 445699999999999999999996 68999999999997 999999999999999999999999999999999999864
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=9.3e-13 Score=90.94 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHc-----CC-ceeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-----DG-LVCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-----~g-~~~~~~~ 97 (105)
....+|||.|||+++++++|...|++||.|....++.++.|+.+.|.|||.|.+...|..||..- .| ..|+|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34589999999999999999999999999999999999999999999999999999999999765 34 6789999
Q ss_pred eeeccCC
Q 034039 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
+.|+++.
T Consensus 370 Lkv~~Av 376 (678)
T KOG0127|consen 370 LKVTLAV 376 (678)
T ss_pred Eeeeecc
Confidence 9999764
No 59
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.1e-13 Score=93.18 Aligned_cols=67 Identities=36% Similarity=0.594 Sum_probs=63.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
..++|||+.|+..+++.+++++|.+||.|++|.+.++. .+.++||+||.|..++.|..|++.|||..
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccce
Confidence 36789999999999999999999999999999999997 89999999999999999999999999975
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=7.5e-13 Score=66.97 Aligned_cols=56 Identities=29% Similarity=0.485 Sum_probs=49.1
Q ss_pred HHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 43 LKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 43 l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
|.++|++||.|..+.+..+. ++++||+|.+.++|+.|++.|||..+.|+.++|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886543 579999999999999999999999999999999764
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=7.3e-13 Score=89.45 Aligned_cols=94 Identities=32% Similarity=0.476 Sum_probs=78.9
Q ss_pred cCCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHH
Q 034039 3 WLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 82 (105)
.+|...+..+.++..+...+.. .+||.||+++++..+|.++|..||.|..|++..+. +| ++|| ||.|++.++|+
T Consensus 56 ~~n~~~~~~~~~rim~s~rd~~---~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~ 129 (369)
T KOG0123|consen 56 TMNFDVLKGKPIRIMWSQRDPS---LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAK 129 (369)
T ss_pred HcCCcccCCcEEEeehhccCCc---eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHH
Confidence 4555566666666555444332 29999999999999999999999999999999987 56 8999 99999999999
Q ss_pred HHHHHcCCceeeeeeeeecc
Q 034039 83 EAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 83 ~a~~~l~g~~~~~~~~~v~~ 102 (105)
.|+..+||..+.++.+-|-+
T Consensus 130 ~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 130 KAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred HHHHHhcCcccCCCeeEEee
Confidence 99999999999999887754
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=80.35 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH-GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
+......+|+..+|..+.+.++..+|.++ |.+.+.++.++..||.++|||||+|++.+.|+-|.+.||++.+.++.+.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999887 78888899899999999999999999999999999999999999988876
Q ss_pred cc
Q 034039 101 ML 102 (105)
Q Consensus 101 ~~ 102 (105)
.+
T Consensus 125 ~v 126 (214)
T KOG4208|consen 125 HV 126 (214)
T ss_pred EE
Confidence 54
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=8.9e-12 Score=87.17 Aligned_cols=72 Identities=17% Similarity=0.355 Sum_probs=59.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcc------------CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQH------------GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~------------g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
....++|||+|||+.+++++|.++|..+ +.|..+.+ +..++||||+|.+.++|..|+ .|+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 3456799999999999999999999875 23333333 235689999999999999999 6999
Q ss_pred ceeeeeeeeec
Q 034039 91 LVCRTSKDTDM 101 (105)
Q Consensus 91 ~~~~~~~~~v~ 101 (105)
..+.|..+++.
T Consensus 245 ~~~~g~~l~v~ 255 (509)
T TIGR01642 245 IIYSNVFLKIR 255 (509)
T ss_pred eEeeCceeEec
Confidence 99999998875
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.1e-11 Score=82.45 Aligned_cols=72 Identities=32% Similarity=0.474 Sum_probs=67.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..+||| +.+++..|.+.|+.+|++..+++.++. + +.|||||.|.+..+|++|++.+|...+.|+.+++|.+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 368998 899999999999999999999999998 6 99999999999999999999999999999999999753
No 65
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.25 E-value=3.9e-11 Score=76.63 Aligned_cols=79 Identities=28% Similarity=0.392 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
+...+.|+|.|||..+.+++|+++|..||.+..+.+.+++ +|.+.|.|-|.|....+|..|++.++|..++|+.+++.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999888887 899999999999999999999999999999999988765
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.23 E-value=4e-11 Score=83.72 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...+.+||++|...+...+|+.+|++||.|.-.+++.+..+...+||+||++.+..+|..+|..|+.+.|.|+-|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 45578999999999888999999999999999999999888889999999999999999999999999999999998866
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 5
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.23 E-value=4.6e-11 Score=81.05 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=68.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|+|.|||.++|++.|++-|..||.+.+..+. ++|++++ .|.|.++++|+.|+..|+|..++|+.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 34456789999999999999999999999999988873 3677775 899999999999999999999999999997
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=6.7e-11 Score=77.95 Aligned_cols=75 Identities=29% Similarity=0.453 Sum_probs=64.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHH-HcCCceeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK-EMDGLVCRTSKDT 99 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~-~l~g~~~~~~~~~ 99 (105)
++.....+|||++|...+++.+|+++|-+||+++.+.+.... ++|||+|.++.+|+.|.. .++...++|.++.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 344567899999999999999999999999999999887654 589999999999999885 5666778898888
Q ss_pred ec
Q 034039 100 DM 101 (105)
Q Consensus 100 v~ 101 (105)
+.
T Consensus 297 i~ 298 (377)
T KOG0153|consen 297 IK 298 (377)
T ss_pred EE
Confidence 75
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=6.5e-11 Score=83.79 Aligned_cols=77 Identities=32% Similarity=0.535 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC----CccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG----QSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
+.|||.||++..+.+++...|...|.|..+.|...+ .+ .+.|||||+|.+.++|+.|++.|+|+.|+|+.+.+.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 449999999999999999999999999998877654 22 2559999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 64
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.18 E-value=1.8e-10 Score=71.98 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=68.3
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKD----AFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
+..+|||.||+..+..++|+. +|++||.+..+... .+.+.+|=|||.|.+.+.|-.|++.|+|..+-|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999988776 99999999888654 36778999999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
++++
T Consensus 85 qyA~ 88 (221)
T KOG4206|consen 85 QYAK 88 (221)
T ss_pred eccc
Confidence 8875
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3e-11 Score=85.42 Aligned_cols=79 Identities=18% Similarity=0.340 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+.|.|.|+|+..+-.+++.+|..||++..++++.....+.++|||||+|-++.+|..|+..|..+.+-|+++..+-++
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 5789999999999999999999999999999998875567789999999999999999999999999999999876543
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=7.5e-11 Score=75.73 Aligned_cols=68 Identities=35% Similarity=0.544 Sum_probs=63.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
.++++|||+.|.+.-.|++++.+|..||.+..|.+.+.. .|.++|++||.|.+..+|+.||..|+|..
