Query 034043
Match_columns 105
No_of_seqs 105 out of 585
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wz0_A Ubiquitin-like protein 100.0 7.6E-31 2.6E-35 173.9 11.4 84 20-103 20-103 (104)
2 3kyd_D Small ubiquitin-related 100.0 5.6E-31 1.9E-35 177.5 10.7 81 19-99 35-115 (115)
3 2io0_B Small ubiquitin-related 100.0 1.1E-29 3.7E-34 164.7 10.8 81 22-102 3-83 (91)
4 2eke_C Ubiquitin-like protein 100.0 1.3E-29 4.6E-34 168.6 11.4 81 19-100 26-106 (106)
5 2k8h_A Small ubiquitin protein 100.0 6E-30 2E-34 171.2 9.1 86 16-101 18-103 (110)
6 2d07_B Ubiquitin-like protein 100.0 1.6E-29 5.6E-34 164.1 10.8 80 21-100 14-93 (93)
7 3tix_A Ubiquitin-like protein 100.0 3.8E-30 1.3E-34 186.6 8.6 93 10-103 42-135 (207)
8 2io1_B Small ubiquitin-related 100.0 3.7E-29 1.3E-33 162.9 10.7 82 21-102 4-85 (94)
9 2l76_A Nfatc2-interacting prot 99.9 1.3E-27 4.6E-32 155.8 10.7 74 22-96 19-92 (95)
10 3pge_A SUMO-modified prolifera 99.9 1.3E-27 4.3E-32 174.2 10.9 89 13-102 17-106 (200)
11 2jxx_A Nfatc2-interacting prot 99.9 1.5E-27 5E-32 156.6 9.7 75 20-94 21-96 (97)
12 3v7o_A Minor nucleoprotein VP3 99.9 7.6E-29 2.6E-33 181.8 0.4 86 16-102 12-98 (227)
13 3a4r_A Nfatc2-interacting prot 99.9 1.2E-26 4.1E-31 146.4 10.0 73 22-94 5-78 (79)
14 1wm3_A Ubiquitin-like protein 99.9 1.6E-26 5.4E-31 143.3 9.4 72 24-95 1-72 (72)
15 3uf8_A Ubiquitin-like protein 99.9 6E-25 2E-29 160.3 10.4 87 15-102 11-98 (209)
16 4da1_A Protein phosphatase 1K, 99.9 1.5E-25 5.3E-30 174.7 0.0 89 13-102 18-107 (389)
17 3ix6_A TS, tsase, thymidylate 99.9 1.7E-25 5.7E-30 174.6 0.2 88 14-102 11-98 (360)
18 3goe_A DNA repair protein RAD6 99.9 2E-21 6.9E-26 122.6 9.9 74 23-96 8-82 (82)
19 1wyw_B Ubiquitin-like protein 99.9 3.8E-21 1.3E-25 124.7 9.9 96 1-100 1-97 (97)
20 2uyz_B Small ubiquitin-related 99.8 4.4E-20 1.5E-24 114.4 9.3 78 23-100 2-79 (79)
21 4hcn_B Polyubiquitin, ubiquiti 99.7 5.2E-16 1.8E-20 100.3 9.5 90 11-100 9-98 (98)
22 3dbh_I NEDD8; cell cycle, acti 99.7 1.7E-15 5.8E-20 94.9 10.6 82 19-100 7-88 (88)
23 3n3k_B Ubiquitin; hydrolase, p 99.6 1.1E-15 3.8E-20 95.1 9.2 81 23-103 2-82 (85)
24 3mtn_B UBA80, ubcep1, ubiquiti 99.6 2.3E-15 7.8E-20 93.5 10.4 81 23-103 2-82 (85)
25 1ndd_A NEDD8, protein (ubiquit 99.6 1.6E-14 5.4E-19 87.7 9.7 76 25-100 1-76 (76)
26 3a9j_A Ubiquitin; protein comp 99.6 2.1E-14 7.2E-19 87.1 10.1 76 25-100 1-76 (76)
27 3phx_B Ubiquitin-like protein 99.6 3.6E-14 1.2E-18 87.5 10.9 77 23-99 3-79 (79)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 2E-14 6.8E-19 90.1 9.8 81 23-103 6-86 (87)
29 3vdz_A Ubiquitin-40S ribosomal 99.6 5.3E-14 1.8E-18 92.9 11.0 78 23-100 34-111 (111)
30 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 3.9E-14 1.3E-18 90.3 10.0 78 25-102 2-79 (96)
31 4fbj_B NEDD8; effector-HOST ta 99.5 7.9E-14 2.7E-18 88.3 9.5 78 25-102 1-78 (88)
32 1wy8_A NP95-like ring finger p 99.5 1.5E-13 5.2E-18 86.4 10.6 82 22-103 5-88 (89)
33 3v6c_B Ubiquitin; structural g 99.5 2.1E-13 7E-18 86.6 11.0 81 18-98 11-91 (91)
34 1j8c_A Ubiquitin-like protein 99.5 4.8E-13 1.6E-17 90.3 13.2 81 21-102 29-109 (125)
35 1sif_A Ubiquitin; hydrophobic 99.5 9.7E-14 3.3E-18 87.9 9.2 80 23-102 8-87 (88)
36 2ojr_A Ubiquitin; lanthide-bin 99.5 2.6E-13 9E-18 89.4 11.0 78 23-100 34-111 (111)
37 1wx8_A Riken cDNA 4931431F19; 99.5 2.2E-13 7.4E-18 87.1 9.7 80 22-102 15-94 (96)
38 4dwf_A HLA-B-associated transc 99.5 4.1E-13 1.4E-17 84.7 10.8 80 22-102 3-82 (90)
39 1yx5_B Ubiquitin; proteasome, 99.5 3E-13 1E-17 86.8 10.1 78 25-102 1-78 (98)
40 2hj8_A Interferon-induced 17 k 99.5 1.4E-13 4.7E-18 87.1 8.1 79 23-101 3-81 (88)
41 2l7r_A Ubiquitin-like protein 99.5 1.7E-13 6E-18 87.7 8.1 76 23-100 18-93 (93)
42 1wx7_A Ubiquilin 3; ubiquitin- 99.5 1.1E-12 3.9E-17 85.5 11.6 80 22-102 15-94 (106)
43 1yqb_A Ubiquilin 3; structural 99.4 1.3E-12 4.3E-17 84.9 10.2 83 19-102 17-99 (100)
44 1ttn_A DC-UBP, dendritic cell- 99.4 9.6E-13 3.3E-17 86.1 9.6 83 20-102 19-101 (106)
45 3rt3_B Ubiquitin-like protein 99.4 1.7E-12 5.9E-17 89.3 10.9 79 23-101 80-158 (159)
46 3plu_A Ubiquitin-like modifier 99.4 2.3E-12 7.9E-17 83.6 10.6 74 22-95 19-92 (93)
47 3b08_A Polyubiquitin-C, ubiqui 99.4 2.5E-12 8.6E-17 87.0 10.8 77 24-100 76-152 (152)
48 2dzi_A Ubiquitin-like protein 99.4 2.9E-12 9.8E-17 78.7 9.4 76 22-97 5-80 (81)
49 3u30_A Ubiquitin, linear DI-ub 99.4 3.1E-12 1.1E-16 89.4 10.7 87 15-101 11-97 (172)
50 2kan_A Uncharacterized protein 99.4 3.4E-12 1.2E-16 82.0 10.0 82 20-102 11-93 (94)
51 1uh6_A Ubiquitin-like 5; beta- 99.4 5.1E-12 1.8E-16 82.8 10.3 81 15-95 19-99 (100)
52 2kdi_A Ubiquitin, vacuolar pro 99.4 5.4E-12 1.9E-16 83.7 10.6 80 24-103 9-88 (114)
53 2faz_A Ubiquitin-like containi 99.4 6.9E-12 2.4E-16 76.9 10.2 74 24-97 2-77 (78)
54 2bwf_A Ubiquitin-like protein 99.4 7.1E-12 2.4E-16 76.3 10.0 72 25-97 5-76 (77)
55 3l0w_B Monoubiquitinated proli 99.4 4.9E-12 1.7E-16 89.2 10.0 78 25-102 1-78 (169)
56 1wgd_A Homocysteine-responsive 99.3 5.4E-12 1.8E-16 80.3 8.7 81 23-103 6-92 (93)
57 4eew_A Large proline-rich prot 99.3 1.7E-11 5.9E-16 76.8 10.4 75 21-96 14-88 (88)
58 3q3f_A Ribonuclease/ubiquitin 99.3 9.1E-12 3.1E-16 89.7 9.7 79 24-102 105-183 (189)
59 1we6_A Splicing factor, putati 99.3 9E-12 3.1E-16 81.9 8.7 80 23-102 26-109 (111)
60 1uel_A HHR23B, UV excision rep 99.3 2.7E-11 9.1E-16 77.5 10.5 78 25-102 1-81 (95)
61 1we7_A SF3A1 protein; structur 99.3 1.6E-11 5.4E-16 81.2 9.2 80 23-102 24-113 (115)
62 2wyq_A HHR23A, UV excision rep 99.3 5E-11 1.7E-15 73.9 10.9 75 23-97 4-81 (85)
63 2klc_A Ubiquilin-1; ubiquitin- 99.3 5E-11 1.7E-15 77.4 11.2 77 22-99 23-99 (101)
64 3b1l_X E3 ubiquitin-protein li 98.9 3.1E-13 1E-17 82.5 0.0 75 25-99 1-75 (76)
65 2daf_A FLJ35834 protein; hypot 99.3 5.2E-11 1.8E-15 80.1 10.8 78 20-97 11-89 (118)
66 3m62_B UV excision repair prot 99.3 2.1E-11 7.2E-16 79.7 8.0 75 25-99 2-76 (106)
67 1v5o_A 1700011N24RIK protein; 99.3 4.5E-11 1.5E-15 77.5 9.4 81 23-103 6-91 (102)
68 3u5e_m 60S ribosomal protein L 99.2 6.1E-13 2.1E-17 89.7 0.0 77 25-101 1-77 (128)
69 3u30_A Ubiquitin, linear DI-ub 99.2 5.1E-11 1.7E-15 83.2 9.1 77 24-100 96-172 (172)
70 3b08_A Polyubiquitin-C, ubiqui 99.2 9.4E-11 3.2E-15 79.2 10.1 76 25-100 1-76 (152)
71 1wia_A Hypothetical ubiquitin- 99.2 8.2E-11 2.8E-15 74.9 9.2 78 22-102 5-83 (95)
72 2kk8_A Uncharacterized protein 99.2 8.7E-11 3E-15 73.9 8.9 74 23-96 9-83 (84)
73 4a20_A Ubiquitin-like protein 99.2 1.3E-10 4.6E-15 75.5 9.8 77 21-97 16-96 (98)
74 3u5c_f 40S ribosomal protein S 99.2 1.3E-12 4.5E-17 91.1 0.0 77 25-101 1-77 (152)
75 1v2y_A 3300001G02RIK protein; 99.2 5.1E-11 1.8E-15 78.6 7.5 81 22-102 5-101 (105)
76 1wju_A NEDD8 ultimate buster-1 99.2 1.4E-10 4.8E-15 76.0 8.8 77 25-102 16-96 (100)
77 3m63_B Ubiquitin domain-contai 99.1 4.8E-11 1.6E-15 77.6 4.5 76 21-97 25-100 (101)
78 1v86_A DNA segment, CHR 7, way 99.1 4.8E-10 1.7E-14 71.9 7.9 82 15-98 8-89 (95)
79 2gow_A HCG-1 protein, ubiquiti 99.0 2.2E-09 7.4E-14 72.7 10.2 81 22-102 15-105 (125)
80 2lxa_A Ubiquitin-like protein 99.0 4.3E-10 1.5E-14 71.6 6.2 73 25-97 2-78 (87)
81 2kd0_A LRR repeats and ubiquit 99.0 2.6E-09 8.7E-14 67.1 9.0 65 32-96 19-83 (85)
82 4dbg_A Ranbp-type and C3HC4-ty 99.0 3.7E-09 1.3E-13 69.7 10.0 76 21-96 21-99 (105)
83 1x1m_A Ubiquitin-like protein 99.0 1.7E-09 5.9E-14 70.6 8.4 76 24-99 12-102 (107)
84 3rt3_B Ubiquitin-like protein 99.0 4E-09 1.4E-13 72.3 10.0 76 25-100 3-81 (159)
85 1se9_A Ubiquitin family; ubiqu 99.0 4.4E-09 1.5E-13 71.4 9.5 79 23-101 15-107 (126)
86 2fnj_B Transcription elongatio 99.0 3.9E-09 1.3E-13 70.9 9.0 75 25-101 3-84 (118)
87 1wgh_A Ubiquitin-like 3, HCG-1 99.0 2.7E-08 9.1E-13 66.5 12.8 79 22-100 14-102 (116)
88 1wxv_A BAG-family molecular ch 98.9 9.3E-09 3.2E-13 64.9 9.7 75 23-98 6-86 (92)
89 1wgg_A Ubiquitin carboxyl-term 98.9 4.3E-09 1.5E-13 67.7 8.0 72 23-96 6-78 (96)
90 2kdb_A Homocysteine-responsive 98.9 2.4E-09 8.2E-14 69.6 6.7 76 19-94 18-99 (99)
91 1v5t_A 8430435I17RIK protein; 98.9 3.5E-09 1.2E-13 67.0 6.5 72 24-96 7-82 (90)
92 3ai5_A Yeast enhanced green fl 98.9 1.2E-08 4E-13 78.2 10.3 77 22-98 231-307 (307)
93 2kjr_A CG11242; UBL, ubiquitin 98.9 2.4E-08 8.1E-13 64.4 9.7 74 21-94 12-93 (95)
94 4ajy_B Transcription elongatio 98.8 4.6E-08 1.6E-12 65.7 9.9 72 25-97 3-81 (118)
95 1wf9_A NPL4 family protein; be 98.8 1.1E-08 3.6E-13 66.9 5.8 72 24-96 7-94 (107)
96 2kj6_A Tubulin folding cofacto 98.8 4.1E-08 1.4E-12 63.5 8.0 75 21-95 11-94 (97)
97 1oqy_A HHR23A, UV excision rep 98.7 1.6E-08 5.3E-13 79.1 6.6 80 23-102 6-89 (368)
98 2xzm_9 RPS31E; ribosome, trans 98.7 1.3E-09 4.4E-14 78.5 0.2 73 25-102 1-73 (189)
99 1t0y_A Tubulin folding cofacto 98.7 1.4E-07 4.9E-12 62.9 9.4 73 23-95 5-85 (122)
100 1v6e_A Cytoskeleton-associated 98.7 7.5E-08 2.5E-12 61.4 7.6 72 24-95 7-86 (95)
101 2dzj_A Synaptic glycoprotein S 98.6 7.4E-08 2.5E-12 61.1 6.0 70 24-93 10-85 (88)
102 4b6w_A Tubulin-specific chaper 98.6 1.8E-07 6.2E-12 59.1 7.7 73 24-96 2-83 (86)
103 2kzr_A Ubiquitin thioesterase 98.5 8E-08 2.7E-12 60.2 4.5 72 25-97 1-78 (86)
104 1wjn_A Tubulin-folding protein 98.5 1.2E-06 4.1E-11 55.9 8.9 76 22-97 7-93 (97)
105 3shq_A UBLCP1; phosphatase, hy 98.3 1.8E-06 6.2E-11 66.1 7.9 74 22-96 3-79 (320)
106 2dzm_A FAS-associated factor 1 98.3 3.7E-06 1.3E-10 54.6 8.0 73 24-97 9-82 (100)
107 2al3_A TUG long isoform; TUG U 97.9 2.9E-05 1E-09 49.7 6.7 72 25-96 10-81 (90)
108 2pjh_A Protein NPL4, nuclear p 97.9 5.5E-06 1.9E-10 51.6 2.5 70 24-94 4-78 (80)
109 2daj_A KIAA0977 protein, COBL- 97.4 0.0011 3.7E-08 42.2 8.2 66 22-87 8-76 (91)
110 2bps_A YUKD protein; ubiquitin 97.4 0.00039 1.3E-08 43.6 5.7 71 23-93 3-80 (81)
111 2cr5_A Reproduction 8; UBX dom 97.2 0.0043 1.5E-07 40.2 9.4 72 22-94 21-96 (109)
112 3qx1_A FAS-associated factor 1 97.2 0.0052 1.8E-07 37.8 9.2 73 22-95 5-82 (84)
113 4efo_A Serine/threonine-protei 97.1 0.0049 1.7E-07 39.5 8.3 53 23-75 11-64 (94)
114 2dzk_A UBX domain-containing p 97.0 0.0086 2.9E-07 38.9 9.0 75 22-96 11-90 (109)
115 1ryj_A Unknown; beta/alpha pro 96.7 0.016 5.4E-07 34.5 8.3 67 24-100 4-70 (70)
116 1wj4_A KIAA0794 protein; UBX d 96.5 0.052 1.8E-06 36.0 10.3 73 21-94 40-117 (124)
117 3rpf_C Molybdopterin convertin 96.3 0.023 7.9E-07 34.0 7.3 57 39-100 16-74 (74)
118 3jyu_A Ubiquitin carboxyl-term 96.0 0.034 1.2E-06 40.3 8.1 77 24-100 139-224 (231)
119 2kc2_A Talin-1, F1; FERM, adhe 95.8 0.029 9.9E-07 37.8 6.3 71 26-96 13-122 (128)
120 4a3p_A Ubiquitin carboxyl-term 95.8 0.027 9.4E-07 40.4 6.6 78 24-101 127-213 (217)
121 1tyg_B YJBS; alpha beta barrel 95.2 0.04 1.4E-06 34.6 5.2 68 23-100 19-87 (87)
122 1oey_A P67-PHOX, neutrophil cy 95.1 0.081 2.8E-06 33.1 6.2 47 23-71 4-50 (83)
123 1f0z_A THis protein; ubiquitin 94.7 0.082 2.8E-06 30.8 5.2 61 33-100 6-66 (66)
124 2kl0_A Putative thiamin biosyn 94.5 0.039 1.3E-06 33.3 3.6 62 33-102 6-67 (73)
125 1h4r_A Merlin; FERM, neurofibr 94.3 0.5 1.7E-05 34.9 10.0 69 22-91 20-93 (314)
126 2kvr_A Ubiquitin carboxyl-term 94.2 0.053 1.8E-06 36.3 4.1 49 22-70 28-91 (130)
127 1j0g_A Hypothetical protein 18 94.2 0.15 5E-06 32.0 5.8 78 23-100 9-91 (92)
128 3po0_A Small archaeal modifier 94.1 0.34 1.2E-05 29.4 7.4 61 35-100 18-89 (89)
129 2l32_A Small archaeal modifier 94.1 0.16 5.5E-06 30.6 5.8 64 25-100 3-66 (74)
130 2cu3_A Unknown function protei 93.9 0.2 6.8E-06 28.9 5.8 60 33-100 5-64 (64)
131 2k5p_A THis protein, thiamine- 93.8 0.04 1.4E-06 33.7 2.6 63 33-102 6-71 (78)
132 1fm0_D Molybdopterin convertin 93.4 0.2 6.9E-06 29.8 5.3 59 36-100 18-81 (81)
133 1s3s_G P47 protein; AAA ATPase 93.4 0.39 1.3E-05 31.7 7.1 70 23-92 51-124 (127)
134 1vjk_A Molybdopterin convertin 93.3 0.51 1.8E-05 29.3 7.4 61 35-100 27-98 (98)
135 2q5w_D Molybdopterin convertin 93.3 0.17 5.8E-06 29.9 4.8 59 36-100 17-77 (77)
136 1y8x_B Ubiquitin-activating en 93.0 0.1 3.5E-06 33.5 3.6 59 36-94 6-82 (98)
137 2ylm_A Ubiquitin carboxyl-term 92.4 0.25 8.5E-06 39.8 5.9 75 22-96 128-217 (530)
138 1vd2_A Protein kinase C, IOTA 92.0 1.1 3.6E-05 28.2 7.4 48 22-70 4-52 (89)
139 1wgk_A Riken cDNA 2900073H19 p 91.1 1.2 4.2E-05 28.8 7.3 77 24-104 11-112 (114)
140 2g1e_A Hypothetical protein TA 90.8 1.2 4.2E-05 26.7 6.7 61 39-100 19-90 (90)
141 2inc_C TOUB protein; DIIRON, 4 90.5 1.9 6.6E-05 26.8 7.3 60 37-96 15-82 (83)
142 3dwg_C 9.5 kDa culture filtrat 90.2 1 3.5E-05 27.5 6.0 60 39-100 21-93 (93)
143 2hj1_A Hypothetical protein; s 90.1 1.3 4.5E-05 28.0 6.5 70 22-96 10-85 (97)
144 1ef1_A Moesin; membrane, FERM 89.7 2.8 9.6E-05 30.3 9.0 65 24-89 1-71 (294)
145 2qjl_A URM1, ubiquitin-related 89.3 2.2 7.7E-05 26.4 7.2 62 35-100 20-99 (99)
146 2ylm_A Ubiquitin carboxyl-term 89.2 0.49 1.7E-05 38.1 4.9 34 37-70 38-71 (530)
147 1rws_A Hypothetical protein PF 88.8 0.28 9.5E-06 29.4 2.5 52 40-100 26-77 (77)
148 3w1s_C Ubiquitin-like protein 88.4 1.6 5.4E-05 27.4 5.9 61 21-83 5-70 (91)
149 1wz3_A Autophagy 12B, ATG12B, 88.2 0.89 3E-05 28.8 4.7 60 22-83 11-75 (96)
150 3ivf_A Talin-1; FERM domain, c 87.2 3.9 0.00013 30.8 8.6 70 25-95 4-83 (371)
151 4gdk_A Ubiquitin-like protein 86.6 1.2 4.1E-05 27.9 4.5 61 23-83 4-70 (91)
152 1rrb_A RAF-1 RBD, RAF proto-on 86.3 4.5 0.00015 26.3 7.2 43 26-68 20-62 (107)
153 2i1j_A Moesin; FERM, coiled-co 85.9 5.9 0.0002 32.2 9.4 68 23-91 3-76 (575)
154 3ivf_A Talin-1; FERM domain, c 85.9 8.7 0.0003 28.8 9.9 47 23-69 84-131 (371)
155 2kmm_A Guanosine-3',5'-BIS(dip 84.9 3.2 0.00011 23.7 5.7 63 27-98 3-65 (73)
156 2l52_A Methanosarcina acetivor 84.5 2.9 0.0001 25.9 5.7 56 44-100 27-99 (99)
157 1ip9_A BEM1 protein; ubiquitin 84.3 5.6 0.00019 24.8 7.4 48 23-72 11-58 (85)
158 3ge3_C Toluene-4-monooxygenase 83.8 4.8 0.00016 25.0 6.2 60 37-96 17-83 (84)
159 2juo_A GA-binding protein alph 79.8 8.8 0.0003 24.0 6.4 58 40-97 8-65 (89)
160 3qij_A Protein 4.1; cytoskelet 78.4 3.2 0.00011 30.5 4.8 40 23-62 16-55 (296)
161 1wgy_A RAP guanine nucleotide 77.4 8.8 0.0003 24.6 6.1 75 22-96 7-86 (104)
162 1v8c_A MOAD related protein; r 76.8 5 0.00017 27.5 5.1 61 40-102 19-89 (168)
163 2zjd_A Microtubule-associated 75.7 14 0.00047 24.5 6.9 72 23-94 34-118 (130)
164 3u7z_A Putative metal binding 75.3 13 0.00045 23.6 6.9 73 22-96 6-98 (101)
165 2npt_A Dual specificity mitoge 74.5 14 0.00048 23.6 6.5 59 21-94 11-71 (106)
166 1q1o_A Cell division control p 73.8 5.3 0.00018 25.4 4.3 38 24-61 5-49 (98)
167 3rui_B Autophagy-related prote 71.9 12 0.0004 24.4 5.7 61 23-83 29-96 (118)
168 3h9d_A ATG8, microtubule-assoc 71.9 11 0.00037 24.6 5.6 61 23-83 30-97 (119)
169 3hvz_A Uncharacterized protein 68.8 16 0.00055 21.8 6.3 62 26-96 7-68 (78)
170 1eo6_A GATE-16, golgi-associat 67.6 21 0.0007 23.0 6.2 61 23-83 27-94 (117)
171 3au4_A Myosin-X; protein-prote 66.7 22 0.00074 28.2 7.4 48 22-69 214-263 (555)
172 3pvl_A Myosin VIIA isoform 1; 65.9 23 0.00077 29.2 7.5 48 22-69 261-309 (655)
173 2r2q_A Gamma-aminobutyric acid 65.9 22 0.00077 22.5 6.1 61 23-83 26-93 (110)
174 1wxm_A A-RAF proto-oncogene se 65.8 21 0.00073 22.1 8.0 67 26-95 9-79 (86)
175 1f2r_I Inhibitor of caspase-ac 65.4 23 0.0008 22.5 8.1 56 26-83 20-79 (100)
176 1gcq_C VAV proto-oncogene; SH3 64.8 2.5 8.7E-05 24.0 1.2 20 77-96 21-40 (70)
177 3m95_A Autophagy related prote 64.5 15 0.0005 24.2 5.1 61 23-83 35-102 (125)
178 2fpe_A C-JUN-amino-terminal ki 61.7 7.5 0.00026 21.4 2.9 23 78-100 15-37 (62)
179 2lj0_A Sorbin and SH3 domain-c 60.6 7.9 0.00027 22.2 2.9 25 77-101 17-41 (65)
180 2dhz_A RAP guanine nucleotide 60.4 20 0.0007 23.5 5.1 73 22-94 7-90 (120)
181 1zuy_A Myosin-5 isoform; SH3 d 59.7 9 0.00031 20.6 2.9 24 77-100 12-35 (58)
182 1wgr_A Growth factor receptor- 59.3 28 0.00096 22.0 5.5 40 22-61 7-46 (100)
183 2j05_A RAS GTPase-activating p 59.1 8.4 0.00029 21.4 2.8 24 78-101 18-41 (65)
184 1wfy_A Regulator of G-protein 58.7 20 0.00069 23.0 4.8 51 23-73 15-66 (104)
185 1jo8_A ABP1P, actin binding pr 58.2 9.1 0.00031 20.7 2.8 24 78-101 12-35 (58)
186 2ebp_A SAM and SH3 domain-cont 57.5 9.8 0.00034 21.9 3.0 24 78-101 23-46 (73)
187 2nwm_A Vinexin; cell adhesion; 57.3 12 0.00041 21.0 3.3 24 78-101 13-36 (65)
188 2eki_A DRG 1, developmentally- 56.8 11 0.00037 23.7 3.2 55 39-96 29-87 (93)
189 2l05_A Serine/threonine-protei 56.5 35 0.0012 21.5 9.7 66 26-94 19-88 (95)
190 1k4u_S Phagocyte NADPH oxidase 56.4 14 0.00048 20.2 3.4 24 78-101 17-40 (62)
191 1zx6_A YPR154WP; SH3 domain, p 55.9 9.8 0.00034 20.6 2.7 23 78-100 14-36 (58)
192 2bz8_A SH3-domain kinase bindi 55.5 11 0.00037 20.4 2.8 24 78-101 13-36 (58)
193 2g6f_X RHO guanine nucleotide 54.8 12 0.0004 20.3 2.9 24 78-101 16-39 (59)
194 2nvu_B Maltose binding protein 54.3 22 0.00076 29.4 5.6 59 36-94 713-789 (805)
195 1tg0_A BBC1 protein, myosin ta 54.1 12 0.00042 20.9 3.0 23 78-100 19-41 (68)
196 1y0m_A 1-phosphatidylinositol- 53.5 12 0.00041 20.4 2.8 24 78-101 15-38 (61)
197 2fpf_A C-JUN-amino-terminal ki 53.4 10 0.00036 21.4 2.6 24 78-101 18-41 (71)
198 1uti_A GRB2-related adaptor pr 53.4 12 0.00042 20.1 2.8 23 78-100 13-35 (58)
199 1tuc_A Alpha-spectrin; capping 52.9 10 0.00036 21.0 2.5 23 79-101 2-24 (63)
200 1w70_A Neutrophil cytosol fact 52.6 14 0.00046 20.2 2.9 24 78-101 16-39 (60)
201 1uj0_A Signal transducing adap 52.5 13 0.00043 20.5 2.8 24 78-101 17-40 (62)
202 3qwx_X Cell death abnormality 52.1 48 0.0016 21.9 6.5 73 24-101 48-153 (174)
203 1g2b_A Spectrin alpha chain; c 51.8 13 0.00043 20.5 2.7 24 78-101 33-56 (62)
204 2vwf_A Growth factor receptor- 51.8 13 0.00046 19.9 2.8 23 78-100 14-36 (58)
205 2dmo_A Neutrophil cytosol fact 51.5 14 0.00049 20.7 2.9 24 78-101 19-42 (68)
206 2dbk_A CRK-like protein; struc 51.3 15 0.00052 21.8 3.2 24 78-101 30-53 (88)
207 2j6f_A CD2-associated protein; 51.2 15 0.0005 20.2 2.9 23 78-100 13-36 (62)
208 2ew3_A SH3-containing GRB2-lik 51.1 15 0.0005 20.9 2.9 24 78-101 15-38 (68)
209 1ruw_A Myosin-3 isoform, MYO3; 50.9 15 0.0005 20.6 2.9 25 77-101 14-38 (69)
210 1yn8_A NBP2, NAP1-binding prot 50.8 14 0.00049 19.8 2.8 23 78-100 13-35 (59)
211 1ue9_A Intersectin 2; beta bar 50.4 14 0.00049 21.3 2.9 24 78-101 19-42 (80)
212 3u52_E Phenol hydroxylase comp 50.2 51 0.0017 21.6 7.2 69 36-104 39-117 (119)
213 2eyx_A V-CRK sarcoma virus CT1 49.7 11 0.00038 21.2 2.2 23 79-101 21-43 (67)
214 1cka_A C-CRK N-terminal SH3 do 49.7 15 0.0005 19.7 2.7 23 78-100 13-35 (57)
215 2xmf_A Myosin 1E SH3; motor pr 49.3 16 0.00055 19.8 2.9 23 78-100 17-39 (60)
216 2dl4_A Protein STAC; SH3 domai 49.2 17 0.00057 20.4 3.0 24 78-101 19-42 (68)
217 1zlm_A Osteoclast stimulating 49.1 15 0.00052 19.8 2.7 23 78-100 15-37 (58)
218 2gnc_A SLIT-ROBO RHO GTPase-ac 49.1 13 0.00045 20.2 2.5 24 78-101 18-41 (60)
219 1sem_A SEM-5; SRC-homology 3 ( 49.0 15 0.00052 19.6 2.7 23 78-100 14-36 (58)
220 2drm_A Acanthamoeba myosin IB; 48.9 16 0.00053 19.6 2.7 23 78-100 15-37 (58)
221 2dl3_A Sorbin and SH3 domain-c 48.9 15 0.00051 20.5 2.7 24 78-101 19-42 (68)
222 2bzy_A CRK-like protein, CRKL 48.9 14 0.00047 20.7 2.6 23 79-101 16-38 (67)
223 2ke9_A Caskin-2; SH3 domain, A 48.7 13 0.00043 22.1 2.5 24 78-101 31-54 (83)
224 1w1f_A Tyrosine-protein kinase 48.7 16 0.00055 20.1 2.8 22 78-100 19-40 (65)
225 2o9s_A Ponsin; SH3 domain, sig 48.5 17 0.00057 20.2 2.9 24 78-101 18-41 (67)
226 2ct3_A Vinexin; SH3 domian, st 48.2 16 0.00053 20.4 2.7 24 78-101 19-42 (70)
227 2dnf_A Doublecortin domain-con 48.0 32 0.0011 21.7 4.5 69 13-89 5-81 (108)
228 2djq_A SH3 domain containing r 47.8 16 0.00054 20.4 2.7 23 78-100 19-41 (68)
229 4e6r_A Cytoplasmic protein NCK 47.8 18 0.00063 19.2 2.9 23 78-100 13-35 (58)
230 1x6b_A RHO guanine exchange fa 47.7 13 0.00044 21.6 2.4 23 78-101 29-51 (79)
231 2ak5_A RHO guanine nucleotide 47.3 14 0.00049 20.3 2.4 24 78-101 18-41 (64)
232 2oaw_A Spectrin alpha chain, b 47.1 14 0.00049 20.2 2.4 24 78-101 13-36 (65)
233 2cuc_A SH3 domain containing r 47.1 15 0.0005 20.6 2.5 23 78-100 19-41 (70)
234 2fei_A CD2-associated protein; 47.1 9.1 0.00031 21.6 1.6 23 78-100 13-35 (65)
235 2yun_A Nostrin; nitric oxide s 46.5 18 0.00062 20.8 2.9 24 78-101 19-42 (79)
236 2lx7_A GAS-7, growth arrest-sp 46.4 12 0.00041 21.1 2.0 23 79-101 16-39 (60)
237 2lcs_A NAP1-binding protein 2; 46.3 16 0.00053 21.0 2.6 23 78-100 17-39 (73)
238 1x2k_A OSTF1, osteoclast stimu 46.2 20 0.00067 20.0 3.0 23 78-100 19-41 (68)
239 1x2p_A Protein arginine N-meth 46.2 20 0.00068 19.9 3.0 23 78-100 19-41 (68)
240 2dls_A PDZ-rhogef, RHO guanine 46.0 19 0.00066 21.2 3.1 72 25-105 21-93 (93)
241 3c0c_A Endophilin-A2; endocyto 45.9 19 0.00065 20.4 2.9 24 78-101 25-48 (73)
242 2dl8_A SLIT-ROBO RHO GTPase-ac 45.6 15 0.00053 20.8 2.5 24 78-101 21-44 (72)
243 1zps_A PRA-CH, phosphoribosyl- 45.4 11 0.00038 25.4 2.0 78 21-102 20-102 (138)
244 1x2q_A Signal transducing adap 45.1 21 0.00071 21.1 3.1 24 78-101 29-52 (88)
245 2yuo_A CIP85, RUN and TBC1 dom 44.7 16 0.00054 21.0 2.4 24 78-101 19-42 (78)
246 1x69_A Cortactin isoform A; SH 43.8 21 0.00071 20.6 2.9 24 78-101 29-52 (79)
247 2kxd_A 11-MER peptide, SH3 dom 43.7 16 0.00055 20.8 2.3 23 79-101 12-34 (73)
248 2dil_A Proline-serine-threonin 43.5 17 0.00057 20.3 2.4 23 78-100 20-42 (69)
249 2ed0_A ABL interactor 2; coile 43.5 18 0.00061 20.9 2.5 24 78-101 29-52 (78)
250 2eqi_A Phospholipase C, gamma 43.2 13 0.00045 20.8 1.9 24 78-101 19-42 (69)
251 1wie_A RIM binding protein 2; 43.1 30 0.001 20.8 3.6 22 80-101 37-59 (96)
252 2pqh_A Spectrin alpha chain, b 43.0 18 0.0006 21.0 2.5 24 78-101 14-37 (80)
253 1gl5_A Tyrosine-protein kinase 42.5 18 0.00063 20.1 2.4 23 78-100 14-36 (67)
254 2ekh_A SH3 and PX domain-conta 42.4 18 0.00063 21.0 2.5 23 78-100 20-42 (80)
255 1b07_A Protein (proto-oncogene 42.4 21 0.00073 19.9 2.7 23 78-100 15-37 (65)
256 2ecz_A Sorbin and SH3 domain-c 42.1 13 0.00044 20.9 1.7 24 78-101 19-42 (70)
257 2ega_A SH3 and PX domain-conta 42.0 16 0.00053 20.5 2.1 23 78-100 20-42 (70)
258 2ed1_A 130 kDa phosphatidylino 42.0 14 0.00048 21.2 1.9 23 78-100 22-44 (76)
259 1k1z_A VAV; SH3, proto-oncogen 42.0 23 0.00078 20.3 2.9 23 79-101 31-54 (78)
260 2dnu_A RUH-061, SH3 multiple d 41.9 16 0.00056 20.4 2.2 25 77-101 19-43 (71)
261 1wmh_B Partitioning defective- 41.7 60 0.002 20.0 6.0 45 23-69 5-52 (86)
262 3u23_A CD2-associated protein; 41.7 23 0.00079 19.2 2.8 23 78-100 19-41 (65)
263 2a28_A BZZ1 protein; SH3 domai 41.2 25 0.00086 18.5 2.8 21 78-98 12-32 (54)
264 1pqs_A Cell division control p 41.2 14 0.00049 22.2 1.8 39 36-74 3-49 (77)
265 2bkf_A Zinc-finger protein NBR 41.0 62 0.0021 20.0 6.5 44 23-69 5-50 (87)
266 2i0n_A Class VII unconventiona 40.9 17 0.00058 21.1 2.2 23 78-100 22-44 (80)
267 2l0a_A STAM-1, signal transduc 40.9 23 0.00079 20.4 2.8 24 78-101 29-52 (72)
268 3ulr_B SRC substrate cortactin 40.8 25 0.00084 19.2 2.8 23 78-100 21-43 (65)
269 2ydl_A SH3 domain-containing k 40.5 23 0.0008 20.0 2.7 20 78-97 14-33 (69)
270 3cqt_A P59-FYN, proto-oncogene 40.5 23 0.0008 20.6 2.8 24 78-101 17-40 (79)
