BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034043
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like Modifier
Protein Isoform 2 (Sumo-2)
Length = 95
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 15 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 69
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F F
Sbjct: 3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62
Query: 70 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
DG+ + TP +LEMED D ID QTGG
Sbjct: 63 DGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To Sumo-3
Length = 93
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 15 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 69
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F F
Sbjct: 3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62
Query: 70 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100
DG+ + TP +LEMED D ID QTGG
Sbjct: 63 DGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With Presumo-3
Length = 94
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 52/78 (66%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 66
Query: 84 EMEDGDEIDAMLHQTGGA 101
EMED D ID QTGG
Sbjct: 67 EMEDEDTIDVFQQQTGGV 84
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-2
Length = 91
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 52/78 (66%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 64
Query: 84 EMEDGDEIDAMLHQTGGA 101
EMED D ID QTGG
Sbjct: 65 EMEDEDTIDVFQQQTGGV 82
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 52/78 (66%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 62
Query: 84 EMEDGDEIDAMLHQTGGA 101
EMED D ID QTGG
Sbjct: 63 EMEDEDTIDVFQQQTGGV 80
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 81
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 52/77 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 64
Query: 84 EMEDGDEIDAMLHQTGG 100
EMED D ID QTGG
Sbjct: 65 EMEDEDTIDVFQQQTGG 81
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 52/77 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 62
Query: 84 EMEDGDEIDAMLHQTGG 100
EMED D ID QTGG
Sbjct: 63 EMEDEDTIDVFQQQTGG 79
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 52/77 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 4 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 63
Query: 84 EMEDGDEIDAMLHQTGG 100
EMED D ID QTGG
Sbjct: 64 EMEDEDTIDVFQQQTGG 80
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQT 79
+++A + +KV DG E+FFRIK T LKKL++ YC +Q + NS+ FLFDG + +T
Sbjct: 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKT 81
Query: 80 PDELEMEDGDEIDAMLHQTGG 100
P+EL MED D IDAM+ QTGG
Sbjct: 82 PEELGMEDDDVIDAMVEQTGG 102
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 15 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 69
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F F
Sbjct: 10 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69
Query: 70 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
DG+ + TP +LEMED D ID QT G
Sbjct: 70 DGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
D+K ++ HINLKV GQD V F+IK+ T L+KLMNAYCDR + + + F FDG+ +
Sbjct: 3 DEKKGGETEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPI 62
Query: 75 RGEQTPDELEMEDGDEIDAMLHQTGG 100
TP LEME+GD I+ QTGG
Sbjct: 63 NENDTPTSLEMEEGDTIEVYQQQTGG 88
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 13 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
R++ +QTP++L+MED D I+A Q GGA
Sbjct: 71 RIQADQTPEDLDMEDNDIIEAHREQIGGA 99
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 51/77 (66%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AY +RQ + + I F FDG+ + TP +L
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRFDGQPINETDTPAQL 62
Query: 84 EMEDGDEIDAMLHQTGG 100
EMED D ID QTGG
Sbjct: 63 EMEDEDTIDVFQQQTGG 79
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
R++ +QTP++L+MED D I+A Q GG+
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGS 97
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
R++ +QTP++L+MED D I+A Q GG+
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGS 97
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
R++ +QTP++L+MED D I+A Q GG+
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGS 97
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 23 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 82
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 83 GMEEEDVIEVYQEQTGG 99
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
R++ +QTP++L+MED D I+A Q GG+
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGS 97
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 62 GMEEEDVIEVYQEQTGG 78
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGGA 101
R++ +QTP++L+MED D I+A Q GG+
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGS 97
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 62 GMEEEDVIEVYQEQTGG 78
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2 Enhances
Daxx Sumo Binding Activity
Length = 99
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 23 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 82
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 83 GMEEEDVIEVYQEQTGG 99
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 62 GMEEEDVIEVYQEQTGG 78
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 80
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 81 GMEEEDVIEVYQEQTGG 97
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 1 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 60
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 61 GMEEEDVIEVYQEQTGG 77
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 62
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 63 GMEEEDVIEVYQEQTGG 79
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 4 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 63
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 64 GMEEEDVIEVYQEQTGG 80
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola Virus
Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola Virus
Vp30 (Strain Reston-89)
Length = 227
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGG 100
R++ +QTP++L+MED D I+A Q GG
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGG 96
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 6 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 65
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 66 GMEEEDVIEVYQEQTGG 82
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 63/90 (70%), Gaps = 3/90 (3%)
Query: 12 QEEDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD 70
+ E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+D
Sbjct: 17 KPEVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 74
Query: 71 GRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100
G R++ +QTP++L+MED D I+A Q GG
Sbjct: 75 GIRIQADQTPEDLDMEDNDIIEAHREQIGG 104
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 13 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGG 100
R++ +QTP++L+MED D I+A Q GG
Sbjct: 71 RIQADQTPEDLDMEDNDIIEAHREQIGG 98
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 21 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 78
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGG 100
R++ +QTP++L+MED D I+A Q GG
Sbjct: 79 RIQADQTPEDLDMEDNDIIEAHREQIGG 106
