Query 034040
Match_columns 105
No_of_seqs 110 out of 1032
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 3.9E-39 8.5E-44 216.7 10.3 89 15-104 5-95 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.6E-39 5.5E-44 214.3 8.4 88 16-104 2-90 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 3.3E-37 7.1E-42 200.3 7.7 92 12-104 1-93 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 7.3E-36 1.6E-40 201.5 10.9 88 16-104 3-91 (152)
5 PLN00172 ubiquitin conjugating 100.0 3.2E-35 6.9E-40 197.4 11.4 88 16-104 2-90 (147)
6 KOG0426 Ubiquitin-protein liga 100.0 4.2E-34 9.1E-39 186.2 9.1 92 12-104 1-94 (165)
7 KOG0425 Ubiquitin-protein liga 100.0 1.3E-33 2.8E-38 188.1 9.8 88 16-104 6-95 (171)
8 KOG0418 Ubiquitin-protein liga 100.0 4.5E-33 9.9E-38 190.2 8.2 91 12-104 1-96 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 7.7E-33 1.7E-37 183.8 8.3 85 19-104 1-87 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-31 2.7E-36 178.3 10.3 86 18-104 2-88 (141)
11 KOG0421 Ubiquitin-protein liga 100.0 6.7E-32 1.5E-36 178.0 8.5 94 10-104 24-118 (175)
12 KOG0427 Ubiquitin conjugating 100.0 2.6E-31 5.7E-36 172.9 10.5 104 1-104 1-104 (161)
13 KOG0424 Ubiquitin-protein liga 100.0 2.2E-31 4.8E-36 175.2 8.6 92 12-104 1-98 (158)
14 smart00212 UBCc Ubiquitin-conj 100.0 5.3E-30 1.1E-34 171.2 10.1 86 18-104 1-88 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 2.1E-29 4.5E-34 165.1 7.0 88 15-104 2-91 (153)
16 KOG0894 Ubiquitin-protein liga 99.9 4.5E-26 9.7E-31 158.9 9.9 90 13-105 3-93 (244)
17 KOG0416 Ubiquitin-protein liga 99.9 2.2E-26 4.8E-31 155.3 6.5 84 17-104 5-90 (189)
18 KOG0423 Ubiquitin-protein liga 99.9 1.6E-26 3.5E-31 156.7 4.7 97 7-104 2-99 (223)
19 KOG0420 Ubiquitin-protein liga 99.9 2.3E-25 5E-30 150.5 6.1 93 8-104 21-118 (184)
20 KOG0428 Non-canonical ubiquiti 99.9 8E-22 1.7E-26 140.2 8.5 91 11-105 7-98 (314)
21 KOG0895 Ubiquitin-conjugating 99.7 1E-16 2.3E-21 131.1 5.7 90 15-104 851-942 (1101)
22 KOG0895 Ubiquitin-conjugating 99.6 1.1E-15 2.3E-20 125.3 9.8 95 10-104 277-374 (1101)
23 KOG0429 Ubiquitin-conjugating 99.5 4.3E-14 9.4E-19 99.4 8.5 87 13-101 17-107 (258)
24 KOG0896 Ubiquitin-conjugating 99.3 4E-12 8.7E-17 83.3 6.0 83 15-98 5-93 (138)
25 PF08694 UFC1: Ubiquitin-fold 98.3 3E-07 6.5E-12 61.2 2.5 83 14-102 23-116 (161)
26 PF14461 Prok-E2_B: Prokaryoti 98.1 7.3E-06 1.6E-10 54.0 4.8 42 59-100 34-77 (133)
27 PF05743 UEV: UEV domain; Int 97.6 9.8E-05 2.1E-09 48.1 4.4 59 44-103 29-94 (121)
28 KOG0897 Predicted ubiquitin-co 97.6 2.1E-05 4.5E-10 50.6 0.9 42 63-104 13-54 (122)
29 KOG3357 Uncharacterized conser 97.6 0.00014 3.1E-09 48.0 4.3 84 13-101 25-118 (167)
30 KOG2391 Vacuolar sorting prote 96.9 0.0056 1.2E-07 46.2 7.1 59 42-104 51-115 (365)
31 PF05773 RWD: RWD domain; Int 96.8 0.0035 7.6E-08 39.0 5.0 68 17-85 3-73 (113)
32 smart00591 RWD domain in RING 96.5 0.025 5.5E-07 34.8 7.1 26 60-85 40-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 92.8 1.1 2.3E-05 29.4 7.2 52 33-85 12-66 (122)
34 KOG4018 Uncharacterized conser 91.6 0.81 1.8E-05 32.6 6.0 69 20-89 7-77 (215)
35 PF09765 WD-3: WD-repeat regio 84.7 4.3 9.3E-05 30.3 6.2 64 14-85 98-161 (291)
36 KOG0309 Conserved WD40 repeat- 83.3 7.1 0.00015 33.1 7.3 67 17-85 422-491 (1081)
37 PF14457 Prok-E2_A: Prokaryoti 80.1 1.9 4E-05 29.5 2.6 37 64-101 56-100 (162)
38 PF06113 BRE: Brain and reprod 79.9 2.8 6E-05 31.9 3.7 26 62-89 307-332 (333)
39 cd03457 intradiol_dioxygenase_ 79.0 3.6 7.9E-05 28.7 3.8 25 60-84 86-110 (188)
40 cd00421 intradiol_dioxygenase 78.9 3.8 8.3E-05 27.2 3.8 25 60-84 65-90 (146)
41 smart00340 HALZ homeobox assoc 78.3 2.2 4.9E-05 22.7 2.0 16 15-30 19-34 (44)
42 cd03459 3,4-PCD Protocatechuat 73.1 6.8 0.00015 26.5 3.8 25 60-84 72-101 (158)
43 PF14460 Prok-E2_D: Prokaryoti 66.5 3.2 7E-05 28.4 1.2 13 90-102 98-110 (175)
44 TIGR02423 protocat_alph protoc 64.7 12 0.00025 26.3 3.7 25 60-84 96-125 (193)
45 cd03463 3,4-PCD_alpha Protocat 60.7 16 0.00034 25.5 3.7 24 61-84 93-121 (185)
46 KOG4445 Uncharacterized conser 55.8 18 0.00039 27.5 3.5 26 61-86 45-70 (368)
47 PF08203 RNA_polI_A14: Yeast R 55.7 8.8 0.00019 23.0 1.6 15 13-27 57-71 (76)
48 TIGR03737 PRTRC_B PRTRC system 54.6 6.7 0.00014 28.3 1.1 16 86-101 132-150 (228)
49 PF09606 Med15: ARC105 or Med1 52.9 4.5 9.8E-05 34.2 0.0 23 62-84 715-737 (799)
50 smart00107 BTK Bruton's tyrosi 51.5 6.9 0.00015 20.1 0.5 11 87-97 7-17 (36)
51 PF04881 Adeno_GP19K: Adenovir 51.5 28 0.00061 23.1 3.5 31 40-70 44-75 (139)
52 TIGR02296 HpaC 4-hydroxyphenyl 50.7 13 0.00028 24.8 2.0 30 75-104 36-67 (154)
53 PF00779 BTK: BTK motif; Inte 50.2 5.7 0.00012 19.8 0.1 11 87-97 2-12 (32)
54 TIGR03615 RutF pyrimidine util 49.3 77 0.0017 21.1 6.6 66 22-104 4-72 (156)
55 PF00845 Gemini_BL1: Geminivir 48.4 51 0.0011 24.3 4.7 49 41-90 100-156 (276)
56 TIGR02439 catechol_proteo cate 48.4 30 0.00066 25.8 3.7 25 60-84 180-222 (285)
57 PRK15486 hpaC 4-hydroxyphenyla 47.9 16 0.00035 25.0 2.1 68 20-104 6-76 (170)
58 cd03464 3,4-PCD_beta Protocate 46.0 36 0.00079 24.4 3.7 24 60-83 122-152 (220)
59 cd03461 1,2-HQD Hydroxyquinol 45.3 37 0.00079 25.2 3.8 25 60-84 172-214 (277)
60 COG1853 Conserved protein/doma 45.0 23 0.00049 24.0 2.5 30 75-104 44-75 (176)
61 TIGR02422 protocat_beta protoc 44.9 38 0.00083 24.3 3.7 24 60-83 117-147 (220)
62 TIGR02438 catachol_actin catec 44.8 39 0.00083 25.2 3.8 25 60-84 184-226 (281)
63 PF14455 Metal_CEHH: Predicted 44.6 65 0.0014 22.1 4.5 61 21-85 11-76 (177)
64 cd03460 1,2-CTD Catechol 1,2 d 43.1 41 0.0009 25.0 3.7 25 60-84 176-218 (282)
65 KOG3285 Spindle assembly check 42.0 52 0.0011 23.1 3.8 43 13-55 117-160 (203)
66 PF15572 Imm26: Immunity prote 41.5 36 0.00077 21.4 2.7 27 53-84 7-33 (96)
67 PF12065 DUF3545: Protein of u 41.1 20 0.00043 20.5 1.4 14 16-29 35-48 (59)
68 PF06113 BRE: Brain and reprod 40.4 41 0.00088 25.7 3.4 35 57-91 61-95 (333)
69 COG3866 PelB Pectate lyase [Ca 39.6 65 0.0014 24.6 4.3 40 44-84 197-240 (345)
70 TIGR01239 galT_2 galactose-1-p 38.8 30 0.00064 27.8 2.5 26 58-93 356-386 (489)
71 TIGR02465 chlorocat_1_2 chloro 38.6 57 0.0012 23.8 3.8 25 60-84 150-192 (246)
72 cd05845 Ig2_L1-CAM_like Second 37.7 98 0.0021 19.0 4.7 26 58-85 16-41 (95)
73 KOG1047 Bifunctional leukotrie 36.2 39 0.00085 27.8 2.9 28 57-85 249-279 (613)
74 COG2819 Predicted hydrolase of 35.3 72 0.0016 23.6 3.9 29 56-84 16-46 (264)
75 PF14824 Sirohm_synth_M: Siroh 34.7 55 0.0012 16.1 2.3 19 9-27 11-29 (30)
76 PF14135 DUF4302: Domain of un 33.0 1.7E+02 0.0036 20.8 5.5 71 16-96 10-103 (235)
77 cd03458 Catechol_intradiol_dio 32.9 78 0.0017 23.3 3.8 25 60-84 156-198 (256)
78 KOG4274 Positive cofactor 2 (P 32.6 1.1E+02 0.0024 25.5 4.8 50 17-77 621-675 (742)
79 PF06305 DUF1049: Protein of u 31.8 51 0.0011 18.4 2.2 17 14-30 47-63 (68)
80 PF05800 GvpO: Gas vesicle syn 31.2 1.4E+02 0.003 18.8 5.8 39 13-52 19-58 (100)