271 4esr_A Jouberin; AHI-1, AHI1, 40.4 27 0.00093 19.3 3.0 23 78-100 18-40 (69)
272 2yup_A Vinexin; sorbin and SH3 40.3 16 0.00054 21.7 2.0 24 78-101 29-52 (90)
273 1oot_A Hypothetical 40.4 kDa p 40.0 26 0.00088 18.9 2.7 20 78-97 15-34 (60)
274 2v1q_A SLA1, cytoskeleton asse 39.9 25 0.00086 18.8 2.7 19 78-96 14-32 (60)
275 2jt4_A Cytoskeleton assembly c 39.6 20 0.0007 20.0 2.3 20 78-97 18-37 (71)
276 2gqi_A RAS GTPase-activating p 39.6 10 0.00036 21.5 1.0 24 78-101 20-43 (71)
277 4f14_A Nebulette; SH3 domain, 39.6 29 0.00099 18.7 3.0 23 78-100 18-40 (64)
278 1spk_A RSGI RUH-010, riken cDN 39.1 16 0.00056 20.5 1.9 23 78-100 20-43 (72)
279 2jmc_A Spectrin alpha chain, b 39.1 18 0.0006 20.9 2.0 24 78-101 3-26 (77)
280 1neg_A Spectrin alpha chain, b 38.9 21 0.00073 21.2 2.4 24 78-101 29-52 (83)
281 3pvl_A Myosin VIIA isoform 1; 38.8 45 0.0015 27.4 5.0 69 27-96 538-606 (655)
282 2oyn_A Hypothetical protein MJ 38.8 14 0.00047 25.1 1.7 18 82-99 119-136 (146)
283 2dl7_A KIAA0769 protein; SH3 d 38.8 34 0.0011 19.3 3.2 19 78-96 20-38 (73)
284 3h0h_A Proto-oncogene tyrosine 38.4 26 0.00091 19.6 2.7 23 78-100 27-49 (73)
285 1wi7_A SH3-domain kinase bindi 38.3 11 0.00038 21.0 1.0 24 78-101 19-42 (68)
286 3qwy_A Cell death abnormality 38.3 1.1E+02 0.0038 22.1 7.5 74 24-101 77-182 (308)
287 1aww_A ATK, AMGX1, BPK, bruton 38.1 14 0.00048 20.5 1.4 23 78-100 20-42 (67)
288 1v1c_A Obscurin; muscle, sarco 37.8 32 0.0011 20.5 3.0 24 77-100 18-41 (71)
289 2kgt_A Tyrosine-protein kinase 37.8 21 0.00073 20.0 2.2 23 78-101 22-44 (72)
290 1csk_A C-SRC SH3 domain; phosp 37.7 28 0.00095 19.5 2.7 18 78-95 23-40 (71)
291 1ri9_A FYN-binding protein; SH 37.7 9.6 0.00033 24.4 0.7 23 77-99 52-74 (102)
292 3ngp_A Spectrin alpha chain, b 37.7 30 0.001 18.6 2.8 24 77-100 17-40 (62)
293 2d8j_A FYN-related kinase; SH3 37.3 21 0.00072 20.3 2.2 23 78-100 19-41 (77)
294 2cub_A Cytoplasmic protein NCK 37.1 25 0.00084 20.8 2.5 24 78-101 29-52 (88)
295 2epd_A RHO GTPase-activating p 36.9 17 0.00058 20.9 1.7 24 78-101 22-45 (76)
296 2l66_A SSO7C4, transcriptional 36.7 20 0.00069 19.5 1.9 27 70-96 11-37 (53)
297 3thk_A Spectrin alpha chain, b 36.5 30 0.001 19.3 2.8 33 64-100 7-39 (73)
298 4gmv_A RAS-associated and plec 36.4 1.1E+02 0.0039 22.4 6.5 43 19-61 26-68 (281)
299 2x3w_D Syndapin I, protein kin 36.4 23 0.00078 19.0 2.1 21 78-98 15-35 (60)
300 1i07_A Epidermal growth factor 36.4 21 0.00071 19.3 2.0 19 78-96 13-31 (60)
301 2cre_A HEF-like protein; SH3 d 36.3 24 0.00082 19.6 2.3 20 78-97 19-38 (71)
302 2k9i_A Plasmid PRN1, complete 36.2 31 0.0011 18.2 2.7 29 36-64 9-37 (55)
303 1x6g_A Megakaryocyte-associate 36.2 26 0.00089 20.4 2.5 22 78-99 29-50 (81)
304 2k2m_A EPS8-like protein 1; al 36.1 30 0.001 19.2 2.7 20 78-97 20-39 (68)
305 2oi3_A Tyrosine-protein kinase 36.0 30 0.001 20.1 2.7 20 78-97 37-56 (86)
306 2ysq_A RHO guanine nucleotide 35.9 29 0.00098 20.0 2.6 24 78-101 22-45 (81)
307 2kxc_A Brain-specific angiogen 35.9 18 0.00062 20.0 1.7 23 78-100 19-42 (67)
308 4glm_A Dynamin-binding protein 35.7 35 0.0012 18.9 3.0 24 78-101 25-48 (72)
309 2dbm_A SH3-containing GRB2-lik 35.3 18 0.00062 20.5 1.6 23 78-100 19-41 (73)
310 2dm1_A Protein VAV-2; RHO fami 35.3 20 0.00069 20.3 1.8 22 78-99 19-40 (73)
311 2b86_A Cytoplasmic protein NCK 35.1 39 0.0013 19.0 3.1 20 78-97 16-35 (67)
312 1s1n_A Nephrocystin 1; beta ba 35.0 16 0.00055 20.3 1.3 23 78-100 22-44 (68)
313 2al6_A Focal adhesion kinase 1 34.7 38 0.0013 25.5 3.8 56 27-82 10-76 (375)
314 1wyx_A CRK-associated substrat 34.6 30 0.001 19.2 2.5 20 78-97 15-34 (69)
315 1u5s_A Cytoplasmic protein NCK 34.5 29 0.00099 19.3 2.4 19 78-96 18-36 (71)
316 1ujy_A RHO guanine nucleotide 34.5 18 0.0006 20.7 1.5 24 78-101 22-45 (76)
317 2da9_A SH3-domain kinase bindi 34.3 28 0.00094 19.4 2.3 20 78-97 19-38 (70)
318 2jw4_A Cytoplasmic protein NCK 34.3 46 0.0016 18.7 3.3 19 78-96 19-37 (72)
319 4dxe_H ACP, acyl carrier prote 33.8 52 0.0018 20.1 3.7 43 36-87 17-60 (101)
320 1zuu_A BZZ1 protein; SH3 domai 33.5 28 0.00097 18.5 2.2 21 78-98 13-33 (58)
321 2cu1_A Mitogen-activated prote 33.2 65 0.0022 20.6 4.1 38 23-61 7-44 (103)
322 1c1y_B Proto-onkogene serine/t 33.2 81 0.0028 19.0 8.7 43 26-68 3-45 (77)
323 1wx6_A Cytoplasmic protein NCK 33.0 34 0.0012 20.1 2.7 19 78-96 29-47 (91)
324 3qa8_A MGC80376 protein; kinas 33.0 60 0.002 26.8 4.9 49 35-83 322-371 (676)
325 3o27_A Putative uncharacterize 32.9 26 0.0009 20.8 2.0 25 76-100 30-54 (68)
326 3eg3_A Proto-oncogene tyrosine 32.6 56 0.0019 17.4 3.4 21 78-98 17-37 (63)
327 1yfb_A Transition state regula 32.5 16 0.00055 20.8 1.0 27 70-96 21-47 (59)
328 2iim_A Proto-oncogene tyrosine 32.4 41 0.0014 18.2 2.8 19 78-96 18-36 (62)
329 1uhf_A Intersectin 2; beta bar 32.3 31 0.0011 19.3 2.3 19 78-96 20-38 (69)
330 1uhc_A KIAA1010 protein; beta 32.2 32 0.0011 19.7 2.4 21 78-98 25-45 (79)
331 2dlp_A KIAA1783 protein; SH3 d 32.2 24 0.00083 20.6 1.9 19 78-96 20-38 (85)
332 2jte_A CD2-associated protein; 32.1 38 0.0013 18.4 2.7 20 78-97 18-37 (64)
333 1k3e_A CEST; chaperone, secret 32.0 55 0.0019 22.3 3.9 29 44-72 2-36 (156)
334 1wxb_A Epidermal growth factor 31.9 40 0.0014 18.7 2.7 19 78-96 19-37 (68)
335 2k9g_A SH3 domain-containing k 31.9 39 0.0013 18.9 2.7 20 78-97 21-40 (73)
336 2o2o_A SH3-domain kinase-bindi 31.8 22 0.00076 21.5 1.7 25 78-102 30-54 (92)
337 2yt6_A Adult MALE urinary blad 31.5 45 0.0015 20.2 3.1 24 78-101 39-62 (109)
338 2pkt_A PDZ and LIM domain prot 31.3 47 0.0016 19.1 3.1 54 38-99 31-86 (91)
339 1uff_A Intersectin 2; beta bar 31.2 24 0.00081 21.1 1.7 20 78-97 17-36 (93)
340 1wxt_A Hypothetical protein FL 31.1 43 0.0015 18.5 2.8 19 78-96 19-37 (68)
341 3cta_A Riboflavin kinase; stru 31.0 26 0.00089 24.2 2.1 26 76-101 201-226 (230)
342 2djt_A Unnamed protein product 31.0 22 0.00074 21.3 1.5 51 54-105 50-104 (104)
343 1j3t_A Intersectin 2; beta bar 30.5 47 0.0016 18.7 2.9 20 78-97 22-41 (74)
344 2egc_A SH3 and PX domain-conta 30.4 30 0.001 19.7 2.1 21 80-100 23-43 (75)
345 3i5r_A Phosphatidylinositol 3- 30.0 35 0.0012 19.7 2.3 18 78-95 17-34 (83)
346 1bb9_A Amphiphysin 2; transfer 29.7 31 0.0011 21.7 2.2 18 78-95 56-73 (115)
347 2yuq_A Tyrosine-protein kinase 29.4 38 0.0013 19.7 2.4 23 78-100 31-53 (85)
348 2ct4_A CDC42-interacting prote 29.3 46 0.0016 18.4 2.7 20 78-97 19-38 (70)
349 3o5z_A Phosphatidylinositol 3- 29.3 36 0.0012 20.2 2.3 28 64-95 13-40 (90)
350 2cud_A SRC-like-adapter; SH3 d 29.0 40 0.0014 19.4 2.4 19 78-96 29-47 (79)
351 1nm7_A Peroxisomal membrane pr 28.9 42 0.0014 19.2 2.5 21 78-98 19-40 (69)
352 1wj6_A KIAA0049 protein, RSGI 28.6 1.1E+02 0.0039 19.3 7.7 59 18-77 8-69 (101)
353 2rf0_A Mitogen-activated prote 28.6 46 0.0016 19.9 2.7 20 78-97 41-60 (89)
354 4ag1_C Fynomer; hydrolase-de n 28.6 42 0.0014 19.6 2.5 23 78-100 18-40 (84)
355 2jxb_A T-cell surface glycopro 28.4 48 0.0016 19.4 2.8 19 78-96 43-61 (86)
356 2e5k_A Suppressor of T-cell re 27.9 30 0.001 20.6 1.8 20 78-97 28-47 (94)
357 1udl_A Intersectin 2, KIAA1256 27.8 41 0.0014 20.1 2.4 23 78-100 46-68 (98)
358 3abf_A 4-oxalocrotonate tautom 27.8 75 0.0026 16.9 3.6 25 46-70 20-44 (64)
359 2dl5_A KIAA0769 protein; SH3 d 27.6 42 0.0014 19.2 2.3 20 78-97 25-44 (78)
360 2eeh_A PDZ domain-containing p 27.4 58 0.002 19.2 3.1 59 38-105 40-100 (100)
361 2k9x_A Tburm1, uncharacterized 27.3 45 0.0016 21.1 2.6 55 45-100 35-102 (110)
362 1x43_A Endophilin B1, SH3 doma 26.9 48 0.0016 19.0 2.6 20 78-97 29-48 (81)
363 2d8h_A SH3YL1 protein; SH3 dom 26.9 31 0.0011 19.8 1.7 21 78-98 29-49 (80)
364 2enm_A Sorting nexin-9; SH3-li 26.4 53 0.0018 18.5 2.7 19 79-97 23-41 (77)
365 2i4s_A General secretion pathw 26.3 68 0.0023 19.2 3.3 69 24-97 24-94 (105)
366 4a6q_A Histone deacetylase com 25.9 52 0.0018 22.2 2.8 63 36-98 55-140 (143)
367 1z9q_A Neutrophil cytosol fact 25.8 20 0.00068 21.2 0.6 24 78-101 30-53 (79)
368 3rnj_A Brain-specific angiogen 25.8 54 0.0019 17.9 2.6 18 79-96 21-38 (67)
369 3hwu_A Putative DNA-binding pr 25.5 1.3E+02 0.0046 19.5 4.9 30 34-63 12-41 (147)
370 1wha_A KIAA0147 protein, scrib 25.2 48 0.0016 19.8 2.4 51 55-105 51-105 (105)
371 3m20_A 4-oxalocrotonate tautom 25.0 74 0.0025 17.3 3.0 25 46-70 18-42 (62)
372 3ny5_A Serine/threonine-protei 24.9 1.3E+02 0.0046 18.8 8.5 44 26-69 15-58 (96)
373 2kym_A BUD emergence protein 1 24.5 61 0.0021 20.4 2.9 23 78-100 15-37 (120)
374 2v1r_A Peroxisomal membrane pr 24.5 53 0.0018 18.6 2.4 21 78-98 26-47 (80)
375 2m0y_A Dedicator of cytokinesi 24.4 47 0.0016 18.5 2.2 20 78-97 23-42 (74)
376 4a9a_A Ribosome-interacting GT 24.4 37 0.0013 25.9 2.1 17 80-96 360-376 (376)
377 2cpg_A REPA protein, transcrip 24.3 56 0.0019 16.4 2.2 26 38-63 4-29 (45)
378 2ki8_A Tungsten formylmethanof 24.1 21 0.00073 23.4 0.6 19 77-95 59-77 (146)
379 2j58_A WZA, outer membrane lip 23.9 2.3E+02 0.0078 21.2 6.4 66 27-95 153-231 (359)
380 1gbq_A GRB2; complex (signal t 23.3 34 0.0012 19.4 1.3 20 78-97 21-40 (74)
381 2w4f_A Protein LAP4; structura 23.2 85 0.0029 18.1 3.2 54 38-99 38-93 (97)
382 2vkn_A Protein SSU81; membrane 23.2 45 0.0015 18.5 1.8 17 80-96 21-37 (70)
383 1tt5_B Ubiquitin-activating en 23.1 22 0.00075 27.7 0.6 57 38-94 344-418 (434)
384 2hc5_A ORF 99, hypothetical pr 22.9 99 0.0034 19.8 3.7 38 22-60 66-103 (117)
385 2gmq_A Hypothetical protein EF 22.9 68 0.0023 20.5 2.8 54 23-76 21-75 (118)
386 3onh_A Ubiquitin-activating en 22.7 1.4E+02 0.0048 19.6 4.4 57 38-94 9-77 (127)
387 1msp_A MSP, major sperm protei 22.3 1.2E+02 0.004 19.3 3.9 26 21-46 25-50 (126)
388 4h87_A Kanadaptin; FHA domain 22.2 90 0.0031 19.9 3.4 21 70-93 99-119 (130)
389 2wlb_A ETP1-FD, electron trans 22.1 1.3E+02 0.0046 17.8 5.0 30 24-53 3-32 (103)
390 2de0_X Alpha-(1,6)-fucosyltran 22.1 78 0.0027 25.3 3.6 26 77-102 453-478 (526)
391 2csi_A RIM-BP2, RIM binding pr 22.0 63 0.0022 18.3 2.4 19 80-98 28-46 (76)
392 2opa_A Probable tautomerase YW 21.9 98 0.0034 16.2 3.3 24 47-70 20-43 (61)
393 3gqs_A Adenylate cyclase-like 21.8 48 0.0016 20.2 1.9 19 70-93 74-92 (106)
394 2rqr_A CED-12 homolog, engulfm 21.7 64 0.0022 20.3 2.6 20 78-97 71-90 (119)
395 2ns5_A Partitioning-defective 21.6 1.5E+02 0.005 18.1 5.3 60 36-96 13-82 (85)
396 4eku_A Protein-tyrosine kinase 21.4 1.7E+02 0.0059 22.2 5.4 52 32-83 35-97 (392)
397 1otf_A 4-oxalocrotonate tautom 21.4 1E+02 0.0034 16.2 3.2 23 47-69 20-42 (62)
398 3axj_B TRAX, translin associat 21.4 51 0.0017 24.5 2.3 19 41-59 24-42 (298)
399 1hsq_A Phospholipase C-gamma ( 21.0 22 0.00075 20.0 0.1 23 78-100 18-40 (71)
400 3reb_B Tyrosine-protein kinase 20.8 78 0.0027 18.4 2.7 20 77-96 14-33 (90)
401 2i6v_A General secretion pathw 20.8 1.3E+02 0.0044 17.2 5.5 69 24-97 6-76 (87)
402 2uzc_A Human pdlim5, PDZ and L 20.8 75 0.0026 18.0 2.6 45 55-99 40-86 (88)
403 1m1s_A WR4; structural genomic 20.7 1.2E+02 0.0041 19.4 3.7 25 22-46 24-48 (116)
404 2eel_A Cell death activator CI 20.7 81 0.0028 19.5 2.8 51 26-78 11-63 (91)
405 3po8_A RV0020C protein, putati 20.6 67 0.0023 19.2 2.4 18 70-93 70-87 (100)
406 2kbt_A Chimera of proto-oncoge 20.6 72 0.0025 20.7 2.7 24 78-101 17-41 (142)
407 1ng2_A Neutrophil cytosolic fa 20.6 85 0.0029 21.1 3.1 25 77-101 22-46 (193)
408 3ebr_A Uncharacterized RMLC-li 20.4 1.6E+02 0.0055 19.4 4.5 22 44-65 133-154 (159)
409 2he4_A Na(+)/H(+) exchange reg 20.4 99 0.0034 17.6 3.1 55 37-99 31-87 (90)
410 2jqj_A DNA damage response pro 20.2 48 0.0016 21.7 1.7 20 70-93 92-111 (151)
411 1jqq_A PEX13P, peroxisomal mem 20.1 61 0.0021 19.0 2.1 21 78-98 26-47 (92)
412 3lxf_A Ferredoxin; iron, iron- 20.0 1.4E+02 0.005 18.0 3.9 27 26-52 2-28 (104)
No 1
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=7.6e-31 Score=173.92 Aligned_cols=84 Identities=51% Similarity=0.843 Sum_probs=80.5
Q ss_pred CCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccC
Q 034043 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 20 ~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~G 99 (105)
++++.|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+|
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034043 100 GALG 103 (105)
Q Consensus 100 G~~~ 103 (105)
|+.+
T Consensus 100 G~~~ 103 (104)
T 1wz0_A 100 GPSS 103 (104)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9764
No 2
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=5.6e-31 Score=177.49 Aligned_cols=81 Identities=46% Similarity=0.792 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeecc
Q 034043 19 VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 19 ~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~ 98 (105)
+.+++.|+|+|++++|++++|+|++++||++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 35 k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 35 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 034043 99 G 99 (105)
Q Consensus 99 G 99 (105)
|
T Consensus 115 G 115 (115)
T 3kyd_D 115 G 115 (115)
T ss_dssp C
T ss_pred C
Confidence 8
No 3
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.96 E-value=1.1e-29 Score=164.71 Aligned_cols=81 Identities=54% Similarity=0.892 Sum_probs=78.3
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
++.|+|+|++++|+++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+||+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 034043 102 L 102 (105)
Q Consensus 102 ~ 102 (105)
.
T Consensus 83 ~ 83 (91)
T 2io0_B 83 Y 83 (91)
T ss_dssp C
T ss_pred c
Confidence 5
No 4
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.96 E-value=1.3e-29 Score=168.57 Aligned_cols=81 Identities=48% Similarity=0.873 Sum_probs=75.6
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeecc
Q 034043 19 VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 19 ~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~ 98 (105)
.++++.|+|+|++ +|+++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 3567899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 034043 99 GG 100 (105)
Q Consensus 99 GG 100 (105)
||
T Consensus 105 GG 106 (106)
T 2eke_C 105 GG 106 (106)
T ss_dssp --
T ss_pred cC
Confidence 98
No 5
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.96 E-value=6e-30 Score=171.22 Aligned_cols=86 Identities=49% Similarity=0.815 Sum_probs=81.2
Q ss_pred CCCCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEe
Q 034043 16 KKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 16 ~~p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~ 95 (105)
++++++++.|+|+|++++|+++.|+|+++++|++||++||++.+++++++||+|||++|.+++||++|+|||||+|+|++
T Consensus 18 ~~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 18 GTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp CCCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred CCCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 33556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 034043 96 HQTGGA 101 (105)
Q Consensus 96 ~q~GG~ 101 (105)
+|+||-
T Consensus 98 ~q~Gg~ 103 (110)
T 2k8h_A 98 EQTGGL 103 (110)
T ss_dssp CCCCC-
T ss_pred cccCcc
Confidence 999984
No 6
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.96 E-value=1.6e-29 Score=164.14 Aligned_cols=80 Identities=55% Similarity=0.905 Sum_probs=74.9
Q ss_pred CCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+++.|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+++|+||
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-30 Score=186.58 Aligned_cols=93 Identities=42% Similarity=0.760 Sum_probs=78.1
Q ss_pred CCCCCCCCCC-CCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCC
Q 034043 10 GGQEEDKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDG 88 (105)
Q Consensus 10 ~~~~~~~~p~-~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medg 88 (105)
+++++++||. +.++.|+|+|+ +++.+++|+|++++||++||++||++.|+++++++|+|||++|.+++||++|+||||
T Consensus 42 ~~~~~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDG 120 (207)
T 3tix_A 42 QEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDN 120 (207)
T ss_dssp -------------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTT
T ss_pred CCCCCCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCC
Confidence 4456678888 46789999997 589999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeccCCCCC
Q 034043 89 DEIDAMLHQTGGALG 103 (105)
Q Consensus 89 D~Idv~~~q~GG~~~ 103 (105)
|+|||+++|+||+.+
T Consensus 121 DtIDV~leQ~GG~~~ 135 (207)
T 3tix_A 121 DIIEAHREQIGGLPS 135 (207)
T ss_dssp EEEEECCCCCTTGGG
T ss_pred CEEEEEEeccCCCcc
Confidence 999999999999763
No 8
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.96 E-value=3.7e-29 Score=162.89 Aligned_cols=82 Identities=54% Similarity=0.868 Sum_probs=78.5
Q ss_pred CCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+++.|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+||
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 034043 101 AL 102 (105)
Q Consensus 101 ~~ 102 (105)
++
T Consensus 84 ~~ 85 (94)
T 2io1_B 84 VP 85 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 9
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=155.82 Aligned_cols=74 Identities=22% Similarity=0.326 Sum_probs=70.7
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
++.|+|+|++ ++.+++|+|+++++|++||++||++.|++++++||+|||.+|.+++||++|+|||||+|||+.-
T Consensus 19 ~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 19 PRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 5679999995 7899999999999999999999999999999999999999999999999999999999999863
No 10
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-27 Score=174.16 Aligned_cols=89 Identities=45% Similarity=0.810 Sum_probs=78.1
Q ss_pred CCCCCCC-CCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEE
Q 034043 13 EEDKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEI 91 (105)
Q Consensus 13 ~~~~~p~-~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~I 91 (105)
++++||. +.++.|+|+|+ ++|.+++|+|++++||++||++||++.|++++++||+|||++|.+++||++|+|||||+|
T Consensus 17 ~~~~kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~I 95 (200)
T 3pge_A 17 KPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 95 (200)
T ss_dssp --------CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred ccccCCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 4577787 46789999997 489999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCC
Q 034043 92 DAMLHQTGGAL 102 (105)
Q Consensus 92 dv~~~q~GG~~ 102 (105)
+|+++|+||..
T Consensus 96 dv~~~q~gg~k 106 (200)
T 3pge_A 96 EAHREQIGGGG 106 (200)
T ss_dssp EEEECCSCCC-
T ss_pred EEEeccCcCcC
Confidence 99999999975
No 11
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=156.58 Aligned_cols=75 Identities=31% Similarity=0.622 Sum_probs=71.7
Q ss_pred CCCCcEEEEEEecCCC-EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEE
Q 034043 20 DQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 20 ~~~~~I~I~v~~~~g~-~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
++++.|+|+|++++++ +++|+|++++||++||++||++.++++++++|+|||++|.+++||++|+|||||+|||+
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3467999999999995 89999999999999999999999999999999999999999999999999999999997
No 12
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.94 E-value=7.6e-29 Score=181.81 Aligned_cols=86 Identities=47% Similarity=0.832 Sum_probs=2.2
Q ss_pred CCCC-CCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEE
Q 034043 16 KKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 16 ~~p~-~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
.||+ ++++.|+|+| +++|++++|+|++++||++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+
T Consensus 12 ~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~ 90 (227)
T 3v7o_A 12 VKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEE
Confidence 3444 5678999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 034043 95 LHQTGGAL 102 (105)
Q Consensus 95 ~~q~GG~~ 102 (105)
++|+||++
T Consensus 91 leQ~GG~~ 98 (227)
T 3v7o_A 91 REQIGGLT 98 (227)
T ss_dssp -----CCC
T ss_pred ecccCCch
Confidence 99999975
No 13
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.94 E-value=1.2e-26 Score=146.41 Aligned_cols=73 Identities=29% Similarity=0.584 Sum_probs=71.1
Q ss_pred CCcEEEEEEecCCC-EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEE
Q 034043 22 SAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 22 ~~~I~I~v~~~~g~-~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
++.|+|+|++++|+ +++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67899999999996 89999999999999999999999999999999999999999999999999999999997
No 14
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.94 E-value=1.6e-26 Score=143.28 Aligned_cols=72 Identities=56% Similarity=0.909 Sum_probs=69.9
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEe
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~ 95 (105)
.|+|+|++++|++++|+|+++++|++||++||++.|+++++++|+|||++|.+++||++|+|||||+|+|++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999984
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.92 E-value=6e-25 Score=160.25 Aligned_cols=87 Identities=46% Similarity=0.837 Sum_probs=78.6
Q ss_pred CCCCC-CCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEE
Q 034043 15 DKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 15 ~~~p~-~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv 93 (105)
+.||. .+++.|+|+|++ ++++++|+|+++++|++||++||++.|++.+++||+|||++|.+++||++|.|||+|+|+|
T Consensus 11 ~~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~ 89 (209)
T 3uf8_A 11 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 89 (209)
T ss_dssp -------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred cccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchh
Confidence 34445 478899999998 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 034043 94 MLHQTGGAL 102 (105)
Q Consensus 94 ~~~q~GG~~ 102 (105)
+++|+||+.
T Consensus 90 ~~eq~Gg~t 98 (209)
T 3uf8_A 90 HREQIGGST 98 (209)
T ss_dssp ECSCTTCCC
T ss_pred hcccccccc
Confidence 999999975
No 16
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.90 E-value=1.5e-25 Score=174.72 Aligned_cols=89 Identities=44% Similarity=0.791 Sum_probs=0.0
Q ss_pred CCCCCCCC-CCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEE
Q 034043 13 EEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEI 91 (105)
Q Consensus 13 ~~~~~p~~-~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~I 91 (105)
+++.+|.. +++.|+|+|++ ++.+++|+|++++||++||++||++.|++.++++|+|||++|.+++||++|+|||||+|
T Consensus 18 ~~~~~~~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i 96 (389)
T 4da1_A 18 KPEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDII 96 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEe
Confidence 34455553 56899999998 77889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCC
Q 034043 92 DAMLHQTGGAL 102 (105)
Q Consensus 92 dv~~~q~GG~~ 102 (105)
+|+++|+||..
