BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034040
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 19 RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
RLQKEL+ Q +PP G + V +++ +WI+++ GAPGTLY E F+L F YP
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 85
Query: 76 EAPQVIFLPP-APLHPHIYSNGHICLGIAS 104
++PQV+F P+HPH+YSNGHICL I +
Sbjct: 86 DSPQVMFTGENIPVHPHVYSNGHICLSILT 115
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A+ R+QKEL + NPP V N++ WI++ G T+YANE +++++ FP++YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ P V FL P H H+YSNG ICL +
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSV 108
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A+ R+QKEL + NPP V +N++ WI++ G T+YANE ++L++ FP+ YP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ P V FL P H H+YSNG ICL +
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSL 94
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKH--KVTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
+SK A RL KEL + + P G K +N+ W + G P T YA+ F +++F
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P+ YP+ P++ F P+ LHP+IY NG +C+ I
Sbjct: 61 PKDYPLSPPKLTFT-PSILHPNIYPNGEVCISI 92
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 7 PSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFEL 65
PS A RLQ+EL+ ++ G +DNL +W+ ++GA GT+Y + ++L
Sbjct: 22 PSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKL 81
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++FP YP AP V FL P HP++ + G+I L I
Sbjct: 82 SLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNISLDI 117
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTD------NLQRWIIEVNGAPGTLYANETFELQ 66
S + RLQ+E +W+ + P GF K +L W + + G P T + ++L
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 67 VDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ FPE YP P+ F PP HP++Y +G +CL I
Sbjct: 68 MAFPEEYPTRPPKCRFTPPL-FHPNVYPSGTVCLSI 102
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S + RLQ+E +W+ + P GF K + +LQ+W + G GT +A +
Sbjct: 2 SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ V++P YP + P+V F P HP++Y +G ICL I
Sbjct: 62 ITVEYPNEYPSKPPKVKF-PAGFYHPNVYPSGTICLSI 98
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP Y
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P++ F HP+I SNG ICL I
Sbjct: 79 PFKPPKIAFTTKI-YHPNINSNGSICLDI 106
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 14 KIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72
++A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP
Sbjct: 6 EMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD 65
Query: 73 YPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
YP + P++ F HP+I SNG ICL I
Sbjct: 66 YPFKPPKIAFTTKI-YHPNINSNGSICLDI 94
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP Y
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P++ F HP+I SNG ICL I
Sbjct: 63 PFKPPKIAFTTKI-YHPNINSNGSICLDI 90
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S + RLQ+E +W+ + P GF K + +LQ+W + G GT +A + +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
V++P YP + P+V F P HP++Y +G ICL I
Sbjct: 61 TVEYPNEYPSKPPKVKF-PAGFYHPNVYPSGTICLSI 96
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ Q +PP G ++N + +W + G GT + + TF+L ++F
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
E YP + P V FL HP++Y++G ICL I
Sbjct: 61 EEYPNKPPTVRFLSKM-FHPNVYADGSICLDI 91
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
+ +A R+QKEL E Q +PP V D++ W + G + Y F L V FP
Sbjct: 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPV 61
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
YP +AP+V F+ HP+I NG ICL I
Sbjct: 62 DYPFKAPRVTFMTKV-YHPNINKNGVICLDI 91
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
A+ +A R+QKEL + Q +PPA V D+L W + G + Y F L + F
Sbjct: 2 AMGSMALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHF 61
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P YP + P+V F HP+I SNG ICL I
Sbjct: 62 PTDYPFKPPKVAFTTKI-YHPNINSNGSICLDI 93
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 20 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
L+++L E NP GF + D+ L RW + + G P TLY F+ + FP+ YP+
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 78 PQVIFLPPAPLHPHIYSNGHICLGI 102
P++ F+ HP++ NG +C+ I
Sbjct: 82 PKMKFITEI-WHPNVDKNGDVCISI 105
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 5 SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
+ PSR+ RL ++ + Q +PPAG T DN+ W + G T + + TF
Sbjct: 2 TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 53
Query: 64 ELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+L ++F E YP + P V F+ HP++Y++G ICL I
Sbjct: 54 KLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDI 91
