Query 034040
Match_columns 105
No_of_seqs 110 out of 1032
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zdn_A Ubiquitin-conjugating e 100.0 2.3E-38 7.9E-43 213.8 11.3 100 4-104 2-102 (158)
2 2ucz_A UBC7, ubiquitin conjuga 100.0 4.3E-37 1.5E-41 208.7 12.3 91 12-103 1-93 (165)
3 2a7l_A Hypothetical ubiquitin- 100.0 9.9E-38 3.4E-42 206.3 8.8 97 6-104 14-115 (136)
4 2e2c_A Ubiquitin conjugating e 100.0 2.7E-37 9.1E-42 208.1 10.9 90 14-104 8-98 (156)
5 2h2y_A Ubiquitin-conjugating e 100.0 6.2E-37 2.1E-41 202.4 12.4 89 15-104 20-110 (136)
6 1ayz_A UBC2, ubiquitin-conjuga 100.0 3.3E-37 1.1E-41 210.2 11.1 92 12-104 1-93 (169)
7 2fo3_A Ubiquitin-conjugating e 100.0 3.9E-37 1.3E-41 200.8 10.8 89 15-104 6-96 (125)
8 4gpr_A Ubiquitin-conjugating e 100.0 1.2E-36 4E-41 204.0 12.3 91 13-104 2-93 (151)
9 1yh2_A HSPC150 protein similar 100.0 1.3E-36 4.5E-41 207.1 12.5 91 13-104 2-93 (169)
10 2ayv_A Ubiquitin-conjugating e 100.0 8.2E-37 2.8E-41 207.7 11.4 97 7-104 13-110 (166)
11 2aak_A UBC1, ubiquitin conjuga 100.0 8.8E-37 3E-41 204.8 11.1 92 12-104 1-93 (152)
12 1yrv_A Ubiquitin-conjugating l 100.0 5.1E-37 1.7E-41 209.3 9.5 98 6-104 14-113 (169)
13 1i7k_A Ubiquitin-conjugating e 100.0 6.3E-37 2.2E-41 210.5 9.9 92 12-104 27-119 (179)
14 2c4o_A Ubiquitin-conjugating e 100.0 2.3E-36 7.8E-41 205.3 12.4 93 11-104 15-108 (165)
15 3h8k_A Ubiquitin-conjugating e 100.0 1.6E-36 5.6E-41 205.6 11.6 89 15-104 3-93 (164)
16 1z2u_A Ubiquitin-conjugating e 100.0 1.5E-36 5.1E-41 203.3 11.1 90 14-104 3-93 (150)
17 2c2v_B Ubiquitin-conjugating e 100.0 5.3E-37 1.8E-41 206.4 8.6 88 15-103 5-93 (154)
18 3rcz_B SUMO-conjugating enzyme 100.0 1.8E-36 6.3E-41 205.5 10.7 92 12-104 7-104 (163)
19 2gjd_A Ubiquitin-conjugating e 100.0 1.9E-36 6.4E-41 204.2 10.2 92 12-104 1-98 (157)
20 2awf_A Ubiquitin-conjugating e 100.0 2.5E-36 8.5E-41 206.3 10.8 92 12-104 14-107 (172)
21 2grr_A Ubiquitin-conjugating e 100.0 3E-36 1E-40 203.9 11.1 93 11-104 3-101 (161)
22 2bep_A Ubiquitin-conjugating e 100.0 5.6E-36 1.9E-40 202.2 11.9 94 10-104 3-101 (159)
23 3rz3_A Ubiquitin-conjugating e 100.0 4.3E-36 1.5E-40 206.9 11.4 90 14-104 6-97 (183)
24 2r0j_A Ubiquitin carrier prote 100.0 6.2E-36 2.1E-40 200.1 11.2 87 17-104 3-90 (149)
25 3fn1_B NEDD8-conjugating enzym 100.0 4.8E-36 1.6E-40 203.9 10.4 96 7-104 6-103 (167)
26 1jat_A Ubiquitin-conjugating e 100.0 3.5E-36 1.2E-40 202.5 8.6 88 16-104 6-94 (155)
27 3bzh_A Ubiquitin-conjugating e 100.0 1.7E-35 5.7E-40 205.6 11.8 90 14-104 47-137 (194)
28 1fxt_A Ubiquitin-conjugating e 100.0 1E-35 3.5E-40 199.0 9.1 88 16-104 2-92 (149)
29 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.9E-35 6.4E-40 205.2 10.5 91 13-104 30-135 (193)
30 2pwq_A Ubiquitin conjugating e 100.0 2.1E-35 7.3E-40 207.9 10.7 92 12-104 20-113 (216)
31 2a4d_A Ubiquitin-conjugating e 100.0 5.8E-35 2E-39 197.6 11.8 93 11-104 21-119 (160)
32 3e46_A Ubiquitin-conjugating e 100.0 7.4E-35 2.5E-39 209.2 11.9 96 8-104 50-150 (253)
33 3k9o_A Ubiquitin-conjugating e 100.0 3.6E-35 1.2E-39 204.7 9.8 92 12-104 2-98 (201)
34 2f4w_A Ubiquitin-conjugating e 100.0 1.4E-34 4.7E-39 200.0 10.8 98 1-104 3-101 (187)
35 1wzv_A Ubiquitin-conjugating e 100.0 9.1E-35 3.1E-39 195.5 9.3 87 15-103 4-92 (155)
36 2q0v_A Ubiquitin-conjugating e 100.0 1.9E-34 6.5E-39 194.4 9.9 92 11-103 17-116 (156)
37 2y9m_A Ubiquitin-conjugating e 100.0 3.6E-34 1.2E-38 195.6 11.2 94 11-104 2-109 (172)
38 2nvu_C NEDD8-conjugating enzym 100.0 4.4E-34 1.5E-38 196.5 9.7 91 10-104 21-113 (180)
39 4ds2_A Ubiquitin-conjugating e 100.0 6.1E-35 2.1E-39 198.5 5.2 92 11-103 4-110 (167)
40 2hlw_A Ubiquitin-conjugating e 100.0 3.9E-34 1.3E-38 195.2 8.9 91 13-104 33-129 (170)
41 1y8x_A Ubiquitin-conjugating e 100.0 7.3E-34 2.5E-38 192.1 9.7 87 14-104 5-93 (160)
42 1tte_A Ubiquitin-conjugating e 100.0 6.8E-35 2.3E-39 205.2 4.5 88 16-104 3-93 (215)
43 1jat_B Ubiquitin-conjugating e 100.0 1.1E-33 3.9E-38 187.1 10.0 88 15-103 6-101 (138)
44 1c4z_D UBCH7, ubiquitin conjug 100.0 4.3E-34 1.5E-38 192.0 7.1 88 15-104 2-91 (154)
45 2z5d_A Ubiquitin-conjugating e 100.0 1E-33 3.6E-38 194.4 7.8 85 15-103 25-110 (179)
46 2onu_A Ubiquitin-conjugating e 100.0 7.9E-34 2.7E-38 190.6 5.5 85 16-104 3-89 (152)
47 3ceg_A Baculoviral IAP repeat- 100.0 1.6E-32 5.4E-37 202.4 12.0 96 9-104 70-174 (323)
48 4ddg_A Ubiquitin-conjugating e 100.0 1.5E-32 5E-37 207.8 11.8 90 14-104 2-92 (399)
49 3o2u_A NEDD8-conjugating enzym 100.0 1.6E-32 5.5E-37 190.0 9.4 90 11-104 25-122 (190)
50 1yf9_A Ubiquitin carrier prote 100.0 8.6E-33 2.9E-37 188.7 7.8 86 15-104 12-98 (171)
51 1zuo_A Hypothetical protein LO 100.0 5.5E-33 1.9E-37 191.8 6.2 97 7-104 19-132 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 3E-28 1E-32 164.4 3.9 85 13-103 30-125 (172)
53 3kpa_A Probable ubiquitin fold 99.8 2.3E-21 7.7E-26 128.7 2.3 84 14-103 33-127 (168)
54 3r3q_A Suppressor protein STP2 99.6 7E-16 2.4E-20 104.1 5.9 86 18-104 31-134 (162)
55 3obq_A Tumor susceptibility ge 99.3 4E-12 1.4E-16 84.4 5.4 60 40-104 50-116 (146)
56 2day_A Ring finger protein 25; 96.9 0.014 4.8E-07 36.7 9.7 66 19-84 12-82 (128)
57 2ebm_A RWD domain-containing p 96.9 0.0059 2E-07 38.5 7.5 67 17-84 12-78 (128)
58 2yz0_A Serine/threonine-protei 96.7 0.035 1.2E-06 35.3 10.4 69 16-85 11-86 (138)
59 2daw_A RWD domain containing p 95.9 0.059 2E-06 35.2 7.9 68 13-84 12-98 (154)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.7 0.061 2.1E-06 34.0 7.5 67 17-84 12-86 (137)
61 2ebk_A RWD domain-containing p 94.9 0.046 1.6E-06 34.3 4.9 65 19-84 11-79 (128)
62 3zqs_A E3 ubiquitin-protein li 92.4 0.59 2E-05 31.7 6.9 60 18-88 4-65 (186)
63 2dax_A Protein C21ORF6; RWD do 92.0 0.1 3.4E-06 33.8 2.6 23 62-84 74-96 (152)
64 3u3c_B Paxillin LD2 peptide; 4 69.6 3.7 0.00013 18.4 2.0 21 15-35 5-25 (26)
65 2bum_A Protocatechuate 3,4-dio 62.0 8.8 0.0003 26.2 3.7 26 59-84 109-139 (209)
66 3pft_A Flavin reductase; desul 51.1 9.4 0.00032 24.4 2.3 30 75-104 42-73 (157)
67 2bum_B Protocatechuate 3,4-dio 44.9 14 0.00048 25.8 2.5 25 60-84 135-166 (241)
68 2d37_A Hypothetical NADH-depen 43.4 11 0.00037 24.7 1.7 30 75-104 60-91 (176)
69 3t63_M 3,4-PCD, protocatechuat 43.0 16 0.00053 25.6 2.5 25 60-84 134-165 (238)
70 2xsu_A Catechol 1,2 dioxygenas 42.4 16 0.00054 26.5 2.6 25 60-84 188-230 (312)
71 1tmx_A Hydroxyquinol 1,2-dioxy 41.5 17 0.00058 26.2 2.6 26 59-84 183-226 (293)
72 2azq_A Catechol 1,2-dioxygenas 41.4 17 0.00057 26.4 2.5 25 60-84 184-226 (311)
73 3t63_A 3,4-PCD, protocatechuat 40.9 19 0.00066 24.3 2.7 24 61-84 102-130 (200)
74 3n9t_A PNPC; phospholipid bind 40.0 18 0.00063 25.9 2.6 25 60-84 181-223 (290)
75 4dac_A Computationally designe 39.2 29 0.00099 15.6 2.5 16 14-29 7-22 (28)
76 2boy_A 3-chlorocatechol 1,2-di 38.4 21 0.0007 25.2 2.6 25 60-84 154-196 (254)
77 2jrw_A Cyclic extended PEP.1; 38.4 7.1 0.00024 17.4 0.1 13 77-90 7-19 (26)
78 1dmh_A 1,2-CTD, catechol 1,2-d 37.8 20 0.0007 26.0 2.5 25 60-84 187-229 (311)
79 3hhy_A 1,2-CTD, catechol 1,2-d 36.1 20 0.00069 25.6 2.2 25 60-84 183-225 (280)
80 2rf4_B DNA-directed RNA polyme 35.9 21 0.00072 21.1 1.9 15 13-27 60-74 (87)
81 2ecu_A Flavin reductase (HPAC) 35.5 8.6 0.00029 24.3 0.2 30 75-104 40-71 (149)
82 2ccv_A Helix pomatia agglutini 35.2 70 0.0024 19.0 4.3 25 59-84 27-51 (101)
83 3th1_A Chlorocatechol 1,2-diox 33.6 33 0.0011 24.2 3.0 24 60-83 151-192 (260)
84 4hx6_A Oxidoreductase; structu 33.5 11 0.00036 24.9 0.4 30 75-104 57-88 (185)
85 2qck_A Flavin reductase domain 33.0 12 0.00042 24.1 0.6 30 75-104 48-79 (167)
86 2r0x_A Possible flavin reducta 31.6 9.5 0.00032 24.3 -0.1 29 76-104 44-74 (158)
87 3g9r_A Fusion complex of HIV-1 30.5 47 0.0016 16.6 2.4 14 15-28 28-41 (42)
88 3mmg_A Nuclear inclusion prote 29.6 45 0.0015 23.3 3.1 22 65-86 83-104 (241)
89 1yoa_A Putative flavoprotein; 29.4 10 0.00034 24.1 -0.3 30 75-104 41-72 (159)
90 1m46_B IQ4, IQ4 motif from MYO 29.2 44 0.0015 14.7 2.2 14 15-28 8-21 (26)
91 1usc_A Putative styrene monoox 28.6 10 0.00036 24.6 -0.3 30 75-104 45-76 (178)
92 3o5u_A Chlorocatechol 1,2-diox 27.7 44 0.0015 23.5 2.8 25 59-83 155-198 (257)
93 3e4v_A NADH:FMN oxidoreductase 26.8 16 0.00056 23.9 0.4 30 75-104 45-76 (186)
94 1lvm_A Catalytic domain of the 26.8 50 0.0017 22.9 2.9 22 65-86 91-112 (229)
95 3bnk_A Flavoredoxin; protein-F 26.5 15 0.00051 24.3 0.2 30 75-104 42-73 (196)
96 2ys2_A Cytoplasmic tyrosine-pr 25.8 17 0.00059 19.2 0.3 12 86-97 13-24 (50)
97 1i0r_A Conserved hypothetical 25.6 10 0.00036 24.4 -0.7 30 75-104 37-68 (169)
98 3cb0_A 4-hydroxyphenylacetate 24.8 16 0.00054 23.6 0.0 29 76-104 55-85 (173)
99 3rh7_A Hypothetical oxidoreduc 24.4 28 0.00095 25.1 1.3 30 75-104 57-88 (321)
100 1rz1_A Phenol 2-hydroxylase co 24.2 14 0.00049 23.4 -0.2 29 76-104 42-72 (161)
101 3nfw_A Flavin reductase-like, 24.2 13 0.00046 25.2 -0.4 67 21-104 30-99 (210)
102 2e6i_A Tyrosine-protein kinase 23.9 25 0.00085 19.6 0.7 11 87-97 14-24 (64)
103 1eje_A FMN-binding protein; st 23.1 15 0.00052 24.1 -0.3 30 75-104 54-85 (192)
104 3cxj_A Uncharacterized protein 22.5 1.4E+02 0.0049 19.5 4.4 42 22-72 6-48 (165)
105 2vm9_A Discoidin-2, discoidin 21.3 2E+02 0.0069 19.6 5.7 33 50-83 169-204 (257)
106 2r6v_A Uncharacterized protein 21.2 17 0.00058 23.9 -0.3 30 75-104 55-86 (191)
107 3ra3_B P2F; coiled coil domain 21.2 71 0.0024 14.3 2.5 13 16-28 8-20 (28)
108 3k86_A Chlorophenol-4-monooxyg 21.1 13 0.00046 24.5 -0.9 29 76-104 58-88 (185)
109 3fge_A Putative flavin reducta 20.4 10 0.00036 25.2 -1.6 30 75-104 55-89 (203)
No 1
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-38 Score=213.76 Aligned_cols=100 Identities=25% Similarity=0.487 Sum_probs=91.1
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040 4 SSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF 82 (105)
Q Consensus 4 s~~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 82 (105)
|.+.+.+.++..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|
T Consensus 2 ~~~~~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 81 (158)
T 1zdn_A 2 SMNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYF 81 (158)
T ss_dssp ------CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred cccccccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEe
Confidence 445577789999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred ecCCCccccccCCCceEEecCC
Q 034040 83 LPPAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 83 ~tp~i~HPnv~~~G~iCl~iL~ 104 (105)
.| ++|||||+.+|+|||++|+
T Consensus 82 ~t-~i~HPnv~~~G~iCl~iL~ 102 (158)
T 1zdn_A 82 LT-KIFHPNVGANGEICVNVLK 102 (158)
T ss_dssp SS-CCCCTTBCTTSBBCHHHHT
T ss_pred cc-CcccCCCCCCCEEehhhcC
Confidence 99 7999999999999999884
No 2
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-37 Score=208.66 Aligned_cols=91 Identities=37% Similarity=0.775 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
|++.+.+||++|+++|+++++.|+++.+ + +|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| ++||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~H 79 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP-SILH 79 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCSC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC-CCcc