T Consensus 97 ~~~~~q~gg~n 107 (389)
T 4da1_A 97 EAHREQIGGEN 107 (389)
T ss_dssp -----------
T ss_pred eeeeccccccc
Confidence 99999999975
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.90 E-value=1.7e-25 Score=174.64 Aligned_cols=88 Identities=47% Similarity=0.803 Sum_probs=1.0
Q ss_pred CCCCCCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEE
Q 034043 14 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 14 ~~~~p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv 93 (105)
++++-..+++.|+|+|++ ++++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||
T Consensus 11 ~~~~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv 89 (360)
T 3ix6_A 11 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 89 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhh
Confidence 444434467899999998 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 034043 94 MLHQTGGAL 102 (105)
Q Consensus 94 ~~~q~GG~~ 102 (105)
+++|+||..
T Consensus 90 ~~~Q~g~~~ 98 (360)
T 3ix6_A 90 HREQIGGMR 98 (360)
T ss_dssp -------CH
T ss_pred hhccCchHH
Confidence 999999963
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.86 E-value=2e-21 Score=122.56 Aligned_cols=74 Identities=22% Similarity=0.452 Sum_probs=69.4
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcc-cEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~-~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
..|++-+++.....+.|+|++++++.+||.+||++.+++++ .++|.|||.||.+++||++|+|+|||.|||++.
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC-
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeeeC
Confidence 47899999887777999999999999999999999999999 999999999999999999999999999999873
No 19
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.85 E-value=3.8e-21 Score=124.66 Aligned_cols=96 Identities=43% Similarity=0.719 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCC
Q 034043 1 MSATGGGGGGGQEEDKK-PVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQT 79 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~T 79 (105)
||+.+. . ++.+++ +.+++..|+|+|++.+|+.+.|.|.+++++..|+++|+++.|+++++++|+|+|++|.++.|
T Consensus 1 ~~~~~~-~---~~~~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~t 76 (97)
T 1wyw_B 1 MSDQEA-K---PSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76 (97)
T ss_dssp ----------------------CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCC
T ss_pred CCcccc-C---ccccccCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCC
Confidence 777653 2 223333 33566799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEeeccCC
Q 034043 80 PDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 80 p~dl~medgD~Idv~~~q~GG 100 (105)
+++++|++||+|+++++++||
T Consensus 77 l~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 77 PKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp HHHHTCCTTCEEEEEESSSCC
T ss_pred HHHCCCCCCCEEEEEEecCCC
Confidence 999999999999999999998
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.83 E-value=4.4e-20 Score=114.44 Aligned_cols=78 Identities=50% Similarity=0.859 Sum_probs=74.9
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+.|+|+|++.+|+.+.++|.+++++..|+++|+++.|+++++++|+|+|+.|.++.|+++++|++||+|++++++.||
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.2e-16 Score=100.28 Aligned_cols=90 Identities=14% Similarity=0.322 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCE
Q 034043 11 GQEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDE 90 (105)
Q Consensus 11 ~~~~~~~p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~ 90 (105)
......+|...+..|+|+|+..+|+.+.+.|.+++++..|+..++++.+++++.++|+|+|+.|.++.|..++++++|++
T Consensus 9 ~~~~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~ 88 (98)
T 4hcn_B 9 HHSSGENLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 88 (98)
T ss_dssp -------------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEE
T ss_pred CCCCCCCCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCE
Confidence 33344555666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCC
Q 034043 91 IDAMLHQTGG 100 (105)
Q Consensus 91 Idv~~~q~GG 100 (105)
|.++++++||
T Consensus 89 i~l~~rl~GG 98 (98)
T 4hcn_B 89 LHLVLRLRGG 98 (98)
T ss_dssp EEEECBCSCC
T ss_pred EEEEEecCCC
Confidence 9999999998
No 22
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.65 E-value=1.7e-15 Score=94.90 Aligned_cols=82 Identities=17% Similarity=0.416 Sum_probs=78.0
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeecc
Q 034043 19 VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 19 ~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~ 98 (105)
..+...|.|+|+..+|+.+.+.|.+++++..|+..++++.+++++.++|+|+|+.|.++.|..++++++|++|.+++++.
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 034043 99 GG 100 (105)
Q Consensus 99 GG 100 (105)
||
T Consensus 87 GG 88 (88)
T 3dbh_I 87 GG 88 (88)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.1e-15 Score=95.06 Aligned_cols=81 Identities=17% Similarity=0.405 Sum_probs=72.2
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
..|.|+|+..+++.+.+.|.+++++..|++.++++.+++++.++|+|+|+.|.++.|.++++++++++|.+++++.||..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG 81 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 36889999988999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 034043 103 G 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 82 ~ 82 (85)
T 3n3k_B 82 G 82 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=2.3e-15 Score=93.47 Aligned_cols=81 Identities=17% Similarity=0.382 Sum_probs=75.0
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
..|.|+|+..++..+.+.+.+++++..|++.++++.+++++.++|+|+|+.|.++.|..+++++++++|.+++++.||..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~g 81 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGG 81 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC--
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 034043 103 G 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 82 g 82 (85)
T 3mtn_B 82 G 82 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.59 E-value=1.6e-14 Score=87.66 Aligned_cols=76 Identities=17% Similarity=0.423 Sum_probs=71.0
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
++|+|+..+|+.+.+.+.+++++..|++.++++.+++++.++|+|+|+.|.++.|.+++++++|++|.++.++.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4688888889989999999999999999999999999999999999999999999999999999999999999998
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.58 E-value=2.1e-14 Score=87.07 Aligned_cols=76 Identities=16% Similarity=0.391 Sum_probs=72.6
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
++|+|+..+|+.+.+.+.+++++..|++.+++..+++++.++++|+|+.|.++.|.+++++.+|++|.+++++.||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4688888888888999999999999999999999999999999999999999999999999999999999999998
No 27
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.58 E-value=3.6e-14 Score=87.54 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=74.2
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~G 99 (105)
..|.|+|+..+|+.+.+.|.+++++..|+..++++.|++++.++++|.|+.|.++.|.+++++++|++|.+++++.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999887
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=2e-14 Score=90.06 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=76.7
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
..|+|+|+..+++.+.+.|.+++++..|++.++++.+++++.++|+|+|+.|.++.|.++++++++++|.++.++.||..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~ 85 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPS 85 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 46999999988888899999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 034043 103 G 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 86 ~ 86 (87)
T 1wh3_A 86 S 86 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.56 E-value=5.3e-14 Score=92.95 Aligned_cols=78 Identities=15% Similarity=0.376 Sum_probs=74.9
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..|.|+|+..+|+.+.+.|.+++++..|+..++++.+++++.++|+|.|+.|.++.|..++++++|++|.++++++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999998
No 30
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.56 E-value=3.9e-14 Score=90.28 Aligned_cols=78 Identities=15% Similarity=0.332 Sum_probs=72.4
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
|.|+|+..+|..+.+.|.+++++..|+..++++.+++++.++|+|+|+.|.++.|..++++++|++|.+++++.||..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 578888888999999999999999999999999999999999999999999999999999999999999999999975
No 31
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.53 E-value=7.9e-14 Score=88.32 Aligned_cols=78 Identities=17% Similarity=0.396 Sum_probs=71.1
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
|.|.|+..+|+.+.+.|.+++++..|+...+++.+++++.++++|.|+.|.++.|.+++++++|++|.+++++.||..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 467888888999999999999999999999999999999999999999999999999999999999999999999976
No 32
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=1.5e-13 Score=86.40 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCcEEEEEEecCC-CEEEE-EEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccC
Q 034043 22 SAHINLKVKGQDG-NEVFF-RIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 22 ~~~I~I~v~~~~g-~~~~~-~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~G 99 (105)
+..|.|+|+..+| +.+.+ .+.+++++..|++.++++.+++++.++|+|.|+.|.++.|..++++++|++|.+++++.|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 3579999999888 68889 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034043 100 GALG 103 (105)
Q Consensus 100 G~~~ 103 (105)
|..+
T Consensus 85 G~~~ 88 (89)
T 1wy8_A 85 GPSS 88 (89)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9654
No 33
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.52 E-value=2.1e-13 Score=86.57 Aligned_cols=81 Identities=11% Similarity=0.295 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 18 PVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 18 p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
|......|.|+|+..+|+.+.+.|.+++++..|+..++++.|++++.++|+|+|+.|.++.|..++++++|++|.+++++
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 34446789999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 034043 98 T 98 (105)
Q Consensus 98 ~ 98 (105)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=4.8e-13 Score=90.34 Aligned_cols=81 Identities=15% Similarity=0.306 Sum_probs=71.5
Q ss_pred CCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+...|+|+|+.. ++.+.+.|.+++++..|+..++++.+++++.++|+|.|+.|.++.|..++++++|++|.++.++.||
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 356899999988 8888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 034043 101 AL 102 (105)
Q Consensus 101 ~~ 102 (105)
..
T Consensus 108 ~~ 109 (125)
T 1j8c_A 108 SS 109 (125)
T ss_dssp --
T ss_pred CC
Confidence 75
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=9.7e-14 Score=87.90 Aligned_cols=80 Identities=18% Similarity=0.378 Sum_probs=69.0
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
+-+.|.|+..+|+.+.+.+.+++++..|++.++++.+++++.++++|+|+.|.++.|.+++++++|++|.++.++.||..
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999963
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.51 E-value=2.6e-13 Score=89.40 Aligned_cols=78 Identities=15% Similarity=0.376 Sum_probs=74.6
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..|.|+|+..+++.+.+.|.+++++..|+..++++.+++++.++|+|+|+.|.++.|.+++++++|++|.+++++.||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 579999999889989999999999999999999999999999999999999999999999999999999999999997
No 37
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=2.2e-13 Score=87.13 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=75.9
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
...|+|+|+.. ++.+.+.|.+++++..|++.++++.+++++.++|+|.|+.|.++.|..++++++|++|.++.++.||.
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 46899999987 88889999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 034043 102 L 102 (105)
Q Consensus 102 ~ 102 (105)
.
T Consensus 94 ~ 94 (96)
T 1wx8_A 94 S 94 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 38
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.49 E-value=4.1e-13 Score=84.67 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
+..|.|+|+..+|+.+.+.|.+++++..|+...+++.+++++.++|+|.|+.|.++.|..++++ +|++|.++.+..++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999 899999999998877
Q ss_pred C
Q 034043 102 L 102 (105)
Q Consensus 102 ~ 102 (105)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 6
No 39
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.49 E-value=3e-13 Score=86.83 Aligned_cols=78 Identities=15% Similarity=0.365 Sum_probs=72.7
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
++|+|+..+|+.+.+.|.+++++..|+..++++.+++++.++|+|+|+.|.++.|.+++++.+|++|.++.++.||..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~ 78 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRD 78 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC--
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCc
Confidence 468888888888899999999999999999999999999999999999999999999999999999999999999876
No 40
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=87.12 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=71.1
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..|.|+|+..+|+.+.+.|.+++++..|+..++++.+++++.++|+|.|+.|.++.|.+++++++|++|.++.++.||.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 3689999998899899999999999999999999999999999999999999999999999999999999999999985
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=87.71 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=71.2
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..|+|.|+. ++.+.+.|.+++++..|++.++++.++++++++|+|.|+.|.++.|.+++++++|++|.+++++.||
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 468888887 7888999999999999999999999999999999999999999999999999999999999999998
No 42
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.1e-12 Score=85.52 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=75.1
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
+..|+|+|+...+. +.+.|.+++++..|++.++++.+++.+.++|+|.|+.|.++.|..++++++|++|.|+.++.||.
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 46899999988775 68999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 034043 102 L 102 (105)
Q Consensus 102 ~ 102 (105)
.
T Consensus 94 ~ 94 (106)
T 1wx7_A 94 M 94 (106)
T ss_dssp C
T ss_pred C
Confidence 6
No 43
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.3e-12 Score=84.91 Aligned_cols=83 Identities=14% Similarity=0.298 Sum_probs=76.3
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeecc
Q 034043 19 VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 19 ~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~ 98 (105)
+..+..|.|+|+...++ +.+.|.+++++..|++.++++.+++++.++|+|.|+.|.++.|.+++++++|++|.++.+..
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 34456899999988775 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034043 99 GGAL 102 (105)
Q Consensus 99 GG~~ 102 (105)
||-.
T Consensus 96 ~~p~ 99 (100)
T 1yqb_A 96 HRAM 99 (100)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9764
No 44
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=9.6e-13 Score=86.05 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccC
Q 034043 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 20 ~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~G 99 (105)
..+..|.|+|+..+|+.+.+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|..++++++|++|.++.++..
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 34678999999988988899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCC
Q 034043 100 GAL 102 (105)
Q Consensus 100 G~~ 102 (105)
+..
T Consensus 99 ~~~ 101 (106)
T 1ttn_A 99 QNP 101 (106)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 45
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.43 E-value=1.7e-12 Score=89.32 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=73.1
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..|.|.|+..+|+.+.+.|.+++++..|+...+++.|++++.++++|+|+.|.++.|..++++++|++|+++.++.||+
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 4588888888899999999999999999999999999999999999999999999999999999999999999999995
No 46
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.42 E-value=2.3e-12 Score=83.57 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEe
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~ 95 (105)
++.|.|+|++..|+.+.+++.+++++..|++..+++.|++++++|++|.|+.|.++.|.+++++.||++|+++.
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999874
No 47
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.41 E-value=2.5e-12 Score=87.01 Aligned_cols=77 Identities=16% Similarity=0.383 Sum_probs=72.8
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.+.|.|+..+|+.+.+.+.+++++..|++.++++.+++++.++|+|+|+.|.++.|.+++++++|++|.++.++.||
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 47788888889889999999999999999999999999999999999999999999999999999999999999998
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-12 Score=78.75 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=71.3
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
+..|.|+|+..+|+.+.+.+.+++++..|++..+++.+++++.++++|.|+.|.++.|..++++.+|++|.++.+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 3579999998888888999999999999999999999999999999999999999999999999999999998764
No 49
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.40 E-value=3.1e-12 Score=89.39 Aligned_cols=87 Identities=16% Similarity=0.376 Sum_probs=76.0
Q ss_pred CCCCCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEE
Q 034043 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 15 ~~~p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
...|......|.|.|+..+|+.+.+.|.+++++..|+...+++.|+++++++|+|.|..|.++.|..++++.++++|.++
T Consensus 11 ~~~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~ 90 (172)
T 3u30_A 11 SSGLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 90 (172)
T ss_dssp --------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeee
Confidence 34445556789999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 034043 95 LHQTGGA 101 (105)
Q Consensus 95 ~~q~GG~ 101 (105)
.+..||.
T Consensus 91 ~~~~gg~ 97 (172)
T 3u30_A 91 LRLRGGM 97 (172)
T ss_dssp ECCCCCE
T ss_pred ecccccc
Confidence 9998874
No 50
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=3.4e-12 Score=82.01 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=76.0
Q ss_pred CCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCC-CCccccCCCCCCEEEEEeecc
Q 034043 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE-QTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 20 ~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~-~Tp~dl~medgD~Idv~~~q~ 98 (105)
+....|.|.|+...+ .+.+.|.+++++..|+...+++.|+++++++++|.|+.|.++ .|.+++++.+|++|.++.++.
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 345679999998877 788999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCCC
Q 034043 99 GGAL 102 (105)
Q Consensus 99 GG~~ 102 (105)
||..
T Consensus 90 gg~~ 93 (94)
T 2kan_A 90 NRAK 93 (94)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9864
No 51
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=5.1e-12 Score=82.85 Aligned_cols=81 Identities=11% Similarity=0.160 Sum_probs=73.2
Q ss_pred CCCCCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEE
Q 034043 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 15 ~~~p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
.+..+...+.|.|+|++..|+.+.+.|.+++++..|++..+++.|++++++|++|.|+.|.++.|.+++++.++++|+++
T Consensus 19 ~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 19 PRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred cccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 33333444579999999889999999999999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 034043 95 L 95 (105)
Q Consensus 95 ~ 95 (105)
+
T Consensus 99 ~ 99 (100)
T 1uh6_A 99 Y 99 (100)
T ss_dssp C
T ss_pred e
Confidence 5
No 52
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.4e-12 Score=83.71 Aligned_cols=80 Identities=14% Similarity=0.387 Sum_probs=75.5
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCCC
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 103 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~~ 103 (105)
..+|.|+..+|+.+.+.|.+++++..|+..++++.+++++.++|+|.|+.|.++.|.+++++.+|++|.++.++.||...
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~ 88 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMG 88 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCcee
Confidence 46788888889999999999999999999999999999999999999999999999999999999999999999999763
No 53
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=6.9e-12 Score=76.85 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=69.6
Q ss_pred cEEEEEEecCCCEE-EEE-EecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 24 HINLKVKGQDGNEV-FFR-IKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 24 ~I~I~v~~~~g~~~-~~~-ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
.+.|+|+..+|+.+ .+. +.+++++..|+..++++.+++++.++++|.|+.|.++.|.+++++++|++|.+++++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 47899998888885 798 999999999999999999999999999999999999999999999999999999876
No 54
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.37 E-value=7.1e-12 Score=76.27 Aligned_cols=72 Identities=14% Similarity=0.356 Sum_probs=67.8
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
|.|+|+. .|+.+.+.+.+++++..|+..+++..|++++.++++|.|+.|.++.|.+++++.+|++|.+..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7888888 78888999999999999999999999999999999999999999999999999999999998764
No 55
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.36 E-value=4.9e-12 Score=89.19 Aligned_cols=78 Identities=15% Similarity=0.373 Sum_probs=72.4
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
|+|.|+..+|+.+.+.|.+++++..|+...+++.++++++++++|.|+.|.++.|..++++++|++|++++++.||..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence 468888889999999999999999999999999999999999999999999999999999999999999999999975
No 56
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=5.4e-12 Score=80.35 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=73.4
Q ss_pred CcEEEEEEecCCC--EEEEEEecCcHHHHHHHHHHHHh--CCCcccEEEEECCeecCCCCCcccc--CCCCCCEEEEEee
Q 034043 23 AHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQ--SVELNSIAFLFDGRRLRGEQTPDEL--EMEDGDEIDAMLH 96 (105)
Q Consensus 23 ~~I~I~v~~~~g~--~~~~~ik~tt~l~kL~~~y~~~~--g~~~~~~~F~fdG~~L~~~~Tp~dl--~medgD~Idv~~~ 96 (105)
..|+|+|+..++. .+.+.+.+++++..|++..+++. +++++++|++|.|+.|.++.|.+++ +++++.+|+++.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4688999988777 46666779999999999999998 9999999999999999999999999 9999999999999
Q ss_pred ccCCCCC
Q 034043 97 QTGGALG 103 (105)
Q Consensus 97 q~GG~~~ 103 (105)
..||..+
T Consensus 86 ~~gg~~~ 92 (93)
T 1wgd_A 86 VKSGPSS 92 (93)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9998653
No 57
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.34 E-value=1.7e-11 Score=76.83 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=69.9
Q ss_pred CCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.+..|.|+|+..+|+.+.+.+.+++++..|++..+++.+++++.++++|.|+.|.++.|..++++ +|++|.++.+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 34679999999999999999999999999999999999999999999999999999999999999 8999998764
No 58
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.32 E-value=9.1e-12 Score=89.68 Aligned_cols=79 Identities=15% Similarity=0.339 Sum_probs=76.4
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
.|+|.|+..+|+.+.+.|.+++++..|+...+++.++++++++|+|.|+.|.++.|.+++++++|++|++++++.||..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999975
No 59
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.32 E-value=9e-12 Score=81.90 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=75.6
Q ss_pred CcEEEEEEec---CCCEEEEEEec-CcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeecc
Q 034043 23 AHINLKVKGQ---DGNEVFFRIKR-STQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 23 ~~I~I~v~~~---~g~~~~~~ik~-tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~ 98 (105)
..|+|+|+.. +|+.+.+.+.+ ++++..|+...++..|++++.++++|.|..|.++.|..++++.+|++|.+++++.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 5799999988 78888999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034043 99 GGAL 102 (105)
Q Consensus 99 GG~~ 102 (105)
||..
T Consensus 106 GGk~ 109 (111)
T 1we6_A 106 SGPS 109 (111)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9954
No 60
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=2.7e-11 Score=77.54 Aligned_cols=78 Identities=10% Similarity=0.227 Sum_probs=70.7
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHH---hCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR---QSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~---~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
|+|.|+..+|+.+.+.|.+++++..|+..+++. .|++++.++|+|.|+.|.++.|.+++++.+|++|.++.+...+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 467888888998999999999999999999999 68999999999999999999999999999999999998765544
Q ss_pred C
Q 034043 102 L 102 (105)
Q Consensus 102 ~ 102 (105)
.
T Consensus 81 ~ 81 (95)
T 1uel_A 81 S 81 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 61
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.30 E-value=1.6e-11 Score=81.24 Aligned_cols=80 Identities=14% Similarity=0.276 Sum_probs=73.9
Q ss_pred CcEEEEEEecC----------CCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEE
Q 034043 23 AHINLKVKGQD----------GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 92 (105)
Q Consensus 23 ~~I~I~v~~~~----------g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Id 92 (105)
..|+|.|+.++ |+.+.+.|.+++++..|+...++..|++++.++++|.|..|.++.|..++++.+|++|.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 47888888764 45678999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 034043 93 AMLHQTGGAL 102 (105)
Q Consensus 93 v~~~q~GG~~ 102 (105)
+++++.||..
T Consensus 104 lv~rl~GGk~ 113 (115)
T 1we7_A 104 LALKERSGPS 113 (115)
T ss_dssp EEECCCSCCS
T ss_pred EEEEcCCCCC
Confidence 9999999964
No 62
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.30 E-value=5e-11 Score=73.93 Aligned_cols=75 Identities=9% Similarity=0.233 Sum_probs=69.5
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHH---hCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR---QSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~---~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
..|.|.|+..+|+.+.+.|.+++++..|++..+++ .++++++++|+|.|+.|.++.|.+++++.+|++|.++.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 36899999988998999999999999999999998 7899999999999999999999999999999999998764
No 63
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.30 E-value=5e-11 Score=77.36 Aligned_cols=77 Identities=13% Similarity=0.315 Sum_probs=71.9
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~G 99 (105)
...|.|.|+.. +..+.+.|.+++++..|+..+++..|++++.++|+|.|+.|.++.|..++++.+|++|.++.+...
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 46899999987 788899999999999999999999999999999999999999999999999999999999987654
No 64
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.94 E-value=3.1e-13 Score=82.50 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=70.0
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~G 99 (105)
+.|.|+..+|..+.+.+.+++++..|++.+++..+++++.++|+|+|+.|.++.|.+++++++|++|.++++..|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 467777878888889999999999999999999999999999999999999999999999999999999999876
No 65
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.2e-11 Score=80.14 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCCcEEEEEE-ecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 20 DQSAHINLKVK-GQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 20 ~~~~~I~I~v~-~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
.....|+|+|+ ...+..+.+.+.++.++..|+++++++.+++.+.++|+|.|+.|.+++|..++++++|.+|.+.++.
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 33456899987 6667889999999999999999999999999999999999999999999999999999999998765
No 66
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.1e-11 Score=79.75 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=68.7
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~G 99 (105)
|+|+|+..+|+.+.+.|.+++++..|+..++++.|+++++++|+|.|+.|.++.|..++++++|++|.++++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 578888888999999999999999999999999999999999999999999999999999999999999987653
No 67
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=4.5e-11 Score=77.52 Aligned_cols=81 Identities=10% Similarity=0.095 Sum_probs=72.7
Q ss_pred CcEEEEEEecCC----CEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCC-CCccccCCCCCCEEEEEeec
Q 034043 23 AHINLKVKGQDG----NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE-QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 23 ~~I~I~v~~~~g----~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~-~Tp~dl~medgD~Idv~~~q 97 (105)
..|+|.|+...+ +.+.+.|.+++++..|+...+++.++++++++++|.|+.|.++ .|..++++.+|++|.+..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 357888877543 5778999999999999999999999999999999999999877 69999999999999999999
Q ss_pred cCCCCC
Q 034043 98 TGGALG 103 (105)
Q Consensus 98 ~GG~~~ 103 (105)
.||.+.
T Consensus 86 ~gg~~~ 91 (102)
T 1v5o_A 86 NVGLRT 91 (102)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 999763
No 68
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.25 E-value=6.1e-13 Score=89.71 Aligned_cols=77 Identities=16% Similarity=0.391 Sum_probs=0.6
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
|.|.|+..+|..+.+.|.+++++..|+...++..+++++.++|+|.|..|.++.|..++++++|++|.+++++.||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 46777887888889999999999999999999999999999999999999999999999999999999999999996
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.23 E-value=5.1e-11 Score=83.18 Aligned_cols=77 Identities=16% Similarity=0.383 Sum_probs=68.3
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.+.|.|+..+|+.+.+.|.+++++..|+...+++.|+++++++++|+|+.|.++.|..++++++|++|.++++.+||
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 46677778888999999999999999999999999999999999999999999999999999999999999999997
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.23 E-value=9.4e-11 Score=79.19 Aligned_cols=76 Identities=16% Similarity=0.394 Sum_probs=71.7
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+.|+|+..+|+.+.+.+.+++++..|+..++++.|++++.++|+|.|+.|.++.|.+++++.+|++|.+..++.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 4678888888889999999999999999999999999999999999999999999999999999999999998876
No 71
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.23 E-value=8.2e-11 Score=74.94 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=70.8
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCC-CCccccCCCCCCEEEEEeeccCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE-QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~-~Tp~dl~medgD~Idv~~~q~GG 100 (105)
...|.|+|+..+++.+.+.|.+++++..|+..++++. +++++|+|.|+.|.++ .|..++++++|++|.++.++.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 3579999998888888999999999999999999987 7899999999999998 99999999999999999988765
Q ss_pred CC
Q 034043 101 AL 102 (105)
Q Consensus 101 ~~ 102 (105)
..
T Consensus 82 ~~ 83 (95)
T 1wia_A 82 AV 83 (95)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 72
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.22 E-value=8.7e-11 Score=73.95 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=69.9
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCee-cCCCCCccccCCCCCCEEEEEee
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR-LRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~-L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
..++|.|+...|+.+.+.|.+++++..|++..+++.|+++++++++|.|+. |.++.|.+++++.+|++|.++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 368899999899999999999999999999999999999999999999999 99999999999999999998864
No 73
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.21 E-value=1.3e-10 Score=75.53 Aligned_cols=77 Identities=14% Similarity=0.300 Sum_probs=68.4
Q ss_pred CCCcEEEEEEecCCCEEEE--EEecCcHHHHHHHHH-HHHhCCCcccEEEEECCeecCCCCCccccCC-CCCCEEEEEee
Q 034043 21 QSAHINLKVKGQDGNEVFF--RIKRSTQLKKLMNAY-CDRQSVELNSIAFLFDGRRLRGEQTPDELEM-EDGDEIDAMLH 96 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~--~ik~tt~l~kL~~~y-~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~m-edgD~Idv~~~ 96 (105)
....|.|.|++..|+.+.+ .+.++++...|++.. ++..|++++++|++|.|+.|.++.|.+++++ ++|++|.++++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 3568999999988886666 556999999999998 8888999999999999999999999999999 99999999987
Q ss_pred c
Q 034043 97 Q 97 (105)
Q Consensus 97 q 97 (105)
+
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.21 E-value=1.3e-12 Score=91.13 Aligned_cols=77 Identities=16% Similarity=0.396 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
|.|.|+..+|..+.+.|.+++++..|+...++..++++++++|+|.|..|.++.|..++++++|++|.+++++.||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 46777777888889999999999999999999999999999999999999999999999999999999999999995
No 75
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=5.1e-11 Score=78.58 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=73.9
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCc---------------ccEEEEECCeecC-CCCCccccCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL---------------NSIAFLFDGRRLR-GEQTPDELEM 85 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~---------------~~~~F~fdG~~L~-~~~Tp~dl~m 85 (105)
++.|+|.|+..+|..+.+.|.+++++..|+.+.+++.++++ .+++++|.|+.|. ++.|.+++++
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 34599999999999999999999999999999999998865 4789999999996 6799999999
Q ss_pred CCCCEEEEEeeccCCCC
Q 034043 86 EDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 86 edgD~Idv~~~q~GG~~ 102 (105)
++|++|.++.++.|-++
T Consensus 85 ~~g~~l~lv~~lr~~~~ 101 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKSG 101 (105)
T ss_dssp CSSEEEEEEECSCSCCC
T ss_pred CCCCEEEEEehhccCCC
Confidence 99999999999999776
No 76
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=1.4e-10 Score=75.96 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=67.6
Q ss_pred EEEEEEecC----CCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 25 INLKVKGQD----GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 25 I~I~v~~~~----g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.+|.|+..+ ++.+.+.|.++++...|+...+++.|+++++++++|.|+.|.++.|.+++++.+|.+| +++...|.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 345555555 5678999999999999999999999999999999999999999999999999999999 77777775
Q ss_pred CC
Q 034043 101 AL 102 (105)
Q Consensus 101 ~~ 102 (105)
..
T Consensus 95 ~~ 96 (100)
T 1wju_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 77
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=4.8e-11 Score=77.58 Aligned_cols=76 Identities=13% Similarity=0.334 Sum_probs=67.2
Q ss_pred CCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
.+-.|+|+|++ .|+.+.+.|.+++++..|++..+++.|++++.++++|.|+.|.++.|.+++++++|++|.++.+.
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 34568888887 77778899999999999999999999999999999999999999999999999999999998753
No 78
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.09 E-value=4.8e-10 Score=71.90 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=69.9
Q ss_pred CCCCCCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEE
Q 034043 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 15 ~~~p~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
++.+......|+|+|+. .++.+.+.+.+++++..|++..+++.++++++++++|.|..| ++.|..++++.++++|.++
T Consensus 8 ~~~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 8 DAGGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVV 85 (95)
T ss_dssp CCCCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEEC
T ss_pred CCCCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEE
Confidence 34444445689999985 467788999999999999999999999999999999999999 5569999999999999998
Q ss_pred eecc
Q 034043 95 LHQT 98 (105)
Q Consensus 95 ~~q~ 98 (105)
....
T Consensus 86 ~~~~ 89 (95)
T 1v86_A 86 GSTI 89 (95)
T ss_dssp CSSC
T ss_pred eccc
Confidence 6554
No 79
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-09 Score=72.67 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHH------HhCC--CcccEEEEECCeecCCCCCccccCCCCCC--EE
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD------RQSV--ELNSIAFLFDGRRLRGEQTPDELEMEDGD--EI 91 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~------~~g~--~~~~~~F~fdG~~L~~~~Tp~dl~medgD--~I 91 (105)
...|.|+|+...|+.+.+.|.+++++..|++..++ +.++ +++++||+|.|+.|.++.|.+++++.+++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45799999998899999999999999999999999 5676 48999999999999999999999999888 67
Q ss_pred EEEeeccCCCC
Q 034043 92 DAMLHQTGGAL 102 (105)
Q Consensus 92 dv~~~q~GG~~ 102 (105)
.++++..++..
T Consensus 95 hlv~r~~~~~~ 105 (125)
T 2gow_A 95 HLVARETLPEP 105 (125)
T ss_dssp EEEECSCCSSS
T ss_pred EEEecCCCCcc
Confidence 88888877544
No 80
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=4.3e-10 Score=71.61 Aligned_cols=73 Identities=14% Similarity=0.292 Sum_probs=66.8
Q ss_pred EEEEEEecCCCEEEEEEe--cCcHHHHHHHHH-HHHhCCCcccEEEEECCeecCCCCCccccCC-CCCCEEEEEeec
Q 034043 25 INLKVKGQDGNEVFFRIK--RSTQLKKLMNAY-CDRQSVELNSIAFLFDGRRLRGEQTPDELEM-EDGDEIDAMLHQ 97 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik--~tt~l~kL~~~y-~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~m-edgD~Idv~~~q 97 (105)
|.|.|++..|+.+.+.|. ++++...|++.. +++.|++++++|++|.|+.|.++.|.+++++ .+|.+|.|..+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 678889988887877766 999999999999 9999999999999999999999999999999 799999998754
No 81
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.02 E-value=2.6e-09 Score=67.12 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=61.0
Q ss_pred cCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 32 QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 32 ~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
..|+.+.+.+.+++++..|++..++..+++++.++++|.|+.|.++.|..++++.+|++|.++..