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 5 SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
+ PSR+ RL ++ + Q +PPAG T DN+ W + G T + + TF
Sbjct: 5 TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 56
Query: 64 ELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+L ++F E YP + P V F+ HP++Y++G ICL I
Sbjct: 57 KLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDI 94
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA + V D+L W + G P + Y F L V FP Y
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P++ F HP+I SNG I L I
Sbjct: 67 PFKPPKIAFTTKI-YHPNINSNGSIKLDI 94
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
S +A R+QKEL + +PPA V D+L W + G P + Y F L + FP
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
YP + P+V F HP+I SNG ICL I
Sbjct: 62 DYPFKPPKVAFTTRI-YHPNINSNGSICLDI 91
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ Q +PPAG DN + W + G T + TF+L + F
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
E YP + P V F+ HP+IY++G ICL I
Sbjct: 61 EDYPNKPPTVRFVSRM-FHPNIYADGSICLDI 91
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 5 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
L++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 65 LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 101
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 2 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
L++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 98
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 1 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
L++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 61 LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 97
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 99
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ + + P G + DN+ W + G T Y + TF L ++F
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
E YP + P V FL HP++Y+NG ICL I
Sbjct: 61 EEYPNKPPHVKFLSEM-FHPNVYANGEICLDI 91
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 99
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP +Y +G +CL I
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPQVYPSGTVCLSI 99
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 96
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 99
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++Y +G +CL I
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 98
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
+S R+ KEL + + +PP V D+L W + G + YA F L + FP YP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ P++ F HP+I +NG+ICL I
Sbjct: 63 FKPPKISFTTKI-YHPNINANGNICLDI 89
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 17 SNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
++RL++EL PP G + D + ++ G T Y F+L+V PE YP
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 76 EAPQVIFLPPAPLHPHIYSNGHICLGIASF 105
E PQ+ FL P HP+I S G ICL +
Sbjct: 66 EPPQIRFLTPI-YHPNIDSAGRICLDVLKL 94
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 19 RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE PP G V +N + + I +NG GT Y T++L++ PE YPME
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78 PQVIFLPPAPLHPHIYSNGHICLGI 102
P+V FL HP+I G ICL I
Sbjct: 65 PKVRFLTKI-YHPNIDKLGRICLDI 88
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 19 RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE PP G V +N + + I +NG GT Y T++L++ PE YPME
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78 PQVIFLPPAPLHPHIYSNGHICLGI 102
P+V FL HP+I G ICL I
Sbjct: 65 PKVRFLTKI-YHPNIDKLGRICLDI 88
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 16 ASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
++ R+QKEL E ++PP AG K DN+ W + G PG++Y F L + F
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSP 60
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
YP + P+V F H +I S G ICL I
Sbjct: 61 DYPFKPPKVTFRTRI-YHCNINSQGVICLDI 90
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 17 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
S RLQ+EL ++ G DNL +W+ ++G T+Y + ++L ++FP YP
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 76 EAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ P V F P HP++ +G+ICL I
Sbjct: 71 KPPVVKFTTPC-WHPNVDQSGNICLDI 96
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
A+ +A R+ KEL + +PPA V D++ W + G + Y F L + F
Sbjct: 2 AMGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 61
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P YP + P+V F HP+I SNG ICL I
Sbjct: 62 PTDYPFKPPKVAFTTRI-YHPNINSNGSICLDI 93
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ +EL + +PP+ V D+L W + G + YA F L + FP Y
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 61 PFKPPKVNFTTRI-YHPNINSNGSICLDI 88
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQV 67