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSq 84 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQ 84 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccc
Confidence 367899999999999999999999999999999998887 89999999999999999999999999974
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=1.2e-10 Score=83.30 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=65.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
-+++|||++|+.++++.+|...|+.||+|..+.+... ++||||.+..+.+|++|+.+|+...+..+.+++.-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 4589999999999999999999999999999987654 48999999999999999999999999999887754
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.16 E-value=2.6e-10 Score=75.23 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
...+.|||+|||.++|.+++.++|.+||-|. .|++..+. .|..+|-|++.|-..++.+.|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4456799999999999999999999999663 47777776 69999999999999999999999999999999
Q ss_pred eeeeeccC
Q 034039 96 SKDTDMLS 103 (105)
Q Consensus 96 ~~~~v~~~ 103 (105)
+.++|.-+
T Consensus 211 ~~~rVerA 218 (382)
T KOG1548|consen 211 KKLRVERA 218 (382)
T ss_pred cEEEEehh
Confidence 99999865
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.13 E-value=6.8e-10 Score=69.70 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC-CccceEEEEeCCHHHHHHHHHHcCCceee---eeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG-QSRGYGFVKFASEAAAGEAIKEMDGLVCR---TSKD 98 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---~~~~ 98 (105)
....++|||++||.++...+|..+|+.|-..+.+.+......+ ..+.+||++|.+..+|.+|+..|||..++ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4457899999999999999999999998777666654433222 24579999999999999999999999886 4556
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+.++++
T Consensus 111 hiElAK 116 (284)
T KOG1457|consen 111 HIELAK 116 (284)
T ss_pred Eeeehh
Confidence 666654
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.12 E-value=9.5e-11 Score=77.41 Aligned_cols=75 Identities=36% Similarity=0.603 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
+...+||++|+|.++++.|+..|.+||.+..|.+.+++.++.+++|+||+|++.+...+++.. .-..++|+.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccc
Confidence 678999999999999999999999999999999999999999999999999998888887732 233444444443
No 77
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.7e-10 Score=79.89 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred ccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 18 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
.+.......++|+|-|||..+++++|..+|+.||+|+.++.. -..++..||+|.|..+|++|++.|++..+.|++
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 333334567899999999999999999999999999886543 335689999999999999999999999999988
Q ss_pred ee
Q 034039 98 DT 99 (105)
Q Consensus 98 ~~ 99 (105)
++
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 76
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.06 E-value=3.1e-10 Score=72.39 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.......+||+|+...++.+++..+|+.||.+..+.++.+.-++.+++|+||+|.+.+.++.++. |+|..+.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34567799999999999999999999999999999999998787899999999999999999997 99999999999887
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
..
T Consensus 176 ~~ 177 (231)
T KOG4209|consen 176 LK 177 (231)
T ss_pred ee
Confidence 53
No 79
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.02 E-value=4.8e-10 Score=71.40 Aligned_cols=81 Identities=33% Similarity=0.495 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...+.+||.+.|.-+++.+-|...|.+|-....-+++++..+|+++||+||.|.+..++..|++.|+|..++.+.|+..-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34678999999999999999999999998888888999999999999999999999999999999999999999887654
Q ss_pred C
Q 034039 103 S 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 3
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.01 E-value=1.2e-09 Score=72.23 Aligned_cols=75 Identities=33% Similarity=0.516 Sum_probs=64.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...+||++||..+++.++++.|.+||.|....+..+..+..+++|+||.|.+.++++.++ ...-+.+.++...|.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEe
Confidence 458999999999999999999999999999999999999999999999999999999987 334445555555444
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.99 E-value=2.3e-09 Score=73.34 Aligned_cols=77 Identities=26% Similarity=0.320 Sum_probs=62.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....|||.|||.+++.++|+++|..||.|....|......++..+||||+|.+...++.++.+= -..++++++.|+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 3456999999999999999999999999988876554334555599999999999999999653 5567777777764
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.98 E-value=9.4e-09 Score=57.31 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc--cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
++|.|.|+|...+.++|.+++.. .|....+.++.|..++...|||||.|.+...+....+.++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999888753 467788889999989999999999999999999999999999886
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=6.8e-10 Score=69.76 Aligned_cols=69 Identities=25% Similarity=0.466 Sum_probs=62.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+||++||+.+.+.++..+|..||.+.++.+. .+|+||+|.+..+|..|+..+++..+.+..+.|+.++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 58999999999999999999999999888763 2688999999999999999999999999988887765
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=6.8e-10 Score=69.46 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
....+|||+|+...++++-|.++|-+.|+|.++.++.++ .++.+ |+||.|.++.+...|++-+||..+.+..+++.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 446789999999999999999999999999999988776 66666 9999999999999999999999999998887653
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.84 E-value=2.6e-08 Score=67.29 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=66.6
Q ss_pred CceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
...|.|.||... +|.+.|..+|..||+|.++++.+++. .-|+|+|.+...|+.|+..|+|..+.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467888888765 89999999999999999999988753 459999999999999999999999999999999876
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.84 E-value=2.4e-08 Score=68.69 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+......|-+.+|||++|+++|.+||+.++ |..+.++ +.+|+..|-|||+|.+.++++.|+ +.+...+..+.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEE
Confidence 345566788899999999999999999985 6665444 447999999999999999999999 446666667777776
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 82 ~~ 83 (510)
T KOG4211|consen 82 TA 83 (510)
T ss_pred cc
Confidence 54
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.7e-08 Score=69.23 Aligned_cols=81 Identities=23% Similarity=0.477 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
......+||++||...++.++.+++..||++....++.+..+|-++||+|.+|.+......|+..|||..+.++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999999999999988899999999999999999999999999999999999876
Q ss_pred C
Q 034039 103 S 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 366 A 366 (500)
T KOG0120|consen 366 A 366 (500)
T ss_pred h
Confidence 4
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.66 E-value=1e-07 Score=68.30 Aligned_cols=76 Identities=30% Similarity=0.538 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC---CCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR---VTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
..+.+||+||++.++++.|...|..||++..+++...+ +....+-++||.|-+..++++|++.|+|..+.+..++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45789999999999999999999999999998877654 22335568999999999999999999999998887664
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.61 E-value=9.8e-08 Score=63.46 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
.....++||-+||..++++++.++|.++|.|.. +.+.++.+|+++++-|.|.|.+...|++|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345568999999999999999999999997632 566778889999999999999999999999999999999
Q ss_pred eeeeeeccCC
Q 034039 95 TSKDTDMLST 104 (105)
Q Consensus 95 ~~~~~v~~~~ 104 (105)
+..++|.++.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9888887653
No 90
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=6.8e-07 Score=55.03 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=59.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
...+...|.|++||++.++++|+++...-|.+++..+.++ +++.|+|...++.+.|+++|+...+..