Confidence 4568899999999999999999999998 4 69999999999999999999999999999999999999999999 7999
Q ss_pred ccccCCCceEEecC
Q 034040 90 PHIYSNGHICLGIA 103 (105)
Q Consensus 90 Pnv~~~G~iCl~iL 103 (105)
|||+.+|+|||+||
T Consensus 80 PNv~~~G~iCl~iL 93 (165)
T 2ucz_A 80 PNIYPNGEVCISIL 93 (165)
T ss_dssp TTBCTTSBBCCGGG
T ss_pred CCCCCCCcEeehhh
Confidence 99999999999999
No 3
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.9e-38 Score=206.32 Aligned_cols=97 Identities=43% Similarity=0.924 Sum_probs=88.6
Q ss_pred CCCcccccHHHHHHHHHHHHHHhhCCCCCeEEe--e-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040 6 APSRKALSKIASNRLQKELVEWQVNPPAGFKHK--V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF 82 (105)
Q Consensus 6 ~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~--~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 82 (105)
......|+.. .+||++|+++|++++++|+.+. + ++|++.|+++|.||+|||||||.|+++|.||++||++||+|+|
T Consensus 14 ~~~~~~Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F 92 (136)
T 2a7l_A 14 LVPRGSMASM-QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF 92 (136)
T ss_dssp CCCGGGGTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEE
T ss_pred cccchhccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEE
Confidence 3455666654 4999999999999999999875 5 7899999999999999999999999999999999999999999
Q ss_pred ecCCCc--cccccCCCceEEecCC
Q 034040 83 LPPAPL--HPHIYSNGHICLGIAS 104 (105)
Q Consensus 83 ~tp~i~--HPnv~~~G~iCl~iL~ 104 (105)
.| ++| ||||+.+|+|||++|+
T Consensus 93 ~T-~i~~~HPNV~~~G~ICL~iL~ 115 (136)
T 2a7l_A 93 TG-ENIPVHPHVYSNGHICLSILT 115 (136)
T ss_dssp ES-SCCCCBTTBCTTCBBCCGGGT
T ss_pred eC-CCcCCCccCCCCCeEEchhcC
Confidence 99 798 9999999999999984
No 4
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-37 Score=208.12 Aligned_cols=90 Identities=32% Similarity=0.637 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| ++|||||
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv 86 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT-PCWHPNV 86 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeC-CcccCCC
Confidence 35789999999999999999999998 789999999999999999999999999999999999999999999 7999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+.+|+|||++|+
T Consensus 87 ~~~G~iCl~iL~ 98 (156)
T 2e2c_A 87 DQSGNICLDILK 98 (156)
T ss_dssp CTTCBBCCGGGT
T ss_pred ccCceEECcccc
Confidence 999999999984
No 5
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=6.2e-37 Score=202.40 Aligned_cols=89 Identities=42% Similarity=0.837 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC-ccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP-LHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i-~HPnv 92 (105)
.+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++ |||||
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~~HPnv 98 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQ-KPPKHTHV 98 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-SCCCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeC-CCCCCCcC
Confidence 5789999999999999999999988 889999999999999999999999999999999999999999999 66 99999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+.+|+|||++|+
T Consensus 99 ~~~G~ICl~iL~ 110 (136)
T 2h2y_A 99 YSNGDICLSVLG 110 (136)
T ss_dssp CTTCCBCCGGGT
T ss_pred CCCCEEECcccc
Confidence 999999999985
No 6
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-37 Score=210.18 Aligned_cols=92 Identities=35% Similarity=0.682 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP 90 (105)
|++.+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t-~i~HP 79 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS-EMFHP 79 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccccc-CCccC
Confidence 3446789999999999999999999998 889999999999999999999999999999999999999999999 79999
Q ss_pred cccCCCceEEecCC
Q 034040 91 HIYSNGHICLGIAS 104 (105)
Q Consensus 91 nv~~~G~iCl~iL~ 104 (105)
||+.+|+|||++|+
T Consensus 80 NI~~~G~ICl~iL~ 93 (169)
T 1ayz_A 80 NVYANGEICLDILQ 93 (169)
T ss_dssp TBCTTSBBCCGGGT
T ss_pred CCCCCCeEeehhhc
Confidence 99999999999985
No 7
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-37 Score=200.79 Aligned_cols=89 Identities=43% Similarity=0.842 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC-ccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP-LHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i-~HPnv 92 (105)
.+.+||++|+++++++++.|+.+.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++ |||||
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~~HPnv 84 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ-KPPKHTHV 84 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-SCCCBTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeC-CCCCCCcC
Confidence 4679999999999999999999988 889999999999999999999999999999999999999999999 66 99999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+.+|+|||++|+
T Consensus 85 ~~~G~iCl~iL~ 96 (125)
T 2fo3_A 85 YSNGDICLSLLG 96 (125)
T ss_dssp CTTSBBCCGGGT
T ss_pred CCCCEEEchhcC
Confidence 999999999984
No 8
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.2e-36 Score=204.05 Aligned_cols=91 Identities=37% Similarity=0.690 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn 91 (105)
+..+.+||++|+++|+++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPn 80 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMT-KVYHPN 80 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEec-Ccccce
Confidence 457899999999999999999999999 889999999999999999999999999999999999999999999 799999
Q ss_pred ccCCCceEEecCC
Q 034040 92 IYSNGHICLGIAS 104 (105)
Q Consensus 92 v~~~G~iCl~iL~ 104 (105)
|+.+|+||+++|+
T Consensus 81 v~~~G~iCl~iL~ 93 (151)
T 4gpr_A 81 INKNGVICLDILK 93 (151)
T ss_dssp BCTTCBBCCGGGT
T ss_pred ECCCCEEEccccc
Confidence 9999999999984
No 9
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-36 Score=207.14 Aligned_cols=91 Identities=35% Similarity=0.623 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn 91 (105)
+..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPN 80 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT-PIYHPN 80 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeec-CCcccc
Confidence 457899999999999999999999999 889999999999999999999999999999999999999999999 799999
Q ss_pred ccCCCceEEecCC
Q 034040 92 IYSNGHICLGIAS 104 (105)
Q Consensus 92 v~~~G~iCl~iL~ 104 (105)
|+.+|+|||++|+
T Consensus 81 v~~~G~iCl~iL~ 93 (169)
T 1yh2_A 81 IDSAGRICLDVLK 93 (169)
T ss_dssp BCTTCBBCCGGGS
T ss_pred CCcCCeEeccccc
Confidence 9999999999996
No 10
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=8.2e-37 Score=207.72 Aligned_cols=97 Identities=30% Similarity=0.564 Sum_probs=87.6
Q ss_pred CCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 7 PSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 7 ~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
+........+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|
T Consensus 13 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T- 91 (166)
T 2ayv_A 13 GRENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTT- 91 (166)
T ss_dssp ------CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-
T ss_pred ccccccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeecc-
Confidence 334445567899999999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCceEEecCC
Q 034040 86 APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 86 ~i~HPnv~~~G~iCl~iL~ 104 (105)
+||||||+.+|+|||++|+
T Consensus 92 ~i~HPNI~~~G~ICL~iL~ 110 (166)
T 2ayv_A 92 KIYHPNINSQGAICLDILK 110 (166)
T ss_dssp CCCBTTBCTTCBBCCGGGT
T ss_pred CCcCCcCCCCCeEEccccc
Confidence 7999999999999999985
No 11
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=8.8e-37 Score=204.77 Aligned_cols=92 Identities=35% Similarity=0.679 Sum_probs=87.6
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP 90 (105)
|++.+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| ++|||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HP 79 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS-RMFHP 79 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEec-CcccC
Confidence 3456789999999999999999999988 889999999999999999999999999999999999999999999 79999
Q ss_pred cccCCCceEEecCC
Q 034040 91 HIYSNGHICLGIAS 104 (105)
Q Consensus 91 nv~~~G~iCl~iL~ 104 (105)
||+.+|+|||++|+
T Consensus 80 nv~~~G~iCl~iL~ 93 (152)
T 2aak_A 80 NIYADGSICLDILQ 93 (152)
T ss_dssp TBCTTSBBCCGGGT
T ss_pred CCCCCCEEechhhc
Confidence 99999999999985
No 12
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.1e-37 Score=209.27 Aligned_cols=98 Identities=21% Similarity=0.516 Sum_probs=91.7
Q ss_pred CCCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 6 APSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 6 ~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
.-....|+..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|
T Consensus 14 ~~~~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T 93 (169)
T 1yrv_A 14 LVPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT 93 (169)
T ss_dssp -CCTTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred ccccCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecC
Confidence 3456678888999999999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred CCCccccc-cCCCceEEecCC
Q 034040 85 PAPLHPHI-YSNGHICLGIAS 104 (105)
Q Consensus 85 p~i~HPnv-~~~G~iCl~iL~ 104 (105)
+|||||| +.+|+|||++|+
T Consensus 94 -~i~HPNI~~~~G~ICL~iL~ 113 (169)
T 1yrv_A 94 -IPFHPNVDPHTGQPCIDFLD 113 (169)
T ss_dssp -CCCCTTBCTTTCCBCCHHHH
T ss_pred -CCccCcccCCCCeEeehhhc
Confidence 7999999 789999999984
No 13
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.3e-37 Score=210.46 Aligned_cols=92 Identities=34% Similarity=0.641 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP 90 (105)
++..+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| +||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-~i~HP 105 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT-PCYHP 105 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESS-CCCST
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEec-CCccC
Confidence 6778899999999999999999999998 789999999999999999999999999999999999999999999 79999
Q ss_pred cccCCCceEEecCC
Q 034040 91 HIYSNGHICLGIAS 104 (105)
Q Consensus 91 nv~~~G~iCl~iL~ 104 (105)
||+.+|+|||++|+
T Consensus 106 NV~~~G~ICL~iL~ 119 (179)
T 1i7k_A 106 NVDTQGNISLDILK 119 (179)
T ss_dssp TBCTTCBBCCGGGT
T ss_pred ccccCCeEEcccCc
Confidence 99999999999984
No 14
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=2.3e-36 Score=205.34 Aligned_cols=93 Identities=33% Similarity=0.629 Sum_probs=87.9
Q ss_pred cccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
.....+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|||
T Consensus 15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T-~i~H 93 (165)
