Query 034039
Match_columns 105
No_of_seqs 112 out of 1235
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9.3E-25 3.2E-29 122.1 10.7 80 25-104 18-97 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 8.7E-24 3E-28 120.2 11.1 81 24-104 4-84 (110)
3 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.8E-23 2E-27 111.5 9.8 82 23-104 4-85 (85)
4 2la6_A RNA-binding protein FUS 99.9 9.6E-23 3.3E-27 113.7 10.5 83 22-104 9-99 (99)
5 2cqc_A Arginine/serine-rich sp 99.9 1.7E-22 5.9E-27 111.7 11.2 83 22-104 11-93 (95)
6 2e5h_A Zinc finger CCHC-type a 99.9 1.3E-22 4.4E-27 112.1 10.6 82 23-104 13-94 (94)
7 3md1_A Nuclear and cytoplasmic 99.9 2.2E-22 7.5E-27 108.8 10.7 78 27-104 2-79 (83)
8 2cpz_A CUG triplet repeat RNA- 99.9 2.5E-22 8.5E-27 114.7 11.2 83 22-104 21-103 (115)
9 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.8E-22 6E-27 110.0 10.1 81 24-104 4-84 (87)
10 2khc_A Testis-specific RNP-typ 99.9 1.1E-22 3.9E-27 116.6 9.7 83 22-104 36-118 (118)
11 2kxn_B Transformer-2 protein h 99.9 1.1E-22 3.8E-27 118.6 9.7 83 22-104 42-124 (129)
12 3p5t_L Cleavage and polyadenyl 99.9 3.5E-23 1.2E-27 113.7 6.7 78 27-104 2-81 (90)
13 1x5u_A Splicing factor 3B subu 99.9 2.4E-22 8.1E-27 113.1 10.2 84 21-104 10-93 (105)
14 2do4_A Squamous cell carcinoma 99.9 5.2E-22 1.8E-26 110.8 11.5 82 22-104 13-94 (100)
15 2jrs_A RNA-binding protein 39; 99.9 3.7E-22 1.3E-26 113.1 10.8 83 22-104 22-104 (108)
16 2dgo_A Cytotoxic granule-assoc 99.9 6.8E-22 2.3E-26 112.9 12.0 83 22-104 11-93 (115)
17 2x1f_A MRNA 3'-END-processing 99.9 3E-22 1E-26 111.1 10.0 79 26-104 2-80 (96)
18 2cq0_A Eukaryotic translation 99.9 2.8E-22 9.5E-27 112.5 9.8 83 22-104 11-93 (103)
19 2dnz_A Probable RNA-binding pr 99.9 3.8E-22 1.3E-26 110.4 10.2 81 24-104 3-83 (95)
20 2lkz_A RNA-binding protein 5; 99.9 4.1E-23 1.4E-27 114.7 6.2 82 23-104 6-93 (95)
21 2dnm_A SRP46 splicing factor; 99.9 1.1E-22 3.8E-27 114.1 8.1 84 21-104 8-91 (103)
22 2lxi_A RNA-binding protein 10; 99.9 2.4E-23 8.4E-28 114.7 5.2 79 26-104 1-81 (91)
23 1whw_A Hypothetical protein ri 99.9 3.5E-22 1.2E-26 111.3 10.0 82 23-104 5-86 (99)
24 1p27_B RNA-binding protein 8A; 99.9 4.6E-22 1.6E-26 112.1 10.4 82 23-104 20-101 (106)
25 2ywk_A Putative RNA-binding pr 99.9 5.1E-22 1.8E-26 109.8 10.4 81 23-104 13-93 (95)
26 3ulh_A THO complex subunit 4; 99.9 5.9E-22 2E-26 111.8 10.7 83 22-105 25-107 (107)
27 3ns6_A Eukaryotic translation 99.9 7.4E-23 2.5E-27 114.5 6.5 80 24-103 4-90 (100)
28 3n9u_C Cleavage and polyadenyl 99.9 5.7E-22 2E-26 118.9 10.6 80 25-104 54-135 (156)
29 2dgs_A DAZ-associated protein 99.9 6.2E-22 2.1E-26 110.3 10.0 82 22-104 6-87 (99)
30 1x4h_A RNA-binding protein 28; 99.9 9.3E-22 3.2E-26 111.6 10.7 83 22-104 11-99 (111)
31 4f25_A Polyadenylate-binding p 99.9 6.5E-22 2.2E-26 113.2 9.9 77 26-104 5-81 (115)
32 3s7r_A Heterogeneous nuclear r 99.9 1.2E-21 4.1E-26 106.8 10.4 81 22-103 7-87 (87)
33 2div_A TRNA selenocysteine ass 99.9 9.1E-22 3.1E-26 109.6 10.1 82 23-104 6-92 (99)
34 1oo0_B CG8781-PA, drosophila Y 99.9 7.1E-22 2.4E-26 112.0 9.7 82 23-104 23-104 (110)
35 2cpf_A RNA binding motif prote 99.9 8.4E-22 2.9E-26 109.6 9.8 81 24-104 3-86 (98)
36 2dnh_A Bruno-like 5, RNA bindi 99.9 1.9E-21 6.4E-26 109.4 11.2 81 23-104 12-95 (105)
37 1u6f_A Tcubp1, RNA-binding pro 99.9 1.4E-21 4.7E-26 114.9 11.0 83 22-104 38-120 (139)
38 1x5t_A Splicing factor 3B subu 99.9 4E-22 1.4E-26 110.4 8.1 81 24-104 3-84 (96)
39 2fy1_A RNA-binding motif prote 99.9 8.1E-22 2.8E-26 113.0 9.5 82 22-104 3-84 (116)
40 2cph_A RNA binding motif prote 99.9 1.3E-21 4.5E-26 110.3 10.2 83 22-104 11-95 (107)
41 2dhg_A TRNA selenocysteine ass 99.9 1.6E-21 5.6E-26 109.5 10.5 82 22-104 5-88 (104)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.2E-22 1.4E-26 111.5 7.9 82 23-104 9-90 (102)
43 2cqp_A RNA-binding protein 12; 99.9 5.1E-22 1.7E-26 110.5 8.1 82 23-104 12-93 (98)
44 1x5s_A Cold-inducible RNA-bind 99.9 4.9E-22 1.7E-26 111.3 7.8 82 23-104 9-90 (102)
45 3ucg_A Polyadenylate-binding p 99.9 1.4E-21 4.9E-26 106.8 9.5 78 26-104 6-83 (89)
46 1x4e_A RNA binding motif, sing 99.9 4.3E-22 1.5E-26 108.2 7.3 80 24-103 3-82 (85)
47 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 2.1E-21 7.3E-26 114.0 10.9 82 22-103 59-140 (140)
48 2d9p_A Polyadenylate-binding p 99.9 2.1E-21 7.2E-26 108.9 10.1 80 23-104 12-91 (103)
49 2cqd_A RNA-binding region cont 99.9 2.2E-21 7.4E-26 111.0 10.2 83 21-104 12-94 (116)
50 2cpe_A RNA-binding protein EWS 99.9 1.3E-21 4.5E-26 111.4 9.2 83 22-104 11-101 (113)
51 2dgp_A Bruno-like 4, RNA bindi 99.9 8.8E-22 3E-26 110.9 8.4 83 22-104 9-94 (106)
52 2do0_A HnRNP M, heterogeneous 99.9 3.6E-21 1.2E-25 109.7 11.0 82 22-104 11-92 (114)
53 2jwn_A Embryonic polyadenylate 99.9 4.1E-22 1.4E-26 115.1 7.2 79 25-104 35-113 (124)
54 2ek1_A RNA-binding protein 12; 99.9 5.2E-22 1.8E-26 109.8 7.2 80 25-104 14-93 (95)
55 2lea_A Serine/arginine-rich sp 99.9 1.9E-22 6.4E-27 118.4 5.5 88 17-104 38-125 (135)
56 2cq4_A RNA binding motif prote 99.9 3.4E-22 1.2E-26 114.0 6.4 79 24-103 23-101 (114)
57 4a8x_A RNA-binding protein wit 99.9 1.1E-21 3.9E-26 106.9 8.2 80 25-104 3-83 (88)
58 2dng_A Eukaryotic translation 99.9 5E-21 1.7E-25 107.4 10.8 80 23-104 12-91 (103)
59 3ex7_B RNA-binding protein 8A; 99.9 1.7E-21 6E-26 112.8 9.0 82 23-104 19-100 (126)
60 2dh8_A DAZ-associated protein 99.9 3.9E-21 1.3E-25 108.1 10.1 82 22-104 12-93 (105)
61 2dgv_A HnRNP M, heterogeneous 99.9 4.9E-21 1.7E-25 105.3 10.3 80 23-104 5-84 (92)
62 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.6E-21 1.9E-25 114.3 11.3 81 24-104 37-117 (156)
63 2cqi_A Nucleolysin TIAR; RNA r 99.9 8E-21 2.7E-25 106.5 11.2 81 22-104 11-91 (103)
64 1s79_A Lupus LA protein; RRM, 99.9 2.1E-21 7.1E-26 109.2 8.7 78 23-102 8-85 (103)
65 2kt5_A RNA and export factor-b 99.9 5.7E-21 1.9E-25 110.4 10.6 81 23-104 32-112 (124)
66 2cq3_A RNA-binding protein 9; 99.9 1.2E-20 4.3E-25 105.7 11.7 81 22-104 11-91 (103)
67 1p1t_A Cleavage stimulation fa 99.9 2.3E-21 8E-26 108.8 8.3 80 25-104 7-86 (104)
68 2m2b_A RNA-binding protein 10; 99.9 8.6E-22 2.9E-26 114.9 6.7 81 23-104 20-106 (131)
69 1wi8_A EIF-4B, eukaryotic tran 99.9 5.3E-21 1.8E-25 107.4 9.6 79 24-104 13-92 (104)
70 2dgx_A KIAA0430 protein; RRM d 99.9 5.2E-21 1.8E-25 106.2 9.4 78 24-104 7-88 (96)
71 2mss_A Protein (musashi1); RNA 99.9 1.1E-21 3.9E-26 104.1 6.2 75 28-103 1-75 (75)
72 2dgw_A Probable RNA-binding pr 99.9 8.2E-21 2.8E-25 104.3 9.8 79 23-104 7-85 (91)
73 2err_A Ataxin-2-binding protei 99.9 3.1E-21 1.1E-25 109.4 8.2 82 21-104 24-105 (109)
74 2rs2_A Musashi-1, RNA-binding 99.9 4.9E-21 1.7E-25 108.6 8.9 83 21-104 20-102 (109)
75 1x4a_A Splicing factor, argini 99.9 2.7E-20 9.1E-25 105.3 11.9 80 22-104 18-97 (109)
76 2nlw_A Eukaryotic translation 99.9 2.9E-21 1E-25 108.8 7.8 81 22-104 11-98 (105)
77 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1.1E-21 3.8E-26 109.6 6.0 81 22-104 15-96 (100)
78 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.1E-20 3.6E-25 114.1 10.6 82 23-104 69-150 (165)
79 2cqg_A TDP-43, TAR DNA-binding 99.9 3.6E-20 1.2E-24 103.8 11.9 80 23-104 12-91 (103)
80 2kn4_A Immunoglobulin G-bindin 99.8 8.4E-21 2.9E-25 113.6 9.6 81 24-104 68-148 (158)
81 1x5o_A RNA binding motif, sing 99.8 2.7E-20 9.2E-25 106.0 11.0 81 22-103 21-109 (114)
82 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-20 5.9E-25 105.5 9.8 76 23-104 13-90 (105)
83 2krb_A Eukaryotic translation 99.8 3.1E-21 1.1E-25 103.9 6.4 73 26-100 1-80 (81)
84 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-20 4.5E-25 102.3 8.8 74 25-104 6-79 (89)
85 2cpi_A CCR4-NOT transcription 99.8 1E-20 3.5E-25 107.5 8.6 81 24-104 13-99 (111)
86 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.9E-21 6.4E-26 103.7 5.2 76 27-103 1-76 (77)
87 3q2s_C Cleavage and polyadenyl 99.8 5.9E-21 2E-25 120.7 8.2 80 25-104 67-148 (229)
88 2hgl_A HNRPF protein, heteroge 99.8 4.7E-21 1.6E-25 112.5 7.2 81 22-104 40-123 (136)
89 1wg5_A Heterogeneous nuclear r 99.8 1.1E-20 3.8E-25 106.3 8.5 81 22-104 11-92 (104)
90 2db1_A Heterogeneous nuclear r 99.8 8.9E-21 3E-25 108.9 8.2 81 22-104 13-96 (118)
91 1x4b_A Heterogeneous nuclear r 99.8 6E-21 2E-25 109.1 7.4 79 25-104 26-104 (116)
92 4f02_A Polyadenylate-binding p 99.8 2.8E-20 9.6E-25 116.1 10.9 80 24-103 13-92 (213)
93 2jvr_A Nucleolar protein 3; RN 99.8 8.2E-21 2.8E-25 108.0 7.5 78 23-104 25-103 (111)
94 2ki2_A SS-DNA binding protein 99.8 1.1E-21 3.8E-26 107.5 3.7 77 27-104 2-78 (90)
95 3md3_A Nuclear and cytoplasmic 99.8 3.5E-20 1.2E-24 110.8 10.3 82 23-104 84-165 (166)
96 2dis_A Unnamed protein product 99.8 1.4E-20 4.7E-25 106.5 8.0 81 24-104 6-90 (109)
97 2a3j_A U1 small nuclear ribonu 99.8 2.3E-20 7.8E-25 108.5 9.0 79 23-104 26-108 (127)
98 2dnn_A RNA-binding protein 12; 99.8 1.1E-20 3.9E-25 107.1 7.5 78 24-104 14-91 (109)
99 1wel_A RNA-binding protein 12; 99.8 3.7E-21 1.3E-25 111.2 5.6 81 23-104 22-102 (124)
100 1x4c_A Splicing factor, argini 99.8 1.2E-19 4E-24 102.7 11.5 74 24-104 13-91 (108)
101 2g4b_A Splicing factor U2AF 65 99.8 5.3E-20 1.8E-24 110.9 10.7 100 4-103 70-171 (172)
102 3r27_A HnRNP L, heterogeneous 99.8 3.2E-20 1.1E-24 103.5 8.8 77 22-104 17-95 (100)
103 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-20 4.1E-25 105.9 7.1 79 23-104 12-90 (102)
104 2cpy_A RNA-binding protein 12; 99.8 1.2E-20 4E-25 107.7 7.0 80 23-104 12-92 (114)
105 2ytc_A PRE-mRNA-splicing facto 99.8 6.2E-20 2.1E-24 99.5 9.4 76 23-104 9-85 (85)
106 2xnq_A Nuclear polyadenylated 99.8 9.3E-20 3.2E-24 101.3 10.2 75 22-104 18-93 (97)
107 2fc9_A NCL protein; structure 99.8 5.1E-20 1.8E-24 102.8 9.0 79 22-104 11-89 (101)
108 2jvo_A Nucleolar protein 3; nu 99.8 7.4E-20 2.5E-24 103.6 9.6 75 22-104 27-101 (108)
109 2dnq_A RNA-binding protein 4B; 99.8 1.3E-19 4.6E-24 99.2 10.3 74 23-104 5-78 (90)
110 2fc8_A NCL protein; structure 99.8 1.2E-19 4.1E-24 101.4 10.0 80 22-104 11-90 (102)
111 2e5j_A Methenyltetrahydrofolat 99.8 7.7E-20 2.6E-24 101.5 9.0 78 22-104 15-92 (97)
112 1iqt_A AUF1, heterogeneous nuc 99.8 6.2E-21 2.1E-25 101.2 4.3 75 28-103 1-75 (75)
113 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-19 4.6E-24 103.3 10.0 78 24-104 6-83 (115)
114 2lmi_A GRSF-1, G-rich sequence 99.8 9.2E-21 3.2E-25 107.1 5.0 81 22-104 7-90 (107)
115 1fxl_A Paraneoplastic encephal 99.8 1.7E-19 5.8E-24 107.9 10.8 79 26-104 2-80 (167)
116 1nu4_A U1A RNA binding domain; 99.8 2.4E-20 8E-25 103.4 6.5 80 22-104 4-87 (97)
117 2cpx_A Hypothetical protein FL 99.8 9.1E-21 3.1E-25 108.1 4.9 82 23-104 22-103 (115)
118 1wf1_A RNA-binding protein RAL 99.8 1.6E-19 5.4E-24 102.3 9.9 73 24-104 25-98 (110)
119 2qfj_A FBP-interacting repress 99.8 1.1E-19 3.9E-24 112.9 10.1 81 24-104 123-203 (216)
120 1why_A Hypothetical protein ri 99.8 2E-19 6.7E-24 99.8 10.0 76 23-104 14-91 (97)
121 1x4g_A Nucleolysin TIAR; struc 99.8 1.6E-19 5.5E-24 102.2 9.7 77 22-104 21-97 (109)
122 2j8a_A Histone-lysine N-methyl 99.8 4.1E-20 1.4E-24 106.7 7.2 78 27-104 3-94 (136)
123 1x4d_A Matrin 3; structural ge 99.8 3.1E-20 1.1E-24 104.1 6.4 75 24-104 13-90 (102)
124 1b7f_A Protein (SXL-lethal pro 99.8 1.3E-19 4.3E-24 108.7 9.5 100 4-103 65-168 (168)
125 2la4_A Nuclear and cytoplasmic 99.8 1.5E-19 5E-24 101.0 9.1 76 23-104 24-99 (101)
126 1fj7_A Nucleolin RBD1, protein 99.8 4.4E-21 1.5E-25 107.2 2.8 80 23-104 14-93 (101)