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 46777889999999999999999999999999999999999999999999999999999998764
No 82
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.01 E-value=3.7e-09 Score=69.73 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCcEEEEEEecCC--CEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCC-CCCCEEEEEee
Q 034043 21 QSAHINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEM-EDGDEIDAMLH 96 (105)
Q Consensus 21 ~~~~I~I~v~~~~g--~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~m-edgD~Idv~~~ 96 (105)
.+-++.|.|.+..+ ..+.+.|.+++++..|++...++.|+++++.|++|.|+.+.++.|.+++++ ++|++|.+++-
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 34577777777664 578999999999999999999999999999999999998899999999999 69999998864
No 83
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=1.7e-09 Score=70.59 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=66.7
Q ss_pred cEEEEEEecCC---CEEEEEE--------ec-CcHHHHHHHHHHHHh--CCCccc-EEEEECCeecCCCCCccccCCCCC
Q 034043 24 HINLKVKGQDG---NEVFFRI--------KR-STQLKKLMNAYCDRQ--SVELNS-IAFLFDGRRLRGEQTPDELEMEDG 88 (105)
Q Consensus 24 ~I~I~v~~~~g---~~~~~~i--------k~-tt~l~kL~~~y~~~~--g~~~~~-~~F~fdG~~L~~~~Tp~dl~medg 88 (105)
.|+|.|+..++ ..+.+.| .+ ++++..|+...+++. +++++. ++|+|.|+.|.++.|..++++++|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g 91 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPG 91 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCC
Confidence 57788887777 6677774 44 499999999999999 999999 999999999999999999999999
Q ss_pred CEEEEEeeccC
Q 034043 89 DEIDAMLHQTG 99 (105)
Q Consensus 89 D~Idv~~~q~G 99 (105)
++|.++.+...
T Consensus 92 ~~i~lv~~~~~ 102 (107)
T 1x1m_A 92 STVHVLRKSWS 102 (107)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEeCCCC
Confidence 99999987653
No 84
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.99 E-value=4e-09 Score=72.31 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=70.3
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEE-E-CCeecCCCCCccccCCCCCCEEEEEeec-cCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL-F-DGRRLRGEQTPDELEMEDGDEIDAMLHQ-TGG 100 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~-f-dG~~L~~~~Tp~dl~medgD~Idv~~~q-~GG 100 (105)
|.|.|+..+|+.+.+.+.+++++..|+...++..|+++++++|+ | .|..|.++.|.+++++.+|++|.++.++ .++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 67888888899999999999999999999999999999999999 9 7999999999999999999999999884 443
No 85
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.98 E-value=4.4e-09 Score=71.39 Aligned_cols=79 Identities=10% Similarity=0.223 Sum_probs=70.1
Q ss_pred CcEEEEEEecCCCEE-EEEEecCcHHHHHHHHHHH-----HhCCCc--ccEEEEECCeecCCCCCccccCCCCCC-----
Q 034043 23 AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCD-----RQSVEL--NSIAFLFDGRRLRGEQTPDELEMEDGD----- 89 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~-~~~ik~tt~l~kL~~~y~~-----~~g~~~--~~~~F~fdG~~L~~~~Tp~dl~medgD----- 89 (105)
+.+.|+|+..+|+.+ .+.+.++++...|++..++ +.++++ +++||+|.|+.|.++.|.+++++.+|+
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 689999999999988 6999999999999999954 445665 799999999999999999999999994
Q ss_pred -EEEEEeeccCCC
Q 034043 90 -EIDAMLHQTGGA 101 (105)
Q Consensus 90 -~Idv~~~q~GG~ 101 (105)
++.++.+..||.
T Consensus 95 ~tmhlVlrl~g~~ 107 (126)
T 1se9_A 95 TTMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEEEEEeccCCcc
Confidence 689999988874
No 86
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.97 E-value=3.9e-09 Score=70.95 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=66.8
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCC-------CCCEEEEEeec
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEME-------DGDEIDAMLHQ 97 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~me-------dgD~Idv~~~q 97 (105)
|.|+++... ..+.+.|.+++++..|+...+++.|++++++|++|+|+.|.++.|..++++. ++.+|++..+
T Consensus 3 mfl~ir~~k-tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr- 80 (118)
T 2fnj_B 3 VFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR- 80 (118)
T ss_dssp EEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-
T ss_pred EEEEEecCC-EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-
Confidence 567776532 3578999999999999999999999999999999999999999999999999 6999999999
Q ss_pred cCCC
Q 034043 98 TGGA 101 (105)
Q Consensus 98 ~GG~ 101 (105)
.||.
T Consensus 81 ~~g~ 84 (118)
T 2fnj_B 81 ADDT 84 (118)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 6664
No 87
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.96 E-value=2.7e-08 Score=66.52 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=68.1
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHH------HhCC--CcccEEEEECCeecCCCCCccccCCCCCC--EE
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD------RQSV--ELNSIAFLFDGRRLRGEQTPDELEMEDGD--EI 91 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~------~~g~--~~~~~~F~fdG~~L~~~~Tp~dl~medgD--~I 91 (105)
...|.|+|+...|..+.|.|.+++++..|++..++ +.++ +++++||+|.|+.|.++.|..++++..++ +|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34799999998899999999999999999999999 4464 58999999999999999999999998886 46
Q ss_pred EEEeeccCC
Q 034043 92 DAMLHQTGG 100 (105)
Q Consensus 92 dv~~~q~GG 100 (105)
+++++..+.
T Consensus 94 hLvlr~~~~ 102 (116)
T 1wgh_A 94 HLVARETLP 102 (116)
T ss_dssp EEEECSSCS
T ss_pred EEEccCCCC
Confidence 666665543
No 88
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.95 E-value=9.3e-09 Score=64.92 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=66.9
Q ss_pred CcEEEEEEecCCCEEEEEEecC-----cHHHHHHHHHHHHhCCCcccEEEEECCeecCC-CCCccccCCCCCCEEEEEee
Q 034043 23 AHINLKVKGQDGNEVFFRIKRS-----TQLKKLMNAYCDRQSVELNSIAFLFDGRRLRG-EQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~t-----t~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~-~~Tp~dl~medgD~Idv~~~ 96 (105)
..|+|+|+. .+..+.+.+.++ +++..|+...+++.|++++.++++|.|..|.+ +.|..++++.+|++|.++..
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999988 477778999995 99999999999999999999999999999988 55899999999999999876
Q ss_pred cc
Q 034043 97 QT 98 (105)
Q Consensus 97 q~ 98 (105)
..
T Consensus 85 ~~ 86 (92)
T 1wxv_A 85 KN 86 (92)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 89
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.94 E-value=4.3e-09 Score=67.68 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=65.3
Q ss_pred CcEEEEEEecCCCEE-EEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 23 AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~-~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
..|+|+|+. .++.+ .+.|.+++++..|+...+++.|+++++++++|.|..|.++ |..++++.+|++|.++..
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 468899986 46777 5999999999999999999999999999999999999988 999999999999988654
No 90
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.93 E-value=2.4e-09 Score=69.60 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=63.7
Q ss_pred CCCCCcEEEEEEecCCC--EEEEEEecCcHHHHHHHHHHHHh-CCC-cccEEEEECCeecCCCCCcccc--CCCCCCEEE
Q 034043 19 VDQSAHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQ-SVE-LNSIAFLFDGRRLRGEQTPDEL--EMEDGDEID 92 (105)
Q Consensus 19 ~~~~~~I~I~v~~~~g~--~~~~~ik~tt~l~kL~~~y~~~~-g~~-~~~~~F~fdG~~L~~~~Tp~dl--~medgD~Id 92 (105)
......|.|+|+..++. .+.+.+.+++++..|++..+++. +.+ ++++|++|.|+.|.++.|.+++ +++++.+|.
T Consensus 18 ~~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tih 97 (99)
T 2kdb_A 18 YFQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVH 97 (99)
T ss_dssp -----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEE
Confidence 34456799999998776 57888999999999999999875 555 5999999999999999999999 999999998
Q ss_pred EE
Q 034043 93 AM 94 (105)
Q Consensus 93 v~ 94 (105)
++
T Consensus 98 Lv 99 (99)
T 2kdb_A 98 LV 99 (99)
T ss_dssp EC
T ss_pred eC
Confidence 63
No 91
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.90 E-value=3.5e-09 Score=67.05 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=65.1
Q ss_pred cEEEEEEecCCCEEEE-EEecCcHHHHHHHHHHHHhCCCcccEEEE---ECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 24 HINLKVKGQDGNEVFF-RIKRSTQLKKLMNAYCDRQSVELNSIAFL---FDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~-~ik~tt~l~kL~~~y~~~~g~~~~~~~F~---fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.|+|+|+. .++.+.+ .|.+++++..|+...+++.|+++++++++ |.|..|.++.|.+++++.+|++|.++..
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 57777775 5677778 89999999999999999999999999999 9999999999999999999999988754
No 92
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.89 E-value=1.2e-08 Score=78.17 Aligned_cols=77 Identities=13% Similarity=0.340 Sum_probs=70.4
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeecc
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~ 98 (105)
...|+|.|+..+++.+.+.|.+++++..|++..+++.++++++++++|.|+.|.++.|.+++++.++++|.++++++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 45788999998888889999999999999999999999999999999999999999999999999999999998753
No 93
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.87 E-value=2.4e-08 Score=64.36 Aligned_cols=74 Identities=8% Similarity=0.093 Sum_probs=65.1
Q ss_pred CCCcEEEEEEecCCC--EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEEC--Ce---ec-CCCCCccccCCCCCCEEE
Q 034043 21 QSAHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GR---RL-RGEQTPDELEMEDGDEID 92 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~--~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fd--G~---~L-~~~~Tp~dl~medgD~Id 92 (105)
.+..|+|.|.+.... .+.+++.+++++..|+...+++.|++++++|++|. |. .| .++.|..++++++|++|.
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 356899999986654 67899999999999999999999999999999997 45 44 889999999999999998
Q ss_pred EE
Q 034043 93 AM 94 (105)
Q Consensus 93 v~ 94 (105)
|+
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 94
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.82 E-value=4.6e-08 Score=65.73 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=64.8
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCC-------CCEEEEEeec
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMED-------GDEIDAMLHQ 97 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~med-------gD~Idv~~~q 97 (105)
+.|+|+.. +..+.+.+++++++..|+....++.|+++++.||+|+|+.|.++.|.+++++++ +.+|.+.++.
T Consensus 3 vFl~Ikr~-ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred eEEEEecC-CEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 45555542 346788999999999999999999999999999999999999999999999999 9999999986
No 95
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.78 E-value=1.1e-08 Score=66.91 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=65.1
Q ss_pred cEEEEEEecCCCEEEEEEe-cCcHHHHHHHHHHHHhCCCcccEEEEECCe-----------e----cCCCCCccccCCCC
Q 034043 24 HINLKVKGQDGNEVFFRIK-RSTQLKKLMNAYCDRQSVELNSIAFLFDGR-----------R----LRGEQTPDELEMED 87 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik-~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~-----------~----L~~~~Tp~dl~med 87 (105)
.|.|+|++.+|.. .+.|. +++++..|++..+++.++++++++++|.|. . +.++.|..++++.+
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999998875 78899 999999999999999999999999999988 4 47889999999999
Q ss_pred CCEEEEEee
Q 034043 88 GDEIDAMLH 96 (105)
Q Consensus 88 gD~Idv~~~ 96 (105)
||+|.+...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999988765
No 96
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.76 E-value=4.1e-08 Score=63.53 Aligned_cols=75 Identities=9% Similarity=0.079 Sum_probs=65.2
Q ss_pred CCCcEEEEEEecCC--CEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCe---e----cCCCCCccccCCCCCCEE
Q 034043 21 QSAHINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR---R----LRGEQTPDELEMEDGDEI 91 (105)
Q Consensus 21 ~~~~I~I~v~~~~g--~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~---~----L~~~~Tp~dl~medgD~I 91 (105)
.+..|.|.|.+... ..+.++|.+++++..|+.+..++.|++++++|++|.|. . +.++.|..++++++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 35688999987554 36789999999999999999999999999999999873 3 478889999999999999
Q ss_pred EEEe
Q 034043 92 DAML 95 (105)
Q Consensus 92 dv~~ 95 (105)
.|+-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8864
No 97
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.74 E-value=1.6e-08 Score=79.09 Aligned_cols=80 Identities=10% Similarity=0.225 Sum_probs=71.5
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHH---HhCCCcccEEEEECCeecCCCCCccccCCCCCCEE-EEEeecc
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD---RQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEI-DAMLHQT 98 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~---~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~I-dv~~~q~ 98 (105)
..|.|+|+...|+.+.+.|.+++++..|+...++ +.+++.+++||+|.|+.|.++.|..++++.+|++| .++.+..
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4688888888888889999999999999999999 45699999999999999999999999999999988 7777777
Q ss_pred CCCC
Q 034043 99 GGAL 102 (105)
Q Consensus 99 GG~~ 102 (105)
|+..
T Consensus 86 ~~~~ 89 (368)
T 1oqy_A 86 AGQG 89 (368)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7653
No 98
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.73 E-value=1.3e-09 Score=78.54 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=1.0
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
|.|.|+..+|..+.+.|.+++++..|+...++..|+++++++|+|.|+.|.++.|.. ++++|++++++.||.-
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 457777778888899999999999999999999999999999999999999988877 9999999999999863
No 99
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.70 E-value=1.4e-07 Score=62.86 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=64.0
Q ss_pred CcEEEEEEecCCC-EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECC---e---e-cCCCCCccccCCCCCCEEEEE
Q 034043 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG---R---R-LRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 23 ~~I~I~v~~~~g~-~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG---~---~-L~~~~Tp~dl~medgD~Idv~ 94 (105)
..|+|.|.+.... .+.+++.+++++..|+...+++.|++++++|++|.| . . +.++.|..++++++|++|.|.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 3689999886553 578999999999999999999999999999999977 3 2 378899999999999999988
Q ss_pred e
Q 034043 95 L 95 (105)
Q Consensus 95 ~ 95 (105)
.
T Consensus 85 d 85 (122)
T 1t0y_A 85 D 85 (122)
T ss_dssp E
T ss_pred e
Confidence 5
No 100
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.69 E-value=7.5e-08 Score=61.41 Aligned_cols=72 Identities=10% Similarity=0.046 Sum_probs=63.1
Q ss_pred cEEEEEEecCCC-EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECC---ee----cCCCCCccccCCCCCCEEEEEe
Q 034043 24 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG---RR----LRGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 24 ~I~I~v~~~~g~-~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG---~~----L~~~~Tp~dl~medgD~Idv~~ 95 (105)
.|+|.|.+.... .+.+++.+++++..|+...+++.|++++++|++|.| .. +.++.|..++++++|++|.|.-
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 488988876543 578999999999999999999999999999999976 43 4789999999999999998875
No 101
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=7.4e-08 Score=61.08 Aligned_cols=70 Identities=13% Similarity=0.278 Sum_probs=62.0
Q ss_pred cEEEEEEecCCCEE--EE-EEecCcHHHHHHHHHHHH-hCCCcccEEEEEC--CeecCCCCCccccCCCCCCEEEE
Q 034043 24 HINLKVKGQDGNEV--FF-RIKRSTQLKKLMNAYCDR-QSVELNSIAFLFD--GRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 24 ~I~I~v~~~~g~~~--~~-~ik~tt~l~kL~~~y~~~-~g~~~~~~~F~fd--G~~L~~~~Tp~dl~medgD~Idv 93 (105)
.|.|.|++..|... .+ .|.+++++..|++.+++. .+++++++||+|. |..|.++.|.+++++.++.+|.+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 58899998877654 47 899999999999999995 7899999999877 99999999999999999998765
No 102
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.62 E-value=1.8e-07 Score=59.11 Aligned_cols=73 Identities=4% Similarity=-0.019 Sum_probs=62.3
Q ss_pred cEEEEEEecC--CCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-------CCeecCCCCCccccCCCCCCEEEEE
Q 034043 24 HINLKVKGQD--GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-------DGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 24 ~I~I~v~~~~--g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-------dG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
.|.|.|.... ......++.+++++..|+.+..++.|++++++|++| .|..+.++.|..++++++|.+|.++
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 3566666543 334578999999999999999999999999999996 4788999999999999999999987
Q ss_pred ee
Q 034043 95 LH 96 (105)
Q Consensus 95 ~~ 96 (105)
-.
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 103
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.54 E-value=8e-08 Score=60.15 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=60.6
Q ss_pred EEEEEEecCCCEEEEE-EecCcHHHHHHHHHHHHhCCCcccEEEEEC--CeecC---CCCCccccCCCCCCEEEEEeec
Q 034043 25 INLKVKGQDGNEVFFR-IKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GRRLR---GEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~-ik~tt~l~kL~~~y~~~~g~~~~~~~F~fd--G~~L~---~~~Tp~dl~medgD~Idv~~~q 97 (105)
|.|+|+..+|..+ +. +.+++++..|+...+++.+++++.++|+|. ++.+. ++.|.+++++.+|++|.|..+.
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 4678888888654 67 889999999999999999999888888886 46664 6789999999999999887553
No 104
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.48 E-value=1.2e-06 Score=55.85 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCcEEEEEEec---CCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECC-------eec-CCCCCccccCCCCCCE
Q 034043 22 SAHINLKVKGQ---DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG-------RRL-RGEQTPDELEMEDGDE 90 (105)
Q Consensus 22 ~~~I~I~v~~~---~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG-------~~L-~~~~Tp~dl~medgD~ 90 (105)
+..|+|.|++. ++..+..++.++.++..|+...++..|+++.++++.|.+ ..| .+..|..+++++||++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 45789988863 566788999999999999999999999999999998863 224 6788899999999999
Q ss_pred EEEEeec
Q 034043 91 IDAMLHQ 97 (105)
Q Consensus 91 Idv~~~q 97 (105)
|.|....
T Consensus 87 I~V~d~~ 93 (97)
T 1wjn_A 87 LLVRWSG 93 (97)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998754
No 105
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.32 E-value=1.8e-06 Score=66.11 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEE---ECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL---FDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~---fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.+.|+|+|+. .|+.+.+.|.+++++..|+...++..|+++.+++++ |.|..+.++.|..++++.+|.+|.++-.
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 4578888887 577888999999999999999999999999999999 8999999999999999999999988743
No 106
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=3.7e-06 Score=54.61 Aligned_cols=73 Identities=4% Similarity=0.116 Sum_probs=60.8
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
.+.++++. .|+.+.+.|.+++++..|+...+++.|+++++++++| .+.++.++.|..++++..|++|.++..-
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 34455444 6788899999999999999999999999999999986 3334888889999999999999886543
No 107
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.95 E-value=2.9e-05 Score=49.74 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=67.2
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
+.|.|...+++...++|.++++|..|.+.-|+++|++.++..+.|.++.|+.+..-.-.+|-+|..+++...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 378888899999999999999999999999999999999999999999999999999999999999998753
No 108
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.90 E-value=5.5e-06 Score=51.58 Aligned_cols=70 Identities=11% Similarity=0.214 Sum_probs=56.1
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCee-----cCCCCCccccCCCCCCEEEEE
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR-----LRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~-----L~~~~Tp~dl~medgD~Idv~ 94 (105)
.+.|+|++.+|. ..+.+.+++++..|++..++..+++.+.+.+++.-.+ ..++.|.+++++..||+|.|.
T Consensus 4 ~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 478999999885 4567889999999999999999998766555444333 348889999999999998764
No 109
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=0.0011 Score=42.17 Aligned_cols=66 Identities=12% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEEC---CeecCCCCCccccCCCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD---GRRLRGEQTPDELEMED 87 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fd---G~~L~~~~Tp~dl~med 87 (105)
..+++|.|.-.-.....++|.|.-||+.|+-+.|++.++++..+.|+-| .+.|.-+.+..||+|.+
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3578888877655667899999999999999999999999999988876 56888899999999986
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.39 E-value=0.00039 Score=43.56 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=60.1
Q ss_pred CcEEEEEEe--cCCCEEEEEEecCcHHHHHHHHHHHHhCCCc-----ccEEEEECCeecCCCCCccccCCCCCCEEEE
Q 034043 23 AHINLKVKG--QDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-----NSIAFLFDGRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 23 ~~I~I~v~~--~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~-----~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv 93 (105)
.+|.|.+-. ..++.+-++|...-++++|.+...+.++++. ..+|..-.+..|.++++.+++.+.|||.|++
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 466777664 5677889999999999999999999999854 3466666788999999999999999999986
No 111
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.21 E-value=0.0043 Score=40.25 Aligned_cols=72 Identities=10% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE--CCeecC--CCCCccccCCCCCCEEEEE
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF--DGRRLR--GEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f--dG~~L~--~~~Tp~dl~medgD~Idv~ 94 (105)
...++|.|+..+|..+.-+...+++++.|++... ..+.....++|.- =.+.+. .+.|.++++|....++.|-
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~-~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHH-HHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-hcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 4689999999999998889999999999988655 4455556676653 244554 5899999999999888664
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.19 E-value=0.0052 Score=37.83 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=58.5
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE--CCeec---CCCCCccccCCCCCCEEEEEe
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF--DGRRL---RGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f--dG~~L---~~~~Tp~dl~medgD~Idv~~ 95 (105)
.+..+|.|+..+|..+.-+...+++++.|++.... .+.+...++|.- =.+.+ ..+.|.++++|...++|-|-.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45678888999999988899999999999986655 666677788773 35666 467899999999999887753
No 113
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.05 E-value=0.0049 Score=39.52 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=45.2
Q ss_pred CcEEEEEEecCCC-EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecC
Q 034043 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLR 75 (105)
Q Consensus 23 ~~I~I~v~~~~g~-~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~ 75 (105)
++..|+|-+.... .+++.|.+++++..+++..+++.|+++.+.+++|.|+.+.
T Consensus 11 ~rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 11 HRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp GEEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred hceeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 3566777776654 5689999999999999999999999999999999997654
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.97 E-value=0.0086 Score=38.87 Aligned_cols=75 Identities=9% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE--CCeecC---CCCCccccCCCCCCEEEEEee
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF--DGRRLR---GEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f--dG~~L~---~~~Tp~dl~medgD~Idv~~~ 96 (105)
....+|.|+..+|..+.-+...+++++.|++......+.+...+.|.- =-+.+. .+.|.++++|-...++.|...
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 346788888999999999999999999999988777676656666664 344454 467999999999988777643
No 115
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.74 E-value=0.016 Score=34.55 Aligned_cols=67 Identities=19% Similarity=0.385 Sum_probs=50.8
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.++|+|.++.+. ..+.+....++..|.+.. +++...+.+..||+.+..+. -+.+||.|+++.=-.||
T Consensus 4 ~m~i~vNg~~~~-~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDGK-KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTEE-EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccCc-eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 377777665432 356677778888887754 67778888999999887664 79999999999776665
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.48 E-value=0.052 Score=35.97 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE--CCeec---CCCCCccccCCCCCCEEEEE
Q 034043 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF--DGRRL---RGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f--dG~~L---~~~~Tp~dl~medgD~Idv~ 94 (105)
....++|.|+..+|..+..+...+++|+.|++..... +.....+.|+- =.+.| ..+.|.++++|-....+.|.
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 3468999999999999988999999999999877655 66556677763 35556 35789999999987766554
No 117
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.35 E-value=0.023 Score=33.96 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=43.8
Q ss_pred EEEecCcHHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 39 FRIKRSTQLKKLMNAYCDRQSVE--LNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 39 ~~ik~tt~l~kL~~~y~~~~g~~--~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+.+ ...++..|.+..+.+.++. ...+.+..||+.+...+| -+.|||+|.++.--.||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~----~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNT----PLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTC----CCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCc----CCCCCCEEEEECCCCCC
Confidence 445 5679999999998764443 267889999998765444 49999999999887776
No 118
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.05 E-value=0.034 Score=40.30 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=59.1
Q ss_pred cEEEEEEecCC--CEEEEEEecCcHHHHHHHHHHHHhCCCcc-cEEEEE-C----CeecC-CCCCccccCCCCCCEEEEE
Q 034043 24 HINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLF-D----GRRLR-GEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 24 ~I~I~v~~~~g--~~~~~~ik~tt~l~kL~~~y~~~~g~~~~-~~~F~f-d----G~~L~-~~~Tp~dl~medgD~Idv~ 94 (105)
.+.|++..... ..+.+.+.+.+++..|++.-|+.++++.+ .+|++. + -..|. .+.|.+++.+.+++.|-+=
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 45555554322 23457789999999999999999999987 699987 2 34665 4689999999999999888
Q ss_pred eeccCC
Q 034043 95 LHQTGG 100 (105)
Q Consensus 95 ~~q~GG 100 (105)
++..-|
T Consensus 219 ~r~~dg 224 (231)
T 3jyu_A 219 PQNEDG 224 (231)
T ss_dssp ECCTTS
T ss_pred EecCCC
Confidence 775554
No 119
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.80 E-value=0.029 Score=37.76 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=56.2
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcc-cEEEEE-----------------------------------
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLF----------------------------------- 69 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~-~~~F~f----------------------------------- 69 (105)
.|+|+-.||....+.|..+.+...++...|+++|+... .+.|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 57777789999999999999999999999999998633 222221
Q ss_pred ---CCeecCCCCCccccCCCCCCEEEEEee
Q 034043 70 ---DGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 70 ---dG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
....|.++.|.-+.++.++|++-+..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 136778889999999999999776543
No 120
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.79 E-value=0.027 Score=40.39 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=58.9
Q ss_pred cEEEEEEecCC--CEEEEEEecCcHHHHHHHHHHHHhCCCcc-cEEEEE-C----CeecCC-CCCccccCCCCCCEEEEE
Q 034043 24 HINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLF-D----GRRLRG-EQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 24 ~I~I~v~~~~g--~~~~~~ik~tt~l~kL~~~y~~~~g~~~~-~~~F~f-d----G~~L~~-~~Tp~dl~medgD~Idv~ 94 (105)
.+.|++..... ....+.+.+++++..|.+.-|+.++++.+ .+|++. + ...|.. +.|.+++.|.+++.|-+=
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 44555543321 23568889999999999999999999986 688875 2 335554 579999999999999998
Q ss_pred eeccCCC
Q 034043 95 LHQTGGA 101 (105)
Q Consensus 95 ~~q~GG~ 101 (105)
.+...|.
T Consensus 207 ~r~~dg~ 213 (217)
T 4a3p_A 207 QKNEDGT 213 (217)
T ss_dssp ECCCC-C
T ss_pred EecCCCC
Confidence 8877663
No 121
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=95.24 E-value=0.04 Score=34.55 Aligned_cols=68 Identities=22% Similarity=0.374 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCCEEEEEEecC-cHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRS-TQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~t-t~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..|+|.| +|+++ .+... .++..|.+.. +++...+.+..||+.+... .-.+.-|.|||.|+++.=-.||
T Consensus 19 ~~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 3556655 55543 45565 7888888754 6777888899999988653 2233459999999999865554
No 122
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.09 E-value=0.081 Score=33.06 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=41.9
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG 71 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG 71 (105)
..++|+|+.. -.+.++|.+..++..|.+..+++..++.+.+++.|.-
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4589999987 4889999999999999999999999998888888854
No 123
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=94.66 E-value=0.082 Score=30.80 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=43.5
Q ss_pred CCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 33 ~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+|+.+ .+....++..|.+.. +++...+.+..||+.+... .-.+.-+.|||.|+++.--.||
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 56544 445667888888765 5677888899999988642 1123358999999999866555
No 124
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=94.52 E-value=0.039 Score=33.31 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=45.7
Q ss_pred CCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 33 ~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
+|+... + ...++..|.+ .+++++..+-...||+-|... .-++.-|.|||.|+++.=-.||+-
T Consensus 6 NG~~~e--~-~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~~ 67 (73)
T 2kl0_A 6 NGEQRE--V-QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGLE 67 (73)
T ss_dssp TTEEEC--C-CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCCS
T ss_pred CCEEEE--c-CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCcc
Confidence 555444 4 5678887765 568888888899999877543 344557999999999988887753
No 125
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=94.30 E-value=0.5 Score=34.87 Aligned_cols=69 Identities=10% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcc-cEEEEE--CCe--ecCCCCCccccCCCCCCEE
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLF--DGR--RLRGEQTPDELEMEDGDEI 91 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~-~~~F~f--dG~--~L~~~~Tp~dl~medgD~I 91 (105)
...|.++|...|+ .+.+.|.++++-+.|++..|++.|+... -+-+.| +|. .|.++.+..+.....+...
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 5689999999998 7889999999999999999999998643 334444 555 4677777777554444433
No 126
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.24 E-value=0.053 Score=36.31 Aligned_cols=49 Identities=10% Similarity=0.278 Sum_probs=40.2
Q ss_pred CCcEEEEEEecC------C---------CEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEEC
Q 034043 22 SAHINLKVKGQD------G---------NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD 70 (105)
Q Consensus 22 ~~~I~I~v~~~~------g---------~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fd 70 (105)
--+++|+|.+.+ | ....|+|.++++|..++..+++.+|++++++|||+=
T Consensus 28 hlY~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 28 HLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp TTCCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred hceeEEEEecHHHHHhccCccCcCCccCCcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 357888887532 1 234799999999999999999999999999999974
No 127
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=94.23 E-value=0.15 Score=32.04 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=62.1
Q ss_pred CcEEEEEEecC--CCE-EEEEEecCcHHHHHHHHHHHHhCCCcccEEE-EECCeecCCCCCccccCCCCCCEEEEEe-ec
Q 034043 23 AHINLKVKGQD--GNE-VFFRIKRSTQLKKLMNAYCDRQSVELNSIAF-LFDGRRLRGEQTPDELEMEDGDEIDAML-HQ 97 (105)
Q Consensus 23 ~~I~I~v~~~~--g~~-~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F-~fdG~~L~~~~Tp~dl~medgD~Idv~~-~q 97 (105)
.+++.++.-.. ..+ ..++|-..+||..+.+.-|+++++++.+.-. +-||.=|.+.+|....-|+-|-.+.++. +.
T Consensus 9 ~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 9 SKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp CEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred ceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 46666665432 333 3688999999999999999999998876544 4489999999999999999999999984 45
Q ss_pred cCC
Q 034043 98 TGG 100 (105)
Q Consensus 98 ~GG 100 (105)
+|+
T Consensus 89 VG~ 91 (92)
T 1j0g_A 89 VGS 91 (92)
T ss_dssp SCC
T ss_pred ccC
Confidence 554
No 128
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.14 E-value=0.34 Score=29.43 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=46.4
Q ss_pred CEEEEEEecCcHHHHHHHHHHHHhC-CC----------cccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 35 NEVFFRIKRSTQLKKLMNAYCDRQS-VE----------LNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 35 ~~~~~~ik~tt~l~kL~~~y~~~~g-~~----------~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.+..+.+....++..|.+..+.++. +. ...+.+..||+.+.. +| -+.|||+|.++.--.||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~----~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-GE----ATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TS----BCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-Cc----ccCCCCEEEEECCCCCC
Confidence 4566777667899999999988764 11 124789999999875 33 49999999999887776
No 129
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.11 E-value=0.16 Score=30.63 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=47.1
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
|+|++.+. ....+.+...+++..|. ++.+++++.+.+..||+.+..++ +-+||.|+++.=-.||
T Consensus 3 v~Vkl~g~--~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 3 VTVEVVGE--ETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp EEEECSSS--SEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred EEEEEeCc--cceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 45555422 34567888888887775 56899999998888999887766 2359999998766665
No 130
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.92 E-value=0.2 Score=28.95 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=42.6
Q ss_pred CCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 33 ~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+|+++. + ...++..|.+.. +++...+.+..||+.+..+ .-.+.-+.|||.|+++.--.||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 555544 4 567888888765 5677888899999988643 1223468999999999866555
No 131
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=93.81 E-value=0.04 Score=33.73 Aligned_cols=63 Identities=24% Similarity=0.432 Sum_probs=46.5
Q ss_pred CCCEEEEEEe--cCcHHHHHHHHHHHHhCCC-cccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 33 DGNEVFFRIK--RSTQLKKLMNAYCDRQSVE-LNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 33 ~g~~~~~~ik--~tt~l~kL~~~y~~~~g~~-~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
+|+... +. ...++..|.+. ++++ ...+-...||+.|... .-.+.-|.|||.|+++.=-.||+.