81 COG4468 GalT Galactose-1-phosp 31.2 45 0.00097 26.4 2.4 24 59-92 362-390 (503)
82 PRK05270 galactose-1-phosphate 30.5 50 0.0011 26.6 2.6 26 58-93 359-389 (493)
83 cd03462 1,2-CCD chlorocatechol 29.7 94 0.002 22.7 3.7 25 60-84 151-193 (247)
84 PF00775 Dioxygenase_C: Dioxyg 29.6 40 0.00086 23.3 1.8 24 60-83 83-124 (183)
85 PF09458 H_lectin: H-type lect 27.9 86 0.0019 17.6 2.8 21 62-83 2-22 (72)
86 KOG3203 Mitochondrial/chloropl 27.6 42 0.0009 23.0 1.5 12 87-99 51-62 (165)
87 PF09929 DUF2161: Uncharacteri 27.4 1.2E+02 0.0027 19.7 3.6 23 12-34 24-46 (118)
88 COG0544 Tig FKBP-type peptidyl 25.4 1.7E+02 0.0037 23.2 4.8 14 62-75 210-223 (441)
89 PF09943 DUF2175: Uncharacteri 25.2 73 0.0016 20.2 2.2 20 45-66 2-21 (101)
90 KOG3696 Aspartyl beta-hydroxyl 24.9 62 0.0013 24.7 2.1 38 60-98 287-329 (334)
91 COG4957 Predicted transcriptio 24.8 38 0.00083 22.7 0.9 18 62-79 103-120 (148)
92 PF03487 IL13: Interleukin-13; 24.3 1.2E+02 0.0026 16.0 2.5 21 10-30 22-42 (43)
93 KOG0700 Protein phosphatase 2C 23.3 1.7E+02 0.0038 22.9 4.3 76 17-97 247-331 (390)
94 COG2375 ViuB Siderophore-inter 22.7 2.4E+02 0.0051 20.9 4.8 61 42-103 29-107 (265)
95 CHL00130 rbcS ribulose-1,5-bis 22.4 2.5E+02 0.0054 18.8 5.4 31 17-48 61-93 (138)
96 PF02970 TBCA: Tubulin binding 21.5 1.2E+02 0.0025 18.5 2.6 16 14-29 6-21 (90)
97 PF11619 P53_C: Transcription 21.4 1.6E+02 0.0034 17.2 2.9 23 42-71 3-25 (71)
98 PF09967 DUF2201: VWA-like dom 20.9 2.4E+02 0.0051 18.0 4.5 31 9-39 8-38 (126)
99 PF06191 DUF995: Protein of un 20.8 55 0.0012 22.0 1.1 12 91-102 76-87 (145)
100 PF04447 DUF550: Protein of un 20.6 1.2E+02 0.0026 19.2 2.5 20 13-32 20-39 (100)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-39 Score=216.69 Aligned_cols=89 Identities=38% Similarity=0.747 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
.+.+||++|+++|+++++.++++.+ ++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.| +||||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t-~i~HPNV 83 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT-KIFHPNV 83 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc-CCcCCCc
Confidence 3899999999999999999999999 55 9999999999999999999999999999999999999999999 8999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
|++|+|||+||+
T Consensus 84 ~~~G~vCLdIL~ 95 (153)
T COG5078 84 DPSGNVCLDILK 95 (153)
T ss_pred CCCCCChhHHHh
Confidence 999999999985
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-39 Score=214.34 Aligned_cols=88 Identities=43% Similarity=0.782 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~ 94 (105)
+.+||.||+++|++++++|+++.+ ++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.| +||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T-kIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT-KIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec-ccccCCcCc
Confidence 356999999999999999999998 899999999999999999999999999999999999999999999 899999999
Q ss_pred CCceEEecCC
Q 034040 95 NGHICLGIAS 104 (105)
Q Consensus 95 ~G~iCl~iL~ 104 (105)
.|+|||+||+
T Consensus 81 ~G~IclDILk 90 (148)
T KOG0417|consen 81 NGRICLDILK 90 (148)
T ss_pred cccchHHhhh
Confidence 9999999996
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=200.35 Aligned_cols=92 Identities=34% Similarity=0.695 Sum_probs=89.4
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP 90 (105)
|+..+-+||++|+++++++++.|++..+ ++|+..|.++|+||.+|||+||+|++.|.|.++||.+||.|+|.| ++|||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs-~mFHP 79 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS-KMFHP 79 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee-eccCC
Confidence 5678899999999999999999999999 999999999999999999999999999999999999999999999 99999
Q ss_pred cccCCCceEEecCC
Q 034040 91 HIYSNGHICLGIAS 104 (105)
Q Consensus 91 nv~~~G~iCl~iL~ 104 (105)
|||++|.+||+||+
T Consensus 80 Nvya~G~iClDiLq 93 (152)
T KOG0419|consen 80 NVYADGSICLDILQ 93 (152)
T ss_pred CcCCCCcchHHHHh
Confidence 99999999999985
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=7.3e-36 Score=201.51 Aligned_cols=88 Identities=38% Similarity=0.676 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~ 94 (105)
+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t-~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLT-KIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEec-CCeeceECC
Confidence 579999999999999999999998 889999999999999999999999999999999999999999999 899999999
Q ss_pred CCceEEecCC
Q 034040 95 NGHICLGIAS 104 (105)
Q Consensus 95 ~G~iCl~iL~ 104 (105)
+|+||+++|+
T Consensus 82 ~G~iCl~iL~ 91 (152)
T PTZ00390 82 LGRICLDILK 91 (152)
T ss_pred CCeEECccCc
Confidence 9999999984
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.2e-35 Score=197.45 Aligned_cols=88 Identities=38% Similarity=0.676 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~ 94 (105)
+.+||++|+++|++++++|+.+.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTT-KIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEec-CcccceECC
Confidence 468999999999999999999999 889999999999999999999999999999999999999999999 899999999
Q ss_pred CCceEEecCC
Q 034040 95 NGHICLGIAS 104 (105)
Q Consensus 95 ~G~iCl~iL~ 104 (105)
+|.||+++|+
T Consensus 81 ~G~iCl~il~ 90 (147)
T PLN00172 81 NGSICLDILR 90 (147)
T ss_pred CCEEEcccCc
Confidence 9999999984
No 6
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=186.18 Aligned_cols=92 Identities=29% Similarity=0.637 Sum_probs=88.6
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
|+..++|||++|+++|..++++|+.+.+ ++|.+.|.++|.||++|+|+||.|-.++.||.+||.+||+++|.- .+||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc-~~fH 79 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC-EMFH 79 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec-cccc
Confidence 4567899999999999999999999998 899999999999999999999999999999999999999999999 8999
Q ss_pred ccccCCCceEEecCC
Q 034040 90 PHIYSNGHICLGIAS 104 (105)
Q Consensus 90 Pnv~~~G~iCl~iL~ 104 (105)
|||+++|+||++||+
T Consensus 80 PNiy~dG~VCISILH 94 (165)
T KOG0426|consen 80 PNIYPDGRVCISILH 94 (165)
T ss_pred CcccCCCeEEEEEee
Confidence 999999999999985
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=188.06 Aligned_cols=88 Identities=33% Similarity=0.702 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~ 93 (105)
+..-|+++|++|++.+..|+.+.. +.|+++|.|.|+||++|.|+||.|+..+.||.+||.+||+++|.| ++||||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s-~mwHPNvy 84 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS-KMWHPNVY 84 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh-hhcCCCcC
Confidence 567889999999999999999998 569999999999999999999999999999999999999999999 99999999
Q ss_pred CCCceEEecCC
Q 034040 94 SNGHICLGIAS 104 (105)
Q Consensus 94 ~~G~iCl~iL~ 104 (105)
++|+||++||.