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 1 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 58
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGG 100
R++ +QTP++L+MED D I+A Q GG
Sbjct: 59 RIQADQTPEDLDMEDNDIIEAHREQIGG 86
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGG 100
R++ +QTP++L+MED D I+A Q GG
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGG 96
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 60
Query: 84 EMEDGDEIDAM 94
EMED D ID
Sbjct: 61 EMEDEDTIDVF 71
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 47 EVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGI 104
Query: 73 RLRGEQTPDELEMEDGDEIDAMLHQTGG 100
++ +QTP++L+MED D I+A Q GG
Sbjct: 105 EIQADQTPEDLDMEDNDIIEAHREQIGG 132
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP +L
Sbjct: 6 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 65
Query: 84 EMEDGDEIDAM 94
EMED D ID
Sbjct: 66 EMEDEDTIDVF 76
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 80
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ Q GG
Sbjct: 81 GMEEEDVIEVYQEQCGG 97
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Query: 12 QEEDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD 70
+ E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+D
Sbjct: 18 KPEVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 75
Query: 71 GRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100
G R++ +Q P++L+MED D I+A Q GG
Sbjct: 76 GIRIQADQAPEDLDMEDNDIIEAHREQIGG 105
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 59/79 (74%), Gaps = 3/79 (3%)
Query: 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPD 81
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG R++ +QTP+
Sbjct: 8 THINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPE 65
Query: 82 ELEMEDGDEIDAMLHQTGG 100
+L+MED D I+A Q GG
Sbjct: 66 DLDMEDNDIIEAHREQIGG 84
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +Y RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 23 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKEL 82
Query: 84 EMEDGDEIDAMLHQTGG 100
ME+ D I+ QTGG
Sbjct: 83 GMEEEDVIEVYQEQTGG 99
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP EL
Sbjct: 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 99
Query: 84 EMEDGDEIDAMLHQTG 99
ME+ D I+ Q G
Sbjct: 100 GMEEEDVIEVYQEQCG 115
>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|D Chain D, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 84
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPD 81
HINL V DG+ E+FF I +T L++LM A+ RQ E++S+ FL+DG R++ +QTP+
Sbjct: 8 THINLXVS--DGSSEIFFXIXXTTPLRRLMEAFAXRQGXEMDSLRFLYDGIRIQADQTPE 65
Query: 82 ELEMEDGDEIDAMLHQTGG 100
+L+MED D I+A Q GG
Sbjct: 66 DLDMEDNDIIEAHREQIGG 84
>pdb|2JXX|A Chain A, Nmr Solution Structure Of Ubiquitin-Like Domain Of
Nfatc2ip. Northeast Structural Genomics Consortium
Target Hr5627
Length = 97
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 19 VDQSAHINLKVKGQDGNEVF-FRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE 77
+ S + L+V+G++ ++ + R + LK LM+ Y + + ++F FDG +L G
Sbjct: 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGR 79
Query: 78 QTPDELEMEDGDEIDAM 94
+ P +L ME GD I+
Sbjct: 80 ELPADLGMESGDLIEVW 96
>pdb|3RD2|A Chain A, Nip45 Sumo-Like Domain 2
Length = 82
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 22 SAHINLKVKGQDGNEVF-FRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80
S + L+V+G++ ++ + R + LK LM+ Y + + ++F FDG +L G + P
Sbjct: 8 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELP 67
Query: 81 DELEMEDGDEIDA 93
+L ME GD I+
Sbjct: 68 ADLGMESGDLIEV 80
>pdb|3A4R|A Chain A, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4R|B Chain B, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4S|C Chain C, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|D Chain D, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 79
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 22 SAHINLKVKGQDGNEVF-FRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80
S + L+V+G++ +++ + + LK LM+ Y + + + ++F FDG +L G++ P
Sbjct: 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELP 64
Query: 81 DELEMEDGDEIDAM 94
+L +E GD I+
Sbjct: 65 ADLGLESGDLIEVW 78
>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Appnp
pdb|1E9D|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Aztmp And Adp
pdb|1E9E|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Dtmp And Adp
Length = 215
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 43 RSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 48 RSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A
Magnesium-Ion
pdb|1E2E|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate,A Magnesium-Ion
And Alf3
pdb|1E2F|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A
Magnesium-Ion
pdb|1E2G|A Chain A, Human Thymidylate Kinase Complexed With Adp, Tdp And A
Magnesium-Ion
pdb|1E2Q|A Chain A, Human Thymidylate Kinase Complexed With Tp5a And A
Magnesium-Ion
pdb|1E99|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Adp
pdb|1E9A|A Chain A, Human Thymidylate Kinase Complexed With The Bisubstrate
Inhibitor Aztp5a
pdb|1E9B|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Appnp
pdb|1NMX|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Adp
pdb|1NMZ|A Chain A, Crystal Structure Of Human Thymidylate Kinase With
Nh2tmp And Appnhp
pdb|1NN0|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Adp
pdb|1NN1|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Appnhp
pdb|1NN3|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp
+ Adp
pdb|1NN5|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp
+ Appnhp
Length = 215
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 43 RSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 48 RSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Adp
Length = 217
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 43 RSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 48 RSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl
Phosphonate Monophosphate And Adp
Length = 232
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 43 RSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 65 RSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 101
>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
And Adp
Length = 215
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 43 RSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 48 RSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Appnhp
Length = 209
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 43 RSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 42 RSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 78
>pdb|3M62|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
Length = 106
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 59 SVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97
S E + I ++ G+ L+ +T E ++DGD++ M+ Q
Sbjct: 36 SCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 82 ELEMEDGDEIDAMLHQTGGALGS 104
+ +E D I A++H GGA GS
Sbjct: 56 DTSLESDDAIQALIHTPGGAFGS 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,859,759
Number of Sequences: 62578
Number of extensions: 96883
Number of successful extensions: 234
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 70
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)