T Consensus 6 NGe~~e--~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~~ 71 (78)
T 2k5p_A 6 NGKPST--VDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGKL 71 (78)
T ss_dssp TTEEEE--CSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSCC
T ss_pred CCEEEE--cCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCCc
Confidence 555444 44 55788888764 4777 7788899999877543 444567899999999988888865
No 132
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.41 E-value=0.2 Score=29.78 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=41.7
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhC-----CCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQS-----VELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g-----~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+..+. ....++..|.+..+.++. +....+.+..||+.+.. +.-+.+||+|.++.--.||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 33443 355688889888876542 23345789999998852 4468999999999877665
No 133
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.37 E-value=0.39 Score=31.72 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhC-CCcccEEEEE--CCeecC-CCCCccccCCCCCCEEE
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQS-VELNSIAFLF--DGRRLR-GEQTPDELEMEDGDEID 92 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g-~~~~~~~F~f--dG~~L~-~~~Tp~dl~medgD~Id 92 (105)
...+|.|+..||..+..+...++++..|++....... .....+.|+. =-+.+. .+.|.++++|.+.-+|.
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 4677888889999999999999999999997766532 3344555553 455564 47899999999865543
No 134
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.35 E-value=0.51 Score=29.35 Aligned_cols=61 Identities=20% Similarity=0.385 Sum_probs=43.6
Q ss_pred CEEEEEEecCcHHHHHHHHHHHHhC-C----------CcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 35 NEVFFRIKRSTQLKKLMNAYCDRQS-V----------ELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 35 ~~~~~~ik~tt~l~kL~~~y~~~~g-~----------~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
....+.+....++..|.+....+.. + ....+.+..||+.+.. +.-+.|||+|.++.--.||
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEESCC---
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEECCCCCC
Confidence 3556777777899999999887752 1 1256788899988853 4459999999998866665
No 135
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=93.31 E-value=0.17 Score=29.89 Aligned_cols=59 Identities=8% Similarity=0.183 Sum_probs=42.8
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhCCCcccE--EEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQSVELNSI--AFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~--~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
...+.+....++..|.+.....+. ....+ .+..||+.+..+ .-+.|||.|+++.--.||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 345555566799999998877643 11344 888999988753 469999999998766665
No 136
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=93.00 E-value=0.1 Score=33.49 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=41.3
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhC--CCcccEEEEEC--CeecC--------------CCCCccccCCCCCCEEEEE
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQS--VELNSIAFLFD--GRRLR--------------GEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g--~~~~~~~F~fd--G~~L~--------------~~~Tp~dl~medgD~Idv~ 94 (105)
.+.+.+.++++|+.+++..+++-. +...+++...+ ++.|. -+.+..+|+++||++|.|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346788999999999999999544 43334433321 33332 3566789999999999885
No 137
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=92.38 E-value=0.25 Score=39.85 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=56.6
Q ss_pred CCcEEEEEEe--cCCCEE----EEEEecCcHHHHHHHHHHHHhCCCcccEEEEEC------CeecC-CCCCcccc--CCC
Q 034043 22 SAHINLKVKG--QDGNEV----FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD------GRRLR-GEQTPDEL--EME 86 (105)
Q Consensus 22 ~~~I~I~v~~--~~g~~~----~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fd------G~~L~-~~~Tp~dl--~me 86 (105)
...|-|.++. .....+ ++.|.+++++..|....+++.|++.++=-.+|. -+.|. ++.|..+. +|.
T Consensus 128 ~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~ 207 (530)
T 2ylm_A 128 DHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM 207 (530)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC
T ss_pred CCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhccc
Confidence 3455555554 445555 578999999999999999999998875433444 44677 89999999 999
Q ss_pred CCCEEEEEee
Q 034043 87 DGDEIDAMLH 96 (105)
Q Consensus 87 dgD~Idv~~~ 96 (105)
+||+|-+-..
T Consensus 208 ~GdII~fQ~~ 217 (530)
T 2ylm_A 208 DGDIIVFQKD 217 (530)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEec
Confidence 9998766543
No 138
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.03 E-value=1.1 Score=28.19 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=39.7
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcc-cEEEEEC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLFD 70 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~-~~~F~fd 70 (105)
++.|+||+.-. |..+.+++.++.++..|.+..++.+++..+ .+++.|-
T Consensus 4 ~~~vkvK~~~~-gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 4 GSQVRVKAYYR-GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp SSCEEEEEESS-SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred CCeEEEEEEeC-CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 35688888764 677899999999999999999999998754 4888774
No 139
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=91.10 E-value=1.2 Score=28.80 Aligned_cols=77 Identities=14% Similarity=0.060 Sum_probs=51.0
Q ss_pred cEEEEEEec------CC--CEEEEEEec---CcHHHHHHHHHHHHhC-C----------CcccEEEEECCeec---CCCC
Q 034043 24 HINLKVKGQ------DG--NEVFFRIKR---STQLKKLMNAYCDRQS-V----------ELNSIAFLFDGRRL---RGEQ 78 (105)
Q Consensus 24 ~I~I~v~~~------~g--~~~~~~ik~---tt~l~kL~~~y~~~~g-~----------~~~~~~F~fdG~~L---~~~~ 78 (105)
.+.|+|+-. .+ +++.+.+.. ..++..|++..++++. + -...+.++.||+.+ ..-+
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gld 90 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELD 90 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTT
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcC
Confidence 466666642 22 244566662 2589999999988862 1 12346677788754 3444
Q ss_pred CccccCCCCCCEEEEEeeccCCCCCC
Q 034043 79 TPDELEMEDGDEIDAMLHQTGGALGS 104 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~q~GG~~~~ 104 (105)
| -++|||+|.++.-.-||+.-|
T Consensus 91 t----~L~dGDeV~iip~vaGG~~~~ 112 (114)
T 1wgk_A 91 Y----QLQDQDSILFISTLHGGSGPS 112 (114)
T ss_dssp C----BCCSSEEEEEEECSCCCCCSC
T ss_pred c----CCCCCCEEEEeCCCCCCCCcC
Confidence 4 489999999999999998643
No 140
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=90.80 E-value=1.2 Score=26.67 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=42.2
Q ss_pred EEEecCcHHHHHHHHHHHHhC------C-----CcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 39 FRIKRSTQLKKLMNAYCDRQS------V-----ELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 39 ~~ik~tt~l~kL~~~y~~~~g------~-----~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+.+....++..|.+..+.++. + -...+.+..||+.+... .-.+.-+.+||+|.++.--.||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 345555799999998887752 1 01467899999988632 1223348999999998876665
No 141
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=90.46 E-value=1.9 Score=26.80 Aligned_cols=60 Identities=2% Similarity=0.043 Sum_probs=49.1
Q ss_pred EEEEEecCcHHHHHHHHHHHHh-CC-----CcccEEEEECC--eecCCCCCccccCCCCCCEEEEEee
Q 034043 37 VFFRIKRSTQLKKLMNAYCDRQ-SV-----ELNSIAFLFDG--RRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 37 ~~~~ik~tt~l~kL~~~y~~~~-g~-----~~~~~~F~fdG--~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.-+-|...++|..+-++.+-.- |. +-..++..++| +.+..+.|.++-+|..-|+|||+.+
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3467788889999998887543 32 22368999999 9999999999999999999999864
No 142
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=90.21 E-value=1 Score=27.47 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred EEEecCcHHHHHHHHHHHHhCC------C-------cccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 39 FRIKRSTQLKKLMNAYCDRQSV------E-------LNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 39 ~~ik~tt~l~kL~~~y~~~~g~------~-------~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
+.. ...++..|.+..++++.- . ...+.+..||+.+...+- .+.-+.+||+|.++.--.||
T Consensus 21 ~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 21 VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 443 457899999999887641 1 125889999998875221 22348999999999888776
No 143
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=90.06 E-value=1.3 Score=28.05 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCcEEEEEEecCCC---EEEEEEecCcHHHHHHHHHH--HHh-CCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEe
Q 034043 22 SAHINLKVKGQDGN---EVFFRIKRSTQLKKLMNAYC--DRQ-SVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 22 ~~~I~I~v~~~~g~---~~~~~ik~tt~l~kL~~~y~--~~~-g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~ 95 (105)
-+.|.|.|...--. .+.+.+...+++..+.++.- ..+ .++.+.+.+-.+|+.+. .+--|+|||.|+++.
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 46778877764322 34678888899999998874 233 56667788888998886 344499999999985
Q ss_pred e
Q 034043 96 H 96 (105)
Q Consensus 96 ~ 96 (105)
-
T Consensus 85 p 85 (97)
T 2hj1_A 85 P 85 (97)
T ss_dssp C
T ss_pred c
Confidence 3
No 144
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=89.65 E-value=2.8 Score=30.33 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=47.7
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcc-cEEEEE---CCe--ecCCCCCccccCCCCCC
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLF---DGR--RLRGEQTPDELEMEDGD 89 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~-~~~F~f---dG~--~L~~~~Tp~dl~medgD 89 (105)
.|.++|...|+ .+.+.|.++++-+.|++..|++.|+... -+-+.| +|. .|.++.+..+.+...+.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~ 71 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES 71 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCS
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCC
Confidence 37888888888 6789999999999999999999998643 344444 343 46677776665444333
No 145
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=89.28 E-value=2.2 Score=26.39 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=42.7
Q ss_pred CEEEEEEe--cCcHHHHHHHHHHHHhC-CC------------cccEEEEECCeecC---CCCCccccCCCCCCEEEEEee
Q 034043 35 NEVFFRIK--RSTQLKKLMNAYCDRQS-VE------------LNSIAFLFDGRRLR---GEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 35 ~~~~~~ik--~tt~l~kL~~~y~~~~g-~~------------~~~~~F~fdG~~L~---~~~Tp~dl~medgD~Idv~~~ 96 (105)
.+..+.+. ...++..|.+..++++. .. ...+.+..||+.+. ..+| -++|||+|.++.-
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~----~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDY----ILEDGDIISFTST 95 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGC----BCCTTCEEEEEEC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCc----CcCCCCEEEEECC
Confidence 34555555 56799999999888773 11 12345888888654 3344 4899999999987
Q ss_pred ccCC
Q 034043 97 QTGG 100 (105)
Q Consensus 97 q~GG 100 (105)
-.||
T Consensus 96 v~GG 99 (99)
T 2qjl_A 96 LHGG 99 (99)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 7776
No 146
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=89.21 E-value=0.49 Score=38.12 Aligned_cols=34 Identities=9% Similarity=0.245 Sum_probs=31.8
Q ss_pred EEEEEecCcHHHHHHHHHHHHhCCCcccEEEEEC
Q 034043 37 VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD 70 (105)
Q Consensus 37 ~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fd 70 (105)
..|+|.+++++..|++..++.+|++++++|||.=
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 71 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEE
Confidence 4799999999999999999999999999999864
No 147
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=88.83 E-value=0.28 Score=29.40 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=39.3
Q ss_pred EEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 40 RIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 40 ~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.+....++..|.+. .+++...+.+..||+.+..+ .-+.+||+|+++.=-.||
T Consensus 26 ~~~~~~Tv~dLl~~----L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 26 EWREGMKVRDILRA----VGFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCSSCCHHHHHHT----TTCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred ECCCCCcHHHHHHH----hCCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 44556678777664 35677778899999998754 569999999998776665
No 148
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=88.42 E-value=1.6 Score=27.41 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=42.8
Q ss_pred CCCcEEEEEEecCCCE----EEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeec-CCCCCcccc
Q 034043 21 QSAHINLKVKGQDGNE----VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL-RGEQTPDEL 83 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~----~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L-~~~~Tp~dl 83 (105)
..++|+|+++.....+ ..|.|..+.++..++...+++.++ +.+=++.+...+ .+++|..+|
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHH
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHH
Confidence 3568999988743322 379999999999999999999998 566444466433 446676655
No 149
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=88.20 E-value=0.89 Score=28.83 Aligned_cols=60 Identities=10% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCcEEEEEEecCCCE----EEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECC-eecCCCCCcccc
Q 034043 22 SAHINLKVKGQDGNE----VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG-RRLRGEQTPDEL 83 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~----~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG-~~L~~~~Tp~dl 83 (105)
.++|.|+++.....+ ..|.|..+.++..++...+++..++ .+=++.+. ....+++|..+|
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 568999988754322 3799999999999999999999987 44443344 233556777766
No 150
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=87.21 E-value=3.9 Score=30.78 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=55.4
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCC----CcccEEEEE------CCeecCCCCCccccCCCCCCEEEEE
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV----ELNSIAFLF------DGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~----~~~~~~F~f------dG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
+.|+|.-. +....+...+++++..+....+++.+- +.+..-++. .|..|..+.|.+.+++.+|+.|+..
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 45565554 445578999999999999999888863 567776666 4678999999999999999998766
Q ss_pred e
Q 034043 95 L 95 (105)
Q Consensus 95 ~ 95 (105)
.
T Consensus 83 ~ 83 (371)
T 3ivf_A 83 K 83 (371)
T ss_dssp E
T ss_pred C
Confidence 3
No 151
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=86.60 E-value=1.2 Score=27.92 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=44.7
Q ss_pred CcEEEEEEecCCC----EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-CCeec-CCCCCcccc
Q 034043 23 AHINLKVKGQDGN----EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRL-RGEQTPDEL 83 (105)
Q Consensus 23 ~~I~I~v~~~~g~----~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L-~~~~Tp~dl 83 (105)
.+|+|+++..... ...|.|..+.++..++...+++..+++++--|+| +...+ .+++|..+|
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 4788888864332 2379999999999999999999999877655666 55433 446676654
No 152
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=86.27 E-value=4.5 Score=26.26 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=35.5
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEE
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 68 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~ 68 (105)
.|++.-+++..-.+.|++-.+++.-..+-.++.++.++.+..+
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 3555567877778999999999999999999999988876544
No 153
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=85.90 E-value=5.9 Score=32.16 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=49.5
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCc-ccEEEEE-C--C--eecCCCCCccccCCCCCCEE
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF-D--G--RRLRGEQTPDELEMEDGDEI 91 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~-~~~~F~f-d--G--~~L~~~~Tp~dl~medgD~I 91 (105)
..|.++|...|| .+.|.|.++++...|++..|+.+|+.. .-+-|.| + | ..|.++.+..+.+...+...
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~ 76 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPL 76 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCe
Confidence 468899999998 678999999999999999999999853 3345544 2 3 25666666666544444433
No 154
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=85.88 E-value=8.7 Score=28.81 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=39.9
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCc-ccEEEEE
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~-~~~~F~f 69 (105)
..+.++|.-.||....+.|..+++-+.|++..|++.|+.. +-+-+.+
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 4688889999999999999999999999999999999853 3455554
No 155
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=84.93 E-value=3.2 Score=23.70 Aligned_cols=63 Identities=10% Similarity=0.145 Sum_probs=39.7
Q ss_pred EEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeecc
Q 034043 27 LKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 27 I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~ 98 (105)
|+|..++|... .+...+++..|...+.... ....+-...||+.+..+ .-+++||.|+++.--.
T Consensus 3 i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 3 VMVFTPKGEIK--RLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEEECTTCCEE--EECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEECCC
T ss_pred EEEEcCCCCEE--EcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEECCC
Confidence 45555677754 4556677777776653222 22345567799877664 4567899999886543
No 156
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=84.48 E-value=2.9 Score=25.93 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHHHhC-CC---------cccE-------EEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 44 STQLKKLMNAYCDRQS-VE---------LNSI-------AFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 44 tt~l~kL~~~y~~~~g-~~---------~~~~-------~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..++..|.+..+.++. +. ...+ .+..||+.+...+ -.+.-+.|||+|.++.--.||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 5799999999887752 11 1124 7888998775322 223358999999998876665
No 157
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=84.34 E-value=5.6 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=37.9
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCe
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~ 72 (105)
..|+||+-.++ .-+.++|..+.+|+.|.++.+++..+. +.+.|.|.++
T Consensus 11 ~~~KVK~yy~D-DIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYKD-DIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBTT-CCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred CceEEEEEecC-cEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 46788876654 568899999999999999999999984 4555666655
No 158
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=83.83 E-value=4.8 Score=25.04 Aligned_cols=60 Identities=7% Similarity=0.065 Sum_probs=49.8
Q ss_pred EEEEEecCcHHHHHHHHHHHHh-CC----CcccEEEEECCee--cCCCCCccccCCCCCCEEEEEee
Q 034043 37 VFFRIKRSTQLKKLMNAYCDRQ-SV----ELNSIAFLFDGRR--LRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 37 ~~~~ik~tt~l~kL~~~y~~~~-g~----~~~~~~F~fdG~~--L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.-+-|...++|..+-++.+... |. .+..++....|.. +..+.|.++.++..-|+|||+.+
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~~ 83 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFE 83 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEEC
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEEc
Confidence 3577888999999998887654 32 1247999999998 99999999999999999999863
No 159
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=79.83 E-value=8.8 Score=24.00 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=50.4
Q ss_pred EEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEeec
Q 034043 40 RIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 40 ~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q 97 (105)
.|.=..||..|.+....+.+++.+...|+.....|.+..+..+-.++-.-.+.+-++.
T Consensus 8 hmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 8 AIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 4555689999999999999999999999998888999999999999988877666543
No 160
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=78.36 E-value=3.2 Score=30.47 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=36.3
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCc
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL 62 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~ 62 (105)
..|.++|.-.|+....+.|.++++-+.|++..|++.|+..
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 4788899999999999999999999999999999999864
No 161
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.37 E-value=8.8 Score=24.64 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=58.1
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCccc---EEEEECCeec--CCCCCccccCCCCCCEEEEEee
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS---IAFLFDGRRL--RGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~---~~F~fdG~~L--~~~~Tp~dl~medgD~Idv~~~ 96 (105)
+..|..+|-..|...+.++++.+.+-+.|+...+++.+...+. +...+.|+++ ++++....-.|.-+..|-|..+
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3467788888888888899999999999999999999975433 4567899977 6777776666666666666544
No 162
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=76.84 E-value=5 Score=27.54 Aligned_cols=61 Identities=13% Similarity=0.303 Sum_probs=43.0
Q ss_pred EEecCcHHHHHHHHHHHHhC-CC---------cccEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCCCC
Q 034043 40 RIKRSTQLKKLMNAYCDRQS-VE---------LNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 40 ~ik~tt~l~kL~~~y~~~~g-~~---------~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
.+.. .++..|.+.....+. +. ...+.+..||+.+...+- .+.-+.+||+|.++.--.||+.
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEEE
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccccc
Confidence 3444 789999988877752 11 245788899998865321 2335999999999988888753
No 163
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=75.71 E-value=14 Score=24.49 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=50.8
Q ss_pred CcEEEEEEecCCC-------EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEE-ECCeec-CCCCCccccC----CCCCC
Q 034043 23 AHINLKVKGQDGN-------EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL-FDGRRL-RGEQTPDELE----MEDGD 89 (105)
Q Consensus 23 ~~I~I~v~~~~g~-------~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~-fdG~~L-~~~~Tp~dl~----medgD 89 (105)
++|-|.|.-..+. ...|.|..+.++..++....+++.+++++--|+ |-+..+ ..+.|..+|- =+||-
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGf 113 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGF 113 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSC
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCE
Confidence 5777777533222 237899999999999999999999998887777 765555 5566777661 15665
Q ss_pred EEEEE
Q 034043 90 EIDAM 94 (105)
Q Consensus 90 ~Idv~ 94 (105)
..-.+
T Consensus 114 Lyv~Y 118 (130)
T 2zjd_A 114 LYMVY 118 (130)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
No 164
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=75.35 E-value=13 Score=23.58 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=45.9
Q ss_pred CCcEEEEEEecCCCEEEEEEecCc-HHHHHHHHHHHHhC--------------CC----ccc-EEEEECCeecCCCCCcc
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRST-QLKKLMNAYCDRQS--------------VE----LNS-IAFLFDGRRLRGEQTPD 81 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt-~l~kL~~~y~~~~g--------------~~----~~~-~~F~fdG~~L~~~~Tp~ 81 (105)
...|+|.|...++....|.|.+.- +|..++++-..... +. -+. -.|.-+|+.+. .-+.
T Consensus 6 ~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~--~Ga~ 83 (101)
T 3u7z_A 6 EKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN--TSAD 83 (101)
T ss_dssp CEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC--SCGG
T ss_pred eeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh--hchh
Confidence 458999999998887777777332 45555433211110 00 011 13555777765 4788
Q ss_pred ccCCCCCCEEEEEee
Q 034043 82 ELEMEDGDEIDAMLH 96 (105)
Q Consensus 82 dl~medgD~Idv~~~ 96 (105)
++-++|||.|.+...
T Consensus 84 ~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 84 QTPVSDGDAFELTLK 98 (101)
T ss_dssp GCBCCTTCEEEEEEE
T ss_pred heEecCCCEEEEEEe
Confidence 999999999998764
No 165
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=74.53 E-value=14 Score=23.56 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=42.7
Q ss_pred CCCcEEEEEEecCCCEEEEEEe--cCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEE
Q 034043 21 QSAHINLKVKGQDGNEVFFRIK--RSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik--~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
+++.|.|+++.+++..+--.|. +.-.|..|.++..+...- .+.|.=+++=|+||.|.|.
T Consensus 11 ~a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~---------------aT~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 11 ENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPE---------------ATTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp --CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTT---------------SCCSEEEEECTTSCEEEEC
T ss_pred ccCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcc---------------ceeeeeeeccccCCeeEEc
Confidence 5788999999999888876777 677899999988776542 2345555666888888875
No 166
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=73.83 E-value=5.3 Score=25.45 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=31.1
Q ss_pred cEEEEEEecC-------CCEEEEEEecCcHHHHHHHHHHHHhCCC
Q 034043 24 HINLKVKGQD-------GNEVFFRIKRSTQLKKLMNAYCDRQSVE 61 (105)
Q Consensus 24 ~I~I~v~~~~-------g~~~~~~ik~tt~l~kL~~~y~~~~g~~ 61 (105)
.|.|||...+ +..+.+.|.++.+|..|+++..+++++.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4888888653 3346889999999999999999999864
No 167
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=71.89 E-value=12 Score=24.39 Aligned_cols=61 Identities=7% Similarity=0.107 Sum_probs=42.2
Q ss_pred CcEEEEEEecCCC------EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCcccc
Q 034043 23 AHINLKVKGQDGN------EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEL 83 (105)
Q Consensus 23 ~~I~I~v~~~~g~------~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L~~~~Tp~dl 83 (105)
++|-|.|.-..+. ...|.|..+.++..++....+++.+++++--|+| ++.....+.|..+|
T Consensus 29 ~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 29 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp SEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred CceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 4566665543322 2368899999999999999999999887766666 65433445555554
No 168
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=71.87 E-value=11 Score=24.59 Aligned_cols=61 Identities=10% Similarity=0.207 Sum_probs=43.2
Q ss_pred CcEEEEEEecCCC------EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCcccc
Q 034043 23 AHINLKVKGQDGN------EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEL 83 (105)
Q Consensus 23 ~~I~I~v~~~~g~------~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L~~~~Tp~dl 83 (105)
++|-|.|.-..+. ...|.|..+.++..++....+++.+++++--|+| ++.....+.|..+|
T Consensus 30 ~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 30 DRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp TEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 4566655543322 1368999999999999999999999887755555 77655566666655
No 169
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=68.81 E-value=16 Score=21.85 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=39.3
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.|.|..++|..+. +....+...+..+..... ....+--.++|+.+..+ .-|++||+|+++..
T Consensus 7 ~i~v~tP~G~~~~--lp~GaT~~D~A~~Ih~~l--g~~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVIS--LPIGSTVIDFAYAIHSAV--GNRMIGAKVDGRIVPID-----YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEEE--EETTCBHHHHHHHHCHHH--HHTEEEEEETTEEECTT-----CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEEE--ecCCCCHHHHHHHhhhhh--hcceEEEEECCEEcCCC-----cccCCCCEEEEEcc
Confidence 4666778888654 455556555543332222 23455567799887764 34899999998764
No 170
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=67.64 E-value=21 Score=23.01 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=43.9
Q ss_pred CcEEEEEEecCCC------EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCcccc
Q 034043 23 AHINLKVKGQDGN------EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEL 83 (105)
Q Consensus 23 ~~I~I~v~~~~g~------~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L~~~~Tp~dl 83 (105)
++|-|.|.-..+. ...|.|..+.++..++....+++.+++++--|+| ++.....+.|..+|
T Consensus 27 ~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 27 DRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 5777777754332 2368899999999999999999999877655666 55444456666666
No 171
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=66.69 E-value=22 Score=28.16 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=40.7
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCc--ccEEEEE
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL--NSIAFLF 69 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~--~~~~F~f 69 (105)
...+.++|.-.||....+.|..+++-+.|++..|++.|+.. +-+-+.+
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45788999999999999999999999999999999999964 3455544
No 172
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=65.90 E-value=23 Score=29.17 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=40.5
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCc-ccEEEEE
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~-~~~~F~f 69 (105)
...|.++|...||....|.|...++-+.|++..|++.|+.. .-+-+.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35789999999999999999999999999999999999853 3344444
No 173
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=65.87 E-value=22 Score=22.51 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=43.6
Q ss_pred CcEEEEEEecCCC------EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCcccc
Q 034043 23 AHINLKVKGQDGN------EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEL 83 (105)
Q Consensus 23 ~~I~I~v~~~~g~------~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L~~~~Tp~dl 83 (105)
++|-|.|.-..+. ...|.|..+.++..++....++..+++++--|+| ++.....+.|..+|
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 5777777755322 1368999999999999999999999877655666 55444556666665
No 174
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.76 E-value=21 Score=22.13 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=46.9
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEE--ECC--eecCCCCCccccCCCCCCEEEEEe
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL--FDG--RRLRGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~--fdG--~~L~~~~Tp~dl~medgD~Idv~~ 95 (105)
.|++.-+++..-.+.|++-.+++.-..+-.++.++.++.+..+ -+| .+|. .+|-.. .-.+++|.|.+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~Id-WdtDi~--~L~~eEL~Ve~ 79 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTA-WDTAIA--PLDGEELIVEV 79 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEEC-SSSBST--TCSSCEEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccc-hhHhhh--hccCcEEEEEE
Confidence 5666668888888999999999999999999999998877555 256 3343 333222 12366665543
No 175
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=65.39 E-value=23 Score=22.48 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=37.2
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCc----ccEEEEECCeecCCCCCcccc
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL----NSIAFLFDGRRLRGEQTPDEL 83 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~----~~~~F~fdG~~L~~~~Tp~dl 83 (105)
-.+|.+... ...+=|- ...|+.|..+-|++++++. -.+.+.-||-.|...+=-..|
T Consensus 20 PfkV~~~~~-r~k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL 79 (100)
T 1f2r_I 20 PCLLRRNHS-RDQHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79 (100)
T ss_dssp EEEEEETTE-EEEEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS
T ss_pred CEEEeeCCC-ccEEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC
Confidence 455553322 2355554 4789999999999999954 355666689999765544443
No 176
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=64.84 E-value=2.5 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=17.0
Q ss_pred CCCccccCCCCCCEEEEEee
Q 034043 77 EQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~ 96 (105)
...+.+|.++.||+|.|..+
T Consensus 21 ~~~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 21 GAFGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp GGCSCBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCcCCCCEEEEEeC
Confidence 34567999999999999987
No 177
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=64.48 E-value=15 Score=24.23 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=42.2
Q ss_pred CcEEEEEEecCCC------EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCcccc
Q 034043 23 AHINLKVKGQDGN------EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEL 83 (105)
Q Consensus 23 ~~I~I~v~~~~g~------~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L~~~~Tp~dl 83 (105)
++|-|.|.-..+. ...|.|..+.++..++....+++.+++++--|+| ++.....+.|..+|
T Consensus 35 ~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 35 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 3555555443322 2368899999999999999999999887766666 55433455666555
No 178
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=61.74 E-value=7.5 Score=21.39 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~~~ 37 (62)
T 2fpe_A 15 RHEDELELEVDDPLLVELQAEDY 37 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEECTTS
T ss_pred cCcCcCcCCCCCEEEEEEecCCC
Confidence 56789999999999997655444
No 179
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=60.60 E-value=7.9 Score=22.17 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=20.0
Q ss_pred CCCccccCCCCCCEEEEEeeccCCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
...+.+|.++.||+|.|.-+.-.|+
T Consensus 17 a~~~~ELs~~~Gd~i~v~~~~~~gW 41 (65)
T 2lj0_A 17 PQNDDELELRDGDIVDVMEKCDDGW 41 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEEECTTSE
T ss_pred CCCcCCcCCCCCCEEEEeEeCCCCE
Confidence 3578899999999999987665554
No 180
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=60.43 E-value=20 Score=23.49 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=54.5
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcc---------cEEEEECCeec--CCCCCccccCCCCCCE
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN---------SIAFLFDGRRL--RGEQTPDELEMEDGDE 90 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~---------~~~F~fdG~~L--~~~~Tp~dl~medgD~ 90 (105)
+..|..+|-..|...+.++++.+.+-+.|+...+++.+...+ -+...+.|+++ ++++....--|.-+..
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgR 86 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSH 86 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEE
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccce
Confidence 347888888888888889999999999999999999987432 35678899976 5677655444444444
Q ss_pred EEEE
Q 034043 91 IDAM 94 (105)
Q Consensus 91 Idv~ 94 (105)
|-|.
T Consensus 87 Lfvc 90 (120)
T 2dhz_A 87 LFAC 90 (120)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 181
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=59.73 E-value=9 Score=20.60 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.4
Q ss_pred CCCccccCCCCCCEEEEEeeccCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
...+.+|.++.||+|.|..+.-.|
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~~~~g 35 (58)
T 1zuy_A 12 SGSPSELPLKKGDVIYITREEPSG 35 (58)
T ss_dssp CSCTTBCCBCTTCEEEEEEECTTS
T ss_pred CCCCCcCCCCCCCEEEEEEecCCC
Confidence 357889999999999998876544
No 182
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=59.28 E-value=28 Score=21.98 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=36.4
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE 61 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~ 61 (105)
..++.|+|-..||....+.|.++.+-..+.+..+++..+.
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 4578999999999999999999999999999999999875
No 183
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=59.13 E-value=8.4 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.4
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~gW 41 (65)
T 2j05_A 18 PDTDEISFLKGDMFIVHNELEDGW 41 (65)
T ss_dssp TTSSBCCBCTTCEEEEEEECTTSE
T ss_pred CCCCcCcCCCCCEEEEeEecCCCE
Confidence 567899999999999987755543
No 184
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=58.71 E-value=20 Score=23.00 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=43.3
Q ss_pred CcEEEEEEe-cCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCee
Q 034043 23 AHINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR 73 (105)
Q Consensus 23 ~~I~I~v~~-~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~ 73 (105)
++|.+++.- ++++.+.++.+++-++..+..-.-.++|+..+++.....|+.