127 2f3j_A RNA and export factor b 99.8 8.9E-20 3E-24 111.3 8.5 80 24-104 86-165 (177)
128 1wex_A Hypothetical protein (r 99.8 1.8E-19 6.1E-24 101.4 9.0 75 24-104 13-89 (104)
129 2cq1_A PTB-like protein L; RRM 99.8 3.9E-19 1.3E-23 99.5 10.2 76 23-104 12-89 (101)
130 2ad9_A Polypyrimidine tract-bi 99.8 1.3E-19 4.3E-24 104.1 8.1 77 22-104 27-105 (119)
131 1b7f_A Protein (SXL-lethal pro 99.8 1.9E-19 6.5E-24 108.0 9.3 80 25-104 2-81 (168)
132 3pgw_S U1-70K; protein-RNA com 99.8 2.3E-19 7.9E-24 122.3 10.8 81 24-104 100-180 (437)
133 2lcw_A RNA-binding protein FUS 99.7 1.5E-21 5.1E-26 111.7 0.0 82 23-104 4-93 (116)
134 2cpj_A Non-POU domain-containi 99.8 1.6E-19 5.4E-24 100.5 8.2 76 23-104 12-87 (99)
135 2yh0_A Splicing factor U2AF 65 99.8 3.2E-19 1.1E-23 109.5 10.3 81 24-104 112-192 (198)
136 2dgt_A RNA-binding protein 30; 99.8 3.3E-19 1.1E-23 98.0 9.2 75 22-104 6-80 (92)
137 2dha_A FLJ20171 protein; RRM d 99.8 6.7E-20 2.3E-24 105.9 6.5 78 24-103 21-102 (123)
138 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-18 3.7E-23 97.2 11.2 74 23-104 12-87 (99)
139 1fxl_A Paraneoplastic encephal 99.8 2.5E-19 8.4E-24 107.2 9.0 99 4-102 64-166 (167)
140 2dnp_A RNA-binding protein 14; 99.8 4.6E-19 1.6E-23 97.1 9.2 74 23-104 6-79 (90)
141 2hvz_A Splicing factor, argini 99.8 7.8E-20 2.7E-24 102.1 6.2 73 27-104 1-73 (101)
142 2xs2_A Deleted in azoospermia- 99.8 6.1E-20 2.1E-24 102.7 5.5 75 24-101 7-81 (102)
143 2i2y_A Fusion protein consists 99.8 3.2E-19 1.1E-23 106.0 8.9 77 23-104 70-146 (150)
144 1whx_A Hypothetical protein ri 99.8 1.2E-19 4.3E-24 103.1 6.6 74 25-104 9-82 (111)
145 2e5g_A U6 snRNA-specific termi 99.8 1.1E-18 3.6E-23 96.4 10.1 75 24-104 6-80 (94)
146 1fjc_A Nucleolin RBD2, protein 99.8 8.6E-20 2.9E-24 101.0 5.6 77 23-104 13-89 (96)
147 2dgu_A Heterogeneous nuclear r 99.8 6.4E-19 2.2E-23 98.7 9.3 73 24-104 9-81 (103)
148 2kvi_A Nuclear polyadenylated 99.8 2.5E-19 8.7E-24 99.3 7.4 74 23-104 7-81 (96)
149 1x4f_A Matrin 3; structural ge 99.8 1.4E-19 4.6E-24 103.0 6.3 77 22-104 21-100 (112)
150 2e44_A Insulin-like growth fac 99.8 3.5E-19 1.2E-23 98.6 7.8 77 24-104 13-90 (96)
151 4f02_A Polyadenylate-binding p 99.8 4.1E-19 1.4E-23 110.9 8.8 78 25-104 102-179 (213)
152 1l3k_A Heterogeneous nuclear r 99.8 9E-19 3.1E-23 107.4 10.2 81 22-103 9-89 (196)
153 2hgn_A Heterogeneous nuclear r 99.8 5.3E-20 1.8E-24 108.4 4.1 79 23-104 43-121 (139)
154 2hgm_A HNRPF protein, heteroge 99.8 1.9E-19 6.5E-24 104.4 6.3 78 23-103 39-118 (126)
155 3egn_A RNA-binding protein 40; 99.8 7.1E-20 2.4E-24 108.1 4.6 81 23-104 42-128 (143)
156 3beg_B Splicing factor, argini 99.8 2.8E-19 9.5E-24 102.2 6.7 68 24-98 14-81 (115)
157 1wg1_A KIAA1579 protein, homol 99.8 5.2E-19 1.8E-23 96.6 7.5 73 25-104 4-76 (88)
158 3nmr_A Cugbp ELAV-like family 99.8 1.2E-18 4.1E-23 105.0 9.1 78 25-103 94-174 (175)
159 2cqh_A IGF-II mRNA-binding pro 99.8 5.1E-19 1.8E-23 97.4 6.7 74 24-104 6-81 (93)
160 1sjr_A Polypyrimidine tract-bi 99.8 2E-18 6.8E-23 103.7 9.6 77 24-104 44-122 (164)
161 3md3_A Nuclear and cytoplasmic 99.8 1.3E-18 4.5E-23 103.9 8.8 76 27-103 1-76 (166)
162 2qfj_A FBP-interacting repress 99.8 2.2E-18 7.6E-23 107.0 9.9 79 25-103 27-105 (216)
163 2dnl_A Cytoplasmic polyadenyla 99.8 1.1E-18 3.7E-23 99.5 7.0 68 24-92 6-79 (114)
164 2cq2_A Hypothetical protein LO 99.8 2.6E-18 8.8E-23 97.9 8.2 75 23-103 22-103 (114)
165 3zzy_A Polypyrimidine tract-bi 99.8 8.9E-18 3E-22 97.6 10.4 76 24-104 26-104 (130)
166 3tyt_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 106.3 9.3 75 25-104 3-78 (205)
167 1x5p_A Negative elongation fac 99.8 1.8E-17 6.1E-22 91.9 10.9 74 23-104 12-85 (97)
168 1l3k_A Heterogeneous nuclear r 99.8 8.5E-18 2.9E-22 103.0 10.3 79 25-104 103-181 (196)
169 2hzc_A Splicing factor U2AF 65 99.8 4.3E-18 1.5E-22 92.5 7.8 71 24-101 4-85 (87)
170 3smz_A Protein raver-1, ribonu 99.8 7.3E-18 2.5E-22 108.8 10.1 98 3-104 76-173 (284)
171 2cjk_A Nuclear polyadenylated 99.8 1.4E-18 4.9E-23 104.1 6.0 79 25-104 86-164 (167)
172 2diu_A KIAA0430 protein; struc 99.8 1.2E-17 4E-22 91.6 8.8 69 26-104 9-82 (96)
173 2voo_A Lupus LA protein; RNA-b 99.8 1.2E-17 4.1E-22 103.1 10.0 77 26-104 109-185 (193)
174 3nmr_A Cugbp ELAV-like family 99.7 9.6E-18 3.3E-22 101.0 9.4 70 25-94 2-73 (175)
175 3smz_A Protein raver-1, ribonu 99.7 1.5E-17 5E-22 107.4 10.1 80 24-104 182-262 (284)
176 1fje_B Nucleolin RBD12, protei 99.7 8.1E-18 2.8E-22 101.6 8.3 76 24-104 97-172 (175)
177 2e5i_A Heterogeneous nuclear r 99.7 2.8E-17 9.5E-22 95.0 10.0 72 27-104 26-100 (124)
178 2cjk_A Nuclear polyadenylated 99.7 8.6E-18 2.9E-22 100.7 7.8 77 25-103 2-78 (167)
179 2pe8_A Splicing factor 45; RRM 99.7 4.9E-17 1.7E-21 91.5 10.3 81 24-104 6-92 (105)
180 3d2w_A TAR DNA-binding protein 99.7 2.1E-17 7.1E-22 90.5 8.5 72 23-103 8-81 (89)
181 3pgw_A U1-A; protein-RNA compl 99.7 2.4E-17 8.1E-22 106.3 10.1 80 22-104 5-88 (282)
182 2ghp_A U4/U6 snRNA-associated 99.7 8.4E-18 2.9E-22 108.9 7.1 80 24-104 208-289 (292)
183 2adc_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 103.0 9.3 78 22-104 30-108 (229)
184 2bz2_A Negative elongation fac 99.7 3.8E-17 1.3E-21 94.1 8.1 74 23-104 36-109 (121)
185 3pgw_A U1-A; protein-RNA compl 99.7 1.4E-16 4.6E-21 102.8 11.2 77 24-105 205-282 (282)
186 3sde_A Paraspeckle component 1 99.7 7.4E-17 2.5E-21 103.4 8.6 95 4-103 78-176 (261)
187 1wf0_A TDP-43, TAR DNA-binding 99.7 3.1E-17 1.1E-21 89.4 4.3 71 24-103 3-75 (88)
188 3u1l_A PRE-mRNA-splicing facto 99.7 1.2E-16 4E-21 101.4 7.5 76 23-104 131-227 (240)
189 3sde_A Paraspeckle component 1 99.7 3.2E-16 1.1E-20 100.4 9.1 76 23-104 19-94 (261)
190 1fje_B Nucleolin RBD12, protei 99.7 1.4E-17 4.7E-22 100.6 2.4 81 22-104 9-89 (175)
191 1qm9_A Polypyrimidine tract-bi 99.7 7.5E-17 2.6E-21 99.2 5.8 74 26-104 3-77 (198)
192 2ghp_A U4/U6 snRNA-associated 99.7 2.8E-16 9.6E-21 101.7 8.6 94 4-103 100-194 (292)
193 3tyt_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 98.9 6.8 71 25-97 122-194 (205)
194 2adc_A Polypyrimidine tract-bi 99.7 4.7E-16 1.6E-20 97.9 8.6 75 25-104 150-226 (229)
195 1jmt_A Splicing factor U2AF 35 99.7 5E-17 1.7E-21 91.3 3.4 72 31-103 20-103 (104)
196 2dit_A HIV TAT specific factor 99.7 2.1E-15 7.1E-20 85.6 9.8 79 22-104 11-100 (112)
197 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-15 4.1E-20 93.8 8.3 75 25-104 119-195 (198)
198 2g4b_A Splicing factor U2AF 65 99.6 2.4E-15 8.3E-20 90.3 8.7 73 25-104 3-86 (172)
199 3v4m_A Splicing factor U2AF 65 99.6 2.1E-15 7.1E-20 84.9 7.4 79 25-103 4-94 (105)
200 2yh0_A Splicing factor U2AF 65 99.6 4E-15 1.4E-19 91.2 8.4 73 25-104 3-86 (198)
201 3ue2_A Poly(U)-binding-splicin 99.6 8.4E-15 2.9E-19 83.9 7.9 79 25-103 19-106 (118)
202 3tht_A Alkylated DNA repair pr 99.5 3.7E-14 1.3E-18 94.1 7.8 66 23-94 15-82 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.4E-13 4.8E-18 76.7 8.2 62 36-104 27-88 (100)
204 1owx_A Lupus LA protein, SS-B, 99.4 4.7E-13 1.6E-17 76.7 7.0 77 22-104 14-94 (121)
205 3s6e_A RNA-binding protein 39; 99.4 2.2E-13 7.5E-18 77.6 5.5 75 25-103 6-90 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 2.4E-12 8.3E-17 69.9 6.6 72 24-104 5-84 (91)
207 3dxb_A Thioredoxin N-terminall 99.2 8.6E-11 2.9E-15 73.5 7.4 66 38-103 141-210 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 7.2E-11 2.5E-15 64.4 5.4 72 23-103 12-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.8 7.1E-08 2.4E-12 53.9 8.0 71 25-101 20-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.3 8.4E-06 2.9E-10 44.6 7.8 58 23-89 13-70 (100)
211 1uw4_A UPF3X; nonsense mediate 98.2 1.5E-05 5E-10 43.3 8.0 70 27-96 2-73 (91)
212 1wey_A Calcipressin 1; structu 98.1 1.1E-05 3.7E-10 44.7 6.0 73 25-103 4-81 (104)
213 3ctr_A Poly(A)-specific ribonu 97.9 2.8E-05 9.7E-10 42.6 4.8 55 26-89 6-60 (101)
214 2dhx_A Poly (ADP-ribose) polym 97.7 0.00054 1.8E-08 37.8 8.3 56 24-87 6-66 (104)
215 2l08_A Regulator of nonsense t 97.7 7.5E-05 2.6E-09 40.9 4.6 71 26-96 9-81 (97)
216 1wwh_A Nucleoporin 35, nucleop 97.6 0.00044 1.5E-08 39.2 6.6 63 25-95 23-85 (119)
217 3pq1_A Poly(A) RNA polymerase; 97.0 0.00048 1.6E-08 47.5 3.2 54 26-85 53-106 (464)
218 2kn4_A Immunoglobulin G-bindin 96.5 0.0033 1.1E-07 36.7 3.8 33 56-90 3-35 (158)
219 2i2y_A Fusion protein consists 96.4 0.0012 4.1E-08 38.4 1.4 40 64-104 9-49 (150)
220 3p3d_A Nucleoporin 53; structu 95.7 0.015 5.1E-07 33.5 3.8 75 25-101 6-94 (132)
221 3d45_A Poly(A)-specific ribonu 94.7 0.19 6.5E-06 35.1 7.6 57 25-90 439-495 (507)
222 2g0c_A ATP-dependent RNA helic 75.1 6.2 0.00021 19.7 5.3 68 28-104 2-75 (76)
223 4eyt_A Telomerase associated p 40.1 43 0.0015 17.9 8.2 56 25-88 11-66 (129)
224 3lpe_A Putative transcription 36.2 38 0.0013 17.7 2.8 25 67-91 49-73 (92)
225 1xn9_A 30S ribosomal protein S 33.1 61 0.0021 17.5 5.2 48 36-84 28-80 (101)
226 3fut_A Dimethyladenosine trans 30.9 72 0.0025 20.2 3.9 32 27-59 111-142 (271)
227 1ywx_A 30S ribosomal protein S 29.9 71 0.0024 17.3 5.4 47 36-83 28-79 (102)
228 2exu_A Transcription initiatio 29.5 78 0.0027 19.4 3.7 28 67-94 148-175 (200)
229 2hpu_A NOSL protein; alpha bet 29.4 88 0.003 18.6 3.9 27 70-96 112-138 (175)
230 4e8u_A Putative uncharacterize 29.3 94 0.0032 18.6 7.2 45 38-85 33-80 (172)
231 2v94_A RPS24, 30S ribosomal pr 28.9 76 0.0026 17.3 5.0 46 37-83 38-88 (107)
232 2lfv_A Protein DAMX; cell divi 34.9 12 0.00041 20.4 0.0 62 26-92 25-88 (106)
233 3h7h_B Transcription elongatio 28.7 42 0.0014 18.2 2.2 26 67-92 50-75 (106)
234 3ts2_A Protein LIN-28 homolog 28.5 8.3 0.00028 22.3 -0.7 10 67-76 20-29 (148)
235 3mfb_A Uncharacterized protein 25.6 1.1E+02 0.0037 18.0 5.1 37 38-74 3-42 (157)
236 3uzu_A Ribosomal RNA small sub 24.4 31 0.0011 22.0 1.4 34 27-60 115-148 (279)
237 2g1d_A 30S ribosomal protein S 24.4 69 0.0024 17.2 2.5 45 37-82 30-79 (98)
238 4aj5_1 SKA3, spindle and kinet 21.4 41 0.0014 18.2 1.2 11 41-51 91-101 (101)
239 3p8b_B Transcription antitermi 20.9 93 0.0032 17.7 2.8 25 67-91 42-66 (152)
240 1qyr_A KSGA, high level kasuga 20.6 1.1E+02 0.0039 19.0 3.4 29 28-56 92-120 (252)
241 3tqs_A Ribosomal RNA small sub 20.6 32 0.0011 21.5 0.8 32 29-60 99-130 (255)
242 3fry_A Probable copper-exporti 20.0 85 0.0029 14.7 5.0 58 27-92 7-64 (73)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=9.3e-25 Score=122.15 Aligned_cols=80 Identities=29% Similarity=0.482 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|++.|||..+.|+.|+|..++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999998774
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=8.7e-24 Score=120.23 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++|++.|||..+.|+.++|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34678999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 3
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.90 E-value=5.8e-23 Score=111.50 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..+.++|||+|||+++++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999887999999999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 4
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=9.6e-23 Score=113.69 Aligned_cols=83 Identities=25% Similarity=0.334 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
.....++|||+|||+++++++|+++|.+||.+.. +.+..++.+|.++|||||+|.+.++|+.|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred eeeeeeeccCC