T 2c4o_A 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT-RIYH 93 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCB
T ss_pred cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEec-CCcC
Confidence 34457899999999999999999999999 889999999999999999999999999999999999999999999 7999
Q ss_pred ccccCCCceEEecCC
Q 034040 90 PHIYSNGHICLGIAS 104 (105)
Q Consensus 90 Pnv~~~G~iCl~iL~ 104 (105)
|||+.+|+|||++|+
T Consensus 94 PnV~~~G~ICl~iL~ 108 (165)
T 2c4o_A 94 PNINSNGSICLDILR 108 (165)
T ss_dssp TTBCTTCBBCCGGGT
T ss_pred CcCCCCCeEeehhhc
Confidence 999999999999985
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.6e-36 Score=205.57 Aligned_cols=89 Identities=29% Similarity=0.607 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
.+.+||++|+++|+++++.|+++.+ + +|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| ++|||||
T Consensus 3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPNV 81 (164)
T 3h8k_A 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC-EMFHPNI 81 (164)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcC-CCccCCC
Confidence 5789999999999999999999988 4 49999999999999999999999999999999999999999999 7999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+.+|+|||++|+
T Consensus 82 ~~~G~iCl~iL~ 93 (164)
T 3h8k_A 82 YPDGRVCISILH 93 (164)
T ss_dssp CTTSBBCCGGGS
T ss_pred CCCCcEeeeccc
Confidence 999999999995
No 16
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.5e-36 Score=203.27 Aligned_cols=90 Identities=38% Similarity=0.695 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
..+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv 81 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT-RIYHPNI 81 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEec-CcccCcC
Confidence 35789999999999999999999998 889999999999999999999999999999999999999999999 7999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+.+|+|||++|+
T Consensus 82 ~~~G~iCl~iL~ 93 (150)
T 1z2u_A 82 NSNGSICLDILR 93 (150)
T ss_dssp CTTCBBCCGGGT
T ss_pred CCCCeEeecccc
Confidence 999999999985
No 17
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.3e-37 Score=206.35 Aligned_cols=88 Identities=31% Similarity=0.554 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~ 93 (105)
.+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||||+
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv~ 83 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT-KIYHPNVD 83 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeec-CcccCcCc
Confidence 4569999999999999999999999 889999999999999999999999999999999999999999999 79999999
Q ss_pred CCCceEEecC
Q 034040 94 SNGHICLGIA 103 (105)
Q Consensus 94 ~~G~iCl~iL 103 (105)
.+|+|||++|
T Consensus 84 ~~G~iCl~iL 93 (154)
T 2c2v_B 84 KLGRICLDIL 93 (154)
T ss_dssp TTCBBCCHHH
T ss_pred cCCeEEchhc
Confidence 9999999987
No 18
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-36 Score=205.47 Aligned_cols=92 Identities=34% Similarity=0.762 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-cC-----CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TD-----NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~-----~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
.|..+.+||+||+++|+++++.|+.+.+ ++ |++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|
T Consensus 7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t- 85 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP- 85 (163)
T ss_dssp --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC-
Confidence 4568899999999999999999999998 44 8999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCceEEecCC
Q 034040 86 APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 86 ~i~HPnv~~~G~iCl~iL~ 104 (105)
+||||||+.+|+|||++|+
T Consensus 86 ~i~HPnV~~~G~iCl~iL~ 104 (163)
T 3rcz_B 86 PLFHPNVYPSGTVCLSILN 104 (163)
T ss_dssp CCCSTTBCTTSBBCCGGGC
T ss_pred CCccCCCCCCCcEeccccC
Confidence 7999999999999999985
No 19
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.9e-36 Score=204.22 Aligned_cols=92 Identities=35% Similarity=0.738 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-c-----CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-----DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
|+..+.+||++|+++|+++++.|+.+.+ + +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t- 79 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA- 79 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT-
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC-
Confidence 3456889999999999999999999987 3 38999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCceEEecCC
Q 034040 86 APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 86 ~i~HPnv~~~G~iCl~iL~ 104 (105)
++|||||+.+|+|||++|+
T Consensus 80 ~i~HPnv~~~G~iCl~iL~ 98 (157)
T 2gjd_A 80 GFYHPNVYPSGTICLSILN 98 (157)
T ss_dssp TCCCTTBCTTSBBCCGGGC
T ss_pred CCccCCCCCCCcEeeeccc
Confidence 8999999999999999996
No 20
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2.5e-36 Score=206.33 Aligned_cols=92 Identities=33% Similarity=0.708 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
.+..+.+||+||+++|+++++.|+++.+ + +|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|||
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T-~i~H 92 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT-EIWH 92 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCC
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccC-CCcc
Confidence 3557899999999999999999999998 4 79999999999999999999999999999999999999999999 7999
Q ss_pred ccccCCCceEEecCC
Q 034040 90 PHIYSNGHICLGIAS 104 (105)
Q Consensus 90 Pnv~~~G~iCl~iL~ 104 (105)
|||+.+|+|||++|+
T Consensus 93 PNV~~~G~IClsiL~ 107 (172)
T 2awf_A 93 PNVDKNGDVCISILH 107 (172)
T ss_dssp TTBCTTCBBCCGGGS
T ss_pred CCCCCCCcEehhhcC
Confidence 999999999999985
No 21
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3e-36 Score=203.92 Aligned_cols=93 Identities=33% Similarity=0.670 Sum_probs=87.5
Q ss_pred cccHHHHHHHHHHHHHHhhCCCCCeEEee-c-----CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-T-----DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
.|+..+.+||++|+++|+++++.|+.+.+ + +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 82 (161)
T 2grr_A 3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP 82 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence 36778899999999999999999999987 3 58999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCceEEecCC
Q 034040 85 PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 85 p~i~HPnv~~~G~iCl~iL~ 104 (105)
++|||||+.+|+|||++|+
T Consensus 83 -~i~HPnv~~~G~iCl~iL~ 101 (161)
T 2grr_A 83 -PLFHPNVYPSGTVCLSILE 101 (161)
T ss_dssp -CCCSTTBCTTSBBCCGGGC
T ss_pred -CcccCCCCCCCeEeehhcC
Confidence 7999999999999999986
No 22
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=5.6e-36 Score=202.18 Aligned_cols=94 Identities=32% Similarity=0.600 Sum_probs=87.8
Q ss_pred ccccHHHHHHHHHHHHHHhhC---CCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 10 KALSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 10 ~~~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
+.|+..+.+||++|+++|+++ ++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|
T Consensus 3 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t- 81 (159)
T 2bep_A 3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT- 81 (159)
T ss_dssp -CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-
T ss_pred ccchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeC-
Confidence 467788999999999999985 578999998 889999999999999999999999999999999999999999999
Q ss_pred CCccccccC-CCceEEecCC
Q 034040 86 APLHPHIYS-NGHICLGIAS 104 (105)
Q Consensus 86 ~i~HPnv~~-~G~iCl~iL~ 104 (105)
+||||||+. +|+|||++|+
T Consensus 82 ~i~HPni~~~~G~iCl~iL~ 101 (159)
T 2bep_A 82 KIWHPNISSVTGAICLDILK 101 (159)
T ss_dssp CCCBTTBCTTTCBBCCGGGT
T ss_pred CCCccCCCCCCCEEeChhhh
Confidence 799999995 9999999985
No 23
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4.3e-36 Score=206.87 Aligned_cols=90 Identities=31% Similarity=0.652 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn 91 (105)
..+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++||||
T Consensus 6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPn 84 (183)
T 3rz3_A 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT-KMWHPN 84 (183)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCCTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecC-CCccCC
Confidence 46799999999999999999999994 789999999999999999999999999999999999999999999 799999
Q ss_pred ccCCCceEEecCC
Q 034040 92 IYSNGHICLGIAS 104 (105)
Q Consensus 92 v~~~G~iCl~iL~ 104 (105)
|+++|+|||++|+
T Consensus 85 V~~~G~iClsiL~ 97 (183)
T 3rz3_A 85 IYETGDVCISILH 97 (183)
T ss_dssp BCTTSBBCCTTC-
T ss_pred CCCCCcEehhhcC
Confidence 9999999999995
No 24
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=6.2e-36 Score=200.14 Aligned_cols=87 Identities=38% Similarity=0.679 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCC
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN 95 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~ 95 (105)
.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||||+.+
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv~~~ 81 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT-KIYHPNIDKL 81 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-CCCBTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEecc-CCccCCCCCC
Confidence 58999999999999999999998 889999999999999999999999999999999999999999999 7999999999
Q ss_pred CceEEecCC
Q 034040 96 GHICLGIAS 104 (105)
Q Consensus 96 G~iCl~iL~ 104 (105)
|+|||++|+
T Consensus 82 G~iCl~iL~ 90 (149)
T 2r0j_A 82 GRICLDILK 90 (149)
T ss_dssp CBBCCGGGT
T ss_pred CEEechhcC
Confidence 999999985
No 25
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.8e-36 Score=203.86 Aligned_cols=96 Identities=25% Similarity=0.460 Sum_probs=87.9
Q ss_pred CCcccccHHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 7 PSRKALSKIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 7 ~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
+++...++.+.+||++|+++|+++++.|+++.+ ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 84 (167)
T 3fn1_B 6 SDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT 84 (167)
T ss_dssp --CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred CCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence 444555668899999999999999999999986 57899999998 899999999999999999999999999999999
Q ss_pred CCCccccccCCCceEEecCC
Q 034040 85 PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 85 p~i~HPnv~~~G~iCl~iL~ 104 (105)
+||||||+.+|+|||++|+
T Consensus 85 -~i~HPnv~~~G~iCl~iL~ 103 (167)
T 3fn1_B 85 -KIWHPNITETGEICLSLLR 103 (167)
T ss_dssp -CCCCSSBCTTCCBCCGGGS
T ss_pred -CcccCCCCCCCEEechhhc
Confidence 7999999999999999985
No 26
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=3.5e-36 Score=202.48 Aligned_cols=88 Identities=34% Similarity=0.642 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~ 94 (105)
+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| ++|||||+.