T Consensus 85 ~~G~vCISILH 95 (171)
T KOG0425|consen 85 EDGDVCISILH 95 (171)
T ss_pred CCCCEEEEeec
Confidence 99999999995
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-33 Score=190.18 Aligned_cols=91 Identities=34% Similarity=0.618 Sum_probs=85.6
Q ss_pred ccHHHHHHHHHHHHHHhhCC---CCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040 12 LSKIASNRLQKELVEWQVNP---PAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~---~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i 87 (105)
|+. +.+||++|++++.+++ ..|+.+.. ++|+.+..+.|.||+|||||||.|.++|.+|++|||+||+|+|.| +|
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~T-kI 78 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFIT-KI 78 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeee-ee
Confidence 455 8999999999999987 67888888 889999999999999999999999999999999999999999999 99
Q ss_pred ccccccC-CCceEEecCC
Q 034040 88 LHPHIYS-NGHICLGIAS 104 (105)
Q Consensus 88 ~HPnv~~-~G~iCl~iL~ 104 (105)
|||||++ +|.|||+||+
T Consensus 79 wHPnVSs~tGaICLDilk 96 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILK 96 (200)
T ss_pred ecCCCCcccccchhhhhh
Confidence 9999986 9999999985
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=7.7e-33 Score=183.83 Aligned_cols=85 Identities=46% Similarity=0.867 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCCC
Q 034040 19 RLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG 96 (105)
Q Consensus 19 Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~G 96 (105)
||++|+++++++++.|+.+.+ ++ |+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|+||||+.+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t-~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLT-PIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESS-S-SBTTB-TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccc-ccccccccccc
Confidence 899999999999999999998 64 9999999999999999999999999999999999999999999 79999999999
Q ss_pred ceEEecCC
Q 034040 97 HICLGIAS 104 (105)
Q Consensus 97 ~iCl~iL~ 104 (105)
+||+++|+
T Consensus 80 ~icl~~l~ 87 (140)
T PF00179_consen 80 RICLDILN 87 (140)
T ss_dssp BBGHGGGT
T ss_pred cchhhhhh
Confidence 99999985
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=1.2e-31 Score=178.32 Aligned_cols=86 Identities=40% Similarity=0.816 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCCC
Q 034040 18 NRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG 96 (105)
Q Consensus 18 ~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~G 96 (105)
+||++|+++++++++.|+.+.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.| +++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~-~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT-KIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC-CcccCCCCCCC
Confidence 7999999999999999999999 779999999999999999999999999999999999999999999 89999999999
Q ss_pred ceEEecCC
Q 034040 97 HICLGIAS 104 (105)
Q Consensus 97 ~iCl~iL~ 104 (105)
+||+++|+
T Consensus 81 ~icl~~l~ 88 (141)
T cd00195 81 KICLSILK 88 (141)
T ss_pred CCchhhcC
Confidence 99999986
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-32 Score=177.98 Aligned_cols=94 Identities=32% Similarity=0.644 Sum_probs=88.7
Q ss_pred ccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCc
Q 034040 10 KALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPL 88 (105)
Q Consensus 10 ~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~ 88 (105)
........|||++|+..|+....+|+++.+ +||++.|.++|.||.+|+|+|-.|++.+.||.+||++||.|+|+|| .|
T Consensus 24 v~~~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp-c~ 102 (175)
T KOG0421|consen 24 VVDGHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP-CF 102 (175)
T ss_pred cccCchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc-cc
Confidence 333567899999999999999999999999 7899999999999999999999999999999999999999999995 99
Q ss_pred cccccCCCceEEecCC
Q 034040 89 HPHIYSNGHICLGIAS 104 (105)
Q Consensus 89 HPnv~~~G~iCl~iL~ 104 (105)
|||||-.|.|||+||+
T Consensus 103 HPNVD~~GnIcLDILk 118 (175)
T KOG0421|consen 103 HPNVDLSGNICLDILK 118 (175)
T ss_pred CCCccccccchHHHHH
Confidence 9999999999999985
No 12
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=172.86 Aligned_cols=104 Identities=84% Similarity=1.368 Sum_probs=101.5
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeE
Q 034040 1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80 (105)
Q Consensus 1 m~~s~~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 80 (105)
||||+++++..++.++.+||+||+.+++.+++.|+.....+|+.+|.+.+.|-+||.|+|-.|.+.+.||+.||++.|+|
T Consensus 1 mtss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV 80 (161)
T KOG0427|consen 1 MTSSSAPSRKALSKIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV 80 (161)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCccccccCCCceEEecCC
Q 034040 81 IFLPPAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 81 ~f~tp~i~HPnv~~~G~iCl~iL~ 104 (105)
-|..|...||+||++|.|||+||-
T Consensus 81 mF~~~~P~HPHiYSNGHICL~iL~ 104 (161)
T KOG0427|consen 81 MFVGPAPLHPHIYSNGHICLDILY 104 (161)
T ss_pred EEecCCCCCCceecCCeEEEEeec
Confidence 999988899999999999999983
No 13
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=175.21 Aligned_cols=92 Identities=38% Similarity=0.784 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee---c---CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV---T---DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~---~---~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
||..+..||+.|-+.+.++.+-|+.+.+ . .|+..|+|.|.|+.||+||||.|++++.||++||.+||+++|.+|
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 4667799999999999999999999998 1 378999999999999999999999999999999999999999996
Q ss_pred CCccccccCCCceEEecCC
Q 034040 86 APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 86 ~i~HPnv~~~G~iCl~iL~ 104 (105)
.||||||++|.|||+||+
T Consensus 81 -l~HPNVypsgtVcLsiL~ 98 (158)
T KOG0424|consen 81 -LFHPNVYPSGTVCLSILN 98 (158)
T ss_pred -CcCCCcCCCCcEehhhhc
Confidence 999999999999999996
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=5.3e-30 Score=171.17 Aligned_cols=86 Identities=41% Similarity=0.785 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCC
Q 034040 18 NRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN 95 (105)
Q Consensus 18 ~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~ 95 (105)
+||++|+++++++++.|+.+.+ + +|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.+ .++||||+++
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~-~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFIT-KIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeC-CceEeeECCC
Confidence 5999999999999999999888 5 49999999999999999999999999999999999999999999 6999999999
Q ss_pred CceEEecCC
Q 034040 96 GHICLGIAS 104 (105)
Q Consensus 96 G~iCl~iL~ 104 (105)
|+||+++|.
T Consensus 80 G~icl~~l~ 88 (145)
T smart00212 80 GEICLDILK 88 (145)
T ss_pred CCEehhhcC
Confidence 999999885
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=165.15 Aligned_cols=88 Identities=33% Similarity=0.597 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
.+.+||+||+++|++++...+.... ++|++.|.+.|. |++.||..|.|+++|.||.+|||+||+|.|.| +||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~t-kiYHpNV 79 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKT-KIYHPNV 79 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeee-eeccCCC
Confidence 4679999999999999887665554 679999999999 78889999999999999999999999999999 9999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
|+.|.||++||.
T Consensus 80 De~gqvClPiis 91 (153)
T KOG0422|consen 80 DEKGQVCLPIIS 91 (153)
T ss_pred CCCCceeeeeee
Confidence 999999999985
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.5e-26 Score=158.87 Aligned_cols=90 Identities=28% Similarity=0.521 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn 91 (105)
+..+.|||+|||+.|++++.+++.+.+ ++|+.+|+.+|.||+||||+||.|+.+|.||.+||++||.|+++||.. .
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG---R 79 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG---R 79 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC---c
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999732 2
Q ss_pred ccCCCceEEecCCC
Q 034040 92 IYSNGHICLGIASF 105 (105)
Q Consensus 92 v~~~G~iCl~iL~~ 105 (105)
+-.+-|+||+|-+|
T Consensus 80 FktntRLCLSiSDf 93 (244)
T KOG0894|consen 80 FKTNTRLCLSISDF 93 (244)
T ss_pred eecCceEEEecccc
Confidence 44577899999876
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-26 Score=155.30 Aligned_cols=84 Identities=20% Similarity=0.647 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC-
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS- 94 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~- 94 (105)
-|||..|+..|.. .+..+.. ++++.+++|.+.||.+|||+||+|++++.+|++||++.|+|.|.+ |||||||+.