Q 034039 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|..++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999998874
No 5
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.7e-22 Score=111.68 Aligned_cols=83 Identities=27% Similarity=0.378 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 875
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=112.07 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.+++||||+|.+.++|+.|++.|||..+.|+.++|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=2.2e-22 Score=108.75 Aligned_cols=78 Identities=31% Similarity=0.489 Sum_probs=74.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+|||+|||+++++++|+++|..||.+..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|..++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 579999999999999999999999999999999998899999999999999999999999999999999999998875
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=2.5e-22 Score=114.74 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 101 ~a~ 103 (115)
T 2cpz_A 101 LKR 103 (115)
T ss_dssp CCC
T ss_pred EcC
Confidence 865
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=110.03 Aligned_cols=81 Identities=32% Similarity=0.507 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.89 E-value=1.1e-22 Score=116.58 Aligned_cols=83 Identities=31% Similarity=0.440 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 864
No 11
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.89 E-value=1.1e-22 Score=118.57 Aligned_cols=83 Identities=28% Similarity=0.396 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 122 ~a~ 124 (129)
T 2kxn_B 122 FSI 124 (129)
T ss_dssp CCS
T ss_pred Eec
Confidence 875
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=3.5e-23 Score=113.74 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=72.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+|||+|||+++++++|+++|..|| .+..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.++|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999998764
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=113.07 Aligned_cols=84 Identities=36% Similarity=0.504 Sum_probs=78.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567789999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 90 ~~a~ 93 (105)
T 1x5u_A 90 NKAS 93 (105)
T ss_dssp EETT
T ss_pred EECC
Confidence 8764
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.2e-22 Score=110.82 Aligned_cols=82 Identities=24% Similarity=0.561 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 92 ~a~ 94 (100)
T 2do4_A 92 ISN 94 (100)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 15
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=113.07 Aligned_cols=83 Identities=25% Similarity=0.537 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 102 ~a~ 104 (108)
T 2jrs_A 102 HVT 104 (108)
T ss_dssp CSC
T ss_pred Ecc
Confidence 875
No 16
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=6.8e-22 Score=112.87 Aligned_cols=83 Identities=33% Similarity=0.512 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 91 ~a~ 93 (115)
T 2dgo_A 91 WAT 93 (115)
T ss_dssp ESS
T ss_pred Ecc
Confidence 764
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=3e-22 Score=111.07 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||..+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|+.|++.|+|..+.|+.++|..++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999999998889999999999999999999999999999999999998875
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.8e-22 Score=112.49 Aligned_cols=83 Identities=28% Similarity=0.397 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 91 ~a~ 93 (103)
T 2cq0_A 91 WAK 93 (103)
T ss_dssp ESS
T ss_pred ECC
Confidence 764
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-22 Score=110.37 Aligned_cols=81 Identities=26% Similarity=0.518 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 83 ~ 83 (95)
T 2dnz_A 83 T 83 (95)
T ss_dssp S
T ss_pred c
Confidence 4
No 20
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=4.1e-23 Score=114.65 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCC--eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc----eeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGE--IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----VCRTS 96 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~----~~~~~ 96 (105)
...-.+|||+|||+.+|+++|+++|++||. +..++++.++.+|.++|||||+|.+.++|++|++.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 578999999989999999999999999999999999996 58999
Q ss_pred eeeeccCC
Q 034039 97 KDTDMLST 104 (105)
Q Consensus 97 ~~~v~~~~ 104 (105)
.+.|.+++
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999886
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=114.10 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=78.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
++....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 88 ~~a~ 91 (103)
T 2dnm_A 88 QVAR 91 (103)
T ss_dssp EECS
T ss_pred EECC
Confidence 8875
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=114.70 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=73.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcC-CceeeeeeeeeccC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD-GLVCRTSKDTDMLS 103 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-g~~~~~~~~~v~~~ 103 (105)
+++|||+|||+++++++|+++|++|| .|..++++.++.+|.++|||||+|.+.++|++|++.++ +..+.|+.++|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999998899999999999999999999998875 56799999999886
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=111.28 Aligned_cols=82 Identities=29% Similarity=0.429 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 85 a~ 86 (99)
T 1whw_A 85 ST 86 (99)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.6e-22 Score=112.08 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|+.|+..|+|..+.|+.++|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 100 a~ 101 (106)
T 1p27_B 100 CF 101 (106)
T ss_dssp SE
T ss_pred ec
Confidence 63
No 25
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.88 E-value=5.1e-22 Score=109.82 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4567899999999999999999999999999999999988 588999999999999999999999999999999999998
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 26
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=5.9e-22 Score=111.78 Aligned_cols=83 Identities=24% Similarity=0.381 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCC
Q 034039 102 LSTG 105 (105)
Q Consensus 102 ~~~~ 105 (105)
++++
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8753
No 27
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.88 E-value=7.4e-23 Score=114.50 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee-e
Q 034039 24 NSRTKLFIGGLSY------DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT-S 96 (105)
Q Consensus 24 ~~~~~l~v~~l~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~-~ 96 (105)
...++|||+|||. .+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4467999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred eeeeccC
Q 034039 97 KDTDMLS 103 (105)
Q Consensus 97 ~~~v~~~ 103 (105)
.++|..+
T Consensus 84 ~l~V~~a 90 (100)
T 3ns6_A 84 RLFLYTM 90 (100)
T ss_dssp BCEEEES
T ss_pred EEEEEEC
Confidence 9999875
No 28
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=118.87 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..++|||+|||+++++++|+++|..|| .|..+.++.+..+|.++|||||+|.+.++|+.|++.|||..+.|+.++|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999988999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 29
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.2e-22 Score=110.34 Aligned_cols=82 Identities=27% Similarity=0.461 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++ |++..+.|+.++|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999998 99999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 85 ~a~ 87 (99)
T 2dgs_A 85 RAE 87 (99)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=9.3e-22 Score=111.57 Aligned_cols=83 Identities=27% Similarity=0.427 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcC------Cceeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD------GLVCRT 95 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~------g~~~~~ 95 (105)
+....++|||+|||+.+++++|+.+|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999998889999999999999999999999999 999999
Q ss_pred eeeeeccCC
Q 034039 96 SKDTDMLST 104 (105)
Q Consensus 96 ~~~~v~~~~ 104 (105)
+.++|..+.
T Consensus 91 ~~l~v~~a~ 99 (111)
T 1x4h_A 91 RQLKVDLAV 99 (111)
T ss_dssp CEEEEECCC
T ss_pred EEEEEEECC
Confidence 999998764
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=6.5e-22 Score=113.15 Aligned_cols=77 Identities=34% Similarity=0.590 Sum_probs=71.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+++++++|+++|..||.|..++++.+. +.++|||||+|.+.++|+.|++.|+|..+.|+.++|..++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999885 3478999999999999999999999999999999998653
No 32
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=1.2e-21 Score=106.78 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..+.|+.++|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999994 58889999999987
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 33
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=9.1e-22 Score=109.61 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee----
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEII-EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK---- 97 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~---- 97 (105)
....++|||+|||+++++++|+++|.+||.|. .+.+..++.++.++|||||+|.+.++|+.|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred eeeccCC
Q 034039 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
++|..++
T Consensus 86 l~v~~a~ 92 (99)
T 2div_A 86 FKLNYAT 92 (99)
T ss_dssp CCEEETT
T ss_pred EEEeecC
Confidence 8887664
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=7.1e-22 Score=112.00 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|..|+..|+|..+.|+.++|..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 103 a~ 104 (110)
T 1oo0_B 103 CF 104 (110)
T ss_dssp SE
T ss_pred cc
Confidence 63
No 35
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=8.4e-22 Score=109.56 Aligned_cols=81 Identities=27% Similarity=0.424 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+.++|||+|||+++++++|+++|..||.|..+.+..+.. ++.++|||||+|.+.++|+.|++.|+|..+.|+.++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567899999999999999999999999999999988765 5588999999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 83 ~~a~ 86 (98)
T 2cpf_A 83 RISE 86 (98)
T ss_dssp ECSS
T ss_pred EEcc
Confidence 8865
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=1.9e-21 Score=109.38 Aligned_cols=81 Identities=30% Similarity=0.389 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee---eeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT---SKDT 99 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~---~~~~ 99 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|+.|++.|||..+.+ +.++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999988 89999999999999999999999999999998 9999
Q ss_pred eccCC
Q 034039 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.++.