L ++ R+QKEL + ++PP AG K DN+ W + G PG++Y F L +
Sbjct: 45 LLSTSAKRIQKELADITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDI 101
Query: 68 DFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
F YP + P+V F H +I S G ICL I
Sbjct: 102 TFTPEYPFKPPKVTFRTRI-YHCNINSQGVICLDI 135
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++ +G +CL I
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVAPSGTVCLSI 99
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
++ +A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 8 MNSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
YP + P+V F HP+I SNG ICL I
Sbjct: 68 TDYPFKPPKVAFTTRI-YHPNINSNGSICLDI 98
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 20 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
L+K+L + + P GF + D+ + +W + V G P TLY F+ +DFP YP +
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 78 PQVIFLPPAPLHPHIYSNGHICLGI 102
P++ F+ HP+I G++C+ I
Sbjct: 68 PKMKFISEI-WHPNIDKEGNVCISI 91
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++Y +G + L I
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVSLSI 96
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
++ +A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 8 MNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
YP + P+V F HP+I SNG ICL I
Sbjct: 68 TDYPFKPPKVAFTTRI-YHPNINSNGSICLDI 98
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 69 PFKPPKVAFTTRI-YHPNINSNGSICLDI 96
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
++ F + YP P+ F PP HP++Y +G + L I
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVXLSI 96
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ P+V F HP+I SNG ICL I
Sbjct: 64 FKPPKVAFTTRI-YHPNINSNGSICLDI 90
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ P+V F HP+I SNG ICL I
Sbjct: 61 FKPPKVAFTTRI-YHPNINSNGSICLDI 87
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 79 PFKPPKVAFTTRI-YHPNINSNGSICLDI 106
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDI 90
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDI 90
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDI 90
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 61 PFKPPKVAFTTRI-YHPNINSNGSICLDI 88
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG ICL I
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDI 90
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP+I G ICL
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRICL 88
Query: 101 GI 102
+
Sbjct: 89 DV 90
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP+I G ICL
Sbjct: 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRICL 90
Query: 101 GI 102
+
Sbjct: 91 DV 92
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICL 100
P + P+V F HP+I SNG ICL
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICL 88
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 23 ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
EL Q P GF+ + D +L W + + G P T Y F+ ++ FP YP P
Sbjct: 15 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAF 74
Query: 81 IFLPPAPLHPHIYSNGHICLGI 102
FL HP+IY G +C+ I
Sbjct: 75 RFLTKM-WHPNIYETGDVCISI 95
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 23 ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
EL Q P GF+ + D +L W + + G P T Y F+ ++ FP YP P
Sbjct: 12 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAF 71
Query: 81 IFLPPAPLHPHIYSNGHICLGI 102
FL HP+IY G +C+ I
Sbjct: 72 RFLTKM-WHPNIYETGDVCISI 92
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
AS R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ P+V F HP+I SNG I L I
Sbjct: 61 FKPPKVAFTTRI-YHPNINSNGSISLDI 87
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PP V D++ W + G + Y+ F L + FP YP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ P+V F HP+I S G ICL I
Sbjct: 82 FKPPKVNFTTKI-YHPNINSQGAICLDI 108
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG I L I
Sbjct: 61 PFKPPKVAFTTRI-YHPNINSNGSISLDI 88
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 4 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG I L I
Sbjct: 64 PFKPPKVAFTTRI-YHPNINSNGSISLDI 91
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA + V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP I SNG I L I
Sbjct: 61 PFKPPKVAFTTRI-YHPAINSNGSISLDI 88
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG I L I
Sbjct: 79 PFKPPKVAFTTRI-YHPNINSNGSIXLDI 106
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P + P+V F HP+I SNG I L I
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSISLDI 90
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP+I G I L
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRISL 88
Query: 101 GI 102
+
Sbjct: 89 DV 90