T Consensus 6 ~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv~~ 84 (155)
T 1jat_A 6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT-KIYHPNIDR 84 (155)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECS-CCCBTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeec-ccccCCCCC
Confidence 469999999999999999999998 889999999999999999999999999999999999999999999 799999999
Q ss_pred CCceEEecCC
Q 034040 95 NGHICLGIAS 104 (105)
Q Consensus 95 ~G~iCl~iL~ 104 (105)
+|+|||++|+
T Consensus 85 ~G~iCl~iL~ 94 (155)
T 1jat_A 85 LGRICLDVLK 94 (155)
T ss_dssp TCCBCCGGGT
T ss_pred CCEEEchhhc
Confidence 9999999984
No 27
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.7e-35 Score=205.60 Aligned_cols=90 Identities=33% Similarity=0.658 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| +||||||
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-~i~HPNV 125 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRT-RIYHCNI 125 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCBTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccC-CCccceE
Confidence 56899999999999999999999999 889999999999999999999999999999999999999999999 7999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+.+|+|||++|+
T Consensus 126 ~~~G~ICL~iL~ 137 (194)
T 3bzh_A 126 NSQGVICLDILK 137 (194)
T ss_dssp CTTCBBCCGGGT
T ss_pred CCCCceechhhh
Confidence 999999999984
No 28
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1e-35 Score=199.01 Aligned_cols=88 Identities=28% Similarity=0.564 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~ 93 (105)
+.+||++|+++|+++++.|+.+.+ ++ |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPni~ 80 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-KVYHPNIS 80 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeC-CCccCCCc
Confidence 469999999999999999999998 55 8999999999999999999999999999999999999999999 79999999
Q ss_pred C-CCceEEecCC
Q 034040 94 S-NGHICLGIAS 104 (105)
Q Consensus 94 ~-~G~iCl~iL~ 104 (105)
. +|+|||++|+
T Consensus 81 ~~~G~iCl~iL~ 92 (149)
T 1fxt_A 81 SVTGAICLDILK 92 (149)
T ss_dssp SSSCCBCCHHHH
T ss_pred CCCCeEeCCcCC
Confidence 8 9999999873
No 29
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-35 Score=205.18 Aligned_cols=91 Identities=31% Similarity=0.570 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHHHHHhhCCC-------------CCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCC
Q 034040 13 SKIASNRLQKELVEWQVNPP-------------AGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAP 78 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~-------------~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP 78 (105)
+..+.+||++|+++|+++++ .|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 45678999999999999876 7999998 889999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccc-CCCceEEecCC
Q 034040 79 QVIFLPPAPLHPHIY-SNGHICLGIAS 104 (105)
Q Consensus 79 ~v~f~tp~i~HPnv~-~~G~iCl~iL~ 104 (105)
+|+|.| +||||||+ .+|+|||++|+
T Consensus 110 ~V~F~T-~i~HPNI~~~~G~ICL~iL~ 135 (193)
T 2f4z_A 110 KMKFVT-KIWHPNISSQTGAICLDILK 135 (193)
T ss_dssp EEEESS-CCCBTTBCTTTCBBCCGGGT
T ss_pred eEEEec-CCccCCCcCCCCEEECcccc
Confidence 999999 79999999 59999999985
No 30
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=2.1e-35 Score=207.91 Aligned_cols=92 Identities=28% Similarity=0.551 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP 90 (105)
.++.+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||
T Consensus 20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T-~i~HP 98 (216)
T 2pwq_A 20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVT-KIWHP 98 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBT
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccC-CCcCC
Confidence 4457899999999999999999999999 889999999999999999999999999999999999999999999 79999
Q ss_pred ccc-CCCceEEecCC
Q 034040 91 HIY-SNGHICLGIAS 104 (105)
Q Consensus 91 nv~-~~G~iCl~iL~ 104 (105)
||+ .+|+|||++|+
T Consensus 99 NI~~~~G~ICL~iL~ 113 (216)
T 2pwq_A 99 NISSQTGAICLDVLK 113 (216)
T ss_dssp TBCTTTCBBCCHHHH
T ss_pred CCcCCCCEEEchhhc
Confidence 999 59999999873
No 31
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=5.8e-35 Score=197.58 Aligned_cols=93 Identities=27% Similarity=0.386 Sum_probs=84.9
Q ss_pred cccHHHHHHHHHHHHHHhhCCCCC-eEEee--cCC--ccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 11 ALSKIASNRLQKELVEWQVNPPAG-FKHKV--TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~~~~~~-~~~~~--~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
.+...+.+||+||+++|++++++| +.+.+ ++| ++.|+++|.||++||||||.|+++|.||++||++||+|+|.|
T Consensus 21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T- 99 (160)
T 2a4d_A 21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT- 99 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB-
T ss_pred eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEec-
Confidence 345779999999999999998888 67776 444 899999999999999999999999999999999999999999
Q ss_pred CCcccccc-CCCceEEecCC
Q 034040 86 APLHPHIY-SNGHICLGIAS 104 (105)
Q Consensus 86 ~i~HPnv~-~~G~iCl~iL~ 104 (105)
+||||||+ .+|+||+++|+
T Consensus 100 ~i~HPNV~~~~G~ICl~iL~ 119 (160)
T 2a4d_A 100 KINMNGVNSSNGVVDPRAIS 119 (160)
T ss_dssp CCCCTTBCTTTCBBCGGGSH
T ss_pred CceeCCEECCCCEEehhhcC
Confidence 79999999 69999999885
No 32
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=7.4e-35 Score=209.19 Aligned_cols=96 Identities=31% Similarity=0.581 Sum_probs=88.9
Q ss_pred CcccccHHHHHHHHHHHHHHhhC---CCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe
Q 034040 8 SRKALSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFL 83 (105)
Q Consensus 8 ~~~~~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 83 (105)
++..|+..+.+||++|+++|+++ ++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.
T Consensus 50 s~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~ 129 (253)
T 3e46_A 50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 129 (253)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred ccccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence 44678889999999999999987 478999999 88999999999999999999999999999999999999999999
Q ss_pred cCCCccccccC-CCceEEecCC
Q 034040 84 PPAPLHPHIYS-NGHICLGIAS 104 (105)
Q Consensus 84 tp~i~HPnv~~-~G~iCl~iL~ 104 (105)
| +||||||+. +|+|||+||+
T Consensus 130 T-~i~HPNV~~~~G~ICL~iL~ 150 (253)
T 3e46_A 130 T-KIWHPNISSVTGAICLDILK 150 (253)
T ss_dssp S-CCCBTTBCTTTCBBCCGGGT
T ss_pred C-CCccCCccCCCCeeeccccc
Confidence 9 799999995 9999999984
No 33
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=3.6e-35 Score=204.72 Aligned_cols=92 Identities=32% Similarity=0.610 Sum_probs=84.9
Q ss_pred ccHHHHHHHHHHHHHHhhC---CCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040 12 LSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (105)
Q Consensus 12 ~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i 87 (105)
|+..+.+||++|+++|+++ ++.|+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +|
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i 80 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT-KI 80 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCcccccc-Cc
Confidence 4556799999999999987 368999999 889999999999999999999999999999999999999999999 89
Q ss_pred ccccccC-CCceEEecCC
Q 034040 88 LHPHIYS-NGHICLGIAS 104 (105)
Q Consensus 88 ~HPnv~~-~G~iCl~iL~ 104 (105)
|||||+. +|+|||++|+
T Consensus 81 ~HPnv~~~~G~iCl~iL~ 98 (201)
T 3k9o_A 81 WHPNISSVTGAICLDILK 98 (201)
T ss_dssp CBTTBCTTTCBBCCGGGT
T ss_pred ccCCCcCCCCeeeCcccc
Confidence 9999995 9999999984
No 34
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-34 Score=199.97 Aligned_cols=98 Identities=21% Similarity=0.448 Sum_probs=79.7
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCe
Q 034040 1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQ 79 (105)
Q Consensus 1 m~~s~~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~ 79 (105)
|+++++. ..+..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+
T Consensus 3 mss~~~~---~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~ 79 (187)
T 2f4w_A 3 MSSTSSK---RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS 79 (187)
T ss_dssp --------------CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCE
T ss_pred CCccCCC---CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCc
Confidence 6555533 34567899999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCCCceEEecCC
Q 034040 80 VIFLPPAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 80 v~f~tp~i~HPnv~~~G~iCl~iL~ 104 (105)
|+|.| + ||||+.+|+|||+||+
T Consensus 80 v~f~T-~--~~~~~~~G~ICL~iL~ 101 (187)
T 2f4w_A 80 IYMIT-P--NGRFKCNTRLCLSITD 101 (187)
T ss_dssp EEECS-C--CSSBCTTSCBC-----
T ss_pred ccccC-C--CceeccCCeEeeeccc
Confidence 99999 5 9999999999999994
No 35
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=9.1e-35 Score=195.48 Aligned_cols=87 Identities=32% Similarity=0.608 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEE-ee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKH-KV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~-~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
.+.+||++|+++|+++++.|+.+ .+ ++|++.|+++|. |++|||+||.|+|+|.||++||++||+|+|.| ++|||||
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnV 81 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT-KIYHPNV 81 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESS-CCCBTTB
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeC-CCccCcC
Confidence 46899999999999999999999 56 789999999999 99999999999999999999999999999999 7999999
Q ss_pred cCCCceEEecC
Q 034040 93 YSNGHICLGIA 103 (105)
Q Consensus 93 ~~~G~iCl~iL 103 (105)
+.+|+|||++|
T Consensus 82 ~~~G~iCl~iL 92 (155)
T 1wzv_A 82 DENGQICLPII 92 (155)
T ss_dssp CTTCBCCCGGG
T ss_pred CCCCeEeecCC
Confidence 99999999998
No 36
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.9e-34 Score=194.37 Aligned_cols=92 Identities=26% Similarity=0.369 Sum_probs=84.4
Q ss_pred cccHHHHHHHHHHHHHHhhC-CCCCeEEee-c-C--CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 11 ALSKIASNRLQKELVEWQVN-PPAGFKHKV-T-D--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~~-~~~~~~~~~-~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
..+..+.+||++|+++|+++ ++.|+++.+ + + |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t- 95 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT- 95 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB-
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc-
Confidence 44557789999999999998 788999988 3 3 4899999999999999999999999999999999999999999
Q ss_pred CCccccccCCCce---EEecC
Q 034040 86 APLHPHIYSNGHI---CLGIA 103 (105)
Q Consensus 86 ~i~HPnv~~~G~i---Cl~iL 103 (105)
+||||||+.+|+| ||++|
T Consensus 96 ~i~HPNV~~~G~icisCL~iL 116 (156)
T 2q0v_A 96 KIEMSCVDNCGRVIKNNLHIL 116 (156)
T ss_dssp CCCCTTBCTTSBBCGGGSHHH
T ss_pred ccccCCCccCCeEehhhcccc
Confidence 7999999999999 88776
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=3.6e-34 Score=195.60 Aligned_cols=94 Identities=27% Similarity=0.505 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHHHHHHhh-C-C------CC---CeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCC
Q 034040 11 ALSKIASNRLQKELVEWQV-N-P------PA---GFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~p 77 (105)
+|+..+.+||++|+++|++ . + +. ++.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++|
T Consensus 2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P 81 (172)
T 2y9m_A 2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81 (172)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence 5778899999999999998 4 3 33 455555 67999999999999999999999999999999999999
Q ss_pred CeEEEecCCCcccccc-CCCceEEecCC
Q 034040 78 PQVIFLPPAPLHPHIY-SNGHICLGIAS 104 (105)
Q Consensus 78 P~v~f~tp~i~HPnv~-~~G~iCl~iL~ 104 (105)
|+|+|.|++||||||+ .+|+|||++|+
T Consensus 82 P~v~f~t~~i~HPni~~~~G~iCl~iL~ 109 (172)
T 2y9m_A 82 PKISFMQNNILHCNVKSATGEICLNILK 109 (172)
T ss_dssp CEEEECTTSCCCTTEETTTTEECCGGGS
T ss_pred CEEEEeeCCeecCCCcCCCCEEeccccC
Confidence 9999999559999996 79999999985
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-34 Score=196.46 Aligned_cols=91 Identities=23% Similarity=0.380 Sum_probs=84.2
Q ss_pred ccccHHHHHHHHHHHHHHhhCCCCCeEEe-e-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040 10 KALSKIASNRLQKELVEWQVNPPAGFKHK-V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (105)
Q Consensus 10 ~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~-~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i 87 (105)
...++.+.+||++|+++| ++++|+++. + ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.| +|
T Consensus 21 ~~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t-~i 96 (180)
T 2nvu_C 21 SKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-MV 96 (180)
T ss_dssp CCSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECS-CC
T ss_pred cCCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceec-cC
Confidence 444567899999999999 578899998 5 78999999998 999999999999999999999999999999999 79
Q ss_pred ccccccCCCceEEecCC
Q 034040 88 LHPHIYSNGHICLGIAS 104 (105)
Q Consensus 88 ~HPnv~~~G~iCl~iL~ 104 (105)
|||||+.+|+|||++|+
T Consensus 97 ~HPNV~~~G~iCl~iL~ 113 (180)
T 2nvu_C 97 YHPNIDLEGNVALNILR 113 (180)
T ss_dssp CBTTBCTTSBBCCGGGT
T ss_pred ccCCCCCCCcEEccccc
Confidence 99999999999999984
No 39
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=6.1e-35 Score=198.50 Aligned_cols=92 Identities=27% Similarity=0.539 Sum_probs=85.5
Q ss_pred cccHHHHHHHHHHHHHHhhCC------------CCCeEEee-cCCccceEEEEEcCCCCCCC--CCEEEEEEECCCCCCC
Q 034040 11 ALSKIASNRLQKELVEWQVNP------------PAGFKHKV-TDNLQRWIIEVNGAPGTLYA--NETFELQVDFPEHYPM 75 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~~~------------~~~~~~~~-~~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~yP~ 75 (105)
.|++.+.+||++|+++|++++ +.++.+.+ ++|++.|+++|.||++|||+ ||.|+++|.||++||+
T Consensus 4 ~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~ 83 (167)
T 4ds2_A 4 SMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPH 83 (167)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTT
T ss_pred cccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCC
Confidence 455567899999999999976 67888888 89999999999999999999 9999999999999999