T Consensus 91 V~~a~ 95 (105)
T 2dnh_A 91 VKFAD 95 (105)
T ss_dssp EEESC
T ss_pred EEECc
Confidence 98764
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=114.92 Aligned_cols=83 Identities=34% Similarity=0.557 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|.+|++.|||..+.|+.++|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 118 ~a~ 120 (139)
T 1u6f_A 118 LAA 120 (139)
T ss_dssp ESS
T ss_pred ECC
Confidence 765
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4e-22 Score=110.44 Aligned_cols=81 Identities=33% Similarity=0.525 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+.+++++|+++|..||.|..+ .+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 9999877999999999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 83 a~ 84 (96)
T 1x5t_A 83 AF 84 (96)
T ss_dssp SC
T ss_pred ec
Confidence 64
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=8.1e-22 Score=112.97 Aligned_cols=82 Identities=43% Similarity=0.648 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+++++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 82 ~a~ 84 (116)
T 2fy1_A 82 QAK 84 (116)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=110.30 Aligned_cols=83 Identities=19% Similarity=0.396 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHc-CCceeeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD-RVTGQSRGYGFVKFASEAAAGEAIKEM-DGLVCRTSKDT 99 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~~ 99 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+ ..++.++|||||+|.+.++|+.|++.| |+..+.|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456789999999999999999999999999999999888 678999999999999999999999999 99999999999
Q ss_pred eccCC
Q 034039 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.+++
T Consensus 91 v~~a~ 95 (107)
T 2cph_A 91 LEWAD 95 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98764
No 41
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=109.46 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce-eeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV-CRTSKDT 99 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~-~~~~~~~ 99 (105)
+....++|||+|||+.+++++|+++|.. ||.|..+.+..+. ++.++|||||+|.+.++|..|++.|+|.. +.|+.++
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred eccCC
Q 034039 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|..+.
T Consensus 84 v~~a~ 88 (104)
T 2dhg_A 84 LSVAI 88 (104)
T ss_dssp CCBCC
T ss_pred EEEcc
Confidence 98764
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.2e-22 Score=111.54 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999888899999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 89 a~ 90 (102)
T 2cqb_A 89 AK 90 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 43
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=5.1e-22 Score=110.46 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|+.|++.|||..+.|+.++|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999998887788877999999999999999999999999999999999999998
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 75
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.9e-22 Score=111.26 Aligned_cols=82 Identities=40% Similarity=0.601 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999888899999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 89 a~ 90 (102)
T 1x5s_A 89 AG 90 (102)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 45
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=1.4e-21 Score=106.78 Aligned_cols=78 Identities=17% Similarity=0.521 Sum_probs=74.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|++|+ .|+|..+.|+.++|..++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 568999999999999999999999999999999999889999999999999999999999 999999999999998764
No 46
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.3e-22 Score=108.15 Aligned_cols=80 Identities=28% Similarity=0.433 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.+++...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999998754
No 47
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=113.99 Aligned_cols=82 Identities=28% Similarity=0.457 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=108.86 Aligned_cols=80 Identities=30% Similarity=0.503 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+ ++.+++||||+|.+.++|+.|++.|||..+.|+.++|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446789999999999999999999999999999999887 788999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 90 a~ 91 (103)
T 2d9p_A 90 AQ 91 (103)
T ss_dssp CS
T ss_pred ec
Confidence 64
No 49
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.2e-21 Score=110.97 Aligned_cols=83 Identities=41% Similarity=0.621 Sum_probs=77.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
......++|||+|||+.+++++|+++|..||.|..+.+..+..++.+++||||+|.+.++|++|++.+++ .+.|+.++|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3455678999999999999999999999999999999999988899999999999999999999999998 899999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.++.
T Consensus 91 ~~a~ 94 (116)
T 2cqd_A 91 NLAY 94 (116)
T ss_dssp EEST
T ss_pred EEcc
Confidence 8763
No 50
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=111.38 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
+....++|||+|||+.+++++|+++|..||.|. .+.+..+..++.++|||||+|.+.++|+.|++.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 699999877999999999999999999999999999999
Q ss_pred eeeeeeeccCC
Q 034039 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|.+++
T Consensus 91 ~g~~l~V~~a~ 101 (113)
T 2cpe_A 91 QGSKLKVSLAR 101 (113)
T ss_dssp TTEECEEECSS
T ss_pred CCCEEEEEECC
Confidence 99999999875
No 51
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=8.8e-22 Score=110.89 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee---eeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC---RTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~---~~~~~ 98 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|..|++.|+|..+ .++.+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999988899999999999999999999999999998 89999
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..+.
T Consensus 89 ~v~~a~ 94 (106)
T 2dgp_A 89 QVKPAD 94 (106)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998764
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.6e-21 Score=109.66 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+. ++.+++||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999987 68999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
++.
T Consensus 90 ~a~ 92 (114)
T 2do0_A 90 MDE 92 (114)
T ss_dssp ECS
T ss_pred Ecc
Confidence 764
No 53
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.87 E-value=4.1e-22 Score=115.13 Aligned_cols=79 Identities=23% Similarity=0.576 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||.++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|+ .|+|..+.|+.++|..++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999889999999999999999999999 899999999999998764
No 54
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=5.2e-22 Score=109.80 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|+.|++.|||..+.|+.++|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45799999999999999999999999999888888888889999999999999999999999999999999999999875
No 55
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=1.9e-22 Score=118.39 Aligned_cols=88 Identities=30% Similarity=0.449 Sum_probs=80.2
Q ss_pred cccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeee
Q 034039 17 TRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 17 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
..+..+....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 33444555678999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred eeeeccCC
Q 034039 97 KDTDMLST 104 (105)
Q Consensus 97 ~~~v~~~~ 104 (105)
.++|.+++
T Consensus 118 ~l~V~~a~ 125 (135)
T 2lea_A 118 ELRVQMAR 125 (135)
T ss_dssp CCEEEECC
T ss_pred EEEEEECC
Confidence 99998875
No 56
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-22 Score=114.01 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|+ .|+|..+.|+.++|..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999999888999999999999999999999 99999999999999865
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=106.94 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCC-ccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||+++++++|+++|.+||.|..+.+..+..++. ++|||||+|.+.++|+.|++.|||..+.|+.++|..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999988876665 8899999999999999999999999999999999865
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=5e-21 Score=107.37 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..|| |..+.+..+..++.++|||||+|.+.++|+.|+ .|+|..+.|+.++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999996 999999999888999999999999999999999 9999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 90 a~ 91 (103)
T 2dng_A 90 AE 91 (103)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.7e-21 Score=112.76 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 99 a~ 100 (126)
T 3ex7_B 99 CF 100 (126)
T ss_dssp SE
T ss_pred ec
Confidence 63
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=108.13 Aligned_cols=82 Identities=32% Similarity=0.549 Sum_probs=76.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|+.|+.. ++..+.|+.++|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999988 9999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 91 ~a~ 93 (105)
T 2dh8_A 91 PCT 93 (105)
T ss_dssp CSC
T ss_pred Ecc
Confidence 764
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=4.9e-21 Score=105.29 Aligned_cols=80 Identities=25% Similarity=0.462 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+ ++.+++||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999998874 788999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 83 a~ 84 (92)
T 2dgv_A 83 DR 84 (92)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 62
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=5.6e-21 Score=114.31 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.++.+..++.+++||||+|.+.++|+.|+..|++..+.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999886
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 5
No 63
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8e-21 Score=106.48 Aligned_cols=81 Identities=26% Similarity=0.382 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|..||.|..+.+..+..+ +++||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4456789999999999999999999999999999999988533 68999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 89 ~a~ 91 (103)
T 2cqi_A 89 WAT 91 (103)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 64
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=109.19 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|++||.|..+.++.+.. |.++|||||+|.+.++|..|+. ++|..+.|+.+.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999985 9999999999999999999998 999999999999875
No 65
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=5.7e-21 Score=110.40 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=105.70 Aligned_cols=81 Identities=27% Similarity=0.512 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+.. .+++||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999988763 388999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 89 ~a~ 91 (103)
T 2cq3_A 89 NAT 91 (103)
T ss_dssp ECC
T ss_pred Ecc
Confidence 764
No 67
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-21 Score=108.77 Aligned_cols=80 Identities=26% Similarity=0.549 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|+.|++.|+|..+.|+.++|..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999998764
No 68
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=8.6e-22 Score=114.94 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEE--EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc----eeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----VCRTS 96 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~----~~~~~ 96 (105)
....++|||+|||+++++++|+++|..||.|.. +.++.++.+|.++|||||+|.+. +|..|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999966 99999998999999999999999 999999999999 99999
Q ss_pred eeeeccCC
Q 034039 97 KDTDMLST 104 (105)
Q Consensus 97 ~~~v~~~~ 104 (105)
.++|.+++
T Consensus 99 ~l~V~~a~ 106 (131)
T 2m2b_A 99 TINVEFAK 106 (131)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99998764
No 69
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.3e-21 Score=107.45 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC-CCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+.+++++|+++|..|| |..+.+..+..+ +.++|||||+|.+.++|+.|+ .|++..+.|+.++|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999998876 899999999999999999999 9999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 91 a~ 92 (104)
T 1wi8_A 91 AD 92 (104)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.2e-21 Score=106.16 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
...++|||+|||+.+++++|+ ++|.+||.|..+.++.+..+ ++||||+|.+.++|+.|++.|||..+.|+.++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356789999999999999999 99999999999999988744 78999999999999999999999999999999
Q ss_pred eccCC
Q 034039 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|..++
T Consensus 84 V~~a~ 88 (96)
T 2dgx_A 84 VSLAT 88 (96)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98775
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=1.1e-21 Score=104.14 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+|||+|||+++++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|++|++ ++|..+.|+.++|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988889999999999999999999997 9999999999998754
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=104.27 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|..| .+..+.++.+ .+|.++|||||+|.+.++|+.|+. |+|..+.|+.++|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999998 589999999999999999999999 999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 84 a~ 85 (91)
T 2dgw_A 84 EK 85 (91)
T ss_dssp ES
T ss_pred CC
Confidence 64
No 73
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=109.36 Aligned_cols=82 Identities=27% Similarity=0.512 Sum_probs=75.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
......++|||+|||..+++++|+++|..||.|..+.+..+. +.++|||||+|.+.++|+.|++.|+|..+.|+.++|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345577899999999999999999999999999999998875 348899999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 102 ~~a~ 105 (109)
T 2err_A 102 NNAT 105 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 8875
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=4.9e-21 Score=108.57 Aligned_cols=83 Identities=33% Similarity=0.527 Sum_probs=72.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+....++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|+.|+..+ +..+.|+.++|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999876 59999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..+.
T Consensus 99 ~~a~ 102 (109)
T 2rs2_A 99 KVAF 102 (109)
T ss_dssp EECC
T ss_pred EEcc
Confidence 8764
No 75
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-20 Score=105.34 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+.. ++.+++||||+|.+.++|+.|++.||+..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445678999999999999999999999999999998854 44578999999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 95 ~a~ 97 (109)
T 1x4a_A 95 FPR 97 (109)
T ss_dssp CCC
T ss_pred Ecc
Confidence 875
No 76
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=108.80 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 22 DANSRTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
.....++|||+|||+.+ ++++|+.+|++||.|..+.++ +.+|.++|||||+|.+.++|..|+..|||..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999887 3578999999999999999999999999999999
Q ss_pred e-eeeeccCC
Q 034039 96 S-KDTDMLST 104 (105)
Q Consensus 96 ~-~~~v~~~~ 104 (105)
+ .++|..+.
T Consensus 89 ~~~l~V~~a~ 98 (105)
T 2nlw_A 89 QHTFRVNLFT 98 (105)
T ss_dssp TCEEEEECSC
T ss_pred CceEEEEEcc
Confidence 8 99998764
No 77
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=109.64 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC-CCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-VTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....++|||+|||+++++++|+++|..|| |..+.+..+. .+|.++|||||+|.+.++|..|+ .|+|..+.|+.++|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999998887 58999999999999999999999 99999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 93 ~~a~ 96 (100)
T 2j76_E 93 DVAD 96 (100)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8765
No 78
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=1.1e-20 Score=114.11 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+.+|..||.|..+.+..+..+|.++|||||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 149 a~ 150 (165)
T 1rk8_A 149 CF 150 (165)
T ss_dssp SE
T ss_pred ec
Confidence 63
No 79
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-20 Score=103.82 Aligned_cols=80 Identities=28% Similarity=0.427 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|+. ++..+.|+.++|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4566889999999999999999999999999999999998889999999999999999999998 47889999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 90 a~ 91 (103)
T 2cqg_A 90 PN 91 (103)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 80
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=8.4e-21 Score=113.61 Aligned_cols=81 Identities=30% Similarity=0.470 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+++++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|+.|++.|||..+.|+.++|..+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 148 ~ 148 (158)
T 2kn4_A 148 R 148 (158)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-20 Score=106.05 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee-------
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR------- 94 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~------- 94 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|+.|++.|||..+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 8999999999999999999999999999994
Q ss_pred -eeeeeeccC
Q 034039 95 -TSKDTDMLS 103 (105)
Q Consensus 95 -~~~~~v~~~ 103 (105)
++.+.|.++
T Consensus 100 ~~~~l~v~~a 109 (114)
T 1x5o_A 100 PTEPLLCKFS 109 (114)
T ss_dssp CSSCBEEEEC
T ss_pred CCCceeEEcc
Confidence 566777655
No 82
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=105.47 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC--ceeeeeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~v 100 (105)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|++.|++ ..+.|+.++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998864 58999999999999999998864 7899999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 87 ~~A~ 90 (105)
T 1sjq_A 87 QFSN 90 (105)
T ss_dssp CCCS
T ss_pred EEcC
Confidence 8875
No 83
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=103.94 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=67.0
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeee-ee
Q 034039 26 RTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTS-KD 98 (105)
Q Consensus 26 ~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~-~~ 98 (105)
+++|||+|||+.+ ++++|+++|++||.|..+.+. +.+|.++|||||+|.+.++|+.|++.|||..+.|+ .+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999877 34788999999999999999999999999999999 88
Q ss_pred ee
Q 034039 99 TD 100 (105)
Q Consensus 99 ~v 100 (105)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 84
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.3e-20 Score=102.29 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+..|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|++|++.||+..+.|+.|+|..++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999865 56999999999999999999999999999999998764
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=107.50 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEEecCCCC---CccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRVTG---QSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
...++|||+|||+.+++++|+ ++|.+||.|..+.+..+..++ .++|||||+|.+.++|+.|++.|||..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456789999999999999999 999999999999998887543 45699999999999999999999999999999
Q ss_pred eeeccCC
Q 034039 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
++|.+++
T Consensus 93 l~V~~a~ 99 (111)
T 2cpi_A 93 LKASLGT 99 (111)
T ss_dssp EEEESCC
T ss_pred EEEEecc
Confidence 9998865
No 86
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-21 Score=103.69 Aligned_cols=76 Identities=34% Similarity=0.591 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
++|||+|||+++++++|+++|++||.+..+.+..++.++.++|||||+|.+.++|+.|++.++ ..+.|+.++|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999998889999999999999999999999999 9999999998765
No 87
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=5.9e-21 Score=120.68 Aligned_cols=80 Identities=26% Similarity=0.412 Sum_probs=75.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..++|||+|||+++++++|+++|..|| .|..+.++.++.+++++|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999988999999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 88
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.84 E-value=4.7e-21 Score=112.54 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+....++|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|++|++ +++..+.|+.+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999985 9999999999999999999998 99999999999
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..++
T Consensus 118 ~V~~a~ 123 (136)
T 2hgl_A 118 EVFKSH 123 (136)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998764
No 89
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=106.26 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....++|||+|||+.+++++|+++|..||.|.. +.++.+ .+|+++|||||+|.+.++|+.|+.. ++..+.|+.++|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888888 5899999999999999999999987 999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..+.