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 1 MTSSSAPSRKALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGT 56
MT R +++ IA R++ KE+++ + K + D N E+ G P T
Sbjct: 7 MTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT 66
Query: 57 LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
Y ++L++ PE YP P+V F+ HP+I S G ICL I
Sbjct: 67 PYEGGRYQLEIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 112
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPE 71
S +AS R+ KEL + Q PP ++ +D+ + P Y + F L++ FP
Sbjct: 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPP 61
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
YP + P + F HP++ NG ICL I S
Sbjct: 62 EYPFKPPMIKFTTKI-YHPNVDENGQICLPIIS 93
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP I G I L
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPAIDRLGRISL 88
Query: 101 GI 102
+
Sbjct: 89 DV 90
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPEHY 73
+AS R+ KEL + Q PP ++ +D+ + P Y + F L++ FP Y
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
P + P + F HP++ NG ICL I S
Sbjct: 61 PFKPPMIKFTTKI-YHPNVDENGQICLPIIS 90
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 77 APQVIFLPPAPLHPHIYSNGHICLGI 102
AP+V F+ HP++ G ICL I
Sbjct: 71 APKVRFMTKI-YHPNVDKLGRICLDI 95
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 77 APQVIFLPPAPLHPHIYSNGHICLGI 102
AP+V F+ HP++ G ICL I
Sbjct: 68 APKVRFMTKI-YHPNVDKLGRICLDI 92
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 77 APQVIFLPPAPLHPHIYSNGHICLGI 102
AP+V F+ HP++ G ICL I
Sbjct: 64 APKVRFMTKI-YHPNVDKLGRICLDI 88
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 77 APQVIFLPPAPLHPHIYSNGHICLGI 102
AP+V F+ HP++ G ICL I
Sbjct: 66 APKVRFMTKI-YHPNVDKLGRICLDI 90
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 77 APQVIFLPPAPLHPHIYSNGHICLGI 102
AP+V F+ HP++ G ICL I
Sbjct: 69 APKVRFMTKI-YHPNVDKLGRICLDI 93
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVD 68
S AS RL KEL E + F++ D NL W +I + P Y F ++++
Sbjct: 2 SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEIN 58
Query: 69 FPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
FP YP + P++ F HP+I G +CL + S
Sbjct: 59 FPAEYPFKPPKITFKTKI-YHPNIDEKGQVCLPVIS 93
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
+L +W ++G T Y N F + ++ P YPM P++ F+ LH ++ S G ICL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 101 GI 102
I
Sbjct: 106 NI 107
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVDFPE 71
AS RL KEL E + F++ D NL W +I + P Y F ++++FP
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEINFPA 59
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
YP + P++ F HP+I G +CL + S
Sbjct: 60 EYPFKPPKITFKTKI-YHPNIDEKGQVCLPVIS 91
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 6 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 65
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P YP+ P++ F HP+IY +G +C+ I
Sbjct: 66 PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISI 97
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 4 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 63
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P YP+ P++ F HP+IY +G +C+ I
Sbjct: 64 PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISI 95
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 3 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 62
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P YP+ P++ F HP+IY +G +C+ I
Sbjct: 63 PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISI 94
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
+L +W ++G T Y N F + ++ P YPM P++ F+ LH ++ S G ICL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 101 GI 102
I
Sbjct: 106 NI 107
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
+L +W ++G T Y N F + ++ P YPM P++ F+ LH ++ S G ICL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 101 GI 102
I
Sbjct: 106 NI 107
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 11 ALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQ 66
A++ IA R++ KE+++ + K + D N E+ G P T Y ++L+
Sbjct: 4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 63
Query: 67 VDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
+ PE YP P+V F+ HP+I S G ICL I
Sbjct: 64 IKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 99
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
A RL E + +NPP G +N W + G T + F + FP Y
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
P+ P++ F HP+IY +G +C+ I
Sbjct: 64 PLSPPKMRFTCEM-FHPNIYPDGRVCISI 91
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 36 KHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI- 92
KH+VT L ++++ G GT Y ++++VD P+ YP ++P + F+ HP+I
Sbjct: 41 KHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKI-FHPNID 99
Query: 93 YSNGHICLGI 102
++G +CL +