Q ss_pred CCCeEEEecCCCccccccCCCceEEecC
Q 034040 76 EAPQVIFLPPAPLHPHIYSNGHICLGIA 103 (105)
Q Consensus 76 ~pP~v~f~tp~i~HPnv~~~G~iCl~iL 103 (105)
+||+|+|.| ++|||||+.+|+|||++|
T Consensus 84 ~pP~v~f~t-~i~HPnv~~~G~iCl~il 110 (167)
T 4ds2_A 84 EPPTVRFVT-PVYSPLVTGEGGICDRMV 110 (167)
T ss_dssp SCCEEEESS-CCCCSSCCTTSCCCTHHH
T ss_pred CCCEEEEeC-CcccccCCCCCEEEcccC
Confidence 999999999 799999999999999987
No 40
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=195.18 Aligned_cols=91 Identities=27% Similarity=0.386 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHHHhhCCCCC-eEEee--cCC--ccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040 13 SKIASNRLQKELVEWQVNPPAG-FKHKV--TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~-~~~~~--~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i 87 (105)
...+.+||++|+++|++++++| +.+.+ ++| ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +|
T Consensus 33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T-~i 111 (170)
T 2hlw_A 33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT-KI 111 (170)
T ss_dssp CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECB-CC
T ss_pred cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEec-cc
Confidence 3457899999999999998888 66765 344 899999999999999999999999999999999999999999 79
Q ss_pred cccccc-CCCceEEecCC
Q 034040 88 LHPHIY-SNGHICLGIAS 104 (105)
Q Consensus 88 ~HPnv~-~~G~iCl~iL~ 104 (105)
|||||+ .+|+||+++|+
T Consensus 112 ~HPNV~~~~G~ICl~iL~ 129 (170)
T 2hlw_A 112 NMNGVNSSNGVVDPRAIS 129 (170)
T ss_dssp CCSSBCSSSCBBCTTTCH
T ss_pred ccCCEeCCCCEEEhhhcC
Confidence 999999 79999999884
No 41
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.3e-34 Score=192.12 Aligned_cols=87 Identities=25% Similarity=0.444 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEe-e-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHK-V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn 91 (105)
+.+.+||++|+++| ++++|+++. + ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.| +|||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPn 80 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-MVYHPN 80 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECS-CCCBTT
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEec-CCccCc
Confidence 36789999999999 568899998 5 78999999988 999999999999999999999999999999999 799999
Q ss_pred ccCCCceEEecCC
Q 034040 92 IYSNGHICLGIAS 104 (105)
Q Consensus 92 v~~~G~iCl~iL~ 104 (105)
|+.+|+|||++|+
T Consensus 81 v~~~G~iCl~iL~ 93 (160)
T 1y8x_A 81 IDLEGNVCLNILR 93 (160)
T ss_dssp BCTTCBBCCGGGT
T ss_pred CCCCCeEEcccch
Confidence 9999999999984
No 42
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6.8e-35 Score=205.22 Aligned_cols=88 Identities=28% Similarity=0.563 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~ 93 (105)
+.+||++|+++|+++++.|+++.+ ++ +++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T-~i~HPNI~ 81 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-KVYHPNIS 81 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETT-TCCCSSSC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccC-CCccCcCc
Confidence 579999999999999999999998 54 5679999999999999999999999999999999999999999 79999999
Q ss_pred C-CCceEEecCC
Q 034040 94 S-NGHICLGIAS 104 (105)
Q Consensus 94 ~-~G~iCl~iL~ 104 (105)
. +|+|||++|+
T Consensus 82 ~~~G~ICL~iL~ 93 (215)
T 1tte_A 82 SVTGAICLDILR 93 (215)
T ss_dssp SSSSCCCSSTTT
T ss_pred CCCCEEECccCC
Confidence 9 9999999985
No 43
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.1e-33 Score=187.06 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhhC-CCCCeEEee-c-C--CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040 15 IASNRLQKELVEWQVN-PPAGFKHKV-T-D--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~-~~~~~~~~~-~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H 89 (105)
.+.+||+||+++++++ ++.|+++.+ + + |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +|||
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~H 84 (138)
T 1jat_B 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS-KINL 84 (138)
T ss_dssp CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB-CCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEc-cccc
Confidence 5679999999999998 788999988 3 3 4899999999999999999999999999999999999999999 7999
Q ss_pred ccccCC-Cce--EEecC
Q 034040 90 PHIYSN-GHI--CLGIA 103 (105)
Q Consensus 90 Pnv~~~-G~i--Cl~iL 103 (105)
|||+.+ |+| ||++|
T Consensus 85 Pnv~~~~G~i~~cL~~l 101 (138)
T 1jat_B 85 PCVNPTTGEVQTDFHTL 101 (138)
T ss_dssp TTBCTTTCBBCTTSHHH
T ss_pred CCEeCCCCEEeeecccC
Confidence 999985 999 89876
No 44
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=4.3e-34 Score=192.01 Aligned_cols=88 Identities=31% Similarity=0.576 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
.+.+||++|+++|+++++.|+.+.. ++|++.|+++|. |++|||+||.|+++|.||++||++||+|+|.| ++|||||
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv 79 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKT-KIYHPNI 79 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESS-CCCCTTB
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeC-CCccccC
Confidence 3568999999999999999998665 679999999998 99999999999999999999999999999999 7999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+.+|+|||++|+
T Consensus 80 ~~~G~iCl~iL~ 91 (154)
T 1c4z_D 80 DEKGQVCLPVIS 91 (154)
T ss_dssp CTTCBBCCTTTS
T ss_pred CCCCEEECCCCC
Confidence 999999999984
No 45
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=194.41 Aligned_cols=85 Identities=22% Similarity=0.610 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~ 94 (105)
.+.+||++|+++|+. .|+.+.+.+|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t-~i~HPNV~~ 100 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN-KIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCBTTBCT
T ss_pred HHHHHHHHHHHhcCc---CCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEec-CCccCcCCC
Confidence 589999999999985 5788877567899999999999999999999999999999999999999999 799999998
Q ss_pred -CCceEEecC
Q 034040 95 -NGHICLGIA 103 (105)
Q Consensus 95 -~G~iCl~iL 103 (105)
+|+|||++|
T Consensus 101 ~~G~ICL~iL 110 (179)
T 2z5d_A 101 ASGTVCLDVI 110 (179)
T ss_dssp TTCBBCHHHH
T ss_pred CCCeEecccc
Confidence 999999987
No 46
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=7.9e-34 Score=190.56 Aligned_cols=85 Identities=24% Similarity=0.583 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~ 94 (105)
+.+||++|++++++. |+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPni~~ 78 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN-KLLHPNVDE 78 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCTTBCT
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEec-CCccCcCcC
Confidence 458999999999873 788888 889999999999999999999999999999999999999999999 799999995
Q ss_pred -CCceEEecCC
Q 034040 95 -NGHICLGIAS 104 (105)
Q Consensus 95 -~G~iCl~iL~ 104 (105)
+|+|||++|+
T Consensus 79 ~~G~iCl~il~ 89 (152)
T 2onu_A 79 ASGSVCLDVIN 89 (152)
T ss_dssp TTCBBCHHHHH
T ss_pred cCCeEeccccc
Confidence 9999999873
No 47
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=202.40 Aligned_cols=96 Identities=29% Similarity=0.531 Sum_probs=87.1
Q ss_pred cccccHHHHHHHHHHHHHHhhCCCCC----eEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe
Q 034040 9 RKALSKIASNRLQKELVEWQVNPPAG----FKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFL 83 (105)
Q Consensus 9 ~~~~s~~~~~Rl~~E~~~l~~~~~~~----~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 83 (105)
...++..+.+||++|+++|+++++.| +.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.
T Consensus 70 ~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~ 149 (323)
T 3ceg_A 70 NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE 149 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence 34678899999999999999987775 44555 88999999999999999999999999999999999999999999
Q ss_pred cC----CCccccccCCCceEEecCC
Q 034040 84 PP----APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 84 tp----~i~HPnv~~~G~iCl~iL~ 104 (105)
|+ .+|||||+.+|+|||+||+
T Consensus 150 T~~g~~~ifHPNV~~~G~ICLsiL~ 174 (323)
T 3ceg_A 150 TTGGHSVRFNPNLYNDGKVCLSILN 174 (323)
T ss_dssp CSTTTTCCCBTTBCTTCBBCCGGGT
T ss_pred ccCCCcccccCCCCcCCeEechhhc
Confidence 93 2999999999999999995
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.98 E-value=1.5e-32 Score=207.81 Aligned_cols=90 Identities=33% Similarity=0.612 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv 92 (105)
+.+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++|||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnv 80 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT-RIYHPNI 80 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESS-CCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeec-ccccccc
Confidence 46899999999999999999999999 889999999999999999999999999999999999999999999 7999999
Q ss_pred cCCCceEEecCC
Q 034040 93 YSNGHICLGIAS 104 (105)
Q Consensus 93 ~~~G~iCl~iL~ 104 (105)
+++|+|||++|+
T Consensus 81 ~~~G~iCl~il~ 92 (399)
T 4ddg_A 81 NSNGSISLDILR 92 (399)
T ss_dssp CTTCBBCCGGGT
T ss_pred CCCCeEeCcccc
Confidence 999999999984
No 49
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.98 E-value=1.6e-32 Score=190.04 Aligned_cols=90 Identities=26% Similarity=0.460 Sum_probs=82.8
Q ss_pred cccHHHHHHHHHHHHHHhhCCCCCeEEe----e-cCCcc---ceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040 11 ALSKIASNRLQKELVEWQVNPPAGFKHK----V-TDNLQ---RWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF 82 (105)
Q Consensus 11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~----~-~~~~~---~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 82 (105)
...+.+.+||++|+++|+ .++|+++. + ++|++ .|+++|. |++|||+||.|+++|.||++||++||+|+|
T Consensus 25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f 101 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101 (190)
T ss_dssp CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence 334578999999999998 67899997 6 78999 9999997 788999999999999999999999999999
Q ss_pred ecCCCccccccCCCceEEecCC
Q 034040 83 LPPAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 83 ~tp~i~HPnv~~~G~iCl~iL~ 104 (105)
.| +||||||+.+|+||+++|+
T Consensus 102 ~t-~i~HPnV~~~G~iCl~iL~ 122 (190)
T 3o2u_A 102 LK-KIFHPNIDLKGNVCLNILR 122 (190)
T ss_dssp CS-CCCCTTBCTTSBBCCGGGT
T ss_pred ec-CcccCCCCCCCeEechhcc
Confidence 99 7999999999999999984
No 50
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.98 E-value=8.6e-33 Score=188.68 Aligned_cols=86 Identities=24% Similarity=0.532 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~ 94 (105)
.+.+||++|+++|++++. ++ ..++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v--~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t-~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV--YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN-RILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE--EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC--CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeec-CcccccCcc
Confidence 567999999999999874 43 34889999999999999999999999999999999999999999999 899999995
Q ss_pred -CCceEEecCC
Q 034040 95 -NGHICLGIAS 104 (105)
Q Consensus 95 -~G~iCl~iL~ 104 (105)
+|+|||++|+
T Consensus 88 ~~G~iCl~iL~ 98 (171)
T 1yf9_A 88 RSGSVCLDVIN 98 (171)
T ss_dssp TTCBBCHHHHH
T ss_pred cCCeEeccccc
Confidence 9999999873
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=5.5e-33 Score=191.84 Aligned_cols=97 Identities=22% Similarity=0.400 Sum_probs=86.8
Q ss_pred CCcccccHHHHHHHHHHHHHHhhCC---CCCeEEee-cCCccceEEEEEcC-CCCCCCC-----------CEEEEEEECC
Q 034040 7 PSRKALSKIASNRLQKELVEWQVNP---PAGFKHKV-TDNLQRWIIEVNGA-PGTLYAN-----------ETFELQVDFP 70 (105)
Q Consensus 7 ~~~~~~s~~~~~Rl~~E~~~l~~~~---~~~~~~~~-~~~~~~w~~~i~gp-~~tpy~g-----------g~f~~~i~fp 70 (105)
..+..|+..+.+||++|+++|++++ +.++.+.+ ++|++.|+++|.|| ++|||+| |.|+|+|.||
T Consensus 19 ~g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp 98 (186)
T 1zuo_A 19 SGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK 98 (186)
T ss_dssp -----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred CCcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence 3456678889999999999999987 68899988 88999999999997 9999998 8999999999
Q ss_pred CCCCCCCCeEEEecCCCccc-cccCCCceEEecCC
Q 034040 71 EHYPMEAPQVIFLPPAPLHP-HIYSNGHICLGIAS 104 (105)
Q Consensus 71 ~~yP~~pP~v~f~tp~i~HP-nv~~~G~iCl~iL~ 104 (105)
++||++||+|+|.| .+||| ||+.+|+|||+||+
T Consensus 99 ~~YP~~PP~V~f~t-pi~hPnnV~~~G~ICL~iL~ 132 (186)
T 1zuo_A 99 DNFPFDPPFVRVVL-PVLSGGYVLGGGALCMELLT 132 (186)
T ss_dssp TTTTSSCCEEEEEE-SCEESTTBCGGGBBCCGGGS
T ss_pred CCCCCCCCeEEEeC-CccCCCccCCCCcEEeccCC
Confidence 99999999999999 69999 69999999999994
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94 E-value=3e-28 Score=164.39 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEE
Q 034040 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVI 81 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~ 81 (105)
...-.+||++|+++|.+ ++.+ ++|...|.+++.||+||+|+|| .|+++|.||++||++||+|+
T Consensus 30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 35569999999999998 2444 7799999999999999999999 99999999999999999999
Q ss_pred EecCCCccccccCCCceEEecC
Q 034040 82 FLPPAPLHPHIYSNGHICLGIA 103 (105)
Q Consensus 82 f~tp~i~HPnv~~~G~iCl~iL 103 (105)
|.+..++|||||.+|+|||+||
T Consensus 104 F~~~~~~hpnmY~~G~ICLdIL 125 (172)
T 2z6o_A 104 VPELDGKTAKMYRGGKICLTDH 125 (172)
T ss_dssp CGGGTTTCSSBCTTSBBCCCTT
T ss_pred eCCCCCCCCCCCCCCcEechhh
Confidence 9993399999999999999998
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.82 E-value=2.3e-21 Score=128.66 Aligned_cols=84 Identities=20% Similarity=0.385 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEE
Q 034040 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVIF 82 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f 82 (105)
..=..||.+|++.|-+ ++.. +++-.+|...+.||+||+|+|+ .|++++.||.+||.+||.|+|
T Consensus 33 ~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F 106 (168)
T 3kpa_A 33 DKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL 106 (168)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence 4578999999999954 1222 3455789999999999999999 999999999999999999999
Q ss_pred ecCCCccccccCCCceEEecC