T Consensus 89 ~~~~ 92 (104)
T 1wg5_A 89 FKSS 92 (104)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7653
No 90
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=8.9e-21 Score=108.91 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+....++|||+|||+++++++|+++|..||. |..+.++.+. .|+++|||||+|.+.++|++|++ +++..+.|+.+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999998 8999999988 49999999999999999999998 99999999999
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..+.
T Consensus 91 ~V~~a~ 96 (118)
T 2db1_A 91 EVFKSH 96 (118)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 997653
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-21 Score=109.12 Aligned_cols=79 Identities=32% Similarity=0.494 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++. ++..+.|+.++|..+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999988899999999999999999999987 9999999999998764
No 92
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=2.8e-20 Score=116.14 Aligned_cols=80 Identities=30% Similarity=0.448 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.+.++|||+|||+++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.|++.+++..+.|+.+++..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999988754
No 93
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=8.2e-21 Score=107.99 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....+|||+|||+++++++|+++|..|| .|..+.+.. ..++|||||+|.+.++|+.|++.|||..+.|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 898888743 2478999999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 101 ~a~ 103 (111)
T 2jvr_A 101 RDD 103 (111)
T ss_dssp ESC
T ss_pred ECC
Confidence 875
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=1.1e-21 Score=107.53 Aligned_cols=77 Identities=29% Similarity=0.534 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
++|||+|||+++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.+ |..|+..|||..+.|+.++|..+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 47999999999999999999999999999999999888999999999999999 999999999999999999998764
No 95
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.5e-20 Score=110.84 Aligned_cols=82 Identities=29% Similarity=0.480 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
.....+|||+|||+.+++++|+++|+.||.|..+.+..+..+|.++|+|||+|.+.++|..|+..|||..+.|+.++|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44677999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 76
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=106.46 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEE-ecCCCCCccceEEEEeCCHHHHHHHHHHcC--Cceeeeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVI-CDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLVCRTSKDT 99 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~~~~~~ 99 (105)
...++|||+|||+.+++++|+++|..||. |..+.+. .+..++.++|||||+|.+.++|..|++.|+ +..+.|+.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999988 777788999999999999999999999996 5899999999
Q ss_pred eccCC
Q 034039 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|..++
T Consensus 86 V~~a~ 90 (109)
T 2dis_A 86 VDWAE 90 (109)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 98764
No 97
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=108.46 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|..|++.|||..+.|+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999865 6899999998887642 67889999999999999999999999999999999
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..++
T Consensus 103 ~V~~a~ 108 (127)
T 2a3j_A 103 VITFSE 108 (127)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998875
No 98
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=107.12 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
....+|||+|||+++++++|+++|..| .|..+.++.+. +|+++|||||+|.+.++|++|+ .+|+..+.|+.+.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 89999999987 5999999999999999999999 79999999999999765
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 99
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-21 Score=111.24 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|+.|+. |||..+.|+.+.|..
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999875555565699999999999999999999998 999999999999986
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 100
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=102.66 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee-----eee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT-----SKD 98 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~-----~~~ 98 (105)
...++|||+|||+++++++|+++|..||.|..+.+..+ +||||+|.+.++|+.|++.|||..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999998765 799999999999999999999999999 999
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..+.
T Consensus 86 ~V~~a~ 91 (108)
T 1x4c_A 86 RVKVDG 91 (108)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 998764
No 101
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.83 E-value=5.3e-20 Score=110.87 Aligned_cols=100 Identities=24% Similarity=0.400 Sum_probs=85.2
Q ss_pred CCCceecccccccccccc--CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHH
Q 034039 4 LNGSVRFSHSVRFTRLLS--DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a 81 (105)
+++..+.++.+....+.. .....++|||+|||+.+++++|+++|.+||.|..+.+..+..+|.++|+|||+|.+.++|
T Consensus 70 ~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 70 FDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp GTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred hCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 456666555544333222 234468999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHcCCceeeeeeeeeccC
Q 034039 82 GEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 82 ~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.+|++.|||..+.|+.++|..+
T Consensus 150 ~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 150 DQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999876
No 102
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=103.49 Aligned_cols=77 Identities=21% Similarity=0.152 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce--eeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV--CRTSKDT 99 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~~~~~~ 99 (105)
...++.+|||+|||+.+++++|+++|.+||.|..+.+.. .+|+|||+|.+.++|.+|++.|++.. +.|+.+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345678999999999999999999999999999998874 35899999999999999999999876 7799999
Q ss_pred eccCC
Q 034039 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.+++
T Consensus 91 V~~S~ 95 (100)
T 3r27_A 91 VNYST 95 (100)
T ss_dssp EEECS
T ss_pred EEecc
Confidence 99875
No 103
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=105.87 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|..||.+ .+.++.++ +++++|||||+|.+.++|++|+ .+|+..+.++.++|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 3456899999999999999999999999965 99999998 8999999999999999999999 5799999999999986
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 89 ~~ 90 (102)
T 1wez_A 89 NS 90 (102)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=107.74 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
....++|||+|||+.+++++|+++|..||.+ ..+.++.+. +|.++|||||+|.+.++|+.|++. ++..+.|+.+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 889999998 999999999999999999999977 9999999999997
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 90 ~a~ 92 (114)
T 2cpy_A 90 VVT 92 (114)
T ss_dssp EEC
T ss_pred ECC
Confidence 653
No 105
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=99.46 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHc-CCceeeeeeeeec
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~~v~ 101 (105)
....++|||+|||+.+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|+.|++.| +|..+.|+.++|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999998753 589999999999999999999 9999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=9.3e-20 Score=101.33 Aligned_cols=75 Identities=21% Similarity=0.404 Sum_probs=68.9
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 22 DANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....++|||+|||+ .+++++|+++|..||.|..+.+. +|||||+|.+.++|..|++.|+|..+.|+.++|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445678999999998 99999999999999999999882 589999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 90 ~~a~ 93 (97)
T 2xnq_A 90 EVSS 93 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 9875
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=102.83 Aligned_cols=79 Identities=28% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.| .++.+ .++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999987 45555 488899999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 87 ~a~ 89 (101)
T 2fc9_A 87 LQG 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 864
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=7.4e-20 Score=103.58 Aligned_cols=75 Identities=31% Similarity=0.528 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|.+||.|..+.+. +|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999886 5899999999999999999999999999999999
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 99 ~a~ 101 (108)
T 2jvo_A 99 YSK 101 (108)
T ss_dssp SCS
T ss_pred Eec
Confidence 875
No 109
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=99.25 Aligned_cols=74 Identities=28% Similarity=0.495 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|.+||.|..+.+. ++||||+|.+.++|+.|++.|+|..+.|+.++|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999886 47999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 77 a~ 78 (90)
T 2dnq_A 77 SK 78 (90)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 110
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=101.44 Aligned_cols=80 Identities=35% Similarity=0.501 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..|+ .+.++.+..++.+++||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999874 56777787789999999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 88 ~a~ 90 (102)
T 2fc8_A 88 WAK 90 (102)
T ss_dssp ECC
T ss_pred Eec
Confidence 875
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=101.51 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|. +.+..+ .++|||||+|.+.++|+.|++.|||..+.|+.++|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999986 555543 477999999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 90 ~a~ 92 (97)
T 2e5j_A 90 LAR 92 (97)
T ss_dssp ECC
T ss_pred EcC
Confidence 765
No 112
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=6.2e-21 Score=101.24 Aligned_cols=75 Identities=29% Similarity=0.487 Sum_probs=70.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+|||+|||+++++++|+++|++||.+..+.+..+..++.++|||||+|.+.++|+.|++. ++..+.|+.++|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999888899999999999999999999974 899999999998754
No 113
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=1.3e-19 Score=103.27 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+.+|..||.|..+.+..+ +.++|||||+|.+.++|..|+..|||..+.|+.++|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45679999999999999999999999999999998864 446899999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 83 ~ 83 (115)
T 3lqv_A 83 N 83 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 114
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=9.2e-21 Score=107.07 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=74.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+....++|||+|||+++++++|+++|..||. |..+.++.+.. |.++|||||+|.+.++|+.|+. +++..+.|+.+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999988 88999998885 9999999999999999999998 99999999999
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..+.
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 987653
No 115
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=1.7e-19 Score=107.91 Aligned_cols=79 Identities=32% Similarity=0.530 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|..|++.|+|..+.|+.++|..+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5789999999999999999999999999999999998899999999999999999999999999999999999987653
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=2.4e-20 Score=103.44 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
+..+.++|||+|||+.+++++|+ ++|.+||.|..+.+.. +|.++|||||+|.+.++|..|++.|+|..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999998763 5667899999999999999999999999999999
Q ss_pred eeeccCC
Q 034039 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
++|..++
T Consensus 81 l~v~~a~ 87 (97)
T 1nu4_A 81 MRIQYAK 87 (97)
T ss_dssp CEEEECS
T ss_pred EEEEEcc
Confidence 9998764
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-21 Score=108.12 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999884332222222778899999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 102 a~ 103 (115)
T 2cpx_A 102 GK 103 (115)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=1.6e-19 Score=102.32 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+. +++++|+++|.+||.|..+.+ +++||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34579999999999 999999999999999999988 458999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 119
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=1.1e-19 Score=112.88 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||..+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..+.|+.++|..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 203 ~ 203 (216)
T 2qfj_A 203 V 203 (216)
T ss_dssp S
T ss_pred c
Confidence 4
No 120
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=99.82 Aligned_cols=76 Identities=24% Similarity=0.404 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee--eeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR--TSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~--~~~~~v 100 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+ ++||||+|.+.++|+.|++.|||..+. |+.++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 445689999999999999999999999999999988643 579999999999999999999999999 999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 88 ~~a~ 91 (97)
T 1why_A 88 DFAK 91 (97)
T ss_dssp EECC
T ss_pred EECC
Confidence 8765
No 121
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=102.16 Aligned_cols=77 Identities=21% Similarity=0.506 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+.+|..||.|..+.+..+ ++||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999998765 5899999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 95 ~a~ 97 (109)
T 1x4g_A 95 WGK 97 (109)
T ss_dssp CCC
T ss_pred ecC
Confidence 875
No 122
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.1e-20 Score=106.65 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=70.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCC----HHH----HHHHHH--HcCCce
Q 034039 27 TKLFIGGL----SYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS----EAA----AGEAIK--EMDGLV 92 (105)
Q Consensus 27 ~~l~v~~l----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~--~l~g~~ 92 (105)
..|||+|| |+.+++.+|+.+|+.||+|..+.++.|+.||.++|||||+|.+ ..+ |..|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 323 788888 789999
Q ss_pred eeeeeeeeccCC
Q 034039 93 CRTSKDTDMLST 104 (105)
Q Consensus 93 ~~~~~~~v~~~~ 104 (105)
++|+.++|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 123
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=104.13 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc--eeeeeeeee
Q 034039 24 NSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL--VCRTSKDTD 100 (105)
Q Consensus 24 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~--~~~~~~~~v 100 (105)
.+.++|||+|||+ .+++++|+++|.+||.|..+.++.++ +||||+|++.++|..|++.|++. .+.|+.+.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 99999999999999999999987543 79999999999999999999864 599999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 87 ~~a~ 90 (102)
T 1x4d_A 87 HLSQ 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8765
No 124
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=1.3e-19 Score=108.75 Aligned_cols=100 Identities=23% Similarity=0.421 Sum_probs=83.9
Q ss_pred CCCceeccccccccc--cccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHH
Q 034039 4 LNGSVRFSHSVRFTR--LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a 81 (105)
+++..+..+.+.... +........+|||+|||..+++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|
T Consensus 65 l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp HTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 455555555444322 223345678999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHcCCceeee--eeeeeccC
Q 034039 82 GEAIKEMDGLVCRT--SKDTDMLS 103 (105)
Q Consensus 82 ~~a~~~l~g~~~~~--~~~~v~~~ 103 (105)
..|++.|+|..+.| +.++|.++
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999977 88888764
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-19 Score=100.97 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||.++++++|+++|..||.|..+.+.. ++|||||+|.+.++|..|+..|+|..+.|+.++|..
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999998872 468999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 98 a~ 99 (101)
T 2la4_A 98 GK 99 (101)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-21 Score=107.19 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|..||.+.. .++.+..++.++|||||+|.+.++|+.|++ |+|..+.|+.++|..