T Consensus 5 ~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvn-KIfHPNIDe~ 80 (189)
T KOG0416|consen 5 KRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVN-KIFHPNIDEA 80 (189)
T ss_pred ccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccccee-eccCCCchhc
Confidence 5899999988876 5667877 778999999999999999999999999999999999999999999 999999996
Q ss_pred CCceEEecCC
Q 034040 95 NGHICLGIAS 104 (105)
Q Consensus 95 ~G~iCl~iL~ 104 (105)
+|.|||+.|+
T Consensus 81 SGsVCLDViN 90 (189)
T KOG0416|consen 81 SGSVCLDVIN 90 (189)
T ss_pred cCccHHHHHh
Confidence 9999999875
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-26 Score=156.69 Aligned_cols=97 Identities=29% Similarity=0.562 Sum_probs=91.9
Q ss_pred CCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 7 PSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 7 ~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
.|.++.....++.+++|++++...+++|+.|.+ ++|..+.++.|.||.||||++|+|++++.+.++||.+||+-.|+|
T Consensus 2 ~snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlT- 80 (223)
T KOG0423|consen 2 ASNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLT- 80 (223)
T ss_pred CcccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeee-
Confidence 345677778899999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCceEEecCC
Q 034040 86 APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 86 ~i~HPnv~~~G~iCl~iL~ 104 (105)
+||||||-.+|+||.+.|+
T Consensus 81 KIFHPNVaaNGEICVNtLK 99 (223)
T KOG0423|consen 81 KIFHPNVAANGEICVNTLK 99 (223)
T ss_pred eeccCCcccCceehhhhhh
Confidence 9999999999999999875
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-25 Score=150.53 Aligned_cols=93 Identities=27% Similarity=0.527 Sum_probs=76.9
Q ss_pred CcccccHHHHHHHHHHHHHHhhCCCCCeEEee---cCCcc--ceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040 8 SRKALSKIASNRLQKELVEWQVNPPAGFKHKV---TDNLQ--RWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF 82 (105)
Q Consensus 8 ~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~---~~~~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 82 (105)
+.....+.++-||++|+.++.- +++++... .++.. +++++|. |+++.|+||.|+|++.+|+.||++||+|.+
T Consensus 21 ~~~~~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkC 97 (184)
T KOG0420|consen 21 STRKKVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKC 97 (184)
T ss_pred cccccccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeee
Confidence 4445556778888888887754 55655432 33443 5999998 888899999999999999999999999999
Q ss_pred ecCCCccccccCCCceEEecCC
Q 034040 83 LPPAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 83 ~tp~i~HPnv~~~G~iCl~iL~ 104 (105)
+| +|||||||.+|.|||+||+
T Consensus 98 lt-kV~HPNId~~GnVCLnILR 118 (184)
T KOG0420|consen 98 LT-KVYHPNIDLDGNVCLNILR 118 (184)
T ss_pred ee-ccccCCcCCcchHHHHHHH
Confidence 99 9999999999999999985
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8e-22 Score=140.16 Aligned_cols=91 Identities=31% Similarity=0.626 Sum_probs=80.5
Q ss_pred cccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
+..+.+.|||+||.++|+ ++-+.+.+.+ ++|+++|+++|.||.||-||||+|+.+|.||.+||++||.+-.+||+.
T Consensus 7 N~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG-- 83 (314)
T KOG0428|consen 7 NLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG-- 83 (314)
T ss_pred cccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--
Confidence 345688999999999998 7777888888 999999999999999999999999999999999999999999999732
Q ss_pred ccccCCCceEEecCCC
Q 034040 90 PHIYSNGHICLGIASF 105 (105)
Q Consensus 90 Pnv~~~G~iCl~iL~~ 105 (105)
.+.-+-+|||+|-+|
T Consensus 84 -RFE~nkKiCLSISgy 98 (314)
T KOG0428|consen 84 -RFEVNKKICLSISGY 98 (314)
T ss_pred -ceeeCceEEEEecCC
Confidence 244577899999876
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-16 Score=131.14 Aligned_cols=90 Identities=26% Similarity=0.531 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC-CCccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP-APLHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp-~i~HPnv 92 (105)
...+..+.|.+-|..+.+.|+.|.. ++.+....+.|.|++||||.+|+|.|.+.||++||..||.|...+- -.++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 4455556677777788999999999 9999999999999999999999999999999999999999999984 3479999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
|.+|+|||+||+
T Consensus 931 y~~g~vc~s~l~ 942 (1101)
T KOG0895|consen 931 YEDGKVCLSLLN 942 (1101)
T ss_pred ccccceehhhhc
Confidence 999999999996
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=125.32 Aligned_cols=95 Identities=29% Similarity=0.543 Sum_probs=87.4
Q ss_pred ccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC--C
Q 034040 10 KALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP--A 86 (105)
Q Consensus 10 ~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp--~ 86 (105)
..-+....+|+++|++-+.++.+.|+.+.+ +.++....++|.||.|+||++|+|.|.|.||..||..||.|.++|. .
T Consensus 277 k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~ 356 (1101)
T KOG0895|consen 277 KPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV 356 (1101)
T ss_pred CccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence 334567789999999999999999999998 8999999999999999999999999999999999999999999983 2
Q ss_pred CccccccCCCceEEecCC
Q 034040 87 PLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 87 i~HPnv~~~G~iCl~iL~ 104 (105)
.+.||.|.+|+||+++|.
T Consensus 357 R~nPNlYn~GKVcLslLg 374 (1101)
T KOG0895|consen 357 RLNPNLYNDGKVCLSLLG 374 (1101)
T ss_pred eecCCcccCceEEeeeee
Confidence 679999999999999983
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.3e-14 Score=99.40 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCC--CCCeEEEecCCCcc
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM--EAPQVIFLPPAPLH 89 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~--~pP~v~f~tp~i~H 89 (105)
.....--|..|+....+.+-+|+++.+ -.|-+.|.++|++..| .|.||+|+|.|.+|++||. .-|+|.|.+ .++|
T Consensus 17 ~i~qey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q-~vfH 94 (258)
T KOG0429|consen 17 NILQEYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQ-SVFH 94 (258)
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeec-cccc
Confidence 344556788899999999999999999 6888999999999887 9999999999999999994 579999999 6999
Q ss_pred ccccC-CCceEEe
Q 034040 90 PHIYS-NGHICLG 101 (105)
Q Consensus 90 Pnv~~-~G~iCl~ 101 (105)
|+|.+ ++.+|++
T Consensus 95 P~icp~skeLdl~ 107 (258)
T KOG0429|consen 95 PLICPKSKELDLN 107 (258)
T ss_pred cccCCCccceeHh
Confidence 99997 8999985
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4e-12 Score=83.28 Aligned_cols=83 Identities=29% Similarity=0.392 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee---cCC--ccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV---TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~---~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
.+.-||.+|+.+=++...+|..... .+| +..|...|.||+.|+||+.+|.++|..-++||..||.|+|.| ++--
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~t-kinm 83 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGT-KINM 83 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEE-Eeee
Confidence 3566899999888887666655544 233 468999999999999999999999999999999999999999 9988
Q ss_pred ccccC-CCce
Q 034040 90 PHIYS-NGHI 98 (105)
Q Consensus 90 Pnv~~-~G~i 98 (105)
+.|.. +|.|
T Consensus 84 ~gvn~~~g~V 93 (138)
T KOG0896|consen 84 NGVNSSNGVV 93 (138)
T ss_pred cccccCCCcc
Confidence 88875 6554
No 25
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.35 E-value=3e-07 Score=61.20 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEE
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVIF 82 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f 82 (105)
..-..||..||+.|-+- +.. +++-.+|.-.-.-++||-|.|. .|.+++.+|..||..||.|..
T Consensus 23 ~~W~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 56789999999998551 111 1111233322233555555552 345666779999999999988
Q ss_pred ecCCCccccccCCCceEEec
Q 034040 83 LPPAPLHPHIYSNGHICLGI 102 (105)
Q Consensus 83 ~tp~i~HPnv~~~G~iCl~i 102 (105)
..-.--..-.|..|+|||++
T Consensus 97 PeLdGKTaKMYRGGkIClt~ 116 (161)
T PF08694_consen 97 PELDGKTAKMYRGGKICLTD 116 (161)
T ss_dssp GGGTTT-SSBCCCCBB---T
T ss_pred cccCCchhhhhcCceEeeec
Confidence 74223344567899999975
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.08 E-value=7.3e-06 Score=54.03 Aligned_cols=42 Identities=36% Similarity=0.810 Sum_probs=38.1
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEecCCC--ccccccCCCceEE
Q 034040 59 ANETFELQVDFPEHYPMEAPQVIFLPPAP--LHPHIYSNGHICL 100 (105)
Q Consensus 59 ~gg~f~~~i~fp~~yP~~pP~v~f~tp~i--~HPnv~~~G~iCl 100 (105)
.|+.+.+.|.||++||..||.|....+.- +=|||+.+|.+|+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl 77 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCL 77 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEE
Confidence 68999999999999999999999987532 7899999999999
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.64 E-value=9.8e-05 Score=48.10 Aligned_cols=59 Identities=29% Similarity=0.559 Sum_probs=37.7
Q ss_pred cceEEEEEcCCCCCCCCCEEE--EEEECCCCCCCCCCeEEEecC-----CCccccccCCCceEEecC
Q 034040 44 QRWIIEVNGAPGTLYANETFE--LQVDFPEHYPMEAPQVIFLPP-----APLHPHIYSNGHICLGIA 103 (105)
Q Consensus 44 ~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~tp-----~i~HPnv~~~G~iCl~iL 103 (105)
.+--+.+.|--.=.|+|..|. +.|.+|.+||.+||.+..... +.-| +||++|+|.++.|
T Consensus 29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~-~Vd~~G~v~~pyL 94 (121)
T PF05743_consen 29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSH-HVDSNGRVYLPYL 94 (121)
T ss_dssp EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCC-CB-TTSBB-SHHH
T ss_pred hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCC-eECCCCCEeCchh
Confidence 333444444111268898886 566789999999999977642 2234 9999999988765
No 28
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2.1e-05 Score=50.61 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=34.3
Q ss_pred EEEEEECCCCCCCCCCeEEEecCCCccccccCCCceEEecCC
Q 034040 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 63 f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~G~iCl~iL~ 104 (105)
..+.+.|+++||+.||.+|...|.+-.--|-.+|+||+.||.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt 54 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT 54 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc
Confidence 456678999999999999888876555556679999999874
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.00014 Score=47.97 Aligned_cols=84 Identities=23% Similarity=0.454 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCE----------EEEEEECCCCCCCCCCeEEE
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANET----------FELQVDFPEHYPMEAPQVIF 82 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~----------f~~~i~fp~~yP~~pP~v~f 82 (105)
...-..||..|++.|-.. +... +++-..|.-.-.-++||-|-|.+ |.+++.+|-.||-.+|.+..