T Consensus 15 ~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~ 66 (104)
T 1wfy_A 15 NRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEK 66 (104)
T ss_dssp SCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCS
T ss_pred eeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCc
Confidence 478888866 788899999999999999999999999998888777665543
No 185
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=58.17 E-value=9.1 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=19.2
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-+|+
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~~~~W 35 (58)
T 1jo8_A 12 AEDNELTFVENDKIINIEFVDDDW 35 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSSE
T ss_pred CCCCCcccCCCCEEEEEEecCCCc
Confidence 457799999999999988755553
No 186
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=57.54 E-value=9.8 Score=21.90 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.6
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
+.+.+|.++.||+|.|..+.-.|+
T Consensus 23 ~~~~eLs~~~Gd~i~v~~~~~~gW 46 (73)
T 2ebp_A 23 YDTDSLKLKKGDIIDIISKPPMGT 46 (73)
T ss_dssp TCCSBCCBCSSCEEEEEECCSSSC
T ss_pred CCCCccCCCCCCEEEEEEeCCCCe
Confidence 367899999999999998765554
No 187
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=57.28 E-value=12 Score=21.02 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~W 36 (65)
T 2nwm_A 13 QSPKELTLQKGDIVYIHKEVDKNW 36 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECCTTTC
T ss_pred CCcCccCCcCCCEEEEEEecCCCE
Confidence 467899999999999987655554
No 188
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=56.83 E-value=11 Score=23.74 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=31.5
Q ss_pred EEE-ecCcHHHHHHHHHHHHhCCCcccEEEEE-CC--eecCCCCCccccCCCCCCEEEEEee
Q 034043 39 FRI-KRSTQLKKLMNAYCDRQSVELNSIAFLF-DG--RRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 39 ~~i-k~tt~l~kL~~~y~~~~g~~~~~~~F~f-dG--~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
+-+ ++..+...+-.+....++ +++++-. =| -+..+..-+.+..|+|+|+|+++.+
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~---~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLI---KEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCT---TTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHH---hhccEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 556 666777665444444433 3444422 11 1223334456677889999999977
No 189
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=56.52 E-value=35 Score=21.54 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=48.1
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEE--ECC--eecCCCCCccccCCCCCCEEEEE
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL--FDG--RRLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~--fdG--~~L~~~~Tp~dl~medgD~Idv~ 94 (105)
.|++.-++++.-.+.|++-.+++.-..+-.++.++.++.+..+ -+| .+|.=+.-...| + +++|.|-
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L--~-~eEL~Ve 88 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWL--T-GEELHVE 88 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEECTTSBGGGG--T-TCEEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccccchhHhhhhc--c-CcEEEEE
Confidence 6677778887778999999999999999999999998877555 356 445433333333 2 6666554
No 190
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=56.36 E-value=14 Score=20.20 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=19.4
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-.|+
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~~W 40 (62)
T 1k4u_S 17 TQPEDLEFQEGDIILVLSKVNEEW 40 (62)
T ss_dssp CSSSBCCBCSSCEEEEEEESSSSC
T ss_pred CCCCCccCCCCCEEEEEEeCCCCE
Confidence 457789999999999998765554
No 191
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=55.86 E-value=9.8 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 1zx6_A 14 QQDGDLGLKPGDKVQLLEKLSPE 36 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCCCCccCCCCCEEEEEEecCCC
Confidence 46789999999999998775544
No 192
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=55.46 E-value=11 Score=20.41 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=19.2
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-+|+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~W 36 (58)
T 2bz8_A 13 QHDDELTISVGEIITNIRKEDGGW 36 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCTTTE
T ss_pred CCcCEeeECCCCEEEEEEeCCCCE
Confidence 467899999999999988755543
No 193
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=54.76 E-value=12 Score=20.32 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~~~~W 39 (59)
T 2g6f_X 16 TNEDELSFSKGDVIHVTRVEEGGW 39 (59)
T ss_dssp SSTTBCCBCTTCEEEEEEECTTSE
T ss_pred CCcCCcCCCCCCEEEEEEecCCCE
Confidence 457899999999999987765543
No 194
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=54.34 E-value=22 Score=29.37 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=42.3
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhC--CCcccE--------EEEECCe--------ecCCCCCccccCCCCCCEEEEE
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQS--VELNSI--------AFLFDGR--------RLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g--~~~~~~--------~F~fdG~--------~L~~~~Tp~dl~medgD~Idv~ 94 (105)
...+.+..+.+|+.+.+.+|++.. +....+ +++|.-. +-+-+.|..+|++++|++|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 456788888899999999999754 433333 4566532 1234678999999999998875
No 195
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=54.06 E-value=12 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.7
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 19 ~~~~eLsf~~Gd~i~v~~~~~~~ 41 (68)
T 1tg0_A 19 DYEDDLNFEKDQEIIVTSVEDAE 41 (68)
T ss_dssp SCTTBCCBCTTCEEEEEEECSSS
T ss_pred CCcCCCCCCCCCEEEEEEecCCC
Confidence 56789999999999998765544
No 196
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=53.46 E-value=12 Score=20.43 Aligned_cols=24 Identities=33% Similarity=0.417 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+...|+
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~~~W 38 (61)
T 1y0m_A 15 QREDELTFTKSAIIQNVEKQDGGW 38 (61)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSSE
T ss_pred CCCCCcCCcCCCEEEEEEecCCCE
Confidence 567799999999999988755443
No 197
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=53.44 E-value=10 Score=21.43 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~gW 41 (71)
T 2fpf_A 18 RHEDELELEVDDPLLVELQAEDYW 41 (71)
T ss_dssp SSTTBCCBCTTCEEEEEEECTTSE
T ss_pred cCCCcccCcCCcEEEEeEecCCCE
Confidence 457789999999999986655543
No 198
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=53.35 E-value=12 Score=20.12 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.5
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (58)
T 1uti_A 13 LEEDELGFRSGEVVEVLDSSNPS 35 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCcCCCCCCCCCEEEEEEECCCC
Confidence 45779999999999998765444
No 199
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=52.87 E-value=10 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=18.5
Q ss_pred CccccCCCCCCEEEEEeeccCCC
Q 034043 79 TPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
++.+|.+..||+|.|..+.-+|+
T Consensus 2 ~~~eLs~~~Gd~i~v~~~~~~~W 24 (63)
T 1tuc_A 2 GPREVTMKKGDILTLLNSTNKDW 24 (63)
T ss_dssp CCCCCCBCTTCEEEEEECCSSSE
T ss_pred CccccCCCCCCEEEEEEecCCCE
Confidence 57889999999999987755543
No 200
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=52.59 E-value=14 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.0
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~~~~W 39 (60)
T 1w70_A 16 NSKLELNFKAGDVIFLLSRINKDW 39 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEECSSSE
T ss_pred CCCCCccCCCCCEEEEEEeCCCCe
Confidence 456789999999999988765543
No 201
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=52.49 E-value=13 Score=20.46 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~~W 40 (62)
T 1uj0_A 17 VEDNELTFKHGELITVLDDSDANW 40 (62)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSSE
T ss_pred CCcCCcCCCCCCEEEEEEeCCCCE
Confidence 456789999999999988755443
No 202
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}
Probab=52.05 E-value=48 Score=21.85 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=45.5
Q ss_pred cEEEEEEecCCC---EEEEEEec-------------------CcHHHHHHHHHHHHhCCC-----------cccEEEEEC
Q 034043 24 HINLKVKGQDGN---EVFFRIKR-------------------STQLKKLMNAYCDRQSVE-----------LNSIAFLFD 70 (105)
Q Consensus 24 ~I~I~v~~~~g~---~~~~~ik~-------------------tt~l~kL~~~y~~~~g~~-----------~~~~~F~fd 70 (105)
...|.|+.. +. ..+|+|++ ..++..|.+.|....... ...++-+||
T Consensus 48 ~y~LSv~~~-~~~~~v~H~~I~~~~~~~~g~~~~~~~~~~~~F~sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~alyd 126 (174)
T 3qwx_X 48 EYSLTVREA-DEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFK 126 (174)
T ss_dssp CEEEEEECC-SSSSCEEEEEEEECCCCTTSSSCCCEEETTEEESSHHHHHHHTTSSCSSSCCCCEECCCCCSEEEEESSC
T ss_pred CEEEEEEEC-CCCCceEEEEEEeccCCCCCcccceEEECCeecCcHHHHhhhhhcCcccccccccccccccccEEEEecC
Confidence 456666653 33 55777754 148889998887654321 012333333
Q ss_pred CeecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 71 GRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 71 G~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
-. ...+.+|.+..||+|.|.-+.-.|+
T Consensus 127 y~----~~~~~eLsf~~Gd~i~v~~~~~~~W 153 (174)
T 3qwx_X 127 FT----GERETDLPFEQGERLEILSKTNQDW 153 (174)
T ss_dssp BC----CSSTTBCCBCTTCEEEEEECCSSSE
T ss_pred cc----cCCCCccccccCCEEEEEEccCCCe
Confidence 22 3467899999999999987654443
No 203
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=51.85 E-value=13 Score=20.49 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.2
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-+|+
T Consensus 33 ~~~~eLsf~~Gd~i~v~~~~~~~W 56 (62)
T 1g2b_A 33 KSPREVTMKKGDILTLLNSTNKDW 56 (62)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSSE
T ss_pred CCCCccCCCCCCEEEEEEecCCCE
Confidence 457789999999999998765543
No 204
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=51.77 E-value=13 Score=19.89 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=18.5
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 2vwf_A 14 QEDGELGFRRGDFIHVMDNSDPN 36 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCcCCcCCCCCCEEEEEEcCCCC
Confidence 46679999999999998775444
No 205
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.48 E-value=14 Score=20.67 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (68)
T 2dmo_A 19 ETKEELQVMPGNIVFVLKKGNDNW 42 (68)
T ss_dssp CSSSSCCCCTTCEEEECEECSSSC
T ss_pred CCcCCCCCCCCCEEEEEEeCCCCE
Confidence 567789999999999987765554
No 206
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.31 E-value=15 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
+.+.+|.++.||+|.|..+.-.|+
T Consensus 30 ~~~~eLsf~~Gd~i~v~~~~~~~W 53 (88)
T 2dbk_A 30 YDKTALALEVGDIVKVTRMNINGQ 53 (88)
T ss_dssp TCSSBCCBCTTCEEEEEEECTTSC
T ss_pred CCCCcccCCCCCEEEEEEecCCCE
Confidence 367889999999999987765554
No 207
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=51.21 E-value=15 Score=20.19 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEee-ccCC
Q 034043 78 QTPDELEMEDGDEIDAMLH-QTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~-q~GG 100 (105)
..+.+|.++.||+|.|..+ .-+|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~~ 36 (62)
T 2j6f_A 13 VHDDELTIRVGEIIRNVKKLQEEG 36 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEECSSTT
T ss_pred CCcCCcCCcCCCEEEEEEecCCCC
Confidence 4677999999999999887 4444
No 208
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=51.06 E-value=15 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.4
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-+|+
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~~~~W 38 (68)
T 2ew3_A 15 ENQGELGFKEGDIITLTNQIDENW 38 (68)
T ss_dssp CSTTBCCBCTTCEEEEEEESSSSE
T ss_pred CCCCccCCCCCCEEEEEEecCCCE
Confidence 467799999999999988765543
No 209
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=50.88 E-value=15 Score=20.59 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.0
Q ss_pred CCCccccCCCCCCEEEEEeeccCCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
...+.+|.++.||+|.|..+.-.|+
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~~~~~W 38 (69)
T 1ruw_A 14 SGSSSELPLKKGDIVFISRDEPSGW 38 (69)
T ss_dssp CSCTTBCCBCTTCEEEEEEECTTSE
T ss_pred CCCCCcccCCCCCEEEEEEecCCCe
Confidence 3578899999999999998765543
No 210
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=50.85 E-value=14 Score=19.79 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.3
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~g 35 (59)
T 1yn8_A 13 ENDNELRLAEGDIVFISYKHGQG 35 (59)
T ss_dssp CSTTBCCBCTTCEEEEEEEEETT
T ss_pred CCCCCcCCCCCCEEEEEEcCCCC
Confidence 46779999999999998765444
No 211
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=50.37 E-value=14 Score=21.27 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.4
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+...|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~gW 42 (80)
T 1ue9_A 19 SGSEQLSLAPGQLILILKKNTSGW 42 (80)
T ss_dssp CSTTBCCCCTTCEEEEEEECSSSE
T ss_pred CCCCCCCCCCCCEEEEEEecCCCc
Confidence 468899999999999998755543
No 212
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=50.18 E-value=51 Score=21.59 Aligned_cols=69 Identities=6% Similarity=0.147 Sum_probs=52.8
Q ss_pred EEEEEEecCcHHHHHHHHHHHH--------hCCCcccEEEEECCeecCC--CCCccccCCCCCCEEEEEeeccCCCCCC
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDR--------QSVELNSIAFLFDGRRLRG--EQTPDELEMEDGDEIDAMLHQTGGALGS 104 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~--------~g~~~~~~~F~fdG~~L~~--~~Tp~dl~medgD~Idv~~~q~GG~~~~ 104 (105)
.+.|.+-+.+||..|.+..-.- ..++.+++...-+|+...+ +.|.++.++.--+.|.+..-=.=|..||
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~G~~Gs 117 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLKGMANA 117 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCCCSTTT
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcCccCCc
Confidence 5689999999999998664322 2256678899999999964 7899999999999999885444444443
No 213
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=49.74 E-value=11 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=18.5
Q ss_pred CccccCCCCCCEEEEEeeccCCC
Q 034043 79 TPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
.+.+|.++.||+|.|..+.-.|+
T Consensus 21 ~~~eLs~~~Gd~i~v~~~~~~gW 43 (67)
T 2eyx_A 21 DKTALALEVGELVKVTKINVSGQ 43 (67)
T ss_dssp CSSBCCBCSSEEEEEEEECTTSE
T ss_pred CCCccccCCCCEEEEEEecCCCE
Confidence 56799999999999987755443
No 214
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=49.73 E-value=15 Score=19.70 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (57)
T 1cka_A 13 NDEEDLPFKKGDILRIRDKPEEQ 35 (57)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCCCCCCCCCEEEEEEecCCC
Confidence 35678999999999998775444
No 215
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=49.30 E-value=16 Score=19.79 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=18.5
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~~ 39 (60)
T 2xmf_A 17 QDTDELSFNANDIIDIIKEDPSG 39 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEECTTS
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 45678999999999998875444
No 216
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.21 E-value=17 Score=20.38 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (68)
T 2dl4_A 19 QENEDLEMRPGDIITLLEDSNEDW 42 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECCCSSE
T ss_pred CCcCCcCCCCCCEEEEEEeCCCCE
Confidence 467799999999999998755543
No 217
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=49.15 E-value=15 Score=19.76 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~~~ 37 (58)
T 1zlm_A 15 RTPDELYFEEGDIIYITDMSDTN 37 (58)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCCccCCCCCEEEEEEeCCCC
Confidence 45779999999999998774444
No 218
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=49.14 E-value=13 Score=20.25 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~W 41 (60)
T 2gnc_A 18 RSARELSFKKGASLLLYHRASEDW 41 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEEEETTE
T ss_pred CCcCCcCCCCCCEEEEEEecCCCE
Confidence 467789999999999988755543
No 219
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=48.97 E-value=15 Score=19.65 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 1sem_A 14 QESGELAFKRGDVITLINKDDPN 36 (58)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCCcCCCCCCEEEEEEecCCC
Confidence 45679999999999998875444
No 220
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=48.95 E-value=16 Score=19.61 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=18.1
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~~~ 37 (58)
T 2drm_A 15 QTGDELTFKEGDTIIVHQKDPAG 37 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCTTS
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 45678999999999998765443
No 221
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=48.91 E-value=15 Score=20.45 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (68)
T 2dl3_A 19 QTLKELPLQKGDIVYIYKQIDQNW 42 (68)
T ss_dssp SSTTBCCBCTTCEEEEEECCSTTE
T ss_pred CCcCCccCCCCCEEEEeEecCCCE
Confidence 467789999999999987654443
No 222
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=48.89 E-value=14 Score=20.70 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.6
Q ss_pred CccccCCCCCCEEEEEeeccCCC
Q 034043 79 TPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
.+.+|.++.||+|.|..+.-.|+
T Consensus 16 ~~~eLsf~~Gd~i~v~~~~~~~W 38 (67)
T 2bzy_A 16 DKTALALEVGDIVKVTRMNINGQ 38 (67)
T ss_dssp CTTBCCBCTTCEEEEEEECSSSE
T ss_pred CCCccccCCCCEEEEEEecCCCe
Confidence 57799999999999987755543
No 223
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=48.72 E-value=13 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 31 ~~~~eLsf~~GDiI~V~~~~~~gW 54 (83)
T 2ke9_A 31 HDPTALNVRAGDVITVLEQHPDGR 54 (83)
T ss_dssp SCTTBCCBCTTCEEEESCSSCSSC
T ss_pred CCCCcccccCCCEEEEEEecCCCe
Confidence 567899999999999987665554
No 224
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=48.67 E-value=16 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=18.1
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+. .|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~-~~ 40 (65)
T 1w1f_A 19 IHPDDLSFKKGEKMKVLEEH-GE 40 (65)
T ss_dssp CSSSCCCBCTTCEEEEEEEC-SS
T ss_pred cCCCcCCCCCCCEEEEEEcC-CC
Confidence 45778999999999998776 44
No 225
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=48.55 E-value=17 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=19.2
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~W 41 (67)
T 2o9s_A 18 DTQVEMSFRKGERITLLRQVDENW 41 (67)
T ss_dssp SSTTBCCBCTTCEEEEEEECSSSE
T ss_pred CCcCccCCCCCCEEEEEEecCCCE
Confidence 467899999999999997755543
No 226
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.16 E-value=16 Score=20.44 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=19.2
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~gW 42 (70)
T 2ct3_A 19 QNEDELELREGDRVDVMQQCDDGW 42 (70)
T ss_dssp SSTTBCCBCTTEEEEEEEECSSSC
T ss_pred CCcCCccCCCCCEEEEEEECCCCE
Confidence 467799999999999987755544
No 227
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=47.96 E-value=32 Score=21.71 Aligned_cols=69 Identities=19% Similarity=0.413 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCcEEEEEEecCCCE----EEEEEec--CcHHHHHHHHHHHHhCCCcccEE--EEECCeecCCCCCccccC
Q 034043 13 EEDKKPVDQSAHINLKVKGQDGNE----VFFRIKR--STQLKKLMNAYCDRQSVELNSIA--FLFDGRRLRGEQTPDELE 84 (105)
Q Consensus 13 ~~~~~p~~~~~~I~I~v~~~~g~~----~~~~ik~--tt~l~kL~~~y~~~~g~~~~~~~--F~fdG~~L~~~~Tp~dl~ 84 (105)
...++|......|.+. .+|.. +.+-|.+ ..+|..|++...++.+++...++ |.-+|.+|. ..++|
T Consensus 5 ~~~~~~~~~pk~I~v~---rNGD~~~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~---~l~dl- 77 (108)
T 2dnf_A 5 SSGRKPLQEPCTIFLI---ANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVE---SGAEL- 77 (108)
T ss_dssp SCSSCCCCCCEEEEEC---BTTCSSSCCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEES---STTSC-
T ss_pred cccCcCCCcceEEEEE---eCCCCCCCCEEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeC---CHHHh-
Confidence 3455555443344432 34432 4555553 56899999999999999864444 455898884 35555
Q ss_pred CCCCC
Q 034043 85 MEDGD 89 (105)
Q Consensus 85 medgD 89 (105)
+||+
T Consensus 78 -~dg~ 81 (108)
T 2dnf_A 78 -ENGQ 81 (108)
T ss_dssp -CSSC
T ss_pred -CCCC
Confidence 5777
No 228
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=47.82 E-value=16 Score=20.38 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 2djq_A 19 KNPGDLKFNKGDVILLRRQLDEN 41 (68)
T ss_dssp CCTTCCCCCTTCEEEEEECCCSS
T ss_pred CCcCCccCCCCCEEEEEEecCCC
Confidence 46779999999999997664444
No 229
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=47.78 E-value=18 Score=19.20 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (58)
T 4e6r_A 13 EREDELSLVXGSRVTVMEXCSDG 35 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEECTTS
T ss_pred CCCCEeeEeCCCEEEEeEcCCCC
Confidence 45788999999999998766444
No 230
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.70 E-value=13 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.5
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+ -.|+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~-~~gW 51 (79)
T 1x6b_A 29 KQADEVTLQQADVVLVLQQ-EDGW 51 (79)
T ss_dssp CSSSBCCCCTTEEEEEEEE-ETTE
T ss_pred CCcCCcCCCCCCEEEEEEe-CCCE
Confidence 4568999999999999887 5443
No 231
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=47.26 E-value=14 Score=20.26 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=18.7
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-.|+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~W 41 (64)
T 2ak5_A 18 TNEDELSFSKGDVIHVTRVEEGGW 41 (64)
T ss_dssp CSTTBCCBCTTCEEEEEECCTTSE
T ss_pred cCcCcccCCCCCEEEEeEecCCCE
Confidence 357799999999999987655443
No 232
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=47.14 E-value=14 Score=20.19 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-.|+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~W 36 (65)
T 2oaw_A 13 KSPREVTMKKGDILTLLNSTNKDW 36 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSSE
T ss_pred cCCCCCCCCCCCEEEEEEcCCCCE
Confidence 467899999999999988755443
No 233
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=47.09 E-value=15 Score=20.56 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (70)
T 2cuc_A 19 HRPEELDLQKGEGIRVLGKYQDG 41 (70)
T ss_dssp CSTTBCCBCTTCEEEEEEEEETT
T ss_pred CCCCcCCCCCCCEEEEEEecCCC
Confidence 56789999999999998775444
No 234
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=47.05 E-value=9.1 Score=21.61 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~g 35 (65)
T 2fei_A 13 QNEDELELKVGDIIDINEEVEEG 35 (65)
T ss_dssp CSTTBCCCCTTCEEECCCCSSSS
T ss_pred CCcCccCCCCCCEEEEEEecCCC
Confidence 56789999999999998764444
No 235
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.49 E-value=18 Score=20.79 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (79)
T 2yun_A 19 RQDDELNLEKGDIVIIHEKKEEGW 42 (79)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSSC
T ss_pred CCCCCcCCCCCCEEEEEEcCCCCE
Confidence 457799999999999987655554
No 236
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=46.44 E-value=12 Score=21.12 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=17.3
Q ss_pred Cccc-cCCCCCCEEEEEeeccCCC
Q 034043 79 TPDE-LEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 79 Tp~d-l~medgD~Idv~~~q~GG~ 101 (105)
.+.+ |.++.||+|.|.-+.-.|+
T Consensus 16 ~~~e~Ls~~~Gd~i~v~~~~~~~W 39 (60)
T 2lx7_A 16 RHGQGLRFAAGELITLLQVPDGGW 39 (60)
T ss_dssp CCSSCCCCCTTCEEEBSCCCTTSC
T ss_pred CCCCCccCCCCCEEEEeEecCCCe
Confidence 3444 9999999999887665554
No 237
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=46.31 E-value=16 Score=21.04 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.5
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~g 39 (73)
T 2lcs_A 17 ENDNELRLAEGDIVFISYKHGQG 39 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEEETTT
T ss_pred CCCCccCCcCCCEEEEEEEcCCC
Confidence 46779999999999998765544
No 238
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.20 E-value=20 Score=20.00 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=18.1
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 1x2k_A 19 RTPDELYFEEGDIIYITDMSDTN 41 (68)
T ss_dssp CSTTBCCCCSSCEEEEEECSCSS
T ss_pred CCCCcccCCCCCEEEEEEcCCCC
Confidence 45679999999999998764444
No 239
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.16 E-value=20 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 1x2p_A 19 TDETQLSFLRGEKILILRQTTAD 41 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECCSSS
T ss_pred CCcCCcCCCCCCEEEEEEcCCCC
Confidence 46778999999999998775444
No 240
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=45.97 E-value=19 Score=21.18 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=45.1
Q ss_pred EEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccc-cCCCCCCEEEEEeeccCCCCC
Q 034043 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDE-LEMEDGDEIDAMLHQTGGALG 103 (105)
Q Consensus 25 I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~d-l~medgD~Idv~~~q~GG~~~ 103 (105)
+-+.+....+- +.-.|.+..| |++.|+....+-+.+||..+......+- ..+..++.|.+.+..-+-..+
T Consensus 21 ~G~~l~~~~g~-~V~~V~~~sp--------A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~ 91 (93)
T 2dls_A 21 FGFTVSGDRIV-LVQSVRPGGA--------AMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSSGPS 91 (93)
T ss_dssp CCEEEECSSSC-EEEEECSSST--------TTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEECCCCCSS
T ss_pred eeEEEeCCCCE-EEEEECCCCH--------HHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEEECCCCCC
Confidence 44444433232 2335666555 5677898899999999999976422211 124579999998887665555
Q ss_pred CC
Q 034043 104 SG 105 (105)
Q Consensus 104 ~~ 105 (105)
||
T Consensus 92 s~ 93 (93)
T 2dls_A 92 SG 93 (93)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 241
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=45.91 E-value=19 Score=20.43 Aligned_cols=24 Identities=21% Similarity=0.226 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~~~~W 48 (73)
T 3c0c_A 25 ENDGELGFREGDLITLTNQIDENW 48 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEECSSSE
T ss_pred CCCCCccCcCCCEEEEEEecCCCE
Confidence 567799999999999988765543
No 242
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.65 E-value=15 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~~~~W 44 (72)
T 2dl8_A 21 RTARELSFKKGASLLLYQRASDDW 44 (72)
T ss_dssp SSSSBCCBCTTCEEEEEEEEETTE
T ss_pred CCCCEeccCCCCEEEEEeecCCCE
Confidence 467899999999999988765543
No 243
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=45.44 E-value=11 Score=25.39 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=53.2
Q ss_pred CCCcEEEEEEec-CCCEE-EEEEecCcHHHHHHHHHHHHhC--CCcccEEEEECCeecCCCCCccccCC-CCCCEEEEEe
Q 034043 21 QSAHINLKVKGQ-DGNEV-FFRIKRSTQLKKLMNAYCDRQS--VELNSIAFLFDGRRLRGEQTPDELEM-EDGDEIDAML 95 (105)
Q Consensus 21 ~~~~I~I~v~~~-~g~~~-~~~ik~tt~l~kL~~~y~~~~g--~~~~~~~F~fdG~~L~~~~Tp~dl~m-edgD~Idv~~ 95 (105)
++..|...|++. +|..+ .-.+++ .. |-........ .+++..+++..|+.--..+...++.+ =|+|+|.+.+
T Consensus 20 ~~GLipaIvQd~~tg~VLMlayMN~-EA---l~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V 95 (138)
T 1zps_A 20 GEDLIIAVAQDHETGEVLMVAYMNR-EA---LRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKV 95 (138)
T ss_dssp SCCCEEEEEEETTTCCEEEEEEECH-HH---HHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEEECCCCCEEEEEecCH-HH---HHHHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEE
Confidence 356888889985 45543 333443 22 2222222222 24566789999998888888888877 4899999999
Q ss_pred eccCCCC
Q 034043 96 HQTGGAL 102 (105)
Q Consensus 96 ~q~GG~~ 102 (105)
+|.|+.+
T Consensus 96 ~q~G~aC 102 (138)
T 1zps_A 96 EQEGGAC 102 (138)
T ss_dssp EESSCSS
T ss_pred EecCCcc
Confidence 9999976
No 244
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.12 E-value=21 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~~W 52 (88)
T 1x2q_A 29 VEDNELTFKHGEIIIVLDDSDANW 52 (88)
T ss_dssp CSSSCCCCCSSCEEEEEECSCSSS
T ss_pred CCcCccCCCCCCEEEEEEeCCCCE
Confidence 456789999999999998765554
No 245
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.69 E-value=16 Score=21.04 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.9
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-+|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (78)
T 2yuo_A 19 HDDDELGFRKNDIITIISQKDEHC 42 (78)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSSE
T ss_pred CCCCCccCCCCCEEEEEEecCCCE
Confidence 456799999999999997655543
No 246
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.79 E-value=21 Score=20.59 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.0
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~~~~W 52 (79)
T 1x69_A 29 AGDDEISFDPDDIITNIEMIDDGW 52 (79)
T ss_dssp SSSSBCCCCTTCEEEEEEECSSSE
T ss_pred CCCCCcCcCCCCEEEEeEecCCCe
Confidence 456789999999999987755553
No 247
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=43.71 E-value=16 Score=20.76 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.8
Q ss_pred CccccCCCCCCEEEEEeeccCCC
Q 034043 79 TPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
.+.+|.++.||+|.|..+.-+|+
T Consensus 12 ~~~eLs~~~Gd~i~v~~~~~~~W 34 (73)
T 2kxd_A 12 GGREVTMKKGDILTLLNSTNKDW 34 (73)
T ss_dssp CSCCCCBCTTCEEEEEECCSSSE
T ss_pred CCCEeeEcCCCEEEEEEecCCCE
Confidence 58899999999999988765543
No 248
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=43.52 E-value=17 Score=20.33 Aligned_cols=23 Identities=39% Similarity=0.800 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~~~ 42 (69)
T 2dil_A 20 QNPDELDLSAGDILEVILEGEDG 42 (69)
T ss_dssp SSSSSCCBCTTCEEEEEECCSSS
T ss_pred cCcCccCCCCCCEEEEEECCCCC
Confidence 45779999999999998874444
No 249
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.48 E-value=18 Score=20.88 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=18.9
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~gW 52 (78)
T 2ed0_A 29 DKEDELSFQEGAIIYVIKKNDDGW 52 (78)
T ss_dssp SSTTBCCBCSSCEEEEEEECSSSE
T ss_pred cCcCcccccCCCEEEEEEeCCCCE
Confidence 456799999999999988765443
No 250
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.19 E-value=13 Score=20.81 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (69)
T 2eqi_A 19 KRSDELTFCRGALIHNVSKEPGGW 42 (69)
T ss_dssp CSSSCCCBCTTCEEESCCCCSSSC
T ss_pred CCcCccCCCCCCEEEEEEcCCCCe
Confidence 457799999999999987655554
No 251
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=43.09 E-value=30 Score=20.85 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.6
Q ss_pred ccccCCCCCCEEEEE-eeccCCC
Q 034043 80 PDELEMEDGDEIDAM-LHQTGGA 101 (105)
Q Consensus 80 p~dl~medgD~Idv~-~~q~GG~ 101 (105)
+.+|.++.||+|.|. .+.-.|+
T Consensus 37 ~~eLsf~~Gd~i~v~~~~~~~gW 59 (96)
T 1wie_A 37 EAELPLTAGKYLYVYGDMDEDGF 59 (96)
T ss_dssp TTBCCCCTTCEEEEESSCCSSSC
T ss_pred CCeeeECCCCEEEEeEecCCCCE
Confidence 789999999999999 5444443
No 252
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=42.95 E-value=18 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.0
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~W 37 (80)
T 2pqh_A 14 KSPREVTMKKGDILTLLNSTNKDW 37 (80)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSSE
T ss_pred CCCCccCCCCCCEEEEEEecCCCE
Confidence 456799999999999988755543
No 253
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=42.46 E-value=18 Score=20.07 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.6
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (67)
T 1gl5_A 14 TEAHDLRLERGQEYIILEKNDLH 36 (67)
T ss_dssp SSSSBCCBCTTCEEEEEECSSSS
T ss_pred CCCCeecCCcCCEEEEEEccCCC
Confidence 46779999999999998875444
No 254
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.42 E-value=18 Score=20.96 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 20 ~~~~eLs~~~Gd~i~vl~~~~~g 42 (80)
T 2ekh_A 20 VQDSEISFPAGVEVQVLEKQESG 42 (80)
T ss_dssp SSTTSCCBCTTCEEEEEEECTTS
T ss_pred CCCCccCcCCCCEEEEEEeCCCC
Confidence 56788999999999998776544
No 255
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=42.41 E-value=21 Score=19.87 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~~~~ 37 (65)
T 1b07_A 15 NDEEDLPFKKGDILRIRDKPEEQ 37 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCccCCcCCCEEEEEEecCCC
Confidence 45678999999999998765444
No 256
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=42.09 E-value=13 Score=20.86 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (70)
T 2ecz_A 19 DTQVEMSFRKGERITLLRQVDENW 42 (70)
T ss_dssp CSTTBCCCCTTCBCEEEEEEETTE
T ss_pred CCcCCcCCCCCCEEEEEEecCCCe
Confidence 467799999999999987755543
No 257
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.00 E-value=16 Score=20.53 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~~~ 42 (70)
T 2ega_A 20 QENSELSLQAGEVVDVIEKNESG 42 (70)
T ss_dssp CSSSSCCCCTTCBCEEEEECTTS
T ss_pred CCCCcccCCCCCEEEEEEccCCC
Confidence 46789999999999998875544
No 258
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=41.99 E-value=14 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=18.0
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~~~~~ 44 (76)
T 2ed1_A 22 DNDDELTFIEGEVIIVTGEEDQE 44 (76)
T ss_dssp SSSSBCCCCSSCEEEESSCCSSS
T ss_pred CCcCCcCcCCCCEEEEEEecCCC
Confidence 56779999999999998654443
No 259
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=41.98 E-value=23 Score=20.29 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=18.4
Q ss_pred CccccCCCCCCEEEEEeec-cCCC
Q 034043 79 TPDELEMEDGDEIDAMLHQ-TGGA 101 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~q-~GG~ 101 (105)
.+.+|.++.||+|.|..+. -.|+
T Consensus 31 ~~~eLsf~~Gd~i~v~~~~~~~gW 54 (78)
T 1k1z_A 31 FGGFLRLNPGDIVELTKAEAEHNW 54 (78)
T ss_dssp SCCCCCBCTTCEEEEEECCSSCSC
T ss_pred CCCccCCCCCCEEEEEEcCCCCCe
Confidence 3689999999999999874 4544
No 260
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.85 E-value=16 Score=20.45 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.3
Q ss_pred CCCccccCCCCCCEEEEEeeccCCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
...+.+|.++.||+|.|..+...|+
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~~~~~~W 43 (71)
T 2dnu_A 19 SQSKDEIGFEKGVTVEVIRKNLEGW 43 (71)
T ss_dssp CSSTTBCCBCTTCEEEECCCCSSSE
T ss_pred CCCCCCCcCCCCCEEEEeECCCCCe
Confidence 3567899999999999987654443
No 261
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=41.74 E-value=60 Score=19.96 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=32.6
Q ss_pred CcEEEEEEecCCCEE-EEEEecC--cHHHHHHHHHHHHhCCCcccEEEEE
Q 034043 23 AHINLKVKGQDGNEV-FFRIKRS--TQLKKLMNAYCDRQSVELNSIAFLF 69 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~-~~~ik~t--t~l~kL~~~y~~~~g~~~~~~~F~f 69 (105)
..+.||.+ -+.++ .|.+.++ .++..++......+.++...+.+.|
T Consensus 5 ~~l~vKsk--f~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y 52 (86)
T 1wmh_B 5 SIVEVKSK--FDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGY 52 (86)
T ss_dssp CEEEEEEE--ETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEE
T ss_pred CEEEEEee--cCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEE
Confidence 34555544 44454 7999865 7899999999999998766777666
No 262
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=41.69 E-value=23 Score=19.21 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (65)
T 3u23_A 19 QNEDELELKVGDIIDINEEVEEG 41 (65)
T ss_dssp SSTTBCCBCTTCEEEEEEEEETT
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 45788999999999998765444
No 263
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=41.17 E-value=25 Score=18.51 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=17.6
Q ss_pred CCccccCCCCCCEEEEEeecc
Q 034043 78 QTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~ 98 (105)
..+.+|.++.||+|.|..+..