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999998866 455555578899999999999999999998 999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 92 a~ 93 (101)
T 1fj7_A 92 PK 93 (101)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 127
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=8.9e-20 Score=111.32 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|+.|++.|+|..+.|+.++|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346799999999999999999999999999999999988 8999999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 165 ~ 165 (177)
T 2f3j_A 165 A 165 (177)
T ss_dssp S
T ss_pred c
Confidence 4
No 128
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=101.42 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCc--eeeeeeeeec
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL--VCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~--~~~~~~~~v~ 101 (105)
.+.++|||+|||+.+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|..|++.|++. .+.|+.+.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999988653 589999999999999999988764 5899999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 87 ~a~ 89 (104)
T 1wex_A 87 YST 89 (104)
T ss_dssp ECS
T ss_pred Ecc
Confidence 765
No 129
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=99.51 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHc--CCceeeeeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~g~~~~~~~~~v 100 (105)
..+.++|||+|||+.+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|..|++.| ++..+.|+.+.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999988754 589999999999999999977 467899999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 86 ~~a~ 89 (101)
T 2cq1_A 86 QYSN 89 (101)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8765
No 130
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=104.09 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC--ceeeeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LVCRTSKDT 99 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~ 99 (105)
...+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|++.++|.+|++.|++ ..+.|+.++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999998764 58999999999999999999884 689999999
Q ss_pred eccCC
Q 034039 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.+++
T Consensus 101 V~~a~ 105 (119)
T 2ad9_A 101 IQFSN 105 (119)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 98765
No 131
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=1.9e-19 Score=107.95 Aligned_cols=80 Identities=31% Similarity=0.443 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
+.++|||+|||+++++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|..|++.|+|..+.|+.++|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46789999999999999999999999999999999988889999999999999999999999999999999999988653
No 132
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=2.3e-19 Score=122.33 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|..+|..||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 180 ~ 180 (437)
T 3pgw_S 180 R 180 (437)
T ss_pred C
Confidence 5
No 133
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-21 Score=111.67 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
....++|||+|||+.+++++|+++|..||.|.. +.+..++.++.++|||||+|.+.++|+.|++.|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345779999999999999999999999999988 888888778999999999999999999999999999999
Q ss_pred eeeeeeccCC
Q 034039 95 TSKDTDMLST 104 (105)
Q Consensus 95 ~~~~~v~~~~ 104 (105)
|+.++|..++
T Consensus 84 g~~l~V~~a~ 93 (116)
T 2lcw_A 84 GNPIKVSFAT 93 (116)
Confidence 9999998764
No 134
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=100.53 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+ ++||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345679999999999999999999999999999988754 58999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 86 a~ 87 (99)
T 2cpj_A 86 AC 87 (99)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 135
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=3.2e-19 Score=109.51 Aligned_cols=81 Identities=27% Similarity=0.460 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|..|++.|+|..+.|+.++|..+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 192 ~ 192 (198)
T 2yh0_A 192 S 192 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=98.01 Aligned_cols=75 Identities=28% Similarity=0.451 Sum_probs=68.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|..||.|..+.+. ++||||+|.+.++|+.|++.|||..+.|+.++|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999885 2499999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 78 ~a~ 80 (92)
T 2dgt_A 78 LST 80 (92)
T ss_dssp ESS
T ss_pred Ecc
Confidence 864
No 137
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=105.93 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCe----EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEI----IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
....+|||+|||+++++++|+++|..||.| ..+.++.+. +|+++|||||+|.+.++|++|++. ++..+.++.+.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999875 688888885 899999999999999999999976 99999999998
Q ss_pred eccC
Q 034039 100 DMLS 103 (105)
Q Consensus 100 v~~~ 103 (105)
|..+
T Consensus 99 V~~a 102 (123)
T 2dha_A 99 LFRS 102 (123)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 8764
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-18 Score=97.15 Aligned_cols=74 Identities=31% Similarity=0.459 Sum_probs=67.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
....++|||+|||+.+++++|+++|..| |.|..+.+. ++||||+|.+.++|+.|+..|||..+.|+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 889888763 479999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 84 ~~a~ 87 (99)
T 2cpd_A 84 TLAK 87 (99)
T ss_dssp ECCC
T ss_pred EECC
Confidence 8875
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=2.5e-19 Score=107.20 Aligned_cols=99 Identities=30% Similarity=0.469 Sum_probs=81.3
Q ss_pred CCCceeccccccccc--cccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHH
Q 034039 4 LNGSVRFSHSVRFTR--LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a 81 (105)
+++..+..+.+.... +........+|||+|||+.+++++|+++|..||.+..+.+..+..+|.++|+|||+|.+.++|
T Consensus 64 l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 64 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp HTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 455555555444322 222334668999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHcCCceeeeee--eeecc
Q 034039 82 GEAIKEMDGLVCRTSK--DTDML 102 (105)
Q Consensus 82 ~~a~~~l~g~~~~~~~--~~v~~ 102 (105)
..|++.|||..+.|+. ++|..
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEE
T ss_pred HHHHHHhcCCccCCCccceEEEe
Confidence 9999999999999976 55543
No 140
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=97.09 Aligned_cols=74 Identities=30% Similarity=0.479 Sum_probs=68.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+.+|..||.|..+.+.. +||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999998862 4899999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 78 a~ 79 (90)
T 2dnp_A 78 ST 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=7.8e-20 Score=102.09 Aligned_cols=73 Identities=29% Similarity=0.451 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|+.|++.|+|..+.|+.++|..++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 47999999999999999999999999999998865 56899999999999999999999999999999998764
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=6.1e-20 Score=102.70 Aligned_cols=75 Identities=31% Similarity=0.532 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|+.|++ ++..+.|+.+.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 346799999999999999999999999999999999998 99999999999999999999998 7777777776654
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=3.2e-19 Score=106.02 Aligned_cols=77 Identities=30% Similarity=0.469 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.+..+ ++|||||+|.+.++|..|+..|||..+.|+.++|..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999998765 468999999999999999999999999999999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 145 a~ 146 (150)
T 2i2y_A 145 SN 146 (150)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 144
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=103.09 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|.+||.|..+.+.. .++||||+|.+.++|+.|++.|||..+.|+.+.|..++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998763 45799999999999999999999999999999998653
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=96.38 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+++++++|+.+|..||.|..+ ..+..++. ||||+|.+.++|++|+. |+|..+.|+.++|..+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 55555554 99999999999999999 9999999999999865
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=8.6e-20 Score=101.02 Aligned_cols=77 Identities=26% Similarity=0.369 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+ ..++.++|||||+|.+.++|..|+..|+|..+.|+.++|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988666 23788999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 88 a~ 89 (96)
T 1fjc_A 88 TG 89 (96)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 147
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=6.4e-19 Score=98.73 Aligned_cols=73 Identities=26% Similarity=0.448 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+.+. ++||||+|.+.++|+.|++.|+|..+.|+.++|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456799999999999999999999999999999875 359999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 81 ~ 81 (103)
T 2dgu_A 81 K 81 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.5e-19 Score=99.27 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=67.2
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 23 ANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
..+.++|||+|||+ .+++++|+.+|.+||.|..+.+. +|||||+|.+.++|+.|++.|+|..+.|+.++|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999884 5899999999999999999999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 79 ~a~ 81 (96)
T 2kvi_A 79 VSS 81 (96)
T ss_dssp EEE
T ss_pred EcC
Confidence 763
No 149
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=102.97 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC--ceeeeeee
Q 034039 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~ 98 (105)
...+.++|||+|||++ +++++|+++|.+||.|..+.+.. .+|||||+|.+.++|+.|++.|++ ..+.|+.+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3456789999999998 99999999999999999998864 358999999999999999998864 56999999
Q ss_pred eeccCC
Q 034039 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
.|.+++
T Consensus 95 ~V~~a~ 100 (112)
T 1x4f_A 95 KVDLSE 100 (112)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 998764
No 150
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=98.55 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+++++++|+.+|..||.|..+ .+..++.++ .|||+|.+.++|+.|+..|||..+.|+.++|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999 477766443 399999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 89 a~ 90 (96)
T 2e44_A 89 IP 90 (96)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=4.1e-19 Score=110.87 Aligned_cols=78 Identities=33% Similarity=0.576 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
...+|||+|||+.+++++|+++|..||.|..+.++.+. +.++|||||+|.+.++|+.|++.|||..+.|+.|+|..++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999885 3478999999999999999999999999999999998764
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=9e-19 Score=107.37 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+++++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|..|++. ++..+.|+.+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999988899999999999999999999966 8999999999887
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 88 ~~ 89 (196)
T 1l3k_A 88 RA 89 (196)
T ss_dssp EC
T ss_pred cc
Confidence 65
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=5.3e-20 Score=108.38 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|.+|| +..+.++.++ +++++|||||+|.+.++|++|+ .+|+..+.++.++|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999 6699999887 5999999999999999999999 8999999999999986
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 120 a~ 121 (139)
T 2hgn_A 120 NS 121 (139)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.9e-19 Score=104.36 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeE--EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....+|||+|||+++++++|+++|..| .+. .+.++.++. |+++|||||+|.+.++|++|++. ++..+.|+.+.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3456789999999999999999999999 566 899998884 99999999999999999999974 779999999998
Q ss_pred ccC
Q 034039 101 MLS 103 (105)
Q Consensus 101 ~~~ 103 (105)
..+
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 155
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=7.1e-20 Score=108.09 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEE------EEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV------KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~------~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
....++|||+|||+.+++++|+.+|..||.|..+ .+... .+|.++|||||+|.+.++|..|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999999988653 11111 2688999999999999999999999999999999
Q ss_pred eeeeccCC
Q 034039 97 KDTDMLST 104 (105)
Q Consensus 97 ~~~v~~~~ 104 (105)
.++|.+++
T Consensus 121 ~l~V~~a~ 128 (143)
T 3egn_A 121 PMVVQFAR 128 (143)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 99998874
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=2.8e-19 Score=102.19 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=61.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
...++|||+|||+++++++|+++|.+||.|..+.+..+ +||||+|.+.++|+.|++.|||..+.|+.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 45689999999999999999999999999999988654 799999999999999999999999999983
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=5.2e-19 Score=96.58 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|.+| .|..+.+. .++|||||+|.+.++|+.|++.|||..+.|+.++|..++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99888874 467999999999999999999999999999999998764
No 158
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=1.2e-18 Score=104.98 Aligned_cols=78 Identities=32% Similarity=0.439 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee---eeeeeec
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR---TSKDTDM 101 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---~~~~~v~ 101 (105)
..++|||+|||+.+++++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|..|++.|||..+. ++.++|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56799999999999999999999999999999999886 7899999999999999999999999998876 4889887
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
++
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 159
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=97.39 Aligned_cols=74 Identities=24% Similarity=0.354 Sum_probs=65.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC-ceeeeeeeeec
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-LVCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g-~~~~~~~~~v~ 101 (105)
...++|||+|||+++++++|+++|.+||. +..+.+. +++||||+|.+.++|+.|++.||| ..+.|+.++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45679999999999999999999999999 6555542 458999999999999999999999 99999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 79 ~a~ 81 (93)
T 2cqh_A 79 YSV 81 (93)
T ss_dssp ECC
T ss_pred Ecc
Confidence 764
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=2e-18 Score=103.75 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee--eeeeec
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT--SKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~--~~~~v~ 101 (105)
....+|||+||++.+++++|+++|++||.|.++.+.... .++||||+|.+.++|+.|++.|||..+.+ +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 445679999999999999999999999999999986443 46899999999999999999999999965 899998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 120 ~Ak 122 (164)
T 1sjr_A 120 FSK 122 (164)
T ss_dssp ECS
T ss_pred Eec
Confidence 765
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.3e-18 Score=103.93 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=71.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
++|||+|||+++++++|+++|+.||.|..+.+..+. +++++|||||+|.+.++|..|++.|+|..+.|+.+++..+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 479999999999999999999999999999999887 6889999999999999999999999999999999998765
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=2.2e-18 Score=107.02 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||+++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|..|++.|+|..+.|+.+.|..+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4679999999999999999999999999999999998888999999999999999999999999999999999998654
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=99.54 Aligned_cols=68 Identities=26% Similarity=0.506 Sum_probs=60.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHc---CCce
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEM---DGLV 92 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l---~g~~ 92 (105)
...++|||+|||+.+++++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|+.|++.| +|..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 4568899999999999999999999999999 777777656 789999999999999999999988 6653
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=97.86 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee-----ee
Q 034039 23 ANSRTKLFI--GGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC-----RT 95 (105)
Q Consensus 23 ~~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~-----~~ 95 (105)
..+..+||| +||++++++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+ .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 78999999999999999999999987753 258999999999999999999999998 67
Q ss_pred eeeeeccC
Q 034039 96 SKDTDMLS 103 (105)
Q Consensus 96 ~~~~v~~~ 103 (105)
+.+.|.++
T Consensus 96 ~~l~v~~a 103 (114)
T 2cq2_A 96 ITLYLNFV 103 (114)
T ss_dssp EECEEEEE
T ss_pred cEEEEEec
Confidence 77777654
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=8.9e-18 Score=97.60 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHcCCceeee--eeeee
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLVCRT--SKDTD 100 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~~--~~~~v 100 (105)
...-.|||+||++.+++++|+++|++||.|.++.+.... +++ |||+|.+.++|+.|++.|||..+.+ +.+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345578899999999999999999999999999876542 467 9999999999999999999999988 88998
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 101 ~~ak 104 (130)
T 3zzy_A 101 DFSK 104 (130)
T ss_dssp EECS
T ss_pred EecC
Confidence 8765
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=3.7e-18 Score=106.26 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=69.1
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLS-YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+||| +.+++++|+++|..||.|.++.+..+ .+|||||+|.+.++|+.|++.|||..+.|+.|+|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 79999999999999999999998754 3689999999999999999999999999999999876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 4
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-17 Score=91.88 Aligned_cols=74 Identities=23% Similarity=0.424 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|+ .+++++|+++|.+||.|..+.+. .++|||||+|.+.++|+.|+..|+|..+.|+.++|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999884 3568999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 84 a~ 85 (97)
T 1x5p_A 84 AR 85 (97)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=8.5e-18 Score=103.01 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=73.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|.+|+.. +|..+.|+.+.|..+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 457999999999999999999999999999999999988899999999999999999999976 7999999999998653
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=4.3e-18 Score=92.45 Aligned_cols=71 Identities=21% Similarity=0.507 Sum_probs=64.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
...++|||+|||+++++++|+++|..| | .+..+.+..+ +|||||+|.+.++|+.|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346789999999999999999999999 8 8999887644 589999999999999999 999999
Q ss_pred eeeeeeeec
Q 034039 93 CRTSKDTDM 101 (105)
Q Consensus 93 ~~~~~~~v~ 101 (105)
+.|+.++|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999885
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=7.3e-18 Score=108.81 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=84.5
Q ss_pred cCCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHH
Q 034039 3 WLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 82 (105)
.+++..+.++.+.... ....++|||+|||+.+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|.
T Consensus 76 ~l~~~~~~g~~i~v~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 76 AFHQSRLRERELSVQL----QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp HHTTCEETTEECEEEE----CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred HcCCCeeCCeEEEEEe----cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 3456666555554432 235679999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHcCCceeeeeeeeeccCC
Q 034039 83 EAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 83 ~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.|+..|+|..+.|+.+.|..+.