Q 034040 83 LPPAPLHPHIYSNGHICLGIA 103 (105)
Q Consensus 83 ~tp~i~HPnv~~~G~iCl~iL 103 (105)
.+..++|||+|.+|+|||+++
T Consensus 107 p~ldgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 107 PELEGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp GGGTTTCSSEETTTEECCCTT
T ss_pred ccccCcCccccCCCcEEeccc
Confidence 994489999999999999985
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.61 E-value=7e-16 Score=104.11 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhCCCCCeEE----ee-cCCccceEEEEEcCCCCCCCCCE---EEEEEECCCCCCCCCCeEEEecC----
Q 034040 18 NRLQKELVEWQVNPPAGFKH----KV-TDNLQRWIIEVNGAPGTLYANET---FELQVDFPEHYPMEAPQVIFLPP---- 85 (105)
Q Consensus 18 ~Rl~~E~~~l~~~~~~~~~~----~~-~~~~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~yP~~pP~v~f~tp---- 85 (105)
+|..+|+.++.+.- +++.. .. +|...++.+.+.|.-..+|+|+. |.+.|.||++||++||.|.|.++
T Consensus 31 ~~~~~dv~~~l~~y-p~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 31 RTTFHDSLALLDNF-HSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hHHHHHHHHHHHhC-CCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 55667777775532 23333 23 56667788888887778999998 88999999999999999977431
Q ss_pred --C---Cc-cccccCCCceEEecCC
Q 034040 86 --A---PL-HPHIYSNGHICLGIAS 104 (105)
Q Consensus 86 --~---i~-HPnv~~~G~iCl~iL~ 104 (105)
+ |+ |||||++|+||+++|+
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~ 134 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH 134 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG
T ss_pred cccccccCCCCCCCCCCcEeCcccc
Confidence 1 77 9999999999999984
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.28 E-value=4e-12 Score=84.39 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=52.1
Q ss_pred cCCccceEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecC-----CCccccccCCCceEEecCC
Q 034040 40 TDNLQRWIIEVNGAPGTLYANETFEL--QVDFPEHYPMEAPQVIFLPP-----APLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 40 ~~~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~yP~~pP~v~f~tp-----~i~HPnv~~~G~iCl~iL~ 104 (105)
..++..|.++|. .+|+|+.|.+ .|.||++||++||.| |.+| ...|||||.+|+||+++|+
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~ 116 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH 116 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc
Confidence 468899999998 3899999995 899999999999999 7765 1489999999999998763
No 56
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.94 E-value=0.014 Score=36.71 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCCCeEEee-c--CCccceEEEEEcCCCCCCC--CCEEEEEEECCCCCCCCCCeEEEec
Q 034040 19 RLQKELVEWQVNPPAGFKHKV-T--DNLQRWIIEVNGAPGTLYA--NETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 19 Rl~~E~~~l~~~~~~~~~~~~-~--~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
....|+..|+.--+.-+.... . .....+.+.+..+.+..-+ .-.+.+.+.||++||..+|.|.+.+
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 567899999876555555443 2 1234455555432221111 2367899999999999999998877
No 57
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.89 E-value=0.0059 Score=38.51 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
..+...|+..|+.--+..+.+. .+....+.+.+..-.+..-+.-.+.+.+.||++||..||.+.+.+
T Consensus 12 ~e~q~~EleaL~sIy~d~~~~~-~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 12 GEEQRNELEALESIYPDSFTVL-SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEC-CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHccCceEEc-cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4566789999987654444432 222356666665322222233478899999999999999998876
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.035 Score=35.35 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeec-------CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040 16 ASNRLQKELVEWQVNPPAGFKHKVT-------DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (105)
Q Consensus 16 ~~~Rl~~E~~~l~~~~~~~~~~~~~-------~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp 85 (105)
...+-..|+..|+.--+..+..... +....+.+.+....+ .-..-.+.+.+.+|++||..+|.|.+.++
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 3455677898887754444332222 124677788774332 11234678999999999999999998763
No 59
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.87 E-value=0.059 Score=35.23 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHHhhCCC--CCeEEeec--------------CC-c--cceEEEEEcCCCCCCCCCEEEEEEECCCCC
Q 034040 13 SKIASNRLQKELVEWQVNPP--AGFKHKVT--------------DN-L--QRWIIEVNGAPGTLYANETFELQVDFPEHY 73 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l~~~~~--~~~~~~~~--------------~~-~--~~w~~~i~gp~~tpy~gg~f~~~i~fp~~y 73 (105)
......+-..|+..|...-+ .-+.+... .+ . ..+.+.+.-. + + ...+.+.|.+|.+|
T Consensus 12 ~~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~-~-~--~~~i~L~v~lP~~Y 87 (154)
T 2daw_A 12 VKESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIE-E-P--KVKIDLQVTMPHSY 87 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEET-T-T--TEEEEEEEEECSST
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecC-C-C--CceEEEEEEcCCCC
Confidence 34445556678888877543 44544310 01 1 3445444422 1 1 13789999999999
Q ss_pred CCCCCeEEEec
Q 034040 74 PMEAPQVIFLP 84 (105)
Q Consensus 74 P~~pP~v~f~t 84 (105)
|..+|.|...+
T Consensus 88 P~~~P~i~l~~ 98 (154)
T 2daw_A 88 PYLALQLFGRS 98 (154)
T ss_dssp TSSCCEEEEEC
T ss_pred CCCCCcEEEEe
Confidence 99999999887
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.75 E-value=0.061 Score=34.05 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeec-C-----CccceEEEEEcCCC-C-CCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 17 SNRLQKELVEWQVNPPAGFKHKVT-D-----NLQRWIIEVNGAPG-T-LYANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 17 ~~Rl~~E~~~l~~~~~~~~~~~~~-~-----~~~~w~~~i~gp~~-t-py~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
..+...|+..|+.--+..+..... . ....+.+.+.. .+ + .-..-.+.+.+.||++||..+|.|.+.+
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYP-QGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECC-TTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEec-CCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 456678999988765444444322 1 13456666652 21 1 0012368899999999999999998854
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.94 E-value=0.046 Score=34.34 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCC--CeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 19 RLQKELVEWQVNPPA--GFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 19 Rl~~E~~~l~~~~~~--~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
+...|+..|+.--+. .+.+.. ..+...+.+.+..... .=..-.+.+.+.+|++||..+|.|.+.+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGF-MDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTT-TTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCC-CCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 356788888764322 333322 1234577777764221 0012368899999999999999997665
No 62
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=92.38 E-value=0.59 Score=31.71 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCc
Q 034040 18 NRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPL 88 (105)
Q Consensus 18 ~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~ 88 (105)
.+|.+|+.++ |+.-.. +.+....++.+.-. .|....++|.++.+||.++|.+...-|..+
T Consensus 4 ~~li~Ei~~i------GW~~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~ 65 (186)
T 3zqs_A 4 SSLIEEIGTL------GWDKLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPVPF 65 (186)
T ss_dssp CSHHHHHHHH------CGGGEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSSCC
T ss_pred HHHHHHHHHh------CCceeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCCCc
Confidence 3678888888 443322 67788888888842 478999999999999999999887776444
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=91.96 E-value=0.1 Score=33.84 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEEECCCCCCCCCCeEEEec
Q 034040 62 TFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 62 ~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
.+.+.+.+|.+||..||.+.+.+
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 57889999999999999999887
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=69.65 E-value=3.7 Score=18.36 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCe
Q 034040 15 IASNRLQKELVEWQVNPPAGF 35 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~~~~~~~~ 35 (105)
....||.-|+...+.+++.|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 357899999999999998774
No 65
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=61.97 E-value=8.8 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCCEEEEEEECCCCCCC-----CCCeEEEec
Q 034040 59 ANETFELQVDFPEHYPM-----EAPQVIFLP 84 (105)
Q Consensus 59 ~gg~f~~~i~fp~~yP~-----~pP~v~f~t 84 (105)
+.|.|.|+-++|--||. .||.|+|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46899999999999998 899999874
No 66
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=51.14 E-value=9.4 Score=24.42 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=24.0
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|-+.- .+--|++|..+|+.|+++|.
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~ 73 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLG 73 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECB
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECC
Confidence 3689887762 15679999999999999985
No 67
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=44.95 E-value=14 Score=25.82 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred CCEEEEEEECCCCCC-------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP-------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP-------~~pP~v~f~t 84 (105)
.|.|.|+-++|--|| ..||.|+|.-
T Consensus 135 ~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~V 166 (241)
T 2bum_B 135 NGYYVFRTIKPGPYPWRNRINEWRPAHIHFSL 166 (241)
T ss_dssp TSEEEEEEECCCCEEESSSTTEEECSEEEEEE
T ss_pred CceEEEEEecCCccccCCCCCCCcCceEEEEE
Confidence 589999999999998 4799999874
No 68
>2d37_A Hypothetical NADH-dependent FMN oxidoreductase; flavin reductase; HET: FMN NAD; 1.70A {Sulfolobus tokodaii} PDB: 2d36_A* 2d38_A*
Probab=43.42 E-value=11 Score=24.67 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=24.0
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|+||..+|+.|+++|.
T Consensus 60 ~~PPlv~v~i~~~~~T~~~i~~sg~F~Vnvl~ 91 (176)
T 2d37_A 60 LNPPLVSFFADRMKGNDIPYKESKYFVVNFTD 91 (176)
T ss_dssp TTTTEEEEEEEGGGTTTHHHHTCSEEEEEEEC
T ss_pred CCCCEEEEEECCCchHHHHHHhCCeEEEEchh
Confidence 4689987762 15679999999999999974
No 69
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=42.98 E-value=16 Score=25.55 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=22.4
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEec
Q 034040 60 NETFELQVDFPEHYPM-------EAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP~-------~pP~v~f~t 84 (105)
.|.|.|+-++|--||. .||.|.|.-
T Consensus 134 ~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~V 165 (238)
T 3t63_M 134 DGYYSFRTIKPGPAPWRNGPNDWRPAHIYFGI 165 (238)
T ss_dssp TSEEEEEEECCCCEEESSSTTEEECSEEEEEE
T ss_pred CceEEEEEECCcCccCCCCCCCCcCCeEEEEE
Confidence 5899999999999986 799999984
No 70
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=42.44 E-value=16 Score=26.54 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-++|.-|| ..||.|.|.-
T Consensus 188 ~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~V 230 (312)
T 2xsu_A 188 NGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYFV 230 (312)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEEE
T ss_pred CceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEEE
Confidence 589999999999998 5689988873
No 71
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=41.47 E-value=17 Score=26.16 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 59 ANETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 59 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
+.|.|.|+-++|.-|| ..||.|+|.-
T Consensus 183 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~V 226 (293)
T 1tmx_A 183 PDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFMV 226 (293)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEEE
T ss_pred CCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEEE
Confidence 3589999999999998 4599999874
No 72
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=41.40 E-value=17 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-++|.-|| ..||.|+|.-
T Consensus 184 ~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~V 226 (311)
T 2azq_A 184 EGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFFI 226 (311)
T ss_dssp TCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEEE
T ss_pred CceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEEE
Confidence 589999999999998 5699999873
No 73
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=40.94 E-value=19 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.7
Q ss_pred CEEEEEEECCCCCCCC-----CCeEEEec
Q 034040 61 ETFELQVDFPEHYPME-----APQVIFLP 84 (105)
Q Consensus 61 g~f~~~i~fp~~yP~~-----pP~v~f~t 84 (105)
|.|.|+-++|--||.. ||.|+|.-
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~V 130 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINISL 130 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEEE
Confidence 8999999999999987 89988874
No 74
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=40.00 E-value=18 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=21.6
Q ss_pred CCEEEEEEECCCCCCC------------------CCCeEEEec
Q 034040 60 NETFELQVDFPEHYPM------------------EAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP~------------------~pP~v~f~t 84 (105)
.|.|.|+-++|.-||. .||.|+|.-
T Consensus 181 ~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~V 223 (290)
T 3n9t_A 181 DGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFMI 223 (290)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEEE
T ss_pred CceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEEE
Confidence 4899999999999993 689998873
No 75
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=39.22 E-value=29 Score=15.62 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 034040 14 KIASNRLQKELVEWQV 29 (105)
Q Consensus 14 ~~~~~Rl~~E~~~l~~ 29 (105)
....+||.+|.-.++.