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 3456789999999999999999999999999999988766 378999999999999999999876543
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=59.79 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=55.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
..++||.||.+++++++|+.+|..|.....+++... +| .+.+|++|++.+.|..|+..|+|..+.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 358999999999999999999999987777766432 33 357999999999999999999998774
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.51 E-value=5.1e-07 Score=62.29 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....|-+.+||+.|++++|.+||+..-.+.. +.++.+. .+++.|-|||.|++.+.|+.|+.. |...+..+.|.|..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 5678999999999999999999998755544 4456665 788999999999999999999954 44455555555543
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.49 E-value=1.7e-06 Score=46.74 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCHHHHH----HHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 27 TKLFIGGLSYDTNETVLK----DAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~----~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
..|||.|||.+.+...++ .++.-|| .|..+ ..+.|++.|.+.+.|.+|.+.|+|..+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999998887654 4555666 44443 12569999999999999999999999999999987
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
..
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 65
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.48 E-value=6.8e-08 Score=67.18 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
++...+++|+-.++...++.+|.++|..+|.|..+.++.++.++.++|.+||+|.+..+...|+ .|.|..+.|..+.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3445678888888888999999999999999999999999999999999999999999999999 999999999999887
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
++
T Consensus 254 ~s 255 (549)
T KOG0147|consen 254 LS 255 (549)
T ss_pred cc
Confidence 64
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.43 E-value=3.4e-07 Score=61.17 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
+.....+||+||-|++|.++|.+.+...| ++..+++-.++.+|.++||+++...+..+.+..++.|..+.|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34556899999999999999988887766 6677788888889999999999999999999999999999999887766
Q ss_pred c
Q 034039 101 M 101 (105)
Q Consensus 101 ~ 101 (105)
.
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 4
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.40 E-value=1.2e-06 Score=49.66 Aligned_cols=59 Identities=29% Similarity=0.420 Sum_probs=38.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
..|.+.+++..++.++|+..|..||.|.++.+.... ..|+|.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 468888999999999999999999999999886543 36999999999999998765543
No 97
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.39 E-value=1.9e-07 Score=59.76 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=62.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC--------CCc----cceEEEEeCCHHHHHHHHHHcCCce
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT--------GQS----RGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~~----~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
....||++++|+.+...-|+++|..||.|-++.+.....+ |.. ..-|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988655423 222 2347899999999999999999999
Q ss_pred eeeeeee
Q 034039 93 CRTSKDT 99 (105)
Q Consensus 93 ~~~~~~~ 99 (105)
|.|+.-.
T Consensus 153 Iggkk~S 159 (278)
T KOG3152|consen 153 IGGKKKS 159 (278)
T ss_pred cCCCCCC
Confidence 9988643
No 98
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.9e-06 Score=59.77 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=62.9
Q ss_pred ccCCCCCceEEEcCCCCCCCH------HHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 20 LSDANSRTKLFIGGLSYDTNE------TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 20 ~~~~~~~~~l~v~~l~~~~~~------~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
..++.....|.|.|.|---.. ..|..+|+++|++....++.+.. |+.+||.|++|++..+|+.|+++|||+.+
T Consensus 52 ~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 52 VTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred CccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhccccee
Confidence 334466778999999864322 23577899999999999998874 45999999999999999999999999988
Q ss_pred e-eeeeee
Q 034039 94 R-TSKDTD 100 (105)
Q Consensus 94 ~-~~~~~v 100 (105)
+ ++...|
T Consensus 131 dknHtf~v 138 (698)
T KOG2314|consen 131 DKNHTFFV 138 (698)
T ss_pred cccceEEe
Confidence 6 333443
No 99
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.30 E-value=2.3e-06 Score=57.89 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=68.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccC-CeEE--EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
.......|.+.+||...+.++|.+||..|. .+.. ++++.+. .|.+.|-|||+|.+.++|.+|..+.+.+.-+.+.+
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 344567899999999999999999998876 3444 6778776 78899999999999999999999988888788888
Q ss_pred eeccC
Q 034039 99 TDMLS 103 (105)
Q Consensus 99 ~v~~~ 103 (105)
.|..+
T Consensus 355 Evfp~ 359 (508)
T KOG1365|consen 355 EVFPC 359 (508)
T ss_pred EEeec
Confidence 88754
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.21 E-value=1.5e-05 Score=50.32 Aligned_cols=77 Identities=23% Similarity=0.389 Sum_probs=65.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee-eeeeeec
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-TSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-~~~~~v~ 101 (105)
..+...+++.|+|..++.+.+..+|.+|.....++++... .+.+||+|.+...+..|...++|..+. ...+++.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567789999999999999999999999998888877543 368999999999999999999999887 6666666
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 554
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.20 E-value=7.1e-06 Score=59.18 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=64.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
+.|-+.|+|+.++-+++.+||..|-.. ..+.+.++ ..|+..|.|.|.|++.++|.+|...|++..|.++.+.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 478889999999999999999999755 34444444 4799999999999999999999999999999998887654
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.16 E-value=8e-06 Score=54.56 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=59.2
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHHhccCCeEEEEEEecCC--CCCccce-EEEEeCCHHHHHHHHHHcCCceeeee
Q 034039 26 RTKLFIGGLSYDTNETV----L--KDAFGQHGEIIEVKVICDRV--TGQSRGY-GFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~----l--~~~f~~~g~v~~~~~~~~~~--~~~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
.+-+||-+||+.+..++ | .++|.+||.|..+.+.+... +.....+ .||+|...++|.++|...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45789999998876655 2 56899999999987754431 1111112 39999999999999999999999999
Q ss_pred eeeecc
Q 034039 97 KDTDML 102 (105)
Q Consensus 97 ~~~v~~ 102 (105)
.++..+
T Consensus 194 ~lkatY 199 (480)
T COG5175 194 VLKATY 199 (480)
T ss_pred eEeeec
Confidence 998754
No 103
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=4.9e-06 Score=52.58 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=61.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....+.+.+.+++..+.+++|.++|..+|++..... ..+++||.|...+++..|+..|+|..+.++.+.++.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 446678999999999999999999999999833322 235799999999999999999999999999998754
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.98 E-value=3.5e-05 Score=38.36 Aligned_cols=52 Identities=25% Similarity=0.443 Sum_probs=40.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 85 (105)
+.|-|.|.++...+. +..+|..||+|....+... ....++.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 457788888776655 4558889999999887522 247899999999999885
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.96 E-value=6.4e-06 Score=54.36 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=66.0
Q ss_pred CCceEE-EcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 25 SRTKLF-IGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 25 ~~~~l~-v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...++| +++++..++.++|+..|..+|.+..++++.+..++...|++++.|.+...+..++.. +...+.+..+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 344555 999999999999999999999999999999999999999999999999999988876 7777777766554
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=5e-05 Score=53.04 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=59.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 86 (105)
.-++.++||||+||.-++.++|..+|. -||.|..+-|-.|++-..++|-|=|+|.+..+-.+||.