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~~ 32 (54)
T 2a28_A 12 QGDDEISIDPGDIITVIRGDD 32 (54)
T ss_dssp CSTTBCCBCTTCEEEEEECCC
T ss_pred CCCCCccCCCCCEEEEEEecC
Confidence 467799999999999987763
No 264
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=41.16 E-value=14 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=29.4
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhCCC-----cccEEEEE---CCeec
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQSVE-----LNSIAFLF---DGRRL 74 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g~~-----~~~~~F~f---dG~~L 74 (105)
.+.+.|.++.++..|.+...+++++. ...+++.| +|..+
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~V 49 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFV 49 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEE
Confidence 46788899999999999999999974 34455555 45444
No 265
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=41.01 E-value=62 Score=19.98 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=34.5
Q ss_pred CcEEEEEEecCCCEEEEEEec--CcHHHHHHHHHHHHhCCCcccEEEEE
Q 034043 23 AHINLKVKGQDGNEVFFRIKR--STQLKKLMNAYCDRQSVELNSIAFLF 69 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~--tt~l~kL~~~y~~~~g~~~~~~~F~f 69 (105)
..+.|+|.. .|....|.|.- +.++..|....+..++++ .+++.|
T Consensus 5 ~~v~lkV~f-~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY 50 (87)
T 2bkf_A 5 PQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKY 50 (87)
T ss_dssp CCEEEEEEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEE
T ss_pred ceEEEEEEE-cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEE
Confidence 467888876 46666777755 899999999999999996 556655
No 266
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=40.94 E-value=17 Score=21.13 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~~~~~ 44 (80)
T 2i0n_A 22 SDTSLLPFKRNDIITITFKDQEN 44 (80)
T ss_dssp CSSSSCCBCSSEEEEEEEESSSS
T ss_pred CCCCCcCCCCCCEEEEEEecCCC
Confidence 46788999999999999876554
No 267
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=40.92 E-value=23 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.9
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~~~gW 52 (72)
T 2l0a_A 29 AEDNELTFKAGEIITVLDDSDPNW 52 (72)
T ss_dssp SSTTBCCBCTTCEEEEEEEEETTE
T ss_pred CCCCccCCCCCCEEEEEEecCCCE
Confidence 456789999999999987655443
No 268
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=40.76 E-value=25 Score=19.19 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.1
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~~~~ 43 (65)
T 3ulr_B 21 AGDDEISFDPDDIITNIEMIDDG 43 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCcCEeeEecCCEEEEEEecCCC
Confidence 45678999999999998765444
No 269
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=40.50 E-value=23 Score=20.05 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.+..||+|.|..+.
T Consensus 14 ~~~~eLs~~~Gd~i~vl~~~ 33 (69)
T 2ydl_A 14 QNDDELTIKEGDIVTLINKD 33 (69)
T ss_dssp CSTTBCCBCTTCEEEEEESC
T ss_pred CCCCccccCCCCEEEEEEcC
Confidence 46789999999999998774
No 270
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=40.50 E-value=23 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=19.0
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-+|+
T Consensus 17 ~~~~eLs~~~Gd~i~vl~~~~~~W 40 (79)
T 3cqt_A 17 RTEDDLSFHKGEKFQILNSSEGDW 40 (79)
T ss_dssp CSTTBCCBCTTCEEEEEECTTSSE
T ss_pred CCcCcCCCCCCCEEEEEEecCCCe
Confidence 467799999999999987654443
No 271
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=40.36 E-value=27 Score=19.35 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=18.6
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~ 40 (69)
T 4esr_A 18 NRSDELTIHRGDIIRVFFKDNED 40 (69)
T ss_dssp CSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCcCcCCCCCCCEEEEEEecCCC
Confidence 46789999999999998765444
No 272
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.28 E-value=16 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=18.9
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~~W 52 (90)
T 2yup_A 29 DLEVELSFRKGEHICLIRKVNENW 52 (90)
T ss_dssp CSSSBCCCCTTCEEEESSCCCSSE
T ss_pred CCcCcCCCCCCCEEEEEEEcCCCe
Confidence 467889999999999987654443
No 273
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=40.02 E-value=26 Score=18.86 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 15 EESGDLPFRKGDVITILKKS 34 (60)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCEeeEcCCCEEEEEEeC
Confidence 45779999999999998764
No 274
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=39.89 E-value=25 Score=18.81 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 14 ESQDELTIKSGDKVYILDD 32 (60)
T ss_dssp CSTTBCCBCTTCEEEEEES
T ss_pred CCCCCccCCCCCEEEEEeC
Confidence 5677999999999999876
No 275
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=39.59 E-value=20 Score=19.97 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (71)
T 2jt4_A 18 ESQDELTIKSGDKVYILDDK 37 (71)
T ss_dssp SSTTBCCBCTTCEEEEEESS
T ss_pred CCCCcccCCCCCEEEEEECC
Confidence 46779999999999998764
No 276
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.58 E-value=10 Score=21.47 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.1
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~~~~~W 43 (71)
T 2gqi_A 20 PDTDEISFLKGDMFIVHNELEDGW 43 (71)
T ss_dssp TTSSCCCCCTTCBCCCCEECSSSC
T ss_pred CCCCCCCCCCCCEEEEEEecCCCE
Confidence 457899999999999987655554
No 277
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=39.58 E-value=29 Score=18.70 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~ 40 (64)
T 4f14_A 18 QDEDEVSFRDGDYIVNVQPIDDG 40 (64)
T ss_dssp CSTTBCCBCTTCEEEEEEECSSS
T ss_pred cCCCcCCCCCCCEEEEEEeCCCC
Confidence 45778999999999988765444
No 278
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=39.09 E-value=16 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=17.9
Q ss_pred CCccccCCCCCCEEEEEee-ccCC
Q 034043 78 QTPDELEMEDGDEIDAMLH-QTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~-q~GG 100 (105)
..+.+|.++.||+|.|..+ .-.|
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~~~g 43 (72)
T 1spk_A 20 NNKTLLSFAQGDVLTLLIPEEKDG 43 (72)
T ss_dssp SCSSBCCBCTTCEEEECCSSCBTT
T ss_pred CCCCCCcCCCCCEEEEeEccCCCC
Confidence 4678899999999999865 3443
No 279
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=39.06 E-value=18 Score=20.90 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.5
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-+|+
T Consensus 3 ~~~~eLs~~~Gd~i~v~~~~~~~W 26 (77)
T 2jmc_A 3 MGPREVTMKKGDILTLLNSTNKDW 26 (77)
T ss_dssp SSSCCCCCCTTCEEECCCCCCSSC
T ss_pred cCCCccCCCCCCEEEEEEecCCCE
Confidence 467899999999999988765554
No 280
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1
Probab=38.88 E-value=21 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-+|+
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~~~gW 52 (83)
T 1neg_A 29 KSPREVTMKKGDILTLLNSTNKDW 52 (83)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSSE
T ss_pred CCCCccccCCCCEEEEEEecCCCE
Confidence 567899999999999988755443
No 281
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.83 E-value=45 Score=27.39 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=46.2
Q ss_pred EEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccccCCCCCCEEEEEee
Q 034043 27 LKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 27 I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
+.+...++..+.|.......+..|+..|.+...-...-.+=++|-.. ...+.|..|.+.-||+|.+..+
T Consensus 538 ftl~~~~~~~~~F~T~~a~~I~~LI~~yi~~Lk~rs~~~~Al~d~~~-~~~~~~~~L~f~kGDlI~l~~~ 606 (655)
T 3pvl_A 538 FTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPN-PAGEESGFLSFAKGDLIILDHD 606 (655)
T ss_dssp EEEEETTSCEEEEECTTHHHHHHHHHHHHHHHHHHCCEEEESSCCCC------CCBCCCCTTCEEEESSC
T ss_pred EEEEeccCceEEEEcCCHHHHHHHHHHHHHHHhhcchhhhHHhhccc-CCCCCCCcccccCCCEEEEccc
Confidence 33344556677788888889999999999887543333444444432 1245688999999999998776
No 282
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=38.79 E-value=14 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.566 Sum_probs=14.9
Q ss_pred ccCCCCCCEEEEEeeccC
Q 034043 82 ELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 82 dl~medgD~Idv~~~q~G 99 (105)
.|+|+|||.|.+.+...-
T Consensus 119 ~L~LkDGD~V~I~v~~~~ 136 (146)
T 2oyn_A 119 QFNLKDGDVIKILIKGDK 136 (146)
T ss_dssp HHTCCTTCEEEEEEECCT
T ss_pred hcCCCCCCEEEEEEeCCC
Confidence 789999999999876543
No 283
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.78 E-value=34 Score=19.26 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 20 QTDDELSFPEGAIIRILNK 38 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEEC
Confidence 4567899999999999876
No 284
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=38.40 E-value=26 Score=19.58 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 27 ~~~~eLs~~~Gd~i~v~~~~~~~ 49 (73)
T 3h0h_A 27 ITEDDLSFHKGEKFQILNSSEGD 49 (73)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCcceEeCCCEEEEEEecCCC
Confidence 45779999999999998765444
No 285
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=38.31 E-value=11 Score=21.04 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=18.7
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~W 42 (68)
T 1wi7_A 19 QNDDELELKVGDIIEVVGEVEEGW 42 (68)
T ss_dssp SSTTBCCBCTTCEECCCEEEETTE
T ss_pred CCCCCccCcCCCEEEEEEcCCCCe
Confidence 467799999999999887654443
No 286
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=38.26 E-value=1.1e+02 Score=22.08 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=46.0
Q ss_pred cEEEEEEecCC--CEEEEEEec-------------------CcHHHHHHHHHHHHhCCC-----------cccEEEEECC
Q 034043 24 HINLKVKGQDG--NEVFFRIKR-------------------STQLKKLMNAYCDRQSVE-----------LNSIAFLFDG 71 (105)
Q Consensus 24 ~I~I~v~~~~g--~~~~~~ik~-------------------tt~l~kL~~~y~~~~g~~-----------~~~~~F~fdG 71 (105)
...|.|+..+. ...+|+|.. ...+..|.+.|....... ...++-+||-
T Consensus 77 ~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~dy 156 (308)
T 3qwy_A 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKF 156 (308)
T ss_dssp CEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEEETTEEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESSCB
T ss_pred CEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEEEeCeeeCCHHHHHHHHhhcccccchhccccccccceeEEEeceE
Confidence 45666665432 155777754 146888999887665421 0123444432
Q ss_pred eecCCCCCccccCCCCCCEEEEEeeccCCC
Q 034043 72 RRLRGEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 72 ~~L~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
....+.+|.+..||+|.|..+.-.|+
T Consensus 157 ----~~~~~~eLsf~~Gd~i~v~~~~~~~W 182 (308)
T 3qwy_A 157 ----TGERETDLPFEQGERLEILSKTNQDW 182 (308)
T ss_dssp ----CCSSTTBCCBCTTCEEEEEECCSSSE
T ss_pred ----cCCCCCcCcCCCCCEEEEEEcCCCCe
Confidence 23577899999999999987664443
No 287
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Probab=38.09 E-value=14 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=18.4
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~~~ 42 (67)
T 1aww_A 20 MNANDLQLRKGDEYFILEESNLP 42 (67)
T ss_dssp SSSSSCCCCSSCEEECCCCCSSS
T ss_pred CCCCCccCCCCCEEEEEEccCCC
Confidence 46789999999999998765444
No 288
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=37.84 E-value=32 Score=20.53 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=19.1
Q ss_pred CCCccccCCCCCCEEEEEeeccCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
...+.++.|+.||+|+|..+--.|
T Consensus 18 ~~~~~ei~lk~Gd~VeVl~k~~~g 41 (71)
T 1v1c_A 18 GAEQDAITLREGQYVEVLDAAHPL 41 (71)
T ss_dssp SCCTTBCCBCTTCEEEEEEEEETT
T ss_pred CCCcceeeecCCCEEEEEEcCCCC
Confidence 456779999999999998775544
No 289
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=37.83 E-value=21 Score=19.99 Aligned_cols=23 Identities=22% Similarity=0.318 Sum_probs=17.7
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.| .+.-.|+
T Consensus 22 ~~~~eLs~~~Gd~i~v-~~~~~~W 44 (72)
T 2kgt_A 22 RTDEELSFRAGDVFHV-ARKEEQW 44 (72)
T ss_dssp SSTTSCBCCTTCCEEE-EEECSSC
T ss_pred CCcCCcCCCCCCEEEE-eeCCCCE
Confidence 4577899999999999 6544443
No 290
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=37.73 E-value=28 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.8
Q ss_pred CCccccCCCCCCEEEEEe
Q 034043 78 QTPDELEMEDGDEIDAML 95 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~ 95 (105)
..+.+|.+..||+|.|..
T Consensus 23 ~~~~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 23 TAEQDLPFCKGDVLTIVA 40 (71)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCcCCCCCCCEEEEeE
Confidence 456799999999999988
No 291
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=37.69 E-value=9.6 Score=24.43 Aligned_cols=23 Identities=9% Similarity=0.342 Sum_probs=18.5
Q ss_pred CCCccccCCCCCCEEEEEeeccC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~G 99 (105)
.-...+|.++.|++++|+...-.
T Consensus 52 k~g~~DLpfkkGE~LeVI~~~e~ 74 (102)
T 1ri9_A 52 KWGTRDLQVKPGESLEVIQTTDD 74 (102)
T ss_dssp CCCTTBCCCCTTCBCEEEEESSS
T ss_pred cCCcccCCcCCCCEEEEEEeCCC
Confidence 44578999999999999876543
No 292
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=37.68 E-value=30 Score=18.57 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=19.1
Q ss_pred CCCccccCCCCCCEEEEEeeccCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
...+.+|.+..||+|.|..+.-.|
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~~~~~~ 40 (62)
T 3ngp_A 17 EKSPRELTVKKGDILTLLNSTNKD 40 (62)
T ss_dssp CCSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCCCccCCCCCEEEEeEecCCC
Confidence 346789999999999998775444
No 293
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.33 E-value=21 Score=20.26 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=18.3
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (77)
T 2d8j_A 19 RTAEDLSFRAGDKLQVLDTSHEG 41 (77)
T ss_dssp SSSSBCCBCTTCCEEEEECCSSS
T ss_pred CCCCccCCCCCCEEEEEECCCCC
Confidence 45678999999999998775444
No 294
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.11 E-value=25 Score=20.82 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.2
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~~~gW 52 (88)
T 2cub_A 29 EREDELSLIKGTKVIVMEKCSDGW 52 (88)
T ss_dssp CSTTBCCCCTTEEEEEEEECTTSE
T ss_pred CCCCCcCCCCCCEEEEEEccCCCe
Confidence 467899999999999988765443
No 295
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.88 E-value=17 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.0
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~W 45 (76)
T 2epd_A 22 RTAQELSFRRGDVLRLHERASSDW 45 (76)
T ss_dssp SSTTBCEECTTCEEEEEEEEETTE
T ss_pred CCCCccCCCCCCEEEEEEeCCCCE
Confidence 467789999999999988755443
No 296
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=36.68 E-value=20 Score=19.51 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=19.8
Q ss_pred CCeecCCCCCccccCCCCCCEEEEEee
Q 034043 70 DGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 70 dG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.|+-.-|..--+.|+++.||.+++..+
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCEEEeCHHHHHHcCcCCCCEEEEEEE
Confidence 344445555567899999999998875
No 297
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=36.55 E-value=30 Score=19.31 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=23.2
Q ss_pred cEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 64 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 64 ~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.++-+||- ....+.+|.+..||+|.|..+.-.|
T Consensus 7 ~~~al~dy----~~~~~~eLs~~~Gd~i~v~~~~~~~ 39 (73)
T 3thk_A 7 LVLALYDY----QEKSPREVTMKKGDILTLLNSTNKD 39 (73)
T ss_dssp EEEECSCB----CCCSTTBCCBCTTCEEEEEECCSSS
T ss_pred EEEECcCC----CcCCCCccCCCCCCEEEEEECCCCC
Confidence 44555553 2346789999999999998775444
No 298
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=36.44 E-value=1.1e+02 Score=22.40 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=37.0
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCC
Q 034043 19 VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE 61 (105)
Q Consensus 19 ~~~~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~ 61 (105)
++.-.++.|+|-..|+....+.|.++++-..|.+..+.+..+.
T Consensus 26 ~a~~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~ 68 (281)
T 4gmv_A 26 EAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG 68 (281)
T ss_dssp TTSSCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC
T ss_pred hcCcccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 3445688899998999999999999999999999999888764
No 299
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=36.43 E-value=23 Score=19.04 Aligned_cols=21 Identities=33% Similarity=0.560 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeecc
Q 034043 78 QTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~ 98 (105)
..+.+|.++.||+|.|..+..
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~ 35 (60)
T 2x3w_D 15 QEQDELSFKAGDELTKLGEED 35 (60)
T ss_dssp SSSSBCCBCTTCEEEECSCCC
T ss_pred cCCCcccCCCCCEEEEEEccC
Confidence 456799999999999987643
No 300
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=36.43 E-value=21 Score=19.30 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.+..||+|.|..+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 13 RNSSELSVMKDDVLEILDD 31 (60)
T ss_dssp SSTTBCCBCTTCEEEECGG
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 4677999999999999876
No 301
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.35 E-value=24 Score=19.65 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 19 DCSDELAFSRGDILTILEQH 38 (71)
T ss_dssp SSSSBCCCCSSCCEEEEESC
T ss_pred CCCCCCCCCCCCEEEEeEcC
Confidence 46779999999999998874
No 302
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=36.25 E-value=31 Score=18.18 Aligned_cols=29 Identities=3% Similarity=0.114 Sum_probs=22.9
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhCCCccc
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQSVELNS 64 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g~~~~~ 64 (105)
...+.|+-+..+..-++.||+..|++.+.
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCHHH
Confidence 34567777889999999999999987543
No 303
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.16 E-value=26 Score=20.38 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.0
Q ss_pred CCccccCCCCCCEEEEEeeccC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~G 99 (105)
..+.+|.++.||+|.|..+...
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~ 50 (81)
T 1x6g_A 29 PKPGELAFRKGDVVTILEACEN 50 (81)
T ss_dssp CCTTCCCBCTTCEEEEEECCCS
T ss_pred CCCCCCCCCCCCEEEEEeccCC
Confidence 4678899999999999876544
No 304
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=36.11 E-value=30 Score=19.25 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+-
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~ 39 (68)
T 2k2m_A 20 RNSSELSVKQRDVLEVLDDS 39 (68)
T ss_dssp CSSSBCCBCTTCEEEEEECS
T ss_pred CCCCcccCCCCCEEEEEEcC
Confidence 46779999999999998764
No 305
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=36.01 E-value=30 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 37 ~~~~eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 37 IHHEDLSFQKGDQMVVLEES 56 (86)
T ss_dssp SSSSCCCCCTTCEEEEEEES
T ss_pred CCCCcCcCCCCCEEEEEEcC
Confidence 45678999999999998776
No 306
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.91 E-value=29 Score=20.05 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.8
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~W 45 (81)
T 2ysq_A 22 MANRELAFKAGDVIKVLDASNKDW 45 (81)
T ss_dssp SSSSSCCCCTTCEEEEEECCSSSE
T ss_pred CCCCcCCCCCCCEEEEEEEcCcCE
Confidence 467789999999999987654443
No 307
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=35.87 E-value=18 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=17.9
Q ss_pred CCccccCCCCCCEEEEEee-ccCC
Q 034043 78 QTPDELEMEDGDEIDAMLH-QTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~-q~GG 100 (105)
..+.+|.++.||+|.|..+ ...|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~~ 42 (67)
T 2kxc_A 19 SNKTLLSFAQGDVITLLIPEEKDG 42 (67)
T ss_dssp SCSSBCCBCTTCEEEESSSSCBTT
T ss_pred CCCCCCcCCCCCEEEEeECCCCCC
Confidence 4678899999999999874 4443
No 308
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=35.73 E-value=35 Score=18.86 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=18.7
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.+..||+|.|..+.-.|+
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~~~~W 48 (72)
T 4glm_A 25 LEPNELDFEVGDKIRILATLEDGW 48 (72)
T ss_dssp CSTTBCCBCTTCEEEEEEECSTTE
T ss_pred CCCCcCCCCCCCEEEEEEccCCCE
Confidence 467789999999999987654443
No 309
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=35.33 E-value=18 Score=20.45 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (73)
T 2dbm_A 19 ENEGELGFKEGDIITLTNQIDEN 41 (73)
T ss_dssp CSTTCCCBCTTCEEECCBCSSSS
T ss_pred CCCCCccCCCCCEEEEEEecCCC
Confidence 45678999999999998765444
No 310
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.27 E-value=20 Score=20.31 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.0
Q ss_pred CCccccCCCCCCEEEEEeeccC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~G 99 (105)
..+.+|.++.||+|.|..+..+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~ 40 (73)
T 2dm1_A 19 RDMRELSLREGDVVRIYSRIGG 40 (73)
T ss_dssp CSTTBCCBCTTCEEECCBSSSS
T ss_pred CCCCcCCCCCCCEEEEEEecCC
Confidence 4678999999999999876543
No 311
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=35.10 E-value=39 Score=19.04 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.+..||+|.|..+-
T Consensus 16 ~~~~ELsf~~Gd~i~vl~~~ 35 (67)
T 2b86_A 16 QQDQELDIKKNERLWLLDDS 35 (67)
T ss_dssp SSTTSCCBCTTCEEEEEECS
T ss_pred CCCCccccCCCCEEEEEecC
Confidence 45779999999999998763
No 312
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Probab=34.97 E-value=16 Score=20.29 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~ 44 (68)
T 1s1n_A 22 QQVGDLTFKKGEILLVIEKKPDG 44 (68)
T ss_dssp SSSSCCCBCSSEEEEECSCCSSS
T ss_pred CCCCcCCCCCCCEEEEEEcCCCC
Confidence 45778999999999998765444
No 313
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=34.69 E-value=38 Score=25.46 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=39.5
Q ss_pred EEEEecCCC----EEEEEEecCcHHHHHHHHHHHHhCCCc-ccEEEEE--C--Ce--ecCCCCCccc
Q 034043 27 LKVKGQDGN----EVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF--D--GR--RLRGEQTPDE 82 (105)
Q Consensus 27 I~v~~~~g~----~~~~~ik~tt~l~kL~~~y~~~~g~~~-~~~~F~f--d--G~--~L~~~~Tp~d 82 (105)
++|...++. ...|++..+++.+.|++..|++.|+.. +-+-+.+ . |+ .|.++.+..+
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 445556766 789999999999999999999999843 3344433 2 22 4666666543
No 314
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=34.57 E-value=30 Score=19.17 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.+..||+|.|..+.
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 15 ESPDELSFRKGDIMTVLEQD 34 (69)
T ss_dssp SSTTBCCBCTTCEEEEEETT
T ss_pred CCCCccCCcCCCEEEEeECC
Confidence 46779999999999998775
No 315
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=34.53 E-value=29 Score=19.34 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 18 VTEEELNFEKGETMEVIEK 36 (71)
T ss_dssp CSSSBCCCCSSCCEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4567899999999999887
No 316
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=34.51 E-value=18 Score=20.70 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=18.9
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~W 45 (76)
T 1ujy_A 22 TNEDELSVCKGDIIYVTRVEEGGW 45 (76)
T ss_dssp SSTTSCCBCSSCCEEESSCCSSSC
T ss_pred CCCCcccCCCCCEEEEEEecCCCE
Confidence 457799999999999987655554
No 317
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.35 E-value=28 Score=19.42 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2da9_A 19 QNDDELTIKEGDIVTLINKD 38 (70)
T ss_dssp SSTTBCCCCTTEEEEEEECC
T ss_pred CCcCEeeEcCCCEEEEEECC
Confidence 56789999999999998764
No 318
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=34.26 E-value=46 Score=18.66 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (72)
T 2jw4_A 19 QQEQELDIKKNERLWLLDD 37 (72)
T ss_dssp SSTTSCCCCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4578999999999999875
No 319
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=33.81 E-value=52 Score=20.12 Aligned_cols=43 Identities=16% Similarity=0.410 Sum_probs=27.9
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCc-cccCCCC
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP-DELEMED 87 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp-~dl~med 87 (105)
..+|.+.+...+.+|.+.+++..++++. .|.++.+. .+|++..
T Consensus 17 ~~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDS 60 (101)
T 4dxe_H 17 NLYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADS 60 (101)
T ss_dssp -------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCc
Confidence 4578888889999999999999998754 45666666 6777643
No 320
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=33.47 E-value=28 Score=18.48 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=17.7
Q ss_pred CCccccCCCCCCEEEEEeecc
Q 034043 78 QTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~ 98 (105)
..+.+|.++.||+|.|..+..
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 13 KDDDEITITPGDKISLVARDT 33 (58)
T ss_dssp CSTTBCCBCTTCCEEEEECCS
T ss_pred cCCCcccCCCCCEEEEeEcCC
Confidence 457799999999999987764
No 321
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.20 E-value=65 Score=20.56 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=31.4
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE 61 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~ 61 (105)
..++||+-. .|....+.+.+.-.|+.|..+..+.+|-.
T Consensus 7 ~dvRiKfE~-~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ 44 (103)
T 2cu1_A 7 GDVRVKFEH-RGEKRILQFPRPVKLEDLRSKAKIAFGQS 44 (103)
T ss_dssp CEEEEEEEE-TTEEEEEEEESSCCHHHHHHHHHHHHSSC
T ss_pred CcEEEEEEe-cCeEEEEeccCCccHHHHHHHHHHHhCCe
Confidence 567777765 46677899999999999999999999963
No 322
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=33.18 E-value=81 Score=19.01 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=35.9
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEE
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 68 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~ 68 (105)
.|++.-+++..-.+.|++-.+++.-..+-.++.++.++.+..+
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3556668877778999999999999999999999988876544
No 323
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=33.04 E-value=34 Score=20.11 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 29 VTEEELNFEKGETMEVIEK 47 (91)
T ss_dssp SSSSBCCCCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4577899999999999887
No 324
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=33.01 E-value=60 Score=26.78 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=42.1
Q ss_pred CEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEEC-CeecCCCCCcccc
Q 034043 35 NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD-GRRLRGEQTPDEL 83 (105)
Q Consensus 35 ~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fd-G~~L~~~~Tp~dl 83 (105)
....|.+.+..++..|.....+..+++.+...|++. |..+.++..+..+
T Consensus 322 ~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 322 RVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp CCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 345799999999999999999999999999999996 6677788777765
No 325
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=32.88 E-value=26 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=18.0
Q ss_pred CCCCccccCCCCCCEEEEEeeccCC
Q 034043 76 GEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 76 ~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
|.+-.+.|+++.||+.++.++..+|
T Consensus 30 PaeI~kaLgIk~gD~fel~ve~kdg 54 (68)
T 3o27_A 30 PKDIAEALDIKPDDTFILNMEQKDG 54 (68)
T ss_dssp CHHHHHHTTCCTTCCEEEEEEEETT
T ss_pred cHHHHHHhCCCCCCEEEEEEecCCC
Confidence 3444567788888888888877666
No 326
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=32.55 E-value=56 Score=17.44 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeecc
Q 034043 78 QTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~ 98 (105)
..+.+|.+..||+|.|..+..
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~ 37 (63)
T 3eg3_A 17 SGDNTLSITKGEKLRVLGYNH 37 (63)
T ss_dssp CSSSBCCBCTTCEEEEEEECT
T ss_pred CCCCccCCCCCCEEEEEEeCC
Confidence 467789999999999988543
No 327
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=32.47 E-value=16 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCeecCCCCCccccCCCCCCEEEEEee
Q 034043 70 DGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 70 dG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.|+-+-|..--+.|+++.||.+++..+
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred CCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 466666777777888888888888764
No 328
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=32.44 E-value=41 Score=18.18 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 18 SHDGDLGFEKGEQLRILEQ 36 (62)
T ss_dssp CSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEc
Confidence 5677999999999999876
No 329
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=32.31 E-value=31 Score=19.25 Aligned_cols=19 Identities=26% Similarity=0.498 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (69)
T 1uhf_A 20 VEPGDLTFTEGEEILVTQK 38 (69)
T ss_dssp SSSSBCCBCTTCEEEECEE
T ss_pred CCcCccCCCCCCEEEEEEe
Confidence 4578999999999998765
No 330
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=32.23 E-value=32 Score=19.71 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeecc
Q 034043 78 QTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~ 98 (105)
..+.+|.+..||+|.|..+.-
T Consensus 25 ~~~~eLs~~~Gd~i~vl~~~~ 45 (79)
T 1uhc_A 25 RNPNELSVSANQKLKILEFKD 45 (79)
T ss_dssp CSSSBCCBCTTCEEEEEESCC
T ss_pred CCCCccCCCCCCEEEEEECCC
Confidence 467789999999999987653
No 331
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.17 E-value=24 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (85)
T 2dlp_A 20 DNCSLLSFHRGDLIKLLPV 38 (85)
T ss_dssp SSSSBCCBCTTCEEEECCC
T ss_pred cCcCCccCcCCCEEEEEEc
Confidence 4567999999999999875
No 332
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=32.11 E-value=38 Score=18.36 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (64)
T 2jte_A 18 TNEDELTFREGEIIHLISKE 37 (64)
T ss_dssp SSSSBCCBCTTCEEEEEESC
T ss_pred cCCCccCCCCCCEEEEEECC
Confidence 46779999999999998764
No 333
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=32.02 E-value=55 Score=22.27 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHHHhCCC------cccEEEEECCe
Q 034043 44 STQLKKLMNAYCDRQSVE------LNSIAFLFDGR 72 (105)
Q Consensus 44 tt~l~kL~~~y~~~~g~~------~~~~~F~fdG~ 72 (105)
+..+..|.+.|+++.|+| -+.+.|.+|++
T Consensus 2 ~~~~e~LL~efg~~lGLp~L~fDeng~C~L~IDd~ 36 (156)
T 1k3e_A 2 SSRSELLLEKFAEKIGIGSISFNENRLCSFAIDEI 36 (156)
T ss_dssp CCHHHHHHHHHHHHHSCCCCCCCTTSCCEEEECCC
T ss_pred chHHHHHHHHHHHHcCCCCcccCCCCcEEEEECCe
Confidence 567899999999999997 25788888885
No 334
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.87 E-value=40 Score=18.67 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.++.||+|.|..+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxb_A 19 RNANELSVLKDEVLEVLED 37 (68)
T ss_dssp SSSSBCCBCTTCEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEEc
Confidence 4678999999999999875
No 335
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=31.86 E-value=39 Score=18.90 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.+..||+|.|..+.
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (73)
T 2k9g_A 21 QNDDELTIKEGDIVTLINKD 40 (73)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCeeeECCCCEEEEEECC
Confidence 46789999999999998764
No 336
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}
Probab=31.84 E-value=22 Score=21.50 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.0
Q ss_pred CCccccCCCCCCEEEEEeeccCCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
..+.+|.+..||+|.|..+.-.|+.