T Consensus 25 ~~~wvqrlkeey~sli~y----vqnn-k~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIAY----VQNN-KSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred chHHHHHHHHHHHHHHHH----HHhC-cccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 345678999999998551 1111 23334454444557788887743 45566679999999999877
Q ss_pred ecCCCccccccCCCceEEe
Q 034040 83 LPPAPLHPHIYSNGHICLG 101 (105)
Q Consensus 83 ~tp~i~HPnv~~~G~iCl~ 101 (105)
.--..-.-..|..|+|||.
T Consensus 100 peldgktakmyrggkiclt 118 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLT 118 (167)
T ss_pred cccCchhhhhhcCceEeec
Confidence 6321222345789999986
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.0056 Score=46.21 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=43.4
Q ss_pred CccceEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecC----CCccccccCCCceEEecCC
Q 034040 42 NLQRWIIEVNGAPGTLYANETFEL--QVDFPEHYPMEAPQVIFLPP----APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 42 ~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~yP~~pP~v~f~tp----~i~HPnv~~~G~iCl~iL~ 104 (105)
+.+...++|. .+|.|..|.+ .|.+.+.||..||.+..... .-.|-+|+++|+|.|+.|+
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh 115 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH 115 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc
Confidence 3444444444 3788988875 55679999999999965532 1238999999999999885
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.82 E-value=0.0035 Score=39.05 Aligned_cols=68 Identities=15% Similarity=0.296 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEc--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNG--APGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
..+...|+..|+.--+... ... ..+...+.+.+.. ...+.-..-.+.+.+.||++||..+|.|.+.++
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3567788888877544443 112 3344556666621 233344556899999999999999999998874
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.47 E-value=0.025 Score=34.85 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=22.5
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 60 NETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 60 gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
.-.+.+.+.||++||..+|.|.+.++
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34588999999999999999998873
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=92.84 E-value=1.1 Score=29.39 Aligned_cols=52 Identities=23% Similarity=0.622 Sum_probs=38.2
Q ss_pred CCeEEee-cCCccceEEEEEc--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 33 AGFKHKV-TDNLQRWIIEVNG--APGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 33 ~~~~~~~-~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
.|+.... .+.-..|.+ |.+ -+.+.|.+..=.+.|.+|+.||..+|-+-+..|
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 4555555 444456666 666 334479999999999999999999988777765
No 34
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.64 E-value=0.81 Score=32.64 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCC--CCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 20 LQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPG--TLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 20 l~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~--tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
...|+..|...-+.-+....+.+...+.+.|.--.+ .-+.| .+.+.+.++++||..+|-+.+..++-++
T Consensus 7 Qe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~~~~~~~ 77 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAFENENLE 77 (215)
T ss_pred HHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecccccccc
Confidence 455666666544333312223333346666663222 12223 7889999999999999999665544443
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=84.75 E-value=4.3 Score=30.25 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
....++|.+|+.++..+. .+.+..+++....++.+.. . .....++|.++.+||.++|.+...-|
T Consensus 98 ~~~ys~ll~EIe~IGW~k--l~~i~~d~~ls~i~l~~~D--~----~R~H~l~l~l~~~yp~~~p~~~~~~P 161 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDK--LVQIQFDDDLSTIKLKIFD--S----SRQHYLELKLPSNYPFEPPSCSLDLP 161 (291)
T ss_dssp -GGC-CHHHHHHHHHCGC--CEEEEE-CCCSEEEEEEET--T----CEEEEEEEETTTTTTTSEEEECS-TT
T ss_pred cHHHHHHHHHHHHhcccc--ceEEecCCCccEEEEEEEc--C----CceEEEEEEECCCCCCCCceeeCCCC
Confidence 445678889999886633 3344447888888888872 1 26789999999999999998655544
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.26 E-value=7.1 Score=33.15 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEE-EEEEECCCCCCCC-CCeEEEecC
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETF-ELQVDFPEHYPME-APQVIFLPP 85 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f-~~~i~fp~~yP~~-pP~v~f~tp 85 (105)
..-|.+|+.-|-. +..++.+.. +-.-..-.+.+.+|-. +-+|-+| ++.|.||.+||.+ +|++.|.-|
T Consensus 422 pQnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3456667766633 233443432 2222445556666544 3344444 7888999999974 799999864
No 37
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=80.08 E-value=1.9 Score=29.46 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=26.6
Q ss_pred EEEEECCCCCCCCCCeEEEecCCCc---cccccCC-----CceEEe
Q 034040 64 ELQVDFPEHYPMEAPQVIFLPPAPL---HPHIYSN-----GHICLG 101 (105)
Q Consensus 64 ~~~i~fp~~yP~~pP~v~f~tp~i~---HPnv~~~-----G~iCl~ 101 (105)
.+.|.|+.+||..+|.|.++- +-| +|++... ..+||-
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR-~dFP~~lpH~~~~~~~~p~~lCl~ 100 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALR-KDFPGNLPHQNPGPEGEPVSLCLY 100 (162)
T ss_pred eEEEEecCCCCCCCccchhhH-hhCCCCCCccCCCCCCCCccceEe
Confidence 467899999999999776664 222 4777654 568985
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=79.91 E-value=2.8 Score=31.93 Aligned_cols=26 Identities=23% Similarity=0.631 Sum_probs=22.9
Q ss_pred EEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 62 TFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 62 ~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
.|-+-|.+|..||...|.++|.+ +||
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS--~yH 332 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS--VYH 332 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe--ecc
Confidence 46777788999999999999999 687
No 39
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=79.02 E-value=3.6 Score=28.68 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEec
Q 034040 60 NETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
.|.|.|+-++|--||.++|.|+|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999999985
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=78.93 E-value=3.8 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCEEEEEEECCCCCC-CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP-MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP-~~pP~v~f~t 84 (105)
.|.|.|.-.+|-.|| ..||.|+|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999999974
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.30 E-value=2.2 Score=22.73 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhC
Q 034040 15 IASNRLQKELVEWQVN 30 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~ 30 (105)
.-.+||++|+++|...
T Consensus 19 eeNrRL~ke~~eLral 34 (44)
T smart00340 19 EENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3579999999999764
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=73.06 E-value=6.8 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCEEEEEEECCCCCC-----CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP-----MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP-----~~pP~v~f~t 84 (105)
.|.|.|+-++|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 8999999974
No 43
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=66.46 E-value=3.2 Score=28.43 Aligned_cols=13 Identities=46% Similarity=0.984 Sum_probs=11.2
Q ss_pred ccccCCCceEEec
Q 034040 90 PHIYSNGHICLGI 102 (105)
Q Consensus 90 Pnv~~~G~iCl~i 102 (105)
+||+.+|+||+.-
T Consensus 98 ~NV~~~g~vC~G~ 110 (175)
T PF14460_consen 98 FNVYSNGSVCWGN 110 (175)
T ss_pred cccCCCCcEeeCC
Confidence 4999999999864
No 44
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=64.71 E-value=12 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCEEEEEEECCCCCCC-----CCCeEEEec
Q 034040 60 NETFELQVDFPEHYPM-----EAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP~-----~pP~v~f~t 84 (105)
.|.|.|+-+.|..||. .||.|+|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3889999999999998 899998874
No 45
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=60.75 E-value=16 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred CEEEEEEECCCCCCC-----CCCeEEEec
Q 034040 61 ETFELQVDFPEHYPM-----EAPQVIFLP 84 (105)
Q Consensus 61 g~f~~~i~fp~~yP~-----~pP~v~f~t 84 (105)
|.|.|.-++|--||. .||.|+|.-
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 889999999999995 899988874
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=55.80 E-value=18 Score=27.47 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.8
Q ss_pred CEEEEEEECCCCCCCCCCeEEEecCC
Q 034040 61 ETFELQVDFPEHYPMEAPQVIFLPPA 86 (105)
Q Consensus 61 g~f~~~i~fp~~yP~~pP~v~f~tp~ 86 (105)
-.+.+.+..++.||...|+|+...||
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nPR 70 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNPR 70 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCCC
Confidence 45678889999999999999999885
No 47
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=55.74 E-value=8.8 Score=23.05 Aligned_cols=15 Identities=20% Similarity=0.218 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHH
Q 034040 13 SKIASNRLQKELVEW 27 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l 27 (105)
.-..+|||++||+=|
T Consensus 57 ~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 57 VLSQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCC
Confidence 346789999999866
No 48
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=54.60 E-value=6.7 Score=28.34 Aligned_cols=16 Identities=38% Similarity=0.856 Sum_probs=12.6
Q ss_pred CCccc---cccCCCceEEe
Q 034040 86 APLHP---HIYSNGHICLG 101 (105)
Q Consensus 86 ~i~HP---nv~~~G~iCl~ 101 (105)
..||. ||+++|+||+.