Sbjct: 100 EASGTVCLDV 109
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 12 LSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQV 67
++ IA R++ KE+++ + K + D N E+ G P T Y ++L++
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 68 DFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
PE YP P+V F+ HP+I S G ICL I
Sbjct: 114 KIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 148
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 11 ALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQ 66
+++ IA R++ KE+++ + K + D N E+ G P T Y ++L+
Sbjct: 2 SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 67 VDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
+ PE YP P+V F+ HP+I S G ICL I
Sbjct: 62 IKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 97
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 11 ALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQ 66
++ IA R++ KE+++ + K + D N E+ G P T Y ++L+
Sbjct: 1 GMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 60
Query: 67 VDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
+ PE YP P+V F+ HP+I S G ICL I
Sbjct: 61 IKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 96
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 40 TDNLQRWIIEVNGAPGTLY--ANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGH 97
TD + WI++V ++Y A T++L V F + YP E P V F+ P P + G
Sbjct: 46 TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV-YSPLVTGEGG 104
Query: 98 IC 99
IC
Sbjct: 105 IC 106
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 22 KELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
KE+ +PP G K ++L + + G GT YA F +++ + +P P+
Sbjct: 20 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 79
Query: 81 IFLPPAPLHPHIYSNGHICLGI 102
FL HP++ +NG IC+ +
Sbjct: 80 YFLTKI-FHPNVGANGEICVNV 100
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
RLQKEL + + + D N W+ + G GT Y F L + P YP
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 78 PQVIFLPPAPLHPHIYS-NGHICLGI 102
P++ F+ HP+I S G ICL +
Sbjct: 87 PKIKFVTKI-WHPNISSQTGAICLDV 111
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 50 VNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPA----PLHPHIYSNGHICLGI 102
+ G T YAN FE V FP+ YP P V +P++Y++G +CL I
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSI 172
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 19 RLQKELVEWQVNPPAGFKHKVT-----DNLQRWIIEVNGAPGTLYAN-ETFELQVDFPEH 72
RL+++L + PP + +T D Q +EV P Y N + +DF E
Sbjct: 33 RLKRDLDSLDL-PPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEV 91
Query: 73 YPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
YP+E P+V+ L HP+I G++CL I
Sbjct: 92 YPIEPPKVVCLKKI-FHPNIDLKGNVCLNI 120
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 39 VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGH 97
V ++ RW + G GT Y F L + P YP P++ F+ HP+I S G
Sbjct: 70 VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKI-WHPNISSQTGA 128
Query: 98 ICLGI 102
ICL I
Sbjct: 129 ICLDI 133
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 9 RKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQV 67
R ++ A L ++ + + N G K V++++ W +E+ G +++ F+L +
Sbjct: 17 RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76
Query: 68 DFPEHYPMEAPQVIFLPPAPLHPHI 92
F Y P V F+ P HP++
Sbjct: 77 HFTSEYNYAPPVVKFI-TIPFHPNV 100
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 3 SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGT-LYANE 61
S++A + L KE+ E + N P K D + ++ P Y
Sbjct: 2 SATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGG 61
Query: 62 TFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
F+ + + P+ Y M P+V L HP+I G ICL +
Sbjct: 62 KFQFETEVPDAYNMVPPKVKCLTKI-WHPNITETGEICLSL 101
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 33 AGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91
AG+ ++ + + Q + + +G GT Y +++ V P+ YP +P + F+ LHP+
Sbjct: 17 AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKL-LHPN 75
Query: 92 I-YSNGHICLGI 102
+ ++G +CL +
Sbjct: 76 VDEASGSVCLDV 87
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 52 GAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
G PGT Y F + ++ P YP + P++ F HP+I S G ICL I
Sbjct: 41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQF-DTKVYHPNISSVTGAICLDI 91
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 52 GAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
G PGT Y F + ++ P YP + P++ F HP+I S G ICL I
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV-YHPNISSVTGAICLDI 90
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGT-LYANETFELQVDFPEHY 73
+ L KE+ E + N P K D + ++ P Y F+ + + P+ Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
M P+V L HP+I G ICL +
Sbjct: 74 NMVPPKVKCLTKI-WHPNITETGEICLSL 101