T Consensus 152 ~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 152 RAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHhCCCEeCCcEEEEEECC
Confidence 9999999999999999987653
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=1.4e-18 Score=104.12 Aligned_cols=79 Identities=29% Similarity=0.487 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
...+|||+|||+.+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|++ ++|..+.|+.+.|..+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45789999999999999999999999999999999988789999999999999999999997 89999999999998764
No 172
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=91.56 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=61.8
Q ss_pred CceEEEcCCCCCCCHHH----HHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 26 RTKLFIGGLSYDTNETV----LKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+.|||+|||..+++++ |+++|..|| .|..+ ++ |+|||.|.+.++|.+|++.|+|..+.|+.++|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 33499999999999987 568999995 99887 33 89999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 79 ~~A~ 82 (96)
T 2diu_A 79 SFTP 82 (96)
T ss_dssp ESSC
T ss_pred EecC
Confidence 9875
No 173
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.75 E-value=1.2e-17 Score=103.10 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=70.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+.+++++|+++|.+||.|..+.++.+. ++.++|||||+|.+.++|+.|+..++ ..+.|+.+.|+.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 4789999999999999999999999999999999887 68899999999999999999997665 58999999998654
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=9.6e-18 Score=101.00 Aligned_cols=70 Identities=31% Similarity=0.478 Sum_probs=65.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC--CccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
..++|||+|||+++++++|+++|.+||.|..+.+..+..++ .++|||||+|.+.++|+.|++.|+|..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 46789999999999999999999999999999999998665 79999999999999999999999998775
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=1.5e-17 Score=107.38 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 24 NSRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+.+ ++++|+++|..||.|..+.+..+. +|.++|+|||+|.+.++|..|+..|+|..+.|+.++|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 466899999999995 999999999999999999999887 899999999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 261 a~ 262 (284)
T 3smz_A 261 CA 262 (284)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 176
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=8.1e-18 Score=101.64 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+ ..++.++|||||+|.+.++|..|++.|+|..+.|+.++|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999988766 347889999999999999999999999999999999999877
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 172 ~ 172 (175)
T 1fje_B 172 G 172 (175)
T ss_dssp S
T ss_pred C
Confidence 4
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.8e-17 Score=94.96 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=64.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHcCCceeee--eeeeeccC
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLVCRT--SKDTDMLS 103 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~~--~~~~v~~~ 103 (105)
-.|||+||++.+++++|+++|++||.|..+.+... .|| |||+|.+.++|..|++.|||..+.| +.++|..+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999988642 176 9999999999999999999999987 57888876
Q ss_pred C
Q 034039 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 5
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=8.6e-18 Score=100.69 Aligned_cols=77 Identities=32% Similarity=0.622 Sum_probs=68.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+.++|||+|||+++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|+.|++. +..+.|+.+.+..+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 357899999999999999999999999999999999988899999999999999999999985 45677777766543
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=4.9e-17 Score=91.55 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHhccCCeEEEEEEecCCC-CCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 24 NSRTKLFIGGLSY-----DTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
.++++|+|.|+.. +-++++|++.|++||.|..+.++.++.+ +.++|++||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999863 2368899999999999999999987643 578999999999999999999999999999999
Q ss_pred eeeccCC
Q 034039 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
+.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998764
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=2.1e-17 Score=90.47 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=59.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee--eeeeee
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR--TSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~--~~~~~v 100 (105)
....++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+ .+++..+. |+.+.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEE
Confidence 356789999999999999999999999999999998764 6799999999999988 35666655 777777
Q ss_pred ccC
Q 034039 101 MLS 103 (105)
Q Consensus 101 ~~~ 103 (105)
..+
T Consensus 79 ~~a 81 (89)
T 3d2w_A 79 SNA 81 (89)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=2.4e-17 Score=106.30 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
+....++|||+|||+.+++++|+ ++|..||.|..+.+.. +++++|||||+|.+.++|..|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44568899999999999999966 8999999999998764 6778999999999999999999999999999999
Q ss_pred eeeccCC
Q 034039 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
++|..++
T Consensus 82 l~v~~a~ 88 (282)
T 3pgw_A 82 MRIQYAK 88 (282)
T ss_pred EEEEEec
Confidence 9998653
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.73 E-value=8.4e-18 Score=108.88 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCC-CCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 24 NSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRV-TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...++|||+|||+. +++++|+++|..||.|..+.+..+.. +|.++|||||+|.+.++|..|+ .|||..+.|+.+.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 35689999999999 99999999999999999999988774 4889999999999999999999 999999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 287 ~a~ 289 (292)
T 2ghp_A 287 LAD 289 (292)
T ss_dssp ECC
T ss_pred Eec
Confidence 875
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=3.7e-17 Score=102.95 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034039 22 DANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....++|||+|||+ .+++++|+++|..||.|..+.+..+. +|||||+|.+.++|+.|++.|+|..+.|+.+.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998764 579999999999999999999999999999999
Q ss_pred ccCC
Q 034039 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 105 ~~a~ 108 (229)
T 2adc_A 105 TLSK 108 (229)
T ss_dssp ECCS
T ss_pred EEec
Confidence 8764
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=3.8e-17 Score=94.10 Aligned_cols=74 Identities=23% Similarity=0.424 Sum_probs=66.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|+ ++++++|+++|..||.|..+.+. .++|||||+|.+.++|+.|++.|+|..+.|+.++|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999995 69999999999999999999885 3568999999999999999999999999999999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 108 a~ 109 (121)
T 2bz2_A 108 AR 109 (121)
T ss_dssp CC
T ss_pred eC
Confidence 64
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=1.4e-16 Score=102.76 Aligned_cols=77 Identities=26% Similarity=0.368 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee-eeeeeecc
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-TSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-~~~~~v~~ 102 (105)
...++|||+|||..+++++|+++|..||.|..+.+..++ +|||||+|.+.++|..|++.|||..+. |+.|+|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999988553 479999999999999999999999999 99999998
Q ss_pred CCC
Q 034039 103 STG 105 (105)
Q Consensus 103 ~~~ 105 (105)
++.
T Consensus 280 akk 282 (282)
T 3pgw_A 280 AKK 282 (282)
T ss_pred ecC
Confidence 763
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=7.4e-17 Score=103.37 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=78.0
Q ss_pred CCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHH
Q 034039 4 LNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (105)
+++..+.++.+.... .....+|||+|||+.+++++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|..
T Consensus 78 l~g~~i~g~~l~v~~----a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 78 LDGTILKSRPLRIRF----ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp HTTCEETTEECEEEE----CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHH
T ss_pred cCCcEECCceeEeee----cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHH
Confidence 456666555544433 2346799999999999999999999999999999999995 89999999999999999999
Q ss_pred HHHHcCCc-eee---eeeeeeccC
Q 034039 84 AIKEMDGL-VCR---TSKDTDMLS 103 (105)
Q Consensus 84 a~~~l~g~-~~~---~~~~~v~~~ 103 (105)
|+..|++. .+. ++.+.|..+
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEEC
T ss_pred HHHHhcCCeEEecCCCceEEEeec
Confidence 99999654 433 888887654
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-17 Score=89.39 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=59.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce--eeeeeeeec
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV--CRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~~~~~~v~ 101 (105)
...++|||+|||+.+++++|+++|..||.|..+.+..+ ++|||||+|.+.++|+++ ++.. +.++.++|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 34689999999999999999999999999999988654 578999999999999754 4444 467777776
Q ss_pred cC
Q 034039 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 74 ~a 75 (88)
T 1wf0_A 74 NA 75 (88)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=1.2e-16 Score=101.39 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=68.9
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 23 ANSRTKLFIGGLSYDT---------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
....++|||+||+..+ ++++|+.+|.+||.|..+.++. .+|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 7999999999999999999875 358999999999999999999999999
Q ss_pred ------------eeeeeeeccCC
Q 034039 94 ------------RTSKDTDMLST 104 (105)
Q Consensus 94 ------------~~~~~~v~~~~ 104 (105)
.|+.|.|..++
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC
T ss_pred eccccccccccCCCCEEEEEEcc
Confidence 89999998764
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=3.2e-16 Score=100.42 Aligned_cols=76 Identities=33% Similarity=0.490 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|..||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.++|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345679999999999999999999999999999988543 58999999999999999999999999999999986
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 93 a~ 94 (261)
T 3sde_A 93 AT 94 (261)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.4e-17 Score=100.62 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=68.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+++++++|+++|..||.+..+ ++.+..++.++|||||+|.+.++|..|+ .|+|..+.|+.++|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 45678899999999999999999999999866442 2233346778999999999999999999 599999999999998
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 87 ~~~ 89 (175)
T 1fje_B 87 KPK 89 (175)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=7.5e-17 Score=99.20 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=68.1
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 26 RTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+ .+++++|+++|..||.|..+.+..+. +|||||+|.+.++|..|++.|+|..+.|+.++|..+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999887654 5799999999999999999999999999999998653
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=2.8e-16 Score=101.73 Aligned_cols=94 Identities=12% Similarity=0.195 Sum_probs=75.1
Q ss_pred CCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHH
Q 034039 4 LNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 82 (105)
+++..+..+.+.... ...++|||+|||+.+++++|+++|..|| .|..+.+..+. .|.++|||||+|.+.++|.
T Consensus 100 ~~~~~~~g~~i~v~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 100 KTHKVVGQNEIIVSH-----LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp TTTCEETTEECEEEE-----CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHH
T ss_pred hCCcEeCCcEEEEEE-----CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHH
Confidence 455555555444322 3578999999999999999999999999 99999998877 4788999999999999999
Q ss_pred HHHHHcCCceeeeeeeeeccC
Q 034039 83 EAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 83 ~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.|+..|+|..+.|+.+.|..+
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp HHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHhCCCEeCCcEEEEEEC
Confidence 999999999999999998865
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=1.6e-16 Score=98.86 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=63.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCe--EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI--IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
+.++|||+|||+.+++++|+++|++||.| ..+.+..+. +..+|+|||+|.+.++|..|+..|||..+.|+.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 35689999999999999999999999998 788877654 455699999999999999999999999999885
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=4.7e-16 Score=97.89 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee-eeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-TSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-~~~~~v~~ 102 (105)
+.++|||+|||+.+++++|+++|..|| .|..+.+..+ .+|+|||+|.+.++|..|++.|+|..+. |+.++|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468899999999999999999999999 9999988542 3579999999999999999999999999 99999988
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 225 a~ 226 (229)
T 2adc_A 225 SK 226 (229)
T ss_dssp CS
T ss_pred ec
Confidence 75
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.66 E-value=5e-17 Score=91.34 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034039 31 IGGLSYDTNETVLKDAF------------GQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 31 v~~l~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+.||++.+++++|++.| ++||.|..+.+..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777777666 999999999998876 57899999999999999999999999999999999
Q ss_pred eeccC
Q 034039 99 TDMLS 103 (105)
Q Consensus 99 ~v~~~ 103 (105)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-15 Score=85.62 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC
Q 034039 22 DANSRTKLFIGGLSYDTN-----------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
......+|+|.||..... +++|+++|.+||.|..+.+ .+. .++|||||+|.+.++|+.|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999954432 5789999999999999965 443 2789999999999999999999999
Q ss_pred ceeeeeeeeeccCC
Q 034039 91 LVCRTSKDTDMLST 104 (105)
Q Consensus 91 ~~~~~~~~~v~~~~ 104 (105)
..+.|+.++|.++.
T Consensus 87 ~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 87 RWFGGRQITAQAWD 100 (112)
T ss_dssp CEETTEECEEEECC
T ss_pred CEECCcEEEEEEeC
Confidence 99999999998764
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=93.78 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee-eeeeeecc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-TSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-~~~~~v~~ 102 (105)
+.++|||+|||..+++++|+++|..|| .|..+.+..+ .+|+|||+|.+.++|..|+..|||..+. |+.++|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 9999988543 2589999999999999999999999999 99999987
Q ss_pred CC
Q 034039 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 194 a~ 195 (198)
T 1qm9_A 194 SK 195 (198)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=2.4e-15 Score=90.32 Aligned_cols=73 Identities=19% Similarity=0.463 Sum_probs=64.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
..++|||+|||+++++++|+++|+.| | .+..+.+.. ++|||||+|.+.++|+.|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35789999999999999999999999 6 677776543 4689999999999999999 9999999
Q ss_pred eeeeeeeccCC
Q 034039 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|..+.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999987653
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=2.1e-15 Score=84.85 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=66.4
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHHhccCCeEEEEEEecCCC--CCccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 25 SRTKLFIGGL--SYDTN--------ETVLKDAFGQHGEIIEVKVICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 25 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
+++.|.+.|+ |.... .++|++.|++||.|..+.++.+..+ +.++|++||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667888887 32332 3689999999999999999887643 3578999999999999999999999999
Q ss_pred eeeeeeeeccC
Q 034039 93 CRTSKDTDMLS 103 (105)
Q Consensus 93 ~~~~~~~v~~~ 103 (105)
+.|+.++|.++
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999764
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=4e-15 Score=91.16 Aligned_cols=73 Identities=19% Similarity=0.469 Sum_probs=63.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
..++|||+|||+++++++|+++|..| | .+..+.+. .++|||||+|.+.++|+.|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 36789999999999999999999999 5 56666543 35689999999999999999 9999999
Q ss_pred eeeeeeeccCC
Q 034039 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|..+.