T Consensus 132 ~L~~aPffNV~~~G~VC~G 150 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAG 150 (228)
T ss_pred eeccCCcCccCCCCeEeeC
Confidence 35554 99999999985
No 49
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=52.87 E-value=4.5 Score=34.22 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCCCCCCeEEEec
Q 034040 62 TFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 62 ~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
+=-++|.+|.+||..+|.+.+..
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp -----------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccH
Confidence 34578999999999999987754
No 50
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=51.53 E-value=6.9 Score=20.05 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=9.7
Q ss_pred CccccccCCCc
Q 034040 87 PLHPHIYSNGH 97 (105)
Q Consensus 87 i~HPnv~~~G~ 97 (105)
-|||.++.+|+
T Consensus 7 ~yHP~~~~~G~ 17 (36)
T smart00107 7 KYHPSFWVDGK 17 (36)
T ss_pred ccCCCceeCCe
Confidence 49999999887
No 51
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=51.50 E-value=28 Score=23.09 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=23.8
Q ss_pred cCCccceEEEEEcCCCCCCC-CCEEEEEEECC
Q 034040 40 TDNLQRWIIEVNGAPGTLYA-NETFELQVDFP 70 (105)
Q Consensus 40 ~~~~~~w~~~i~gp~~tpy~-gg~f~~~i~fp 70 (105)
.+|...|.|++.|++||+.. +..|-+++.|.
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF~ 75 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIFY 75 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeHH
Confidence 67888999999999998884 55666665553
No 52
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=50.67 E-value=13 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.530 Sum_probs=24.5
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
.+||.|-+.- ..--|+.|..+|+.|+++|.
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~ 67 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLA 67 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECc
Confidence 5799988872 15678999999999999985
No 53
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=50.19 E-value=5.7 Score=19.82 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=7.6
Q ss_pred CccccccCCCc
Q 034040 87 PLHPHIYSNGH 97 (105)
Q Consensus 87 i~HPnv~~~G~ 97 (105)
.|||.++.+|+
T Consensus 2 ~yHPg~~~~g~ 12 (32)
T PF00779_consen 2 KYHPGAWRGGK 12 (32)
T ss_dssp EE-SS-EETTC
T ss_pred CcCCCcccCCc
Confidence 48999999887
No 54
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=49.30 E-value=77 Score=21.09 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC--CCccccccCCCce
Q 034040 22 KELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP--APLHPHIYSNGHI 98 (105)
Q Consensus 22 ~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp--~i~HPnv~~~G~i 98 (105)
.++++.....+.|+.+.- .+. +.+ .| . .+.-..+ --..||.+.|.-. +--|+.+..+|+.
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~~------------~~~-~g-~-tvss~~s--vS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDGP------------AGR-AG-F-TASAVCS--VTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeecC------------CCc-ee-E-EEEeEee--ccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 467777788888887654 211 111 11 1 2222222 2367999988731 4678899999999
Q ss_pred EEecCC
Q 034040 99 CLGIAS 104 (105)
Q Consensus 99 Cl~iL~ 104 (105)
++++|.
T Consensus 67 ~VnvL~ 72 (156)
T TIGR03615 67 CVNTLA 72 (156)
T ss_pred EEEECc
Confidence 999985
No 55
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=48.43 E-value=51 Score=24.33 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=31.6
Q ss_pred CCccceEEEEEcCCCCCCCC---CEEEEEEEC-----CCCCCCCCCeEEEecCCCccc
Q 034040 41 DNLQRWIIEVNGAPGTLYAN---ETFELQVDF-----PEHYPMEAPQVIFLPPAPLHP 90 (105)
Q Consensus 41 ~~~~~w~~~i~gp~~tpy~g---g~f~~~i~f-----p~~yP~~pP~v~f~tp~i~HP 90 (105)
.|..-|++.....+....+| ..|+.++.+ ..|-||+||+|..++ +-|..
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILS-K~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILS-KQFTE 156 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeee-cccCc
Confidence 35556777776544334444 334455555 378899999999999 76643
No 56
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=48.40 E-value=30 Score=25.79 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.8
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-++|.-|| ..||.|+|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 489999999999997 6899999984
No 57
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=47.92 E-value=16 Score=24.97 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC--CCccccccCCC
Q 034040 20 LQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP--APLHPHIYSNG 96 (105)
Q Consensus 20 l~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp--~i~HPnv~~~G 96 (105)
+..++++.....+.|+.+.- .++-...=+++. -...+. .+||.|-+.-. .--|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~~~~~G~Tvs-----------s~~SvS------ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGDAGRCGITAT-----------AVCSVT------DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecCCCcEEEEEE-----------EEEEeE------cCCCEEEEEECCCCchhHHHHhCC
Confidence 45678888888889988765 211011111111 011222 46999888731 36788899999
Q ss_pred ceEEecCC
Q 034040 97 HICLGIAS 104 (105)
Q Consensus 97 ~iCl~iL~ 104 (105)
++|+++|.
T Consensus 69 ~F~VnvL~ 76 (170)
T PRK15486 69 KLCINVLN 76 (170)
T ss_pred eEEEEECh
Confidence 99999985
No 58
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=45.96 E-value=36 Score=24.39 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEe
Q 034040 60 NETFELQVDFPEHYPM-------EAPQVIFL 83 (105)
Q Consensus 60 gg~f~~~i~fp~~yP~-------~pP~v~f~ 83 (105)
.|.|.|.-+.|--||. .||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999974 89999995
No 59
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=45.32 E-value=37 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=21.9
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|.-+.|.-|| ..||.|+|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 489999999999998 5899999973
No 60
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=45.04 E-value=23 Score=23.97 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCCeEEEecC--CCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLPP--APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~tp--~i~HPnv~~~G~iCl~iL~ 104 (105)
+.||.|-+.-. +--++|+.++|+.|+++|+
T Consensus 44 ~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~ 75 (176)
T COG1853 44 LEPPLVLVCVNKSSDTWPNIEETGEFVVNVLS 75 (176)
T ss_pred CCCCEEEEEecCCcchhhhhhhcCEEEEEeCC
Confidence 46888888742 5678999999999999985
No 61
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=44.91 E-value=38 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.3
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEe
Q 034040 60 NETFELQVDFPEHYPM-------EAPQVIFL 83 (105)
Q Consensus 60 gg~f~~~i~fp~~yP~-------~pP~v~f~ 83 (105)
.|.|.|.-++|--||. .||.|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999975 89999995
No 62
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=44.83 E-value=39 Score=25.21 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-++|..|| ..||.|+|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 489999999998887 5889999874
No 63
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=44.62 E-value=65 Score=22.12 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHhhCC----CCCeEEeecCCccceEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 21 QKELVEWQVNP----PAGFKHKVTDNLQRWIIEVNG-APGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 21 ~~E~~~l~~~~----~~~~~~~~~~~~~~w~~~i~g-p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
.+|++.+.... ..|+.+.. .+.=... .|++ |.-.|- --...++|.| .+|-..||+|.|+.|
T Consensus 11 dR~V~~~~~~~~a~r~rgwfLiq-a~fP~~~-~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 11 DRQVGRFRPRADAYRMRGWFLIQ-ASFPTAD-VIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHhhhhhhhhHhhhcCeEEEE-ccCceEE-EEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 44555554432 24665544 2222223 3444 443342 2236788888 789999999999975
No 64
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=43.10 E-value=41 Score=25.05 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-+.|.-|| ..||.|+|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 489999999999996 6789999874
No 65
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.96 E-value=52 Score=23.14 Aligned_cols=43 Identities=9% Similarity=0.025 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCC
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPG 55 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~ 55 (105)
..-..+||++|++.+.+.--..++..| -+..-.+.+.+..-.|
T Consensus 117 ~~k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 117 RVKDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD 160 (203)
T ss_pred chhHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC
Confidence 355689999999999998888888887 4555778888876555
No 66
>PF15572 Imm26: Immunity protein 26
Probab=41.53 E-value=36 Score=21.35 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=19.6
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 53 APGTLYANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 53 p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
+.+..+.|.+|++ |..||++ +.|.|+-
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFmV 33 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFMV 33 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEEE
Confidence 4556788888877 5559988 7777774
No 67
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=41.09 E-value=20 Score=20.49 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhh
Q 034040 16 ASNRLQKELVEWQV 29 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~ 29 (105)
--+||++||+++--
T Consensus 35 Dr~rL~kEL~d~D~ 48 (59)
T PF12065_consen 35 DRQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHHccc
Confidence 34689999999844
No 68
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.37 E-value=41 Score=25.74 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=29.4
Q ss_pred CCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040 57 LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (105)
Q Consensus 57 py~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn 91 (105)
||.|-..+-.|.|...||..||-+.|..-.-|+|-
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 68888999999999999999999999731347774
No 69
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=39.63 E-value=65 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=30.4
Q ss_pred cceEEEEEcCCC-CCCCCCEEEEEEE---CCCCCCCCCCeEEEec
Q 034040 44 QRWIIEVNGAPG-TLYANETFELQVD---FPEHYPMEAPQVIFLP 84 (105)
Q Consensus 44 ~~w~~~i~gp~~-tpy~gg~f~~~i~---fp~~yP~~pP~v~f~t 84 (105)
..|+..|.|-.| .-|++|.+++.+. |...+ .+.|+|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 479999999444 4888999999886 54444 4677999975
No 70
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=38.82 E-value=30 Score=27.78 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=20.0
Q ss_pred CCCCEEEEEEECC-----CCCCCCCCeEEEecCCCcccccc
Q 034040 58 YANETFELQVDFP-----EHYPMEAPQVIFLPPAPLHPHIY 93 (105)
Q Consensus 58 y~gg~f~~~i~fp-----~~yP~~pP~v~f~tp~i~HPnv~ 93 (105)
-.||.|++.|++- ++||. .||||+-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~----------GIFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPD----------GIFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCC----------ccccCcHh
Confidence 4688999999994 55665 79999643
No 71
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=38.56 E-value=57 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-+.|.-|| ..||.|+|.-
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~V 192 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYKV 192 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEEE
Confidence 489999999999997 4789998873
No 72
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=37.68 E-value=98 Score=18.99 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=19.5
Q ss_pred CCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 58 YANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 58 y~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
-||.-+.|.-.-|+.|| .|.|.+.++
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35666777777788888 688988873
No 73
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=36.20 E-value=39 Score=27.78 Aligned_cols=28 Identities=29% Similarity=0.727 Sum_probs=22.8
Q ss_pred CCCCCEEEEEEECCCCCCC---CCCeEEEecC
Q 034040 57 LYANETFELQVDFPEHYPM---EAPQVIFLPP 85 (105)
Q Consensus 57 py~gg~f~~~i~fp~~yP~---~pP~v~f~tp 85 (105)
||.=|.|.+ +++|+.||+ +-|-+.|+||
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecc
Confidence 677777776 457899996 6899999998
No 74
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=35.28 E-value=72 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=25.7
Q ss_pred CCCCCCEEEEEEECCCCCCCCC--CeEEEec
Q 034040 56 TLYANETFELQVDFPEHYPMEA--PQVIFLP 84 (105)
Q Consensus 56 tpy~gg~f~~~i~fp~~yP~~p--P~v~f~t 84 (105)
+.+.|..|++-|..|++||..- |.|.|+.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 4788999999999999999877 9998885
No 75
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=34.67 E-value=55 Score=16.06 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=12.9
Q ss_pred cccccHHHHHHHHHHHHHH
Q 034040 9 RKALSKIASNRLQKELVEW 27 (105)
Q Consensus 9 ~~~~s~~~~~Rl~~E~~~l 27 (105)
..-.+....++|++|+++.