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 345778999999999999999999998 69999999999997788899999999999999999985
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.95 E-value=0.00012 Score=49.70 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
.+...+.|-+|... ++.+.|..+|-.||.|.++++.+.. .|-|.|++.+....++|+..||+..+-|.+|.+-.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 35678889999876 6778899999999999999988765 25799999999999999999999999999998877
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 65
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.90 E-value=8e-05 Score=49.85 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCCceEEEcCCCC----CCC-------HHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 24 NSRTKLFIGGLSY----DTN-------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 24 ~~~~~l~v~~l~~----~~~-------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
...++|.+.|+=. ..+ .++|..-..+||++..+.+.-.. +.|.+-|.|.+.+.|..+|+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCee
Confidence 3456777777521 122 23455567889999998765333 45788899999999999999999999
Q ss_pred eeeeeeeeccC
Q 034039 93 CRTSKDTDMLS 103 (105)
Q Consensus 93 ~~~~~~~v~~~ 103 (105)
++|++|.+.+.
T Consensus 339 fdgRql~A~i~ 349 (382)
T KOG1548|consen 339 FDGRQLTASIW 349 (382)
T ss_pred ecceEEEEEEe
Confidence 99999998764
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00015 Score=50.73 Aligned_cols=64 Identities=27% Similarity=0.512 Sum_probs=47.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC---CCCCccc---eEEEEeCCHHHHHHHHHH
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR---VTGQSRG---YGFVKFASEAAAGEAIKE 87 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~g---~~fv~f~~~~~a~~a~~~ 87 (105)
...++.||||+||++++++.|...|..||.+. +.++... ....++| |.|+.|+++.+...-+..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 34678999999999999999999999999752 2333111 1122456 999999999888876644
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.70 E-value=0.00055 Score=46.72 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=49.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhc----cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQ----HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~----~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 87 (105)
.-.|...+||.++++.++.+||.. -|....+.++... +|+..|-||+.|...++|+.|+.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH
Confidence 446777899999999999999963 1244566666665 789999999999999999999954
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.66 E-value=9.8e-05 Score=54.67 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=61.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
.....+.+++++|++++....|...|..||.+..+.+-.. ..|++|.|++...++.|++.|-|..+.+..-
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 4456789999999999999999999999999998876433 2689999999999999999999999976543
No 112
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.63 E-value=0.00036 Score=39.23 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEE-EEecC------CCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVK-VICDR------VTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-~~~~~------~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
..+.|.|-|.|+. ....+...|++||.|.... +..+. .......+-.|.|.++.+|.+|+ .-||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3456778899988 4566788999999986653 10000 00112247889999999999999 66888887654
Q ss_pred e
Q 034039 98 D 98 (105)
Q Consensus 98 ~ 98 (105)
+
T Consensus 83 m 83 (100)
T PF05172_consen 83 M 83 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 113
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.60 E-value=0.00031 Score=48.16 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=60.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeee-eeeec
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTS-KDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~-~~~v~ 101 (105)
.+..++..+|+|+++++++++..|..-|.. .-..+ -++.+.++++.+.+.+.|-.|+..++.+.+... .++|.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf-----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF-----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee-----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 345688899999999999999999887754 33333 233456999999999999999999999988654 78888
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 487 FSk 489 (492)
T KOG1190|consen 487 FSK 489 (492)
T ss_pred eec
Confidence 765
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.54 E-value=0.00045 Score=41.23 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=43.9
Q ss_pred HHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 42 VLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 42 ~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+|.+.|..||.+.-++++.+ .-+|+|.+-.+|.+|+ .++|..+.|+.+++.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeC
Confidence 56777889998887777643 3689999999999999 89999999999998864
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.51 E-value=0.00017 Score=49.61 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=55.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec---CC--CCCc--------cceEEEEeCCHHHHHHHHHHcCC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD---RV--TGQS--------RGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~--~~~~--------~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
-..++|.+-|||.+..-+.|.++|..+|.|..+++... +. .+.. +-+|+|+|..-+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36788999999999988999999999999999988654 21 1221 45789999999999999988865
Q ss_pred ce
Q 034039 91 LV 92 (105)
Q Consensus 91 ~~ 92 (105)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 116
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.47 E-value=0.0021 Score=32.96 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcc---CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHc
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQH---GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 88 (105)
...|+|.|+. +.+.++++.+|..| ....+++++-|. -|-|.|.+...|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999986 47778899999988 235678887665 3779999999999999765
No 117
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.46 E-value=0.00075 Score=36.56 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
...+..+++ +|......+|.++|+.||.|.-- ++-+ .-|||...+++.+..++..+.-
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEEE-EECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEEE-EEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 345566665 99999999999999999987443 3333 2599999999999999877763
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=0.00065 Score=47.96 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=47.0
Q ss_pred HHHHHhccCCeEEEEEEecCCCCC---ccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 43 LKDAFGQHGEIIEVKVICDRVTGQ---SRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 43 l~~~f~~~g~v~~~~~~~~~~~~~---~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
++.-+.+||.|..|.++.+...+. ..|--||+|.+.++++.|.+.|+|.++.++.+...