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93
G + L RW + G P T+Y N + L+++ YP P V F+ ++
Sbjct: 49 GLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNS 108
Query: 94 SNGHI 98
SNG +
Sbjct: 109 SNGVV 113
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93
G + L RW + G P T+Y N + L+++ YP P V F+ ++
Sbjct: 59 GLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNS 118
Query: 94 SNGHI 98
SNG +
Sbjct: 119 SNGVV 123
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93
G + L RW + G P T+Y N + L+++ YP P V F+ ++
Sbjct: 31 GLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNS 90
Query: 94 SNGHI 98
SNG +
Sbjct: 91 SNGVV 95
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 19 RLQKELVEWQ---VNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL EL Q V+ F + D+ L W + G PGT++ N + L + ++Y
Sbjct: 29 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
Query: 74 PMEAPQVIF 82
P P V F
Sbjct: 89 PDSPPTVKF 97
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGT---LYA 59
GF V NL+ W+IEVNGAP LYA
Sbjct: 319 GFDFMVDKNLKVWLIEVNGAPACAQKLYA 347
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 19 RLQKELVEWQ---VNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL EL Q V+ F + D+ L W + G PGT++ N + L + ++Y
Sbjct: 25 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
Query: 74 PMEAPQVIF 82
P P V F
Sbjct: 85 PDSPPTVKF 93
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93
G + L RW + G P T Y N + L+V+ YP P V F+ ++
Sbjct: 39 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 98
Query: 94 SNGHI 98
S+G +
Sbjct: 99 SSGMV 103
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGT---LYA 59
GF V + L+ W+IEVNGAP LYA
Sbjct: 316 GFDFMVDEELKVWLIEVNGAPACAQKLYA 344
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93
G + L RW + G P T Y N + L+V+ YP P V F+ ++
Sbjct: 34 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 93
Query: 94 SNGHI 98
S+G +
Sbjct: 94 SSGMV 98
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93
G + L RW + G P T Y N + L+V+ YP P V F+ ++
Sbjct: 29 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 88
Query: 94 SNGHI 98
S+G +
Sbjct: 89 SSGMV 93
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93
G + L RW + G P T Y N + L+V+ YP P V F+ ++
Sbjct: 28 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 87
Query: 94 SNGHI 98
S+G +
Sbjct: 88 SSGMV 92
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 12 LSKIASN-RLQKELVEWQVN-PPAGFKHKVTDN----LQRWIIEVNGAPGTLYANETFEL 65
+SK+ N RL +EL + + P + + D+ + +W + G P + + N + L
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 66 QVDFPEHYPMEAPQVIFL 83
+D +YP P+V F+
Sbjct: 62 SIDCGPNYPDSPPKVTFI 79
>pdb|2Z6O|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ +Y G ICL
Sbjct: 85 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICL 122
>pdb|2K07|A Chain A, Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ +Y G ICL
Sbjct: 80 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICL 117
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 12 LSKIASN-RLQKELVEWQVN-PPAGFKHKVTDN----LQRWIIEVNGAPGTLYANETFEL 65
+SK+ N RL +EL + + P + + D+ + +W + G P + + N + L
Sbjct: 1 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 60
Query: 66 QVDFPEHYPMEAPQVIFL 83
+D +YP P+V F+
Sbjct: 61 SIDCGPNYPDSPPKVTFI 78
>pdb|2Z6P|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ Y G ICL
Sbjct: 85 FDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICL 122
>pdb|3EVX|A Chain A, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|B Chain B, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|C Chain C, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|D Chain D, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ Y G ICL
Sbjct: 80 FDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICL 117
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
A R+QK++ E + D+L + + + G Y + F + YP
Sbjct: 7 AQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPH 65
Query: 76 EAPQVIFLPPAPLHPHIYSNGHICLGI 102
+ P+V HP+I G++CL I
Sbjct: 66 DPPKVK-CETXVYHPNIDLEGNVCLNI 91
>pdb|3KPA|A Chain A, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|B Chain B, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|C Chain C, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
Length = 168
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 52 GAPGTLYANETFELQVDF--PEHYPMEAPQVIFLPPAPLHPHIYSNGHIC 99
G T Y NE +E + +F P YP P++ Y G IC
Sbjct: 74 GTCWTYYKNEKYEFEXNFDIPVTYPQAPPEIALPELEGKTVKXYRGGKIC 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,463,765
Number of Sequences: 62578
Number of extensions: 134733
Number of successful extensions: 471
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 124
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)