T Consensus 11 TnG~sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 11 TNGKSPRLARLIRKEIERL 29 (30)
T ss_dssp ESSS-HHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHh
Confidence 3445667788889998865
No 76
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=33.01 E-value=1.7e+02 Score=20.83 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCC-------------------CC--
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH-------------------YP-- 74 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~-------------------yP-- 74 (105)
+..||.+.++++++.. .+..+-|.+.+....+.-|-| |.|.+.|.++ |-
T Consensus 10 ~~eR~~e~~~~~k~~L--------~~a~~GW~~~yyp~~~~~~GG--y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~~ 79 (235)
T PF14135_consen 10 PAERINEALAEYKKIL--------TSAPNGWKLEYYPKTDQSYGG--YTFLMKFDDDGKVTMASDFDSASTPSTSSYRLK 79 (235)
T ss_pred HHHHHHHHHHHHHHHH--------hcCCCceEEEEECCCCccCCc--EEEEEEECCCCeEEEEEccCCCCceeeEEEEEe
Confidence 4567766666554421 122244677766433322333 6665555433 22
Q ss_pred -CCCCeEEEecCC-CccccccCCC
Q 034040 75 -MEAPQVIFLPPA-PLHPHIYSNG 96 (105)
Q Consensus 75 -~~pP~v~f~tp~-i~HPnv~~~G 96 (105)
..-|.+.|.|=. +.|-..++++
T Consensus 80 ~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 80 QDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred cCCceEEEEEeCCceEEEccCCCc
Confidence 234888888733 5676666543
No 77
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=32.95 E-value=78 Score=23.26 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-+.|.-|| ..||.|+|.-
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 198 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFMV 198 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 389999999999886 5789998873
No 78
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=32.58 E-value=1.1e+02 Score=25.50 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-----cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCC
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKV-----TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~-----~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~p 77 (105)
-.-|++|++.| +.-+.+.+ ++| ..+ +|.--+|-=+- -+++.+|.+||...
T Consensus 621 p~vlqgElarL----D~kF~v~ld~~~~~nN--~I~-liCklddk~lP----Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 621 PEVLQGELARL----DAKFEVDLDHQRHDNN--HII-LICKLDDKQLP----PLRLSVPTTYPAQN 675 (742)
T ss_pred hHHHHHHHHhh----ccceeecCCcccccCC--eeE-EEEEecCCCCC----Ceeeeccccccccc
Confidence 45678899988 45666665 223 222 23322332222 38999999999755
No 79
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.84 E-value=51 Score=18.36 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhC
Q 034040 14 KIASNRLQKELVEWQVN 30 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~ 30 (105)
..+.+|+++|++++++.
T Consensus 47 r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678888888888764
No 80
>PF05800 GvpO: Gas vesicle synthesis protein GvpO; InterPro: IPR008634 This family consists of archaeal GvpO proteins which are required for gas vesicle synthesis []. The family also contain related sequences from bacteria.; GO: 0031412 gas vesicle organization
Probab=31.24 E-value=1.4e+02 Score=18.81 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEc
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNG 52 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~g 52 (105)
...+.++.+..+++|....+.++.... .+| ..|.+.+..
T Consensus 19 ~~~a~~~A~~~~~eL~g~~~e~V~~~~~~ed-gGW~v~VEV 58 (100)
T PF05800_consen 19 AAEAARRAREQLAELTGHEPEGVSSVERTED-GGWRVVVEV 58 (100)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEeecCC-CCeEEEEEE
Confidence 345666667789999888888887665 333 589988875
No 81
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=31.24 E-value=45 Score=26.43 Aligned_cols=24 Identities=33% Similarity=0.629 Sum_probs=18.9
Q ss_pred CCCEEEEEEECC-----CCCCCCCCeEEEecCCCccccc
Q 034040 59 ANETFELQVDFP-----EHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 59 ~gg~f~~~i~fp-----~~yP~~pP~v~f~tp~i~HPnv 92 (105)
.||.|++.|++- +.||. .||||+=
T Consensus 362 R~~~yELDlVLRnNrT~e~yPd----------GIFHPH~ 390 (503)
T COG4468 362 RGGLYELDLVLRNNRTSEEYPD----------GIFHPHQ 390 (503)
T ss_pred cCCeeEEEEEEecCCccccCCC----------cccCCcH
Confidence 489999999985 55775 7899964
No 82
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=30.53 E-value=50 Score=26.61 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=19.9
Q ss_pred CCCCEEEEEEECC-----CCCCCCCCeEEEecCCCcccccc
Q 034040 58 YANETFELQVDFP-----EHYPMEAPQVIFLPPAPLHPHIY 93 (105)
Q Consensus 58 y~gg~f~~~i~fp-----~~yP~~pP~v~f~tp~i~HPnv~ 93 (105)
.+||.|++.|+|- ++||. .||||+-+
T Consensus 359 ~~~~~yElDLVLRnN~Tsee~P~----------GIFHPH~e 389 (493)
T PRK05270 359 RRGGKYELDLVLRNNRTSEEHPD----------GIFHPHPE 389 (493)
T ss_pred ecCCeeEEEEEeecCCCccccCC----------ccccCchh
Confidence 5789999999995 45664 78998643
No 83
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=29.66 E-value=94 Score=22.71 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-+.|.-|| ..||.|+|.-
T Consensus 151 ~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 193 (247)
T cd03462 151 DGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFKV 193 (247)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 588999999998885 5789999874
No 84
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=29.64 E-value=40 Score=23.34 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=16.2
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFL 83 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~ 83 (105)
.|.|.|+-+.|.-|| ..||.|+|.
T Consensus 83 ~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~~g~~~~Rp~HIH~~ 124 (183)
T PF00775_consen 83 DGRYSFRTIKPGPYPIPDDGPVGFLLRALGRHPWRPAHIHFK 124 (183)
T ss_dssp TSEEEEEEE----EEESTTSHHHHHHHHTTTTEEE-SEEEEE
T ss_pred CCEEEEEeeCCCCCCCCCccHHHHHHhhhccCCCcCCeEEEE
Confidence 488999999999998 578998887
No 85
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=27.89 E-value=86 Score=17.58 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=12.0
Q ss_pred EEEEEEECCCCCCCCCCeEEEe
Q 034040 62 TFELQVDFPEHYPMEAPQVIFL 83 (105)
Q Consensus 62 ~f~~~i~fp~~yP~~pP~v~f~ 83 (105)
.+...|.|++.|.. ||+|.+-
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEE
Confidence 46788999999985 9998554
No 86
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=27.60 E-value=42 Score=22.97 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=8.2
Q ss_pred CccccccCCCceE
Q 034040 87 PLHPHIYSNGHIC 99 (105)
Q Consensus 87 i~HPnv~~~G~iC 99 (105)
+|||+.|. |.+|
T Consensus 51 iYhP~~Dc-GD~V 62 (165)
T KOG3203|consen 51 IYHPSTDC-GDHV 62 (165)
T ss_pred ccCCccCC-CCEE
Confidence 78998873 4444
No 87
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=27.40 E-value=1.2e+02 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCC
Q 034040 12 LSKIASNRLQKELVEWQVNPPAG 34 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~ 34 (105)
.+..+..||.+|+++..-++..|
T Consensus 24 k~~krr~rLl~Ef~rR~GDpn~G 46 (118)
T PF09929_consen 24 KNKKRRSRLLREFQRRSGDPNVG 46 (118)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCC
Confidence 36778899999999998887665
No 88
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=1.7e+02 Score=23.17 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.1
Q ss_pred EEEEEEECCCCCCC
Q 034040 62 TFELQVDFPEHYPM 75 (105)
Q Consensus 62 ~f~~~i~fp~~yP~ 75 (105)
...+.+.||.+|+.