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvts 487 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVAS 487 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEE
Confidence 444567899999999887722222 34667999999999999999999999999987654
No 119
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=0.00027 Score=45.64 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=55.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
..|||.||+..+..+.+..-|+.||++..-.+..|. .+++.+-++|.|.....+..|++.+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhcc
Confidence 689999999999999999999999999887666665 788888999999999999999988743
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.29 E-value=0.00034 Score=48.27 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=53.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc-eeeeeeeeecc
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL-VCRTSKDTDML 102 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~-~~~~~~~~v~~ 102 (105)
+.+|++||.+..+..+|..+|...---..-.+... .||+|+.+.+..-|..|++.++|. .+.|++..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 36899999999999999999976421112222222 279999999999999999999987 57788877654
No 121
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.13 E-value=0.00021 Score=46.05 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=47.0
Q ss_pred HHHHHHh-ccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 42 VLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 42 ~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
++...+. +||.+..+.+-.+. ..-..|-.||.|...++|++|++.||+..+.|+++...++
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 4444455 78988887554332 2224567899999999999999999999999999988764
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.00 E-value=0.0003 Score=51.94 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=62.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...++|+|.|+..|.+.++.++..+|.+....++..+ .|+++|.+++.|.+..++..+..+.+...+.-..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~ 810 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQ 810 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcccc
Confidence 3579999999999999999999999999888887776 89999999999999999999887766655544444443
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.98 E-value=0.0021 Score=44.08 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=59.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...|.|.||.++++.++++.+|.-.|.|..+.+..+.. -......|||-|.+...+..|. .|-++.+-++.+.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 34899999999999999999999999998887654221 1223457999999988887776 7888888777766643
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.92 E-value=0.0018 Score=40.07 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc-cCCe---EEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQ-HGEI---IEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v---~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
.....|.|++||+..+++++...+.. +++- ....-......-. ...-|||.|.+.+++......++|..+...+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999998876665 5544 2332112211111 2345899999999999999999998775443
No 125
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.81 E-value=0.0012 Score=47.30 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee---eee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR---TSK 97 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---~~~ 97 (105)
....++.|+|.||-.-+|..+|+.++.. +|.|....| | +-+.+|||.|.+.++|-+....|||..+. .+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999984 555554432 2 13468999999999999999999998763 455
Q ss_pred eeeccC
Q 034039 98 DTDMLS 103 (105)
Q Consensus 98 ~~v~~~ 103 (105)
|.+.+.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 555543
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.76 E-value=0.00083 Score=49.01 Aligned_cols=76 Identities=14% Similarity=-0.003 Sum_probs=60.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
-...|||..||..+++..+.+.|...-.|.+ +.+.+.. +++.++.|||.|...+.+..|...-+...+..+.|+|.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 4579999999999999999999987666655 7776666 78888999999999888888875555556666777765
No 127
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.73 E-value=0.041 Score=31.51 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=45.6
Q ss_pred ceEEEcCCCCC-CCHHHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 27 TKLFIGGLSYD-TNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 27 ~~l~v~~l~~~-~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
..+.+-..|+. .+.+.|..+...+- .+..+++.++. ...+-..++.|.+..+|......+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444555 45455655545443 56778887764 2245568999999999999999999987653
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.59 E-value=0.015 Score=38.65 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCeEEEEEEecCCCCCcc-ceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 41 TVLKDAFGQHGEIIEVKVICDRVTGQSR-GYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 41 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
++..+-..+||.|.+|.+.......... ---||+|...++|..|+-.|||..+.|+....
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 3567778899999988766554332222 23699999999999999999999999998764
No 129
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.48 E-value=0.023 Score=39.06 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=49.8
Q ss_pred ceEEEcCC--CCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 27 TKLFIGGL--SYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 27 ~~l~v~~l--~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
..|.+.=| -..+|.+.|..+....|+|.++.+... +|. -|.|+|++.+.|++|.+.|||..|-.
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccc
Confidence 34444433 345788899999999999999977654 443 38999999999999999999987743
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.45 E-value=0.0013 Score=44.05 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=56.6
Q ss_pred CceEEEcCCCCCCCHHHH---HHHHhccCCeEEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 26 RTKLFIGGLSYDTNETVL---KDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l---~~~f~~~g~v~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
.+-+||-+|+.....+.+ ...|.+||.+..+....+.. .....+-++|+|...++|..+|...+|..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788889887655443 34688999998887766441 111223489999999999999999999999998865
Q ss_pred ecc
Q 034039 100 DML 102 (105)
Q Consensus 100 v~~ 102 (105)
..+
T Consensus 157 a~~ 159 (327)
T KOG2068|consen 157 ASL 159 (327)
T ss_pred Hhh
Confidence 543
No 131
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.23 E-value=0.011 Score=42.38 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhc--cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC--ceeeeeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LVCRTSKDTD 100 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~v 100 (105)
..+.+.++-+|..+..++++.+|.. |-.+..|++..+.. =||+|++..+|+.|.+.|.. +.+.|+.|++
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4567778999999999999999975 77889998877652 48999999999999877664 3566666655
Q ss_pred cc
Q 034039 101 ML 102 (105)
Q Consensus 101 ~~ 102 (105)
.+
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.21 E-value=0.00018 Score=53.04 Aligned_cols=63 Identities=29% Similarity=0.453 Sum_probs=53.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
.++|++||+..+.+.+|...|..+|.+..+++..-..+++.+|+||+.|.+.+.+.+|+....
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 578999999999999999999999988777665444578899999999999999999985433
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.78 E-value=0.02 Score=40.80 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=38.7
Q ss_pred cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 50 HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 50 ~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
.|...++.++.|..+....|||||.|.+.+.+..+.+++||..+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W 456 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKW 456 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCch
Confidence 56667788888888888899999999999999999999999864
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.74 E-value=0.086 Score=37.03 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=55.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCCccc-eEEEEeCCHHHHHHHHHHcCCceee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQH-GEIIEVKVICDRVTGQSRG-YGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g-~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
.+++.|.|-.+|-.++-.+|..|...+ ..|..++++++ |.+.. ..+|.|.+..+|......+||..+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 347889999999999999999888754 46788998884 33333 4689999999999999999998765
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.65 E-value=0.045 Score=34.16 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=43.3
Q ss_pred CHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcC--CceeeeeeeeeccC
Q 034039 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLVCRTSKDTDMLS 103 (105)
Q Consensus 39 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~~~~~~v~~~ 103 (105)
..+.|+++|..++.+......... +-..|.|.+.+.|.+|...|+ +..+.|..+++.++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 347789999999988776655433 347899999999999999999 99999999888654
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.37 E-value=0.089 Score=27.76 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=37.5
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhccC-----CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 28 KLFIG-GLSYDTNETVLKDAFGQHG-----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 28 ~l~v~-~l~~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
++||. |--..++..+|..++...+ .|-.+.+.. .|+|++.. .+.+..++..|++..+.|+.++++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE--TT-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEE
Confidence 34552 2234578888888887654 455666532 36888877 457888999999999999999987
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.31 E-value=0.12 Score=30.99 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=44.1
Q ss_pred CCCCCceEEEcCCCCCCCH-HH---HHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc
Q 034039 22 DANSRTKLFIGGLSYDTNE-TV---LKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~-~~---l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
.+.+-.+|.|.=|..++.. ++ +...++.||+|..+-.- | +.-|.|.|.+..+|=.|+.+++..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCC
Confidence 3445567778766655433 34 45556789999887542 2 235999999999999999888753
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.98 E-value=0.0047 Score=46.25 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=60.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
...+||++||+..+++.+++..|..+|.+..+.+-... -+....|+|+.|.+-..+..|+..+.+..|....++.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 45799999999999999999999999999888775543 2333458999999999999998888887776544443
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.30 E-value=0.021 Score=40.12 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=49.2
Q ss_pred eEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 28 KLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 28 ~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.+-+.-.|+. .+.++|..+|.+||.|..|.+-+.. -.|.|+|.+..+|-.|. ..++..|+++-+++.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEE
Confidence 4444444555 3568899999999999999886552 36899999999987666 566777777776664
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.81 E-value=0.051 Score=39.67 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=58.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++||+|+...+..+-+..++..||-|..+... -|||..|........|+..+.-..+++..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 4466789999999999999999999999988766432 289999999999999999998888888776554
No 141
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=1.2 Score=31.26 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=52.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
+..-.+.|-|-++|.....++|...|..|+. -.++.++-+. ++|-.|.+...|..|+. |....+.-+.