T Consensus 7 danvkrlekevgkleg 22 (28)
T 4dac_A 7 DANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhhhhh
Confidence 3568999999988764
No 76
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=38.41 E-value=21 Score=25.15 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-++|.-|| ..||.|+|.-
T Consensus 154 ~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~V 196 (254)
T 2boy_A 154 NGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWII 196 (254)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEEE
T ss_pred CceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEEE
Confidence 489999999999887 4789999873
No 77
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=38.37 E-value=7.1 Score=17.40 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=6.8
Q ss_pred CCeEEEecCCCccc
Q 034040 77 APQVIFLPPAPLHP 90 (105)
Q Consensus 77 pP~v~f~tp~i~HP 90 (105)
-|.-.|.. |.|||
T Consensus 7 lpenyfse-rpyhp 19 (26)
T 2jrw_A 7 LPENYFSE-RPYHP 19 (26)
T ss_dssp CSSSSCCS-SSCCS
T ss_pred cchhhccc-CCCCC
Confidence 33334555 66666
No 78
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=37.77 E-value=20 Score=25.96 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-++|.-|| ..||.|+|.-
T Consensus 187 ~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~V 229 (311)
T 1dmh_A 187 NGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYFV 229 (311)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEEE
T ss_pred CceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEEE
Confidence 489999999999997 4699999873
No 79
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=36.13 E-value=20 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 034040 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (105)
Q Consensus 60 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 84 (105)
.|.|.|+-++|.-|| ..||.|+|.-
T Consensus 183 dG~y~F~TI~Pg~Yp~p~dGp~G~lL~~~grh~~RpaHIH~~V 225 (280)
T 3hhy_A 183 EGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLIV 225 (280)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECSCEEEEE
T ss_pred CceEEEEEECCcCcCCCCCCcHHHHHHhcCCCCCCCcEEEEEE
Confidence 489999999998887 4689888873
No 80
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=35.86 E-value=21 Score=21.10 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHHHH
Q 034040 13 SKIASNRLQKELVEW 27 (105)
Q Consensus 13 s~~~~~Rl~~E~~~l 27 (105)
.-..+||+++||+=|
T Consensus 60 ~LsQLKRvQRdlrGL 74 (87)
T 2rf4_B 60 SISQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCC
Confidence 456789999999876
No 81
>2ecu_A Flavin reductase (HPAC) of 4-hydroxyphenylacetate monooxygnease; flavin diffusible, two-component monooxyge oxidoreductase; HET: 1PG 12P; 1.30A {Thermus thermophilus} PDB: 2ecr_A* 2ed4_A*
Probab=35.49 E-value=8.6 Score=24.31 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|+||..+|+.|+++|.
T Consensus 40 ~~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~ 71 (149)
T 2ecu_A 40 LEPPLVALAVSERAKLLPVLEGAGAFTVSLLR 71 (149)
T ss_dssp TTTTEEEEEEETTCTHHHHHHHHTEEEEEECB
T ss_pred CCCCEEEEEECCCChhHHHHHhCCEEEEEECc
Confidence 4689887772 15679999999999999985
No 82
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=35.19 E-value=70 Score=18.97 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEec
Q 034040 59 ANETFELQVDFPEHYPMEAPQVIFLP 84 (105)
Q Consensus 59 ~gg~f~~~i~fp~~yP~~pP~v~f~t 84 (105)
.+..+...|.|+..|. .+|+|.+--
T Consensus 27 g~R~~~~~V~F~~~F~-~~P~V~v~l 51 (101)
T 2ccv_A 27 NTRELAKNITFASPYC-RPPVVLLSI 51 (101)
T ss_dssp SCEEEEEEEECSSCCS-SCCEEEEEE
T ss_pred cceEEEEEeEeCcccC-CCCEEEEEe
Confidence 4457888999999999 599987664
No 83
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=33.64 E-value=33 Score=24.18 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=19.8
Q ss_pred CCEEEEEEECCCCC------------------CCCCCeEEEe
Q 034040 60 NETFELQVDFPEHY------------------PMEAPQVIFL 83 (105)
Q Consensus 60 gg~f~~~i~fp~~y------------------P~~pP~v~f~ 83 (105)
.|.|.|+-++|.-| |..|+.|+|.
T Consensus 151 ~G~y~F~TI~P~~Ypip~dGp~g~ll~~~gr~~~RpaHIHf~ 192 (260)
T 3th1_A 151 QGNYRVRTTMPVPYQIPYEGPTGRLLGHLGSHTWRPAHVHFK 192 (260)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHTTCCSEECCEEEEE
T ss_pred CCEEEEEEECCCCCCCCCCCcHHHHHHhcCCCCCCCCeEEEE
Confidence 48999999999766 4578888887
No 84
>4hx6_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.89A {Streptomyces globisporus}
Probab=33.47 E-value=11 Score=24.92 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=23.9
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 57 ~~PPlv~v~i~~~~~T~~~i~~~g~F~Vnvl~ 88 (185)
T 4hx6_A 57 LSPPLVLICVGKDAVMHQRLTALPTFAVSVLE 88 (185)
T ss_dssp TTTTEEEEEEETTSHHHHHHHHSCEEEEEECB
T ss_pred CCCCEEEEEECCCcHHHHHHHHCCeEEEEECC
Confidence 4689888862 15668899999999999985
No 85
>2qck_A Flavin reductase domain protein; YP_831077.1, flavin reducta domain, structural genomics, joint center for structural GE JCSG; 1.90A {Arthrobacter SP}
Probab=33.00 E-value=12 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.9
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|++|..+|+.|+++|.
T Consensus 48 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~ 79 (167)
T 2qck_A 48 AQPPRFTFNMARSSSSWPAIANTTHIGVHMLG 79 (167)
T ss_dssp ETTEEEEEEEETTSTTHHHHHHCCEEEEEECB
T ss_pred cCCCEEEEEECCCCchHHHHHhCCeEEEEECc
Confidence 3688887762 15679999999999999984
No 86
>2r0x_A Possible flavin reductase; split barrel-like, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE SO4; 1.06A {Haemophilus somnus 129PT}
Probab=31.62 E-value=9.5 Score=24.27 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=23.2
Q ss_pred CCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 76 EAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 76 ~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
.||.|.|.- .+--|+||..+|+.|+++|.
T Consensus 44 ~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~ 74 (158)
T 2r0x_A 44 SPPTLLVCINSNARAYEHFVKNRVLMVNTLT 74 (158)
T ss_dssp TTEEEEEEEETTSTTHHHHHHHCEEEEEECB
T ss_pred CCCEEEEEeCCCChHHHHHHhCCEEEEEeCC
Confidence 578877762 15679999999999999985
No 87
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=30.48 E-value=47 Score=16.63 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHh
Q 034040 15 IASNRLQKELVEWQ 28 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~ 28 (105)
...+||..|++++.
T Consensus 28 ~~~~~~~~~~~~~~ 41 (42)
T 3g9r_A 28 SKIKRIENEIKRIK 41 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 45789999999875
No 88
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=29.64 E-value=45 Score=23.34 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEECCCCCCCCCCeEEEecCC
Q 034040 65 LQVDFPEHYPMEAPQVIFLPPA 86 (105)
Q Consensus 65 ~~i~fp~~yP~~pP~v~f~tp~ 86 (105)
+-|.+|++||=-|=+++|..|+
T Consensus 83 iiIrmPkDfpPf~~kl~FR~P~ 104 (241)
T 3mmg_A 83 IVIKMAKDFPPFPQKLKFRQPT 104 (241)
T ss_dssp EEEECCTTSCCCCSCCCBCCCC
T ss_pred EEEeCCCCCCCcchhcccCCCC
Confidence 5678899999888889999873
No 89
>1yoa_A Putative flavoprotein; HB8, FAD, structural genomics, riken structura genomics/proteomics initiative, RSGI, unknown function; HET: FAD FMN; 1.90A {Thermus thermophilus} SCOP: b.45.1.2 PDB: 1wgb_A*
Probab=29.45 E-value=10 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.+.- .+--|+||..+|+.|+++|.
T Consensus 41 ~~Pp~v~v~i~~~~~t~~~i~~~~~f~Vnvl~ 72 (159)
T 1yoa_A 41 FQPPLVAVGLKRDSHLHALVERTGKLALMTLA 72 (159)
T ss_dssp TTTTEEEEEEESSSHHHHHHHHHCEEEEEECB
T ss_pred cCCCEEEEEECCCCchHHHHHhCCeEEEEECc
Confidence 3678877762 15678999999999999985
No 90
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=29.20 E-value=44 Score=14.74 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHh
Q 034040 15 IASNRLQKELVEWQ 28 (105)
Q Consensus 15 ~~~~Rl~~E~~~l~ 28 (105)
...+.|++|+++-+
T Consensus 8 nlqkkirkelkqrq 21 (26)
T 1m46_B 8 NLQKKIRKELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35688899988643
No 91
>1usc_A Putative styrene monooxygenase small component; FMN-binding protein, structural genomics, riken structural genomics/proteomics initiative; HET: FMN; 1.24A {Thermus thermophilus} SCOP: b.45.1.2 PDB: 1usf_A*
Probab=28.56 E-value=10 Score=24.57 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=23.7
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|+||..+|+.|+++|.
T Consensus 45 ~~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnil~ 76 (178)
T 1usc_A 45 ADPPLFGVSISPKRFTHGLLLKARRFSASFHP 76 (178)
T ss_dssp TTTTEEEEEECTTSHHHHHHHHHCEEEEEECB
T ss_pred CCCCEEEEEECCCchHHHHHHHCCeEEEEeCC
Confidence 4688887772 15668999999999999984
No 92
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=27.67 E-value=44 Score=23.52 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=20.8
Q ss_pred CCCEEEEEEECCCCCC-------------------CCCCeEEEe
Q 034040 59 ANETFELQVDFPEHYP-------------------MEAPQVIFL 83 (105)
Q Consensus 59 ~gg~f~~~i~fp~~yP-------------------~~pP~v~f~ 83 (105)
+.|.|.|+-++|.-|| ..||.|+|.
T Consensus 155 ~~G~y~F~TI~Pg~Yp~p~dgp~G~ll~a~~grh~~RpaHIHf~ 198 (257)
T 3o5u_A 155 EDGSIEFHSIRPVPYEIPKAGPTGQLMNSYLGRHSWRPAHIHIR 198 (257)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHTTTSSCCEECCCEEEE
T ss_pred CCceEEEEEECCCCcCCCCCCchhhhhhhhccCCCCCCceEEEE
Confidence 3589999999999996 367888887
No 93
>3e4v_A NADH:FMN oxidoreductase like protein; YP_544701.1, structural genomics, joint center for structural genom JCSG; HET: MSE FMN; 1.40A {Methylobacillus flagellatus KT}
Probab=26.77 E-value=16 Score=23.85 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=23.2
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 45 ~~PPlv~v~i~~~~~t~~~i~~~g~F~Vnvl~ 76 (186)
T 3e4v_A 45 HEPPLVGAIIGPWDYSHQALSETGECVLAVPT 76 (186)
T ss_dssp TTTTEEEEECCTTSTHHHHHHHHCEEEEEECC
T ss_pred CCCCEEEEEEcChhHHHHHHHHCCeEEEEeCC
Confidence 3688887762 14568899999999999985
No 94
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=26.76 E-value=50 Score=22.90 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=18.6
Q ss_pred EEEECCCCCCCCCCeEEEecCC
Q 034040 65 LQVDFPEHYPMEAPQVIFLPPA 86 (105)
Q Consensus 65 ~~i~fp~~yP~~pP~v~f~tp~ 86 (105)
+-|.+|+|+|=-|=+++|..|+
T Consensus 91 iiIrmPkDfpPf~~~l~FR~P~ 112 (229)
T 1lvm_A 91 IIIRMPKDFPPFPQKLKFREPQ 112 (229)
T ss_dssp EEEECCTTSCCCCSCCCBCCCC
T ss_pred EEEeCCCcCCCcccccccCCCC
Confidence 5678999999888889898873
No 95
>3bnk_A Flavoredoxin; protein-FMN complex, electron transport; HET: FMN; 2.05A {Methanosarcina acetivorans}
Probab=26.55 E-value=15 Score=24.25 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=23.6
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--++||..+|+.|+++|.