T Consensus 210 ~k~i~vtFP~dy~a 223 (441)
T COG0544 210 EKDIKVTFPEDYHA 223 (441)
T ss_pred eeEEEEEcccccch
Confidence 34588999999985
No 89
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=25.16 E-value=73 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.773 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCCCCCCEEEEE
Q 034040 45 RWIIEVNGAPGTLYANETFELQ 66 (105)
Q Consensus 45 ~w~~~i~gp~~tpy~gg~f~~~ 66 (105)
.|.+.|.|-+ .|+|-.|.|.
T Consensus 2 kWkC~iCg~~--I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICGKP--IYEGQLFTFT 21 (101)
T ss_pred ceEEEecCCe--eeecceEEEe
Confidence 6999999744 8999999884
No 90
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=62 Score=24.66 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCEEEEEEECC-----CCCCCCCCeEEEecCCCccccccCCCce
Q 034040 60 NETFELQVDFP-----EHYPMEAPQVIFLPPAPLHPHIYSNGHI 98 (105)
Q Consensus 60 gg~f~~~i~fp-----~~yP~~pP~v~f~tp~i~HPnv~~~G~i 98 (105)
|.+.-++..|= +.-+...|+|.|.- .+|||||-+.-+.
T Consensus 287 g~~ll~ddsf~ha~~~dgs~eds~rvV~~V-~lwhpevq~~~r~ 329 (334)
T KOG3696|consen 287 GKCLLYDDSFLHALQHDGSSEDSPRVVFTV-DLWHPEVQPAERQ 329 (334)
T ss_pred cceeEeechhhcccccCCCcccCceEEEEE-eccCccccccccc
Confidence 33344455442 33445679999999 8999999765443
No 91
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=24.77 E-value=38 Score=22.69 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=13.8
Q ss_pred EEEEEEECCCCCCCCCCe
Q 034040 62 TFELQVDFPEHYPMEAPQ 79 (105)
Q Consensus 62 ~f~~~i~fp~~yP~~pP~ 79 (105)
.|+-+-.+|.+||+.+|.
T Consensus 103 ~YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 103 EYRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHHhcCCCCCCCccchH
Confidence 355666899999998874
No 92
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=24.29 E-value=1.2e+02 Score=15.96 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=14.7
Q ss_pred ccccHHHHHHHHHHHHHHhhC
Q 034040 10 KALSKIASNRLQKELVEWQVN 30 (105)
Q Consensus 10 ~~~s~~~~~Rl~~E~~~l~~~ 30 (105)
.-.+..+.|.|-+|+..+.++
T Consensus 22 Pvp~~~alkELIeELvNITqn 42 (43)
T PF03487_consen 22 PVPSSTALKELIEELVNITQN 42 (43)
T ss_dssp -S-HHHHHHHHHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHHhhccC
Confidence 334567899999999888654
No 93
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=23.30 E-value=1.7e+02 Score=22.91 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEE---------EEEECCCCCCCCCCeEEEecCCC
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFE---------LQVDFPEHYPMEAPQVIFLPPAP 87 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~---------~~i~fp~~yP~~pP~v~f~tp~i 87 (105)
.-.+..|.++|....|..-.+...+. -...+.|. |-- -+-.+.|+ +. .|...|++.||.++... .|
T Consensus 247 n~~ne~Ev~Rir~eHPdd~~~vv~~~-~RvkG~L~-vsR-AfGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP-~i 321 (390)
T KOG0700|consen 247 NASNEDEVRRIRSEHPDDPHIVVNKH-WRVKGILQ-VSR-AFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEP-SI 321 (390)
T ss_pred ccccHHHHHHHHHhCCCCcceEeecc-ceeeEEEE-eee-eccceeecchhhccchhHh-hcCCCCCCCCCceeccc-eE
Confidence 34567888888887776554444221 11122233 111 23333333 11 67888999999999987 78
Q ss_pred ccccccCCCc
Q 034040 88 LHPHIYSNGH 97 (105)
Q Consensus 88 ~HPnv~~~G~ 97 (105)
+|--+.++-+
T Consensus 322 ~~HrL~p~Dk 331 (390)
T KOG0700|consen 322 THHKLTPNDK 331 (390)
T ss_pred EEEEcCCCCe
Confidence 8777666544
No 94
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=22.73 E-value=2.4e+02 Score=20.92 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=38.9
Q ss_pred CccceEEEEEcCCCCCC---CCCEEEEEEECCCCC-CCCCCeEEEe------------cCCCccc-cccC-CCceEEecC
Q 034040 42 NLQRWIIEVNGAPGTLY---ANETFELQVDFPEHY-PMEAPQVIFL------------PPAPLHP-HIYS-NGHICLGIA 103 (105)
Q Consensus 42 ~~~~w~~~i~gp~~tpy---~gg~f~~~i~fp~~y-P~~pP~v~f~------------tp~i~HP-nv~~-~G~iCl~iL 103 (105)
...--.+++.|+.-..+ ..+.-+++|.||+.- +...|-+... . |.|-+ +++. .|++|+++.
T Consensus 29 sP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~-R~YTiR~~d~~~~e~~vDfV 107 (265)
T COG2375 29 SPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQ-RTYTIRAVDAAAGELDVDFV 107 (265)
T ss_pred CCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCc-ccceeeeecccccEEEEEEE
Confidence 44566777777666555 456668999997553 2222222222 3 78888 5775 899999864
No 95
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=22.43 E-value=2.5e+02 Score=18.78 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee--cCCccceEE
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKV--TDNLQRWII 48 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~ 48 (105)
...++.|+++..+..+.. .+.. =||..+|++
T Consensus 61 ~~~Vl~Ei~~CrkayP~~-yIRl~gFDn~rq~Q~ 93 (138)
T CHL00130 61 PAAVMFEINECRKQKPNG-YIKVNAFDASRGVES 93 (138)
T ss_pred HHHHHHHHHHHHHHCCCc-EEEEEEeeCCCcEEE
Confidence 356789999998876543 3444 688888888
No 96
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.49 E-value=1.2e+02 Score=18.49 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 034040 14 KIASNRLQKELVEWQV 29 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~ 29 (105)
..+.+||.||+....+
T Consensus 6 t~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999877654
No 97
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=21.42 E-value=1.6e+02 Score=17.22 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=15.5
Q ss_pred CccceEEEEEcCCCCCCCCCEEEEEEECCC
Q 034040 42 NLQRWIIEVNGAPGTLYANETFELQVDFPE 71 (105)
Q Consensus 42 ~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~ 71 (105)
.-.+|+|.-. . +|.|++.|.+|+
T Consensus 3 ~~~dW~Vsrt-~------dGdYrL~itcp~ 25 (71)
T PF11619_consen 3 SAADWEVSRT-L------DGDYRLVITCPK 25 (71)
T ss_dssp TT-S-EEEEE-T------TTCEEEEEEESS
T ss_pred ccccceeeec-c------CCceEEEEecCc
Confidence 4467888776 2 457999999885
No 98
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=20.94 E-value=2.4e+02 Score=17.97 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=23.2
Q ss_pred cccccHHHHHHHHHHHHHHhhCCCCCeEEee
Q 034040 9 RKALSKIASNRLQKELVEWQVNPPAGFKHKV 39 (105)
Q Consensus 9 ~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~ 39 (105)
+.+|+...+++...|++.+.+....-+.+..
T Consensus 8 SGSis~~~l~~fl~ev~~i~~~~~~~v~vi~ 38 (126)
T PF09967_consen 8 SGSISDEELRRFLSEVAGILRRFPAEVHVIQ 38 (126)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4455777899999999999997655555544
No 99
>PF06191 DUF995: Protein of unknown function (DUF995); InterPro: IPR009337 This is a family of uncharacterised Proteobacteria proteins.
Probab=20.81 E-value=55 Score=21.96 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.1
Q ss_pred cccCCCceEEec
Q 034040 91 HIYSNGHICLGI 102 (105)
Q Consensus 91 nv~~~G~iCl~i 102 (105)
.|+.+|++|++.
T Consensus 76 ~Vt~~GklC~~a 87 (145)
T PF06191_consen 76 FVTDNGKLCFRA 87 (145)
T ss_pred EECCCCCEEEEe
Confidence 366789999874
No 100
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=20.56 E-value=1.2e+02 Score=19.18 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHhhCCC
Q 034040 13 SKIASNRLQKELVEWQVNPP 32 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~ 32 (105)
.....++|.||+.|+...+.
T Consensus 20 p~g~lkHl~kE~~E~~~~p~ 39 (100)
T PF04447_consen 20 PVGPLKHLSKEALEAEAAPG 39 (100)
T ss_pred cchHHHHHHHHHHHHHhCCC
Confidence 34678999999999988753
Done!