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt-~kh~~lKiRp 455 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT-LKHDWLKIRP 455 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh-ccCceEEeee
Confidence 4445678889999999999999999999874 4777777664 79999999999999994 4544554444
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.02 E-value=0.1 Score=39.42 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=52.5
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee--eeeeeeeccCC
Q 034039 31 IGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC--RTSKDTDMLST 104 (105)
Q Consensus 31 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~--~~~~~~v~~~~ 104 (105)
+.|.+-..+-..|..++..||.+...+..++- -++.|.|..-+.|..|+.+++|+++ .|-..+|++++
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 33344455666788999999999888776654 3689999999999999999999976 46667776654
No 143
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.86 E-value=1.5 Score=29.58 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
.=|-|-++|+.-. ..+..+|.+||.|.+.... + +| -+-+|.|.++.+|++|| .-||..|++..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~-ng---NwMhirYssr~~A~KAL-skng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--S-NG---NWMHIRYSSRTHAQKAL-SKNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC--C-CC---ceEEEEecchhHHHHhh-hhcCeeeccce
Confidence 3344457776533 4567789999988665433 1 33 37789999999999999 45676666543
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.72 E-value=1.1 Score=23.28 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 37 DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 37 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
.++-++++..+..|+ ..++ ..++ +| =||.|.+..+|+++....+|..+-+-++.
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 357788999999985 3333 3343 32 48999999999999999999988777654
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.55 E-value=0.2 Score=33.38 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=55.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
...+.|++++.+...+.+...++..+|......+.........++++++.|+..+.+..++.......+.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 4678899999998888877788888887766666555557778899999999999999999544333444333
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.80 E-value=0.007 Score=42.08 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=57.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEE-ecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVI-CDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.++.+-|.|+|+...++.|..++..||.+..|..+ .+..+ ...-++|...+.++-|+.+++|..+....+++-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 45678899999999999999999999999888643 33322 122367888999999999999998877766654
No 147
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.05 E-value=5.5 Score=26.87 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=47.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC-------CCCCccceEEEEeCCHHHHHHH
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-------VTGQSRGYGFVKFASEAAAGEA 84 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~a 84 (105)
+-..+.|...|+..+++-..+...|..||+|+.+.+..+. ...+......+.|-+++.+...
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 3456678889999999988889999999999999987654 1223345677888888887664
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.68 E-value=9.9 Score=25.73 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=34.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCCccceEEEEeCCH
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASE 78 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~~fv~f~~~ 78 (105)
-.+-||++||+.+..-.+|+.-+++-+-+ .++.+ ..+.+-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 34679999999999999999999876532 23322 22556799999653
No 149
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=15 Score=27.23 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=55.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEEecC----------CCCC---------------------
Q 034039 23 ANSRTKLFIGGLSYD-TNETVLKDAFGQH----GEIIEVKVICDR----------VTGQ--------------------- 66 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~v~~~~~~~~~----------~~~~--------------------- 66 (105)
....++|-|-|+.|. +...+|.-+|..| |.|..+.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456778999999998 6778888887765 466776664321 1121
Q ss_pred ----------------ccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 67 ----------------SRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 67 ----------------~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
-.=||.|+|.+...|.+....++|..+......
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 012788999999999999999999988755444
No 150
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=75.77 E-value=9 Score=19.63 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.6
Q ss_pred HHHHHHHhccCCeEEEEEE
Q 034039 41 TVLKDAFGQHGEIIEVKVI 59 (105)
Q Consensus 41 ~~l~~~f~~~g~v~~~~~~ 59 (105)
++|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999999777653
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=74.85 E-value=0.53 Score=32.81 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=47.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
..+++|.+|+..+...++.+.|..+|.+.+..+.-.. ...+|-+.|....+..-|++ ++|..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr-~~gre 212 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALR-SHGRE 212 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHH-hcchh
Confidence 3679999999999999999999999998777664322 33466789988888888874 34443
No 152
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=70.24 E-value=15 Score=20.15 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHH
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDA 46 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~ 46 (105)
..+.++|.++|+|....+++|++.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheee
Confidence 346778999999999999998854
No 153
>PRK11901 hypothetical protein; Reviewed
Probab=68.12 E-value=22 Score=24.43 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=39.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEE--EEeCCHHHHHHHHHHcCCc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGF--VKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~f--v~f~~~~~a~~a~~~l~g~ 91 (105)
...+|-+..+ ..++.|..|...++ +..+.+.....+|+. .|.. =.|.+.++|..|+..|...
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3455655544 35777888887765 344444444435543 3443 3789999999999988754
No 154
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=60.80 E-value=20 Score=25.13 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
..+.|..||+..++.++.+....+-. +....+.....+-. -.+.+||.|...++.......++|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35778899999999988777666532 22222321110111 245689999999999999999999875
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=56.82 E-value=22 Score=22.21 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 85 (105)
.....+++.+++...+...+...|..+|.+....+.............++.+.....+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 45568899999999999999999999999866666554422223333333333333333333
No 156
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=52.93 E-value=1.6 Score=31.85 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=49.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
.+.+++.|++++.+-++|......+-.+.+..+.....-.+...++.+.|.--.....|+..||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4678999999999999999998877555554443322112234567888887777777888888876543
No 157
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=50.57 E-value=23 Score=23.77 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.6
Q ss_pred EEEEeCCHHHHHHHHHHcCCce
Q 034039 71 GFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 71 ~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
|||+|.+..+|+.+++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 6999999999999998665544
No 158
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.80 E-value=9 Score=24.08 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=42.7
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeee-eeee
Q 034039 27 TKLFIGGLSYDTNE-----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTS-KDTD 100 (105)
Q Consensus 27 ~~l~v~~l~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~-~~~v 100 (105)
+++.+-+++..+.. .....+|+++.+....++.+. .+.--|.|.+...|..|...+++..+.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 34555566655322 123556776655444443322 23456889999999999999999999888 4443
No 159
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.06 E-value=2.3 Score=30.33 Aligned_cols=49 Identities=8% Similarity=-0.212 Sum_probs=34.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeC
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFA 76 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~ 76 (105)
..++..+|...++.++...|..||-|........-..|.....+|+...