T Consensus 42 ~~PP~v~v~i~~~s~T~~~i~~~~~F~Vnil~ 73 (196)
T 3bnk_A 42 ANPPMLGVGVNKSHYTPEGIAENGSFSVNFPY 73 (196)
T ss_dssp TTTTEEEEEEETTSSHHHHHHHHTEEEEEECB
T ss_pred CCCCEEEEEECCcchHHHHHHHCCeEEEEECC
Confidence 3688877762 25678999999999999985
No 96
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=25.78 E-value=17 Score=19.18 Aligned_cols=12 Identities=17% Similarity=0.528 Sum_probs=10.1
Q ss_pred CCccccccCCCc
Q 034040 86 APLHPHIYSNGH 97 (105)
Q Consensus 86 ~i~HPnv~~~G~ 97 (105)
.-|||.++.+|+
T Consensus 13 ~~YHPg~~~~g~ 24 (50)
T 2ys2_A 13 VKYHSGFFVDGK 24 (50)
T ss_dssp CCCCSSCEETTE
T ss_pred hhcCCCcccCCe
Confidence 369999998887
No 97
>1i0r_A Conserved hypothetical protein; six stranded antiparallel beta-barrel, FMN and NADP+ binding domain, oxidoreductase; HET: FMN; 1.50A {Archaeoglobus fulgidus} SCOP: b.45.1.2 PDB: 1i0s_A*
Probab=25.63 E-value=10 Score=24.43 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=23.5
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|-|.- .+--|+||..+|+.|+++|.
T Consensus 37 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~ 68 (169)
T 1i0r_A 37 SKPVQIAVCLNKENDTHNAVKESGAFGVSVLE 68 (169)
T ss_dssp TTTTEEEEEEETTSHHHHHHHHHSEEEEEEEB
T ss_pred CCCCEEEEEECCCchhHHHHHhCCEEEEEeCC
Confidence 3688887762 15668999999999999874
No 98
>3cb0_A 4-hydroxyphenylacetate 3-monooxygenase; corrin reductase, COBR, six-stranded anti-parallel beta- barrel, oxidoreductase; HET: FMN; 1.60A {Brucella melitensis}
Probab=24.81 E-value=16 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 76 EAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 76 ~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
.||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 55 ~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~ 85 (173)
T 3cb0_A 55 NPPTILICLQKIHEENRIFIENGVFAINTLA 85 (173)
T ss_dssp TTEEEEEEEESSSGGGHHHHHHTEEEEEECB
T ss_pred CCCEEEEEeCCCchHHHHHhhCCEEEEEeCC
Confidence 678876661 25679999999999999985
No 99
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=24.41 E-value=28 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 57 ~~PPlv~v~i~~~s~T~~~i~~sg~F~VnvL~ 88 (321)
T 3rh7_A 57 LDPPLLLVCLAKSSRNYESMTSAGRFAINVLS 88 (321)
T ss_dssp TTTTEEEEEEETTCSSHHHHHHCSEEEEEECB
T ss_pred CCCCEEEEEECCcchHHHHHHhCCeEEEEECC
Confidence 3688888762 15678999999999999985
No 100
>1rz1_A Phenol 2-hydroxylase component B; flavin, NAD, oxidoreductase; HET: FAD NAD; 2.10A {Geobacillus thermoglucosidasius} SCOP: b.45.1.2 PDB: 1rz0_A*
Probab=24.21 E-value=14 Score=23.43 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 76 EAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 76 ~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
.||.|.+.- .+--|.||..+|+.|+++|.
T Consensus 42 ~Pp~v~v~i~~~s~T~~~i~~~~~F~Vnvl~ 72 (161)
T 1rz1_A 42 NPKLVLVSIGEKAKMLEKIQQSKKYAVNILS 72 (161)
T ss_dssp TTTEEEEEEETTCHHHHHHHHHCEEEEEECB
T ss_pred CCCEEEEEeCCCCchHHHHhhCCcEEEEECC
Confidence 688877762 25678999999999999884
No 101
>3nfw_A Flavin reductase-like, FMN-binding protein; seattle structural genomics center for infectious disease, S mycobacterium; 1.60A {Mycobacterium thermoresistibile}
Probab=24.19 E-value=13 Score=25.18 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec--CCCccccccCCCc
Q 034040 21 QKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP--PAPLHPHIYSNGH 97 (105)
Q Consensus 21 ~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t--p~i~HPnv~~~G~ 97 (105)
.+++++.....+.++.+.- .++ ..-++... . .| ..+. ..||.|.|.- .+--|.||..+|+
T Consensus 30 ~~~fr~am~~~p~gV~vVTt~~~-g~~ngmt~---S------sf-~svS------~dPPlv~v~v~~~s~T~~~I~~sg~ 92 (210)
T 3nfw_A 30 QRTFRRVLGQFCTGVTIITTVHE-GNPVGFAC---Q------SF-AALS------LDPPLVLFCPTKVSRSWKAIEASGR 92 (210)
T ss_dssp HHHHHHHHTTSCBCCEEEEEEET-TEEEEEEE---C------CE-EEEE------TTTTEEEECCBTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHhCCCCcEEEEEecC-CeEEEEEe---c------cc-hhhc------CCCCEEEEEECCCchHHHHHHHCCe
Confidence 4567778787788877655 211 11111111 0 01 1222 3689988863 1556889999999
Q ss_pred eEEecCC
Q 034040 98 ICLGIAS 104 (105)
Q Consensus 98 iCl~iL~ 104 (105)
.|+++|.
T Consensus 93 F~VniL~ 99 (210)
T 3nfw_A 93 FCVNILH 99 (210)
T ss_dssp EEEEECB
T ss_pred EEEEECC
Confidence 9999985
No 102
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.89 E-value=25 Score=19.55 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=9.8
Q ss_pred CccccccCCCc
Q 034040 87 PLHPHIYSNGH 97 (105)
Q Consensus 87 i~HPnv~~~G~ 97 (105)
-|||.++.+|+
T Consensus 14 ~yHPg~~~~Gk 24 (64)
T 2e6i_A 14 KYHPNFWMDGK 24 (64)
T ss_dssp EECSSCBCSSS
T ss_pred hcCCCceeCCe
Confidence 59999999887
No 103
>1eje_A FMN-binding protein; structural genomics, PSI, protein struc initiative; HET: FMN; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.2
Probab=23.06 E-value=15 Score=24.06 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=23.8
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 54 ~~Pp~v~v~i~~~~~T~~~i~~~~~F~Vnvl~ 85 (192)
T 1eje_A 54 IDPPVVAFASAPDHHTARNIESTHEFVINITP 85 (192)
T ss_dssp TTTTEEEEEECTTSHHHHHHHHHCEEEEEECB
T ss_pred CCCCEEEEEECCchHHHHHHHHCCcEEEEeCC
Confidence 3688887762 25678999999999999984
No 104
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.48 E-value=1.4e+02 Score=19.48 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCC
Q 034040 22 KELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72 (105)
Q Consensus 22 ~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~ 72 (105)
.|+++|.+ ..|+.+.. .+.-..|++++..|++ |. ++|+.|.+
T Consensus 6 ~~I~~WL~--eeG~~v~~~~~a~a~fH~~v~~P~~-p~------~dVIrP~~ 48 (165)
T 3cxj_A 6 EMIKKWLD--EEGFLRMEVPDENARFHYVVNYPED-HV------IDIIQPAG 48 (165)
T ss_dssp HHHHHHHH--HTTCEEEECCCTTEEEEEEEECSTT-CE------EEEEEESS
T ss_pred HHHHHHHH--HcCceEecCCCCCCceEEEEeCCCC-CE------EEEEeeCC
Confidence 45555555 34665554 4444588888886665 32 66776665
No 105
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=21.33 E-value=2e+02 Score=19.61 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=23.0
Q ss_pred EEcCCCCCCCC---CEEEEEEECCCCCCCCCCeEEEe
Q 034040 50 VNGAPGTLYAN---ETFELQVDFPEHYPMEAPQVIFL 83 (105)
Q Consensus 50 i~gp~~tpy~g---g~f~~~i~fp~~yP~~pP~v~f~ 83 (105)
+.-.++..|.| ..+...+.|++.|. .+|+|..-
T Consensus 169 i~t~d~~lwsG~g~r~~~~~V~F~~~F~-~~P~V~v~ 204 (257)
T 2vm9_A 169 VSIGDRSLNSGTGSRTIVRHVKFPVEFL-SVPIVSIG 204 (257)
T ss_dssp EECCSSTTSSCSSSEEEEEEEECSSCCS-SCCEEEEE
T ss_pred eEcCCcccccCCCCccEEEEEeCCCccC-CCCEEEEc
Confidence 33344445654 56788999999998 48998754
No 106
>2r6v_A Uncharacterized protein PH0856; FMN-binding protein, flavin reductase like DOMA structural genomics, joint center for structural genomics; HET: FMN; 1.25A {Pyrococcus horikoshii}
Probab=21.24 E-value=17 Score=23.93 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.7
Q ss_pred CCCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 55 ~~Pp~v~v~i~~~s~T~~~i~~~g~F~Vnvl~ 86 (191)
T 2r6v_A 55 FDPFIVGVAVAPKRTTHKLIKKYGEFVISVPS 86 (191)
T ss_dssp TTTTEEEEEECTTSHHHHHHHHHSEEEEEECB
T ss_pred CCCCEEEEEECCCchHHHHHHHCCEEEEEeCC
Confidence 4689887762 25668899999999999984
No 107
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.24 E-value=71 Score=14.30 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHh
Q 034040 16 ASNRLQKELVEWQ 28 (105)
Q Consensus 16 ~~~Rl~~E~~~l~ 28 (105)
...||.+|++.++
T Consensus 8 knarlkqeiaale 20 (28)
T 3ra3_B 8 KNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 4568888887764
No 108
>3k86_A Chlorophenol-4-monooxygenase component 1; NADH:FAD oxidoreductase, oxidoreductase; 2.00A {Burkholderia cepacia} PDB: 3k87_A* 3k88_A*
Probab=21.12 E-value=13 Score=24.51 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCCeEEEec--CCCccccccCCCceEEecCC
Q 034040 76 EAPQVIFLP--PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 76 ~pP~v~f~t--p~i~HPnv~~~G~iCl~iL~ 104 (105)
.||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 58 ~PPlv~v~i~~~~~T~~~i~~sg~F~Vnvl~ 88 (185)
T 3k86_A 58 RPPTVLLCINRKSYAAGIIKSNGVLSVNWLA 88 (185)
T ss_dssp TTEEEEEEEETTSHHHHHHHHHCEEEEEECB
T ss_pred CCCEEEEEECCCchHHHHHHHCCeEEEEECc
Confidence 688887762 15678899999999999985
No 109
>3fge_A Putative flavin reductase with split barrel domai; YP_750721.1; 1.74A {Shewanella frigidimarina ncimb 400}
Probab=20.40 E-value=10 Score=25.19 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCCCeEEEec-----CCCccccccCCCceEEecCC
Q 034040 75 MEAPQVIFLP-----PAPLHPHIYSNGHICLGIAS 104 (105)
Q Consensus 75 ~~pP~v~f~t-----p~i~HPnv~~~G~iCl~iL~ 104 (105)
..||.|.|.- .+--|.||..+|+.|+++|.
T Consensus 55 ~~PPlv~v~i~~~~~~~~T~~~i~~~g~F~Vnvl~ 89 (203)
T 3fge_A 55 ANPPLMGMIIRPHSVPRHTFENIMQTGLYTINHVN 89 (203)
T ss_dssp ETTEEEEEEECC---CHHHHHHHHHHCEEEEEECB
T ss_pred CCCCEEEEEeCCCCCccHHHHHHHHCCcEEEEECC
Confidence 4688887753 13468899999999999884
Done!