T Consensus 76 ~g~~i~v~~~~ 86 (198)
T 2yh0_A 76 QGQSLKIRRPH 86 (198)
T ss_dssp TTEEEEEECCC
T ss_pred cCceEEEeCCC
Confidence 99999998653
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=8.4e-15 Score=83.93 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=67.6
Q ss_pred CCceEEEcCCCC--C---CCHHHHHHHHhccCCeEEEEEEecCC----CCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 25 SRTKLFIGGLSY--D---TNETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 25 ~~~~l~v~~l~~--~---~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
++++|++.|+-. . --+++|++.|.+||.|..+.++.+.. ++.++|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899998832 1 23588999999999999999988753 35678999999999999999999999999999
Q ss_pred eeeeeccC
Q 034039 96 SKDTDMLS 103 (105)
Q Consensus 96 ~~~~v~~~ 103 (105)
+.++|.++
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999864
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=3.7e-14 Score=94.07 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=58.2
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 23 ANSRTKLFIGG--LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 23 ~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
+.+..+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45677999998 578899999999999999998876642 4689999999999999999999999884
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-13 Score=76.68 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034039 36 YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 36 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..+++++|+++|.+||.|..+.++ +.++|||||+|.+.++|+.|++.+++ +.++.++|..++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 468999999999999999999987 35789999999999999999998665 568888888764
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.7e-13 Score=76.69 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=66.4
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCC-HHHHHHHHHHcC--Cceeeeee
Q 034039 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAIKEMD--GLVCRTSK 97 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--g~~~~~~~ 97 (105)
.......|||+||++. ++.++|+++|..||+|..+.+..+.. .|||.|.+ ..+|..|++.++ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3457889999999999 99999999999999999999977652 59999999 899999999995 67788887
Q ss_pred eeeccCC
Q 034039 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
+++.+..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7776543
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=2.2e-13 Score=77.57 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=61.0
Q ss_pred CCceEEEcCCCCCC----------CHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 25 SRTKLFIGGLSYDT----------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 25 ~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
+++.|.+.|+=..- .+++|++.|++||.|..+.+..+. .+|++||+|.+.++|.+|++.|||..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45567777763221 224789999999999999886543 5799999999999999999999999999
Q ss_pred eeeeeeccC
Q 034039 95 TSKDTDMLS 103 (105)
Q Consensus 95 ~~~~~v~~~ 103 (105)
|+.++|.++
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999999864
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-12 Score=69.89 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=59.7
Q ss_pred CCCceEEEcCCCC----CCCH----HHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 24 NSRTKLFIGGLSY----DTNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 24 ~~~~~l~v~~l~~----~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
++..+|+|.-.+. +... .+|.+.|.+||.+..++++.++ +||+|.+.++|.+|+. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4466787875552 2333 5688999999999999998764 8999999999999997 99999999
Q ss_pred eeeeeccCC
Q 034039 96 SKDTDMLST 104 (105)
Q Consensus 96 ~~~~v~~~~ 104 (105)
+.++|.+++
T Consensus 76 r~LkV~lkt 84 (91)
T 2dnr_A 76 RTITIALKS 84 (91)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEeCC
Confidence 999999875
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.18 E-value=8.6e-11 Score=73.48 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=58.3
Q ss_pred CCHHHHHHHHhccCCeEEEEEEecC----CCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034039 38 TNETVLKDAFGQHGEIIEVKVICDR----VTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 38 ~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
-.+++|.+.|.+||.|..+.+..+. .++.++|++||+|.+.++|.+|++.|||..+.|+.+.+.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 3457899999999999999988554 34578999999999999999999999999999999998865
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=7.2e-11 Score=64.43 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=60.1
Q ss_pred CCCCceEEEcCCCCC------CCH---HHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCcee
Q 034039 23 ANSRTKLFIGGLSYD------TNE---TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~------~~~---~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
.++..+|+|.-+++. ..+ .+|.+.|..||.+..++++.++ +||+|.+.++|.+|+. |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345778999877642 232 4588899999999999998764 9999999999999997 999999
Q ss_pred eeeeeeeccC
Q 034039 94 RTSKDTDMLS 103 (105)
Q Consensus 94 ~~~~~~v~~~ 103 (105)
.|+.++|.+.
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=7.1e-08 Score=53.87 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc-----CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQH-----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
..++|-+-+||..++...++.+...+ |.+..+.+..+. +-|+|+|.+...|-+|.=.|+|..+.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 45678888999999999999999999 999999887665 4599999999999999889999999999998
Q ss_pred ec
Q 034039 100 DM 101 (105)
Q Consensus 100 v~ 101 (105)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 74
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.29 E-value=8.4e-06 Score=44.58 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=47.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcC
Q 034039 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
....+.+++ ++|+.+...+|.++|+.||.+ .+.++-|. .|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345667777 999999999999999999943 45555553 69999999999999998763
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.24 E-value=1.5e-05 Score=43.31 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=56.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHcCCceeeee
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
++|.|++||+..+++++.+.+.....+....++....+.+ ...-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4688999999999999999999888777666655443322 224589999999999999999999987544
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=1.1e-05 Score=44.71 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=59.1
Q ss_pred CCceEEEcCCCCCCCH-----HHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034039 25 SRTKLFIGGLSYDTNE-----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
-.++|+|.||+.++-. +.++.+|..|+++.......+- .-..|.|.+.++|.+|-..|++..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3568999999886522 4678899999988776665443 2367999999999999999999999999999
Q ss_pred eccC
Q 034039 100 DMLS 103 (105)
Q Consensus 100 v~~~ 103 (105)
+..+
T Consensus 78 ~YFg 81 (104)
T 1wey_A 78 LYFA 81 (104)
T ss_dssp EECC
T ss_pred EEec
Confidence 8764
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.88 E-value=2.8e-05 Score=42.61 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=45.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcC
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
.+.+++ ++|+.+...+|..+|+.|| -..+.++-|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455666 9999999999999999998 4556666553 69999999999999998764
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.00054 Score=37.82 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=45.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc---c--CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 034039 24 NSRTKLFIGGLSYDTNETVLKDAFGQ---H--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~---~--g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 87 (105)
....+|.|.|||+.+.++.|.-+|+. - |.+..++... +-|+|+|.+...|+..++.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 34578999999999999999999976 2 4677766532 3589999999999999955
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.70 E-value=7.5e-05 Score=40.87 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=50.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHcCCceeeee
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
+-+|.|+.||+..|++++.+.+...-......+.....+.+ ...-|||.|.+.++.....+.++|..+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 44789999999999999888777655543333322211111 123589999999999999999999987544
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.00044 Score=39.21 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=49.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeee
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
..+-|.|-++|+.. ...+...|.+||.|.+.... + ...+-.|.|.++.+|++|+ ..||..+.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL-~kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKAL-SKDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHH-HhCCeEecC
Confidence 45678888999885 45677889999999877652 1 1247889999999999999 558888864
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.00 E-value=0.00048 Score=47.52 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=41.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 85 (105)
.++|+|. .|...++.+|.+.|++||+|..+.+..+. | .|+.|+|.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHH
Confidence 4789997 79999999999999999999998876543 2 69999999999988765
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.47 E-value=0.0033 Score=36.71 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.4
Q ss_pred EEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC
Q 034039 56 VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 56 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
+.+..+. ..++||+||+|.+.++|+.|++.+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 3455553 35889999999999999999988764
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.35 E-value=0.0012 Score=38.42 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=34.4
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHc-CCceeeeeeeeeccCC
Q 034039 64 TGQSRGYGFVKFASEAAAGEAIKEM-DGLVCRTSKDTDMLST 104 (105)
Q Consensus 64 ~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~~v~~~~ 104 (105)
....+|+++++|.+.++|++|++.+ ||..++| .+.+..+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 3457799999999999999999999 9999999 88777653
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.69 E-value=0.015 Score=33.46 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEec--------CCCCC-----ccceEEEEeCCHHHHHHHHHHcCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICD--------RVTGQ-----SRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~--------~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
....|.|-+.|++.... +...|++||.|.. ...... +...+ ...+-.|+|.++.+|.+|+ ..||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 34567777998766544 5678999998744 211100 00000 2346789999999999999 6688
Q ss_pred ceeeeeeeeec
Q 034039 91 LVCRTSKDTDM 101 (105)
Q Consensus 91 ~~~~~~~~~v~ 101 (105)
..+.|.-+-|.
T Consensus 84 ~ii~G~mIGV~ 94 (132)
T 3p3d_A 84 AVFNGVLLGVI 94 (132)
T ss_dssp CEETTEECEEE
T ss_pred eEeCcEEEEEE
Confidence 88877644443
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.67 E-value=0.19 Score=35.13 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCC
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
....++++ +|+.+...+|.+.|+.||.+ .+.++-+ ..+||.|.+.+.|..+++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 34566665 88899999999999999954 4444322 3599999999999999998863
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.08 E-value=6.2 Score=19.72 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=39.8
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhccC-----CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034039 28 KLFIG-GLSYDTNETVLKDAFGQHG-----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 28 ~l~v~-~l~~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+++|. +-...+...+|...+..-+ .|-.+.+. + .|.||+.. ...+..+++.|++..+.|+.+++.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEEC-TTCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEEC-HHHHHHHHHHhccccCcCceEEEE
Confidence 34553 2233456667777766433 34555552 2 36788876 456778889999999999999887
Q ss_pred cCC
Q 034039 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.11 E-value=43 Score=17.86 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=43.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHc
Q 034039 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 88 (105)
..+-+-|-|+|..+-..++.-..+..|--..|...- |-+.+.|.+..+...|+++|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 356677889999988888776667777666666542 34899999999999999875
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.22 E-value=38 Score=17.70 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHcCCc
Q 034039 67 SRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
..||-||++....+...+++...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 5699999999998888888777664
No 225
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=33.11 E-value=61 Score=17.51 Aligned_cols=48 Identities=8% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhc-cC---CeEEE-EEEecCCCCCccceEEEEeCCHHHHHHH
Q 034039 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEA 84 (105)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a 84 (105)
..++..++++-+.. |+ ++..+ .+......|++.|||.| |.+.+.|...
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777776654 44 23333 35555566777788866 6777766553
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.91 E-value=72 Score=20.19 Aligned_cols=32 Identities=13% Similarity=0.360 Sum_probs=24.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEE
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVI 59 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 59 (105)
.-+.|+|+|...+..-+.+++.. ..+....+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45788999999999999998877 556555443
No 227
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=29.88 E-value=71 Score=17.29 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHhc-cC---CeEEE-EEEecCCCCCccceEEEEeCCHHHHHH
Q 034039 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (105)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (105)
..++..++++-+.. |+ ++..+ .+......|++.|||.| |.+.+.|..
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777776654 44 23333 35556666777788866 677776654
No 228
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=29.46 E-value=78 Score=19.36 Aligned_cols=28 Identities=4% Similarity=0.076 Sum_probs=24.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHcCCceee
Q 034039 67 SRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
-+||-||+=.+......|++.+.+....
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 6799999999999999999988886544
No 229
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=29.41 E-value=88 Score=18.57 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=21.3
Q ss_pred eEEEEeCCHHHHHHHHHHcCCceeeee
Q 034039 70 YGFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 70 ~~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
..++-|.++++|++..+...|..+.-.
T Consensus 112 ~~l~pFa~k~dAe~Fa~~~GG~Vl~f~ 138 (175)
T 2hpu_A 112 PEAVPFSSRDEAAAFVLAEGGQVLALA 138 (175)
T ss_dssp CCEEEESCHHHHHHHHHHTEEEEEEGG
T ss_pred CcccCcCCHHHHHHHHHHcCCEEEEHH
Confidence 569999999999999988666554433
No 230
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.33 E-value=94 Score=18.55 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=29.4
Q ss_pred CCHHHHHHHH--hccCCeEEEEEEecCCCCCccceEEEEeCC-HHHHHHHH
Q 034039 38 TNETVLKDAF--GQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAI 85 (105)
Q Consensus 38 ~~~~~l~~~f--~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~ 85 (105)
.....|.+.| ..|.++.... ..+. ..+.|+++|.|.+ ..-...|+
T Consensus 33 ~s~~~l~~~~~~~~F~p~kv~~-l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTRVRP-LWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSEEEE-EECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCceeEe-cccC--CCCceeEEEEecCChHHHHHHH
Confidence 3456788866 8898876443 3433 3378899999984 44444444
No 231
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=28.92 E-value=76 Score=17.33 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHhc-cC---CeEEE-EEEecCCCCCccceEEEEeCCHHHHHH
Q 034039 37 DTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (105)
Q Consensus 37 ~~~~~~l~~~f~~-~g---~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (105)
.++..++++-+.. |+ ++..+ .+......|++.|||.| |.+.+.|..
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567777766543 44 22333 34455556667788866 677777665
No 232
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.88 E-value=12 Score=20.44 Aligned_cols=62 Identities=21% Similarity=0.126 Sum_probs=35.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceE--EEEeCCHHHHHHHHHHcCCce
Q 034039 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYG--FVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~--fv~f~~~~~a~~a~~~l~g~~ 92 (105)
..+|-+.... ..+++..+..+.+ +..+.+.....+|+. .|. +=.|.+.++|..|+..|....
T Consensus 25 ~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 4455554433 4455666666665 333444333223433 232 347889999999998887543
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.69 E-value=42 Score=18.24 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=21.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 67 SRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
.+||-||+=.+......|++.+.+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57999999999999999997765543
No 234
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.50 E-value=8.3 Score=22.34 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=7.2
Q ss_pred ccceEEEEeC
Q 034039 67 SRGYGFVKFA 76 (105)
Q Consensus 67 ~~g~~fv~f~ 76 (105)
.+||+||.-.
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 3578998754
No 235
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=25.59 E-value=1.1e+02 Score=17.99 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=26.5
Q ss_pred CCHHHHHHHHhccCCe---EEEEEEecCCCCCccceEEEE
Q 034039 38 TNETVLKDAFGQHGEI---IEVKVICDRVTGQSRGYGFVK 74 (105)
Q Consensus 38 ~~~~~l~~~f~~~g~v---~~~~~~~~~~~~~~~g~~fv~ 74 (105)
.++++|.++-...|.+ .+..+..+..+|..+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 4788999998888866 455556553478888777653
No 236
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.41 E-value=31 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEe
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVIC 60 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 60 (105)
....|+|+|..++..-|.+++.....+..+.+..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3567899999999999999887655555555443
No 237
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.36 E-value=69 Score=17.17 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHhc-cC---CeEEE-EEEecCCCCCccceEEEEeCCHHHHH
Q 034039 37 DTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAG 82 (105)
Q Consensus 37 ~~~~~~l~~~f~~-~g---~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~ 82 (105)
.++..++++-+.. |+ ++..+ .+......|++.|||.| |.+.+.|.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 4566777665543 33 22222 12233344556677765 45444443
No 238
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.37 E-value=41 Score=18.23 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=7.6
Q ss_pred HHHHHHHhccC
Q 034039 41 TVLKDAFGQHG 51 (105)
Q Consensus 41 ~~l~~~f~~~g 51 (105)
..|+++|.+||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45788888887
No 239
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.91 E-value=93 Score=17.68 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHcCCc
Q 034039 67 SRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
..||-||++....+...+++...|.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 4689999999988888888777764
No 240
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.56 E-value=1.1e+02 Score=18.95 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=21.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 034039 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEV 56 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 56 (105)
.+.|+|+|..++...+.+++.....+...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 57789999999988887777643334443
No 241
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.56 E-value=32 Score=21.54 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=24.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEEe
Q 034039 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVIC 60 (105)
Q Consensus 29 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 60 (105)
..|+|+|..++...|.+++.....+....+..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 37899999999999999888665565554443
No 242
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.02 E-value=85 Score=14.73 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=39.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHcCCce
Q 034039 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
.++.|.++.-..-...+...+.. ..+..+.+.... +-+.|.|.+......+++.+ |+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~~-Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEAA-GYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHHT-TCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHHc-CCc
Confidence 46788888877777888888888 778777764332 34567776566666667553 443
Done!