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~ 53 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK 53 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee
Confidence 3456678888899999999999998877765444334444455666544
No 160
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=47.92 E-value=31 Score=17.83 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=21.2
Q ss_pred eEEEEeCCHHHHHHHHHHcCCceeeee
Q 034039 70 YGFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 70 ~~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
+.++.|.+...|.++-+.|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 578999999999999887776655443
No 161
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=43.65 E-value=36 Score=17.85 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=23.6
Q ss_pred HHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCC
Q 034039 41 TVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFAS 77 (105)
Q Consensus 41 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~ 77 (105)
.++.+-|...| ++..+.-+..+.+..+...-+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~ 39 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVP 39 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeee
Confidence 35667777777 67777766666455555566666653
No 162
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=42.91 E-value=54 Score=17.53 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=23.6
Q ss_pred ccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 67 SRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
.+||-||+=.+..+...|++.+.+.....
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred CceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 67899999999999999998887765443
No 163
>PRK10905 cell division protein DamX; Validated
Probab=42.36 E-value=1.1e+02 Score=21.12 Aligned_cols=64 Identities=19% Similarity=0.043 Sum_probs=38.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcc-ceEEEEeCCHHHHHHHHHHcCCc
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSR-GYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
...++|-|+.+. ..+.+..+..+.|- ....+.....+|+.. -.-+=.|.++.+|++|+..|...
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 344667766555 55777777777753 322233333355421 12234789999999999988753
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=39.50 E-value=36 Score=22.45 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV 56 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 56 (105)
.....+|+-|+|..++++.|..+...+|.+...
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345689999999999999999999988855443
No 165
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=38.81 E-value=43 Score=18.93 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=16.8
Q ss_pred cceEEEEeCCHHHHHHHHHHc
Q 034039 68 RGYGFVKFASEAAAGEAIKEM 88 (105)
Q Consensus 68 ~g~~fv~f~~~~~a~~a~~~l 88 (105)
.-|+.++|.++....++..++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 347889999999999887653
No 166
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.65 E-value=68 Score=17.44 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=38.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHc
Q 034039 29 LFIGGLSYDTNETVLKDAFGQ-HG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (105)
Q Consensus 29 l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 88 (105)
-|.--.+...+..+++..++. || .+..+...... . ..--|||.+....+|.....++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 344456888999999888876 66 55666544333 2 2235999999888888766544
No 167
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.55 E-value=80 Score=18.21 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCC-HHHHHHHH
Q 034039 38 TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAI 85 (105)
Q Consensus 38 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~ 85 (105)
.+.+.|.+.|+.|.+++ +....+. ..+.|+++|.|.+ ..-...|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 35578999999998875 4444554 2478999999974 44444444
No 168
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=37.94 E-value=90 Score=18.66 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=19.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 67 SRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
+-|..++-|.++++|++..+...|..+.
T Consensus 113 pMg~~~~aF~~~~~A~~F~~~~GG~v~~ 140 (149)
T PF05573_consen 113 PMGPDLIAFASKEDAEAFAKEHGGKVLT 140 (149)
T ss_dssp TTS--EEEES-HHHHHHHHHHTEEEEEE
T ss_pred CCCCcccccCCHHHHHHHHHHcCCEEee
Confidence 3467899999999999999887655544
No 169
>PF14893 PNMA: PNMA
Probab=36.60 E-value=34 Score=23.66 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=24.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc-cCCeEEEE
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVK 57 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~ 57 (105)
+..+.+.|.++|.++.++++++.+.. ..++-+.+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yr 50 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYR 50 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccce
Confidence 45678999999999999998887653 33433333
No 170
>PHA01632 hypothetical protein
Probab=36.28 E-value=51 Score=16.50 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=15.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhc
Q 034039 29 LFIGGLSYDTNETVLKDAFGQ 49 (105)
Q Consensus 29 l~v~~l~~~~~~~~l~~~f~~ 49 (105)
+.|..+|...++++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 344688999999999877543
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.87 E-value=78 Score=17.31 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=27.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEe
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKF 75 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f 75 (105)
.-+||++++..+.+.-...+....++-. .-+.....+ ..||.|-..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~~n--eqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSDNN--EQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEccCC--CCCEEEEEe
Confidence 4599999988777665555554444333 333343323 568888766
No 172
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.79 E-value=61 Score=22.05 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=25.9
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHHhccCCeEEEEEE
Q 034039 26 RTKLFIGGLSYD------------TNETVLKDAFGQHGEIIEVKVI 59 (105)
Q Consensus 26 ~~~l~v~~l~~~------------~~~~~l~~~f~~~g~v~~~~~~ 59 (105)
..+||+.++|-. .+++-|...|..||.|..+.++
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 456888887742 4567799999999999888764
No 173
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.75 E-value=47 Score=15.03 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=9.8
Q ss_pred CCCCHHHHHHHHhccC
Q 034039 36 YDTNETVLKDAFGQHG 51 (105)
Q Consensus 36 ~~~~~~~l~~~f~~~g 51 (105)
..+++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998754
No 174
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=29.59 E-value=62 Score=18.94 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHhc---cCCeEEEEEEecCCCCCccceEEEEeCCHH
Q 034039 35 SYDTNETVLKDAFGQ---HGEIIEVKVICDRVTGQSRGYGFVKFASEA 79 (105)
Q Consensus 35 ~~~~~~~~l~~~f~~---~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~ 79 (105)
|...|-.+++++|+. |..|.+-.+.++-.-..+...||..|....
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 345788999999974 555555444444322334557888887543
No 175
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=29.04 E-value=20 Score=18.61 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=16.6
Q ss_pred cccCCCCCceEEEcCCCCCCCHHH
Q 034039 19 LLSDANSRTKLFIGGLSYDTNETV 42 (105)
Q Consensus 19 ~~~~~~~~~~l~v~~l~~~~~~~~ 42 (105)
+..-...+.++|||++|..+-.+.
T Consensus 20 p~~Ls~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 20 PEELSLTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HHHHHHcCceEEECCCChHHHHcC
Confidence 333445778999999998655443
No 176
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.86 E-value=92 Score=17.27 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcC
Q 034039 33 GLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 33 ~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
++.+..+...+...|..-|.- ....+..| .=+++|-|.|.+.+.+..|.+.|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHHH
Confidence 345566666666555544421 11122222 235789999999999988876654
No 177
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=28.66 E-value=76 Score=14.98 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=20.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCe
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEI 53 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v 53 (105)
.+++.+........+|.+.+..+|.-
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 56777776677889999999998863
No 178
>PF15063 TC1: Thyroid cancer protein 1
Probab=27.75 E-value=47 Score=17.79 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=21.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCe
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEI 53 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v 53 (105)
+--+.|+=.+++..+|+.+|..-|+.
T Consensus 27 KkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 27 KKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhccCHHHHHHHHHHccch
Confidence 34456777889999999999999864
No 179
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=27.50 E-value=1.2e+02 Score=20.34 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=23.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKV 58 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 58 (105)
.....|+|||.+++..-+.+++...-.+....+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 345678999999999998888876544434333
No 180
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=27.40 E-value=90 Score=15.42 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=18.0
Q ss_pred CCHHHHHHHHhccCCeEEEEEEe
Q 034039 38 TNETVLKDAFGQHGEIIEVKVIC 60 (105)
Q Consensus 38 ~~~~~l~~~f~~~g~v~~~~~~~ 60 (105)
+..+++.+.|+..|...+|.|..
T Consensus 30 ~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 30 LDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCHHHHHHHHHHcCCCcceeeec
Confidence 34478888899999888888764
No 181
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=26.99 E-value=37 Score=25.01 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=31.0
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 69 GYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 69 g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.++++.|++...+..|+..++|....+..+++.+.
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLG 98 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhc
Confidence 58999999999999999999999988888777653
No 182
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=26.97 E-value=1e+02 Score=15.90 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=29.9
Q ss_pred HHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHH--HHHcCCcee
Q 034039 41 TVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEA--IKEMDGLVC 93 (105)
Q Consensus 41 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a--~~~l~g~~~ 93 (105)
+++.+-|...| ++..+.-+....+..+...-||+.+...+...+ ++.|.+..+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~Ik~l~~~~V 57 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKIKTLCGQRV 57 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeehHhhCCeEE
Confidence 35666676666 666666555554566666778877655432222 344444443
No 183
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=33 Score=24.42 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=42.6
Q ss_pred CceEEEcCCCCCCCH--------HHHHHHHhc--cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 034039 26 RTKLFIGGLSYDTNE--------TVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~--------~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 85 (105)
.+.+|+.+++..-.. +++...|.. .+....+...++..+...+|.-|++|.....+++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 356677666655333 378888887 556666666666555667788899999999999876
No 184
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.31 E-value=2.1e+02 Score=20.98 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=39.6
Q ss_pred EcCCCCCC---CHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 31 IGGLSYDT---NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 31 v~~l~~~~---~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
||||+.-. ....+.++=.+||++-.+++-.. -.|...+.+.|+.++.. +|..+.+|..
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 56666443 33455666668999987776322 35777899999999944 6777777664
No 185
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=25.29 E-value=1.3e+02 Score=17.14 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=15.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHh
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFG 48 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~ 48 (105)
+...+.+++++|| +.+++..|+.
T Consensus 61 ekeg~~i~~g~lP---t~~eVe~Fl~ 83 (105)
T PF09702_consen 61 EKEGNYIIVGYLP---TDEEVEDFLD 83 (105)
T ss_pred cCCCCEEecCCCC---ChHHHHHHHH
Confidence 4456789999998 4556665554
No 186
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.56 E-value=95 Score=24.34 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=20.0
Q ss_pred cceEEEEeCCHHHHHHHHHHcCCce
Q 034039 68 RGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 68 ~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
.+.+||+|++...|+.|.+..-+..
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr 381 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSR 381 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhh
Confidence 4579999999999999988754443
No 187
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=22.94 E-value=1.3e+02 Score=15.57 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=14.8
Q ss_pred eEEEEeCCHHHHHHHHHHcC
Q 034039 70 YGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 70 ~~fv~f~~~~~a~~a~~~l~ 89 (105)
..-+.|.+...|+.+.+.|.
T Consensus 4 ~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHhC
Confidence 45688999999999887654
No 188
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=1.4e+02 Score=21.67 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=27.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEE
Q 034039 23 ANSRTKLFIGGLSYD-TNETVLKDAFGQH----GEIIEVKVI 59 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~v~~~~~~ 59 (105)
.+...+|.|-|+.|. +...+|...|+.| |.+.++.+.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 456678999999997 6667888887754 466666654
No 189
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=21.81 E-value=25 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc
Q 034039 40 ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 40 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
...+.+.+.+.|.+.+-.+.+-. +-|.+|+..-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 34566777778876554443322 3367888888999999999988865
No 190
>PHA01627 DNA binding protein
Probab=21.22 E-value=1.6e+02 Score=16.88 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=26.8
Q ss_pred EEEeCCHHHHHHHHHHcCCceeeeeeeeeccCCC
Q 034039 72 FVKFASEAAAGEAIKEMDGLVCRTSKDTDMLSTG 105 (105)
Q Consensus 72 fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~~ 105 (105)
|+..--+++...++..|-|..+.-.++.+++..|
T Consensus 40 ~vSaIGH~sTA~lls~llg~~ip~NRi~i~~~~G 73 (107)
T PHA01627 40 FVSAIGHDATANLLSNLCGVNLPKNRIEIKLDKG 73 (107)
T ss_pred eEEeeccHHHHHHHHHHhCccccccceEEEecCC
Confidence 5666667888888899999998888888777654
No 191
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=21.22 E-value=2.2e+02 Score=17.67 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=16.3
Q ss_pred EeCCHHHHHHHHHHcCCceee
Q 034039 74 KFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 74 ~f~~~~~a~~a~~~l~g~~~~ 94 (105)
-|.+++.|++....--|+.+.
T Consensus 132 pF~~e~aA~~faa~~GGrvl~ 152 (176)
T COG4314 132 PFSDEEAAERFAADNGGRVLR 152 (176)
T ss_pred cccCHHHHHHHHHhcCCeEEe
Confidence 389999999988776666554
No 192
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.64 E-value=1.4e+02 Score=17.99 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=20.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHcCCc
Q 034039 67 SRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
..||-||+.....++..+++.+.+.
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 5689999999888888888877764
No 193
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=20.04 E-value=1.3e+02 Score=16.54 Aligned_cols=47 Identities=13% Similarity=0.298 Sum_probs=24.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCCccceEEEEeC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFA 76 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~~fv~f~ 76 (105)
.-+||++++..+.+.-...+-+. .++ -.+-+.... ....||.|-++-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~--~~e~G~~~~t~G 73 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSS--NTCPGFEFFTLG 73 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeC--CCCCCcEEEecC
Confidence 45999988877665543333333 232 222233332 224467877654
Done!