T Consensus 30 ~~~~eLsf~~Gd~i~V~~~~~~gWw 54 (92)
T 2o2o_A 30 QNDDELELKVGDIIEVVGEVEEGWW 54 (92)
T ss_dssp CSSSCCCBCSSCEEECCCGGGSSCB
T ss_pred CCCccccccCCCEEEEeEecCCCEE
Confidence 4577999999999999877666653
No 337
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}
Probab=31.53 E-value=45 Score=20.19 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=18.7
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 39 ~~~~eLs~~~Gd~i~v~~~~~~~W 62 (109)
T 2yt6_A 39 RTTEDLSFKKGERFQIINNTEGDW 62 (109)
T ss_dssp SSTTSCCCCTTCEEEEEECSCTTC
T ss_pred CCCCccCCCCCCEEEEEEccCCCc
Confidence 346889999999999987655544
No 338
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=31.32 E-value=47 Score=19.14 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=36.6
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCC--CccccCCCCCCEEEEEeeccC
Q 034043 38 FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQ--TPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 38 ~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~--Tp~dl~medgD~Idv~~~q~G 99 (105)
.-.|.+..| |++.|+....+-+.+||..+.... ....+--..++.|.+.+..-|
T Consensus 31 V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g 86 (91)
T 2pkt_A 31 ISRVTPGSK--------AALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86 (91)
T ss_dssp EEEECTTSH--------HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEEC
T ss_pred EEEECCCCH--------HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 345666655 566789999999999999997654 222221226888888876644
No 339
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=31.15 E-value=24 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 17 ~~~~eLsf~~Gd~i~v~~~~ 36 (93)
T 1uff_A 17 RNHDEMSFNSGDIIQVDEKT 36 (93)
T ss_dssp CSSSCCCBCTTCEEEECSSC
T ss_pred CCCCCcCCCCCCEEEEeEcc
Confidence 45678999999999998765
No 340
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=31.11 E-value=43 Score=18.52 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.+..||+|.|..+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxt_A 19 RNPRELTVVQGEKLEVLDH 37 (68)
T ss_dssp CSSSBCCBCTTCEEEEEEC
T ss_pred CCcCcCCCCCCCEEEEEEc
Confidence 4678999999999999876
No 341
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=31.03 E-value=26 Score=24.23 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=8.9
Q ss_pred CCCCccccCCCCCCEEEEEeeccCCC
Q 034043 76 GEQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 76 ~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
+.+=-..|.++|||+|.|.+.-.|-+
T Consensus 201 ~~~L~~~l~l~~g~~v~~~~~~~~~~ 226 (230)
T 3cta_A 201 DKYLREEINLHDGDRVSVEVYTEGHH 226 (230)
T ss_dssp C------------CEEEEEECC----
T ss_pred CcchHhhcCCCCCCEEEEEEEecCcc
Confidence 33333447799999999999888754
No 342
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.97 E-value=22 Score=21.27 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=34.9
Q ss_pred HHHHhC-CCcccEEEEECCeecCCCCCcccc-C-C-CCCCEEEEEeeccCCCCCCC
Q 034043 54 YCDRQS-VELNSIAFLFDGRRLRGEQTPDEL-E-M-EDGDEIDAMLHQTGGALGSG 105 (105)
Q Consensus 54 y~~~~g-~~~~~~~F~fdG~~L~~~~Tp~dl-~-m-edgD~Idv~~~q~GG~~~~~ 105 (105)
-|++.| +....+-+.+||..+.... ..++ . + ..++.|.+.+..-|-..+||
T Consensus 50 pA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~~g~~v~l~v~R~g~~~~s~ 104 (104)
T 2djt_A 50 PAQRCGRLEVGDLVLHINGESTQGLT-HAQAVERIRAGGPQLHLVIRRPLSGPSSG 104 (104)
T ss_dssp HHHHHCSCCTTCBEEEETTEECTTCC-HHHHHHHHHHTCSEEEEEECCCCCCCCCC
T ss_pred HHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcCCCeEEEEEEECCCCCCCC
Confidence 355668 8888999999999997642 2221 1 1 25888888887766555654
No 343
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=30.48 E-value=47 Score=18.70 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (74)
T 1j3t_A 22 KKDNHLNFSKHDIITVLEQQ 41 (74)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEecC
Confidence 46678999999999998774
No 344
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.38 E-value=30 Score=19.71 Aligned_cols=21 Identities=10% Similarity=0.378 Sum_probs=17.1
Q ss_pred ccccCCCCCCEEEEEeeccCC
Q 034043 80 PDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 80 p~dl~medgD~Idv~~~q~GG 100 (105)
+.+|.++.||+|.|..+.-.|
T Consensus 23 ~~eLs~~~Gd~i~vl~~~~~g 43 (75)
T 2egc_A 23 EETAGFQEGVSMEVLERNPNG 43 (75)
T ss_dssp SSSCCBCTTCEEEECEECTTS
T ss_pred CCcCCCCCCCEEEEEEcCCCC
Confidence 678999999999998765443
No 345
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=30.01 E-value=35 Score=19.73 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=16.0
Q ss_pred CCccccCCCCCCEEEEEe
Q 034043 78 QTPDELEMEDGDEIDAML 95 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~ 95 (105)
..+.+|.++.||+|.|.-
T Consensus 17 ~~~~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 17 EREEDIDLHLGDILTVNK 34 (83)
T ss_dssp CSTTBCCBCTTCEEEEEH
T ss_pred CCCCccccCCCCEEEEee
Confidence 578899999999999984
No 346
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Probab=29.66 E-value=31 Score=21.73 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEe
Q 034043 78 QTPDELEMEDGDEIDAML 95 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~ 95 (105)
..+.+|.++.||+|.|..
T Consensus 56 ~~~dELsf~~GDiI~Vl~ 73 (115)
T 1bb9_A 56 TDTDELQLKAGDVVLVIP 73 (115)
T ss_dssp SSTTBCCBCTTCEEEEEC
T ss_pred CCCCccCcCCCCEEEEee
Confidence 567889999999999998
No 347
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.41 E-value=38 Score=19.71 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=18.0
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 31 ~~~~eLs~~~Gd~i~v~~~~~~~ 53 (85)
T 2yuq_A 31 NDPQELALRRNEEYCLLDSSEIH 53 (85)
T ss_dssp SCSSBCCCCBTEEEEEEECCSSS
T ss_pred CCCCcCCCCCCCEEEEEEecCCC
Confidence 46678999999999998765433
No 348
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.34 E-value=46 Score=18.41 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 19 ~~~~eLs~~~Gd~i~vl~~~ 38 (70)
T 2ct4_A 19 SSEGTISMAEGEDLSLMEED 38 (70)
T ss_dssp CSTTCCCBCTTCEEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEecc
Confidence 56789999999999998764
No 349
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A
Probab=29.28 E-value=36 Score=20.22 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=20.4
Q ss_pred cEEEEECCeecCCCCCccccCCCCCCEEEEEe
Q 034043 64 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 64 ~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~ 95 (105)
.++-+|+-.. ..+.+|.++.||+|.|..
T Consensus 13 ~~~Alydy~a----~~~~ELsf~~GD~I~V~~ 40 (90)
T 3o5z_A 13 QYRALYPFRR----ERPEDLELLPGDVLVVSR 40 (90)
T ss_dssp EEEECSCBCC----CSTTBCCBCTTCEEEEEH
T ss_pred EEEEeeeECC----CCCCccCCcCCCEEEEEe
Confidence 4455555432 578899999999999973
No 350
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=40 Score=19.43 Aligned_cols=19 Identities=5% Similarity=0.139 Sum_probs=15.9
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.+..||+|.|..+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (79)
T 2cud_A 29 PDISPPIFRRGEKLRVISD 47 (79)
T ss_dssp TTTSCCSSCTTCEEEEEEE
T ss_pred CCCCcCCCCCCCEEEEEec
Confidence 4567899999999999863
No 351
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=28.89 E-value=42 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=17.3
Q ss_pred CCcc-ccCCCCCCEEEEEeecc
Q 034043 78 QTPD-ELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~-dl~medgD~Idv~~~q~ 98 (105)
..+. +|.+..||+|.|..+.-
T Consensus 19 ~~~~dELsf~~Gd~i~Vl~~~~ 40 (69)
T 1nm7_A 19 ENPEMEVALKKGDLMAILSKKD 40 (69)
T ss_dssp SSTTSCCCCCTTCEEEECCSSS
T ss_pred CCCCCccCCCCCCEEEEEecCC
Confidence 4566 99999999999987754
No 352
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.64 E-value=1.1e+02 Score=19.31 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=41.2
Q ss_pred CCCCCCcEEEEEEecCCCEEEEEEec--CcHHHHHHHHHHHHhCCCcccEEEEE-CCeecCCC
Q 034043 18 PVDQSAHINLKVKGQDGNEVFFRIKR--STQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGE 77 (105)
Q Consensus 18 p~~~~~~I~I~v~~~~g~~~~~~ik~--tt~l~kL~~~y~~~~g~~~~~~~F~f-dG~~L~~~ 77 (105)
|..=...+.|+|.. .|....|.|.- +.++..|....+..++++.=+++++= ||+.|.-+
T Consensus 8 ~~~m~~~v~lkV~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~ 69 (101)
T 1wj6_A 8 PHSMEPQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSIN 69 (101)
T ss_dssp CCSSCSCEEEEEEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCC
T ss_pred ccccCccEEEEEEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEe
Confidence 45555688999876 46666777755 89999999999999999643333332 45555543
No 353
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=28.59 E-value=46 Score=19.90 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 41 ~~~~ELsf~~GD~I~Vl~~~ 60 (89)
T 2rf0_A 41 AGDEELTLRRGDRVQVLSQD 60 (89)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCccccCCCCEEEEEecc
Confidence 45679999999999999874
No 354
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...
Probab=28.56 E-value=42 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.5
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+.-||+|.|..+.-.|
T Consensus 18 ~~~~eLsf~~Gd~i~vl~~~~~~ 40 (84)
T 4ag1_C 18 TRWTDLSFHKGEKFQILEFGPGD 40 (84)
T ss_dssp SBTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCcccccCCCEEEEEEecCCC
Confidence 45788999999999998766444
No 355
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=28.43 E-value=48 Score=19.37 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEee
Q 034043 78 QTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~ 96 (105)
..+.+|.+..||+|.|..+
T Consensus 43 ~~~~eLs~~~Gd~i~v~~~ 61 (86)
T 2jxb_A 43 QQDQELDIKKNERLWLLDD 61 (86)
T ss_dssp CSSSBCCCCTTEEEEEEEC
T ss_pred CCCCEeccCCCCEEEEEec
Confidence 4567999999999999876
No 356
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.91 E-value=30 Score=20.59 Aligned_cols=20 Identities=40% Similarity=0.360 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 28 ~~~~eLs~~~Gd~i~v~~~~ 47 (94)
T 2e5k_A 28 QNDDELELVPGDFIFMSPME 47 (94)
T ss_dssp SSSSBCCBCTTCEEEECGGG
T ss_pred CCCCCcCCCCCCEEEEEECc
Confidence 56789999999999998764
No 357
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=27.82 E-value=41 Score=20.13 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.2
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.++.||+|.|..+.-.|
T Consensus 46 ~~~~eLs~~~Gd~i~v~~~~~~~ 68 (98)
T 1udl_A 46 NNEDELSFSKGQLINVMNKDDPD 68 (98)
T ss_dssp SSTTSCCCCTTCEEEECBCCSSS
T ss_pred CCCCccCCcCCCEEEEEEecCCC
Confidence 35679999999999998765444
No 358
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=27.79 E-value=75 Score=16.89 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEEC
Q 034043 46 QLKKLMNAYCDRQSVELNSIAFLFD 70 (105)
Q Consensus 46 ~l~kL~~~y~~~~g~~~~~~~F~fd 70 (105)
=.+.|.+.+++..|++.+.+...|.
T Consensus 20 l~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 20 LVRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcccEEEEEE
Confidence 3567778889999999887776554
No 359
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.64 E-value=42 Score=19.19 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~ 44 (78)
T 2dl5_A 25 SQPDELTIEEHEVLEVIEDG 44 (78)
T ss_dssp CSTTBCCBCSSEEEEEEECC
T ss_pred CCCCCCCCCCCCEEEEEecc
Confidence 45679999999999998875
No 360
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.39 E-value=58 Score=19.17 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=38.8
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCcccc--CCCCCCEEEEEeeccCCCCCCC
Q 034043 38 FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL--EMEDGDEIDAMLHQTGGALGSG 105 (105)
Q Consensus 38 ~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl--~medgD~Idv~~~q~GG~~~~~ 105 (105)
.-.|.+..| |++.|+....+-+.+||..+.... ..++ .+..++.|.+.+..-|--..+|
T Consensus 40 V~~V~~~sp--------A~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~~~~v~l~v~R~g~~p~~~ 100 (100)
T 2eeh_A 40 VSKVEEGSS--------AERAGLCVGDKITEVNGLSLESTT-MGSAVKVLTSSSRLHMMVRRMGSGPSSG 100 (100)
T ss_dssp EEEECTTSH--------HHHHTCCSSCEEEEETTEECSSCC-HHHHHHHHHSCSSEEEEEEECSCCCCCC
T ss_pred EEEECCCCH--------HHHcCCCCCCEEEEECCEECCCCC-HHHHHHhhcCCCEEEEEEEECCcCCCCC
Confidence 345655544 567788889999999999997643 2222 1344788888877666544443
No 361
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=27.33 E-value=45 Score=21.08 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHhCCCcc-------------cEEEEECCeecCCCCCccccCCCCCCEEEEEeeccCC
Q 034043 45 TQLKKLMNAYCDRQSVELN-------------SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 45 t~l~kL~~~y~~~~g~~~~-------------~~~F~fdG~~L~~~~Tp~dl~medgD~Idv~~~q~GG 100 (105)
.+++.|.+..++++..... .+-.+.||..+.-- --.+..++|||+|.++...-||
T Consensus 35 ~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l-~gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 35 TNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVV-GGMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp CCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH-TSSCCCCCSSCEEEEEECCCCC
T ss_pred ccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeecc-CCcccCCCCcCEEEEeCCCccc
Confidence 4899999988887632111 13344455443210 0123458999999887777666
No 362
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.92 E-value=48 Score=19.01 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~ 48 (81)
T 1x43_A 29 ANSTELSLLADEVITVFSVV 48 (81)
T ss_dssp SSTTBCCCCTTCEEEEECCT
T ss_pred CCCCcCCCCCCCEEEEEEcC
Confidence 45679999999999998773
No 363
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.85 E-value=31 Score=19.80 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeecc
Q 034043 78 QTPDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~ 98 (105)
..+.+|.++.||+|.|..+.-
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~ 49 (80)
T 2d8h_A 29 QQPGDLNFQAGDRITVISKTD 49 (80)
T ss_dssp SSTTBCEECTTCEEEEEECCS
T ss_pred CCCCeeeEcCCCEEEEeECcC
Confidence 356689999999999987653
No 364
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.44 E-value=53 Score=18.52 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.7
Q ss_pred CccccCCCCCCEEEEEeec
Q 034043 79 TPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~q 97 (105)
.+.+|.++.||+|.|..+.
T Consensus 23 ~~~eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 23 GNNELTVTEGEIITVTNPN 41 (77)
T ss_dssp TSSBCCCCTTCEEEEEESC
T ss_pred CCCeecCCCCCEEEEeEcc
Confidence 6779999999999999874
No 365
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=26.31 E-value=68 Score=19.21 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=42.4
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCcccc--CCCCCCEEEEEeec
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEL--EMEDGDEIDAMLHQ 97 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~dl--~medgD~Idv~~~q 97 (105)
.+.|.....++...-+.|.+..|= ..+++.|+.+..+-..+||+.+........+ .+..++.|.+.+..
T Consensus 24 ~~g~~~~~~~~~~~G~~V~~~~pa-----s~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 94 (105)
T 2i4s_A 24 YVRLSQVKRDDKVLGYRVSPGKDP-----VLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 94 (105)
T ss_dssp HEEEEEEEETTEEEEEEEEECSCT-----HHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEE
T ss_pred hceeEEEecCCcEEEEEEecCCCC-----CHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence 344444434444334556555542 2445669999999999999999765433322 13568888877754
No 366
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=25.85 E-value=52 Score=22.17 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=44.0
Q ss_pred EEEEEEecCcHHHHHHHHHHHHhCCCc---c--cEEEEE-C---C-------------eec-CCCCCccccCCCCCCEEE
Q 034043 36 EVFFRIKRSTQLKKLMNAYCDRQSVEL---N--SIAFLF-D---G-------------RRL-RGEQTPDELEMEDGDEID 92 (105)
Q Consensus 36 ~~~~~ik~tt~l~kL~~~y~~~~g~~~---~--~~~F~f-d---G-------------~~L-~~~~Tp~dl~medgD~Id 92 (105)
++.+..=++.+|+.|-....+...-.+ . +++|+| | | .+- .++.|..++...-||-|+
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 577888889999999887777654211 1 233333 2 2 211 368999999999999999
Q ss_pred EEeecc
Q 034043 93 AMLHQT 98 (105)
Q Consensus 93 v~~~q~ 98 (105)
|.|-..
T Consensus 135 vaI~pP 140 (143)
T 4a6q_A 135 IAITPP 140 (143)
T ss_dssp EEEECG
T ss_pred EEEeCC
Confidence 988643
No 367
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}
Probab=25.82 E-value=20 Score=21.16 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.9
Q ss_pred CCccccCCCCCCEEEEEeeccCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
..+.+|.++.||+|.|..+.-.|+
T Consensus 30 ~~~~eLsf~~Gd~I~Vl~~~~~gW 53 (79)
T 1z9q_A 30 NSKLELNFKAGDVIFLLSRINKDW 53 (79)
T ss_dssp SSTTBCCCCTTCCBCCCEESSSSE
T ss_pred CCCCcccccCCCEEEEeEecCCCE
Confidence 567789999999999987755543
No 368
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=25.81 E-value=54 Score=17.93 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.4
Q ss_pred CccccCCCCCCEEEEEee
Q 034043 79 TPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 79 Tp~dl~medgD~Idv~~~ 96 (105)
.+++|.+..||+|.|..+
T Consensus 21 ~~e~Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 21 NSTLLSFKEGDLITLLVP 38 (67)
T ss_dssp CTTBCCBCTTCEEEECSS
T ss_pred CCCCccCCCCCEEEEeec
Confidence 345699999999999754
No 369
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=25.46 E-value=1.3e+02 Score=19.51 Aligned_cols=30 Identities=0% Similarity=0.103 Sum_probs=27.1
Q ss_pred CCEEEEEEecCcHHHHHHHHHHHHhCCCcc
Q 034043 34 GNEVFFRIKRSTQLKKLMNAYCDRQSVELN 63 (105)
Q Consensus 34 g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~ 63 (105)
++.+.+++.+...+..-...||++.++...
T Consensus 12 g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a 41 (147)
T 3hwu_A 12 PTGYLMVLRHGDNVLQNLEQLARDEHIPSA 41 (147)
T ss_dssp TTEEEEEEETTCBHHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHcCCCEE
Confidence 677899999999999999999999998654
No 370
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=25.18 E-value=48 Score=19.77 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHhC-CCcccEEEEECCeecCCCC--CccccCCCCCCEEEEEeeccC-CCCCCC
Q 034043 55 CDRQS-VELNSIAFLFDGRRLRGEQ--TPDELEMEDGDEIDAMLHQTG-GALGSG 105 (105)
Q Consensus 55 ~~~~g-~~~~~~~F~fdG~~L~~~~--Tp~dl~medgD~Idv~~~q~G-G~~~~~ 105 (105)
|++.| +.....-+..||..+.... ....+--..++.|.+.+...+ |..++|
T Consensus 51 A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~~~~g 105 (105)
T 1wha_A 51 AHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPSSG 105 (105)
T ss_dssp HHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCCCCCSCC
T ss_pred HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCCCCCC
Confidence 55678 8888888999999987522 111111223777777665544 444544
No 371
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=25.04 E-value=74 Score=17.26 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEEC
Q 034043 46 QLKKLMNAYCDRQSVELNSIAFLFD 70 (105)
Q Consensus 46 ~l~kL~~~y~~~~g~~~~~~~F~fd 70 (105)
=.+.|.+++++..|++++.+...+.
T Consensus 18 L~~~it~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 18 FVERLTSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred HHHHHHHHHHHHhCcCcceEEEEEE
Confidence 3556778888999998877665543
No 372
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=24.90 E-value=1.3e+02 Score=18.82 Aligned_cols=44 Identities=5% Similarity=-0.040 Sum_probs=37.2
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEE
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 69 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~f 69 (105)
.|++.-+++..-.+.|++..++..-..+-.++.++.++.+..+-
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 58 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYR 58 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEE
Confidence 56666788877789999999999999999999999988876553
No 373
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}
Probab=24.49 E-value=61 Score=20.39 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=18.6
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 15 ~~~~ELsf~~Gd~i~vl~~~~~~ 37 (120)
T 2kym_A 15 ERDDELDVSPGENLSICAHYDYE 37 (120)
T ss_dssp CSTTCCCBCTTCEEEEEEEETTT
T ss_pred CCCCccCCCCCCEEEEEEecCCC
Confidence 56789999999999998775444
No 374
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=24.49 E-value=53 Score=18.64 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=17.2
Q ss_pred CCcc-ccCCCCCCEEEEEeecc
Q 034043 78 QTPD-ELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~-dl~medgD~Idv~~~q~ 98 (105)
..+. +|.++.||+|.|.-+.-
T Consensus 26 ~~~~~eLs~~~Gd~i~v~~~~~ 47 (80)
T 2v1r_A 26 ENPEMEVALKKGDLMAILSKKD 47 (80)
T ss_dssp SSTTTBCCBCTTCEEEEEEEEC
T ss_pred CCCCCEecCCCCCEEEEEECCC
Confidence 4566 99999999999987754
No 375
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=24.45 E-value=47 Score=18.49 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.+..||+|.|..+.
T Consensus 23 ~~~~eLs~~~Gd~i~v~~~~ 42 (74)
T 2m0y_A 23 RGADELSLQIGDTVHILETY 42 (74)
T ss_dssp CSSSBCCEETTEEEEEEEBS
T ss_pred CCcCcccCCCCCEEEEEEcC
Confidence 46788999999999998764
No 376
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=24.43 E-value=37 Score=25.91 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=13.8
Q ss_pred ccccCCCCCCEEEEEee
Q 034043 80 PDELEMEDGDEIDAMLH 96 (105)
Q Consensus 80 p~dl~medgD~Idv~~~ 96 (105)
-.++-|+|||+|+++.+
T Consensus 360 Gkdyvv~DGDVi~iv~k 376 (376)
T 4a9a_A 360 GLSHILEDEDVVTILKK 376 (376)
T ss_dssp CTTCBCCTTCEEEEEEC
T ss_pred CCCcEEcCCCEEEEEeC
Confidence 45888999999998753
No 377
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=24.28 E-value=56 Score=16.44 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=20.9
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCCcc
Q 034043 38 FFRIKRSTQLKKLMNAYCDRQSVELN 63 (105)
Q Consensus 38 ~~~ik~tt~l~kL~~~y~~~~g~~~~ 63 (105)
.+.|+-...+..-.+.+|+..|++.+
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g~srS 29 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMGLSKS 29 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCHH
T ss_pred eEEEecCHHHHHHHHHHHHHHCcCHH
Confidence 45667778899999999999998653
No 378
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=24.08 E-value=21 Score=23.45 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.7
Q ss_pred CCCccccCCCCCCEEEEEe
Q 034043 77 EQTPDELEMEDGDEIDAML 95 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~ 95 (105)
-++++.|+++|||.|.|.-
T Consensus 59 p~dA~~lGI~dGd~V~V~s 77 (146)
T 2ki8_A 59 EEDWNALGLQEGDRVKVKT 77 (146)
T ss_dssp HHHHHHHTCCTTCEEEEEC
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 3568899999999988864
No 379
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=23.90 E-value=2.3e+02 Score=21.25 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred EEEEecCCCEEEEEEec-CcHHHHHHHHHHHHhCC----CcccEEEEECCeec--------CCCCCccccCCCCCCEEEE
Q 034043 27 LKVKGQDGNEVFFRIKR-STQLKKLMNAYCDRQSV----ELNSIAFLFDGRRL--------RGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 27 I~v~~~~g~~~~~~ik~-tt~l~kL~~~y~~~~g~----~~~~~~F~fdG~~L--------~~~~Tp~dl~medgD~Idv 93 (105)
|.|.+.-.++=.|.+.. .. .|.++.+..=|+ +.+.+++.=+|+.. ...+...+.-|++||+|-|
T Consensus 153 V~V~GeV~~PG~y~l~~~~~---tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~V 229 (359)
T 2j58_A 153 VYVTGEVANSGKQAITNIPL---TVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFI 229 (359)
T ss_dssp EEEEESBSSCEEEECCSSCC---BHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEE
T ss_pred EEEEceecCCeEEEeCCCCC---cHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEE
Confidence 33334333334555555 33 566777776665 34677777777643 3344567788999999987
Q ss_pred Ee
Q 034043 94 ML 95 (105)
Q Consensus 94 ~~ 95 (105)
-.
T Consensus 230 p~ 231 (359)
T 2j58_A 230 PS 231 (359)
T ss_dssp CB
T ss_pred ee
Confidence 53
No 380
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=23.26 E-value=34 Score=19.37 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 21 TADDELSFKRGDILKVLNEE 40 (74)
T ss_dssp SSTTBCCBCTTCEEECCBCS
T ss_pred CCCCeeeEcCCCEEEEeEec
Confidence 46779999999999988665
No 381
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=23.23 E-value=85 Score=18.09 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=36.8
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccc--cCCCCCCEEEEEeeccC
Q 034043 38 FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDE--LEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 38 ~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~d--l~medgD~Idv~~~q~G 99 (105)
.-.|.+..| |++.|+....+-+.+||..+........ +-...++.|.+.+..-|
T Consensus 38 V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 93 (97)
T 2w4f_A 38 ISRVSEEGP--------AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRER 93 (97)
T ss_dssp EEEECTTSH--------HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCS
T ss_pred EEEECCCCh--------HHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCC
Confidence 345666655 5667898999999999999976443221 11247888888887654
No 382
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=23.23 E-value=45 Score=18.53 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=14.2
Q ss_pred ccccCCCCCCEEEEEee
Q 034043 80 PDELEMEDGDEIDAMLH 96 (105)
Q Consensus 80 p~dl~medgD~Idv~~~ 96 (105)
+.+|.+..||+|.|..+
T Consensus 21 ~~eLsf~~Gd~i~v~~~ 37 (70)
T 2vkn_A 21 AYEISFEQNEILQVSDI 37 (70)
T ss_dssp TTBCCBCTTCEEEEECT
T ss_pred CCcccCCCCCEEEEEEc
Confidence 45999999999998653
No 383
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=23.13 E-value=22 Score=27.74 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=28.9
Q ss_pred EEEEecCcHHHHHHHHHHHHhC--CCcccE--------EEEECCe--------ecCCCCCccccCCCCCCEEEEE
Q 034043 38 FFRIKRSTQLKKLMNAYCDRQS--VELNSI--------AFLFDGR--------RLRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 38 ~~~ik~tt~l~kL~~~y~~~~g--~~~~~~--------~F~fdG~--------~L~~~~Tp~dl~medgD~Idv~ 94 (105)
.+.+..+.+++.+.+.+|++.. +....+ +.+|+-. +-.-+.|..+|++++|++|.|.
T Consensus 344 ~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred eEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4455556678889999999754 433233 4455422 1123677899999999988764
No 384
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=22.92 E-value=99 Score=19.82 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=29.3
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCC
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV 60 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~ 60 (105)
...+.|+|.+.+..++.-.| |...+.+|....++..|+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqI-PpEe~L~l~~~l~e~~Gl 103 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREI-PPKRWLDFYAAMTEFLGL 103 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeC-ChHHHHHHHHHHHHhhce
Confidence 56889999998877665444 568888888888888874
No 385
>2gmq_A Hypothetical protein EF0006; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG, unknown function; HET: MSE; 1.76A {Enterococcus faecalis} SCOP: b.122.1.11
Probab=22.87 E-value=68 Score=20.50 Aligned_cols=54 Identities=17% Similarity=0.380 Sum_probs=41.1
Q ss_pred CcEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCC-cccEEEEECCeecCC
Q 034043 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE-LNSIAFLFDGRRLRG 76 (105)
Q Consensus 23 ~~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~-~~~~~F~fdG~~L~~ 76 (105)
..++++.++..|+-+.++++.+-+|.-+++.-.-..++. ...+.++=+|..|.-
T Consensus 21 K~~~~~W~G~~GrL~~ir~K~~r~~Em~~N~QiT~ENI~EI~~i~iiKNGKsL~L 75 (118)
T 2gmq_A 21 KDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNIIKNGKSLAL 75 (118)
T ss_dssp GGEEEEEGGGTSBEEEEEECHHHHHHHHHHTSSCTTTGGGCCEEEEEETTEEEEE
T ss_pred hhhheeeecccceEEEEEeeCCceeeehhhCCCChhhceeeeeeeeecCCcEEEE
Confidence 357788888888988999999988888877655555553 467788889987753
No 386
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=22.69 E-value=1.4e+02 Score=19.60 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=38.6
Q ss_pred EEEEec----CcHHHHHHHHHHHHhCCCc-------ccEEEEECCee-cCCCCCccccCCCCCCEEEEE
Q 034043 38 FFRIKR----STQLKKLMNAYCDRQSVEL-------NSIAFLFDGRR-LRGEQTPDELEMEDGDEIDAM 94 (105)
Q Consensus 38 ~~~ik~----tt~l~kL~~~y~~~~g~~~-------~~~~F~fdG~~-L~~~~Tp~dl~medgD~Idv~ 94 (105)
.++|.. ..+|..|.+...+++|-.. +..+++||=.. =.-..|..+|++.+|..|-|.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 355543 3489999988888887532 24566666332 235789999999998877665
No 387
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=22.33 E-value=1.2e+02 Score=19.29 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.8
Q ss_pred CCCcEEEEEEecCCCEEEEEEecCcH
Q 034043 21 QSAHINLKVKGQDGNEVFFRIKRSTQ 46 (105)
Q Consensus 21 ~~~~I~I~v~~~~g~~~~~~ik~tt~ 46 (105)
....-.|+|.......+.|+|+-|.+
T Consensus 25 ~~~~~~l~l~N~s~~~vaFKVKTT~p 50 (126)
T 1msp_A 25 DKHTYHIKITNAGGRRIGWAIKTTNM 50 (126)
T ss_dssp SCCCEEEEEEECSSSCEEEEEEESCT
T ss_pred cceEEEEEEECCCCCeEEEEEEcCCC
Confidence 34566788888877889999997765
No 388
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=22.16 E-value=90 Score=19.95 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=13.5
Q ss_pred CCeecCCCCCccccCCCCCCEEEE
Q 034043 70 DGRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 70 dG~~L~~~~Tp~dl~medgD~Idv 93 (105)
||++|.+.. -..|.+||+|.+
T Consensus 99 Ng~ri~~~~---~~~L~~GD~I~~ 119 (130)
T 4h87_A 99 NKTRIPPRT---YCRVHVGHVVRF 119 (130)
T ss_dssp TTEECCTTC---CEECCTTCEEEE
T ss_pred CCEECCCCc---eeECCCCCEEEE
Confidence 555554432 245899999975
No 389
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=22.15 E-value=1.3e+02 Score=17.84 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHH
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNA 53 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~ 53 (105)
.++|++...+|....+.+.+.++|......
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 467788767887788899998887666543
No 390
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=22.09 E-value=78 Score=25.33 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=21.6
Q ss_pred CCCccccCCCCCCEEEEEeeccCCCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGGAL 102 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (105)
...+.+|.++.||+|.|..+.-.|+.
T Consensus 453 a~~~dELs~~~GD~i~v~~~~~~gW~ 478 (526)
T 2de0_X 453 PRTADEIPMEPGDIIGVAGNHWDGYS 478 (526)
T ss_dssp CSSTTBCCBCTTCEEEEEEECSSSEE
T ss_pred CCCCCcCCcCCCCEEEEccccCCCee
Confidence 45788999999999999877767654
No 391
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.97 E-value=63 Score=18.26 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.3
Q ss_pred ccccCCCCCCEEEEEeecc
Q 034043 80 PDELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 80 p~dl~medgD~Idv~~~q~ 98 (105)
+.+|.++.||+|.|..+.-
T Consensus 28 ~~eLsf~~Gd~i~v~~~~~ 46 (76)
T 2csi_A 28 EAELTFCTGDIITVFGEID 46 (76)
T ss_dssp TTSCCCCTTCEEEEESSCC
T ss_pred CCcccCCCCCEEEEeEecC
Confidence 7899999999999987643
No 392
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=21.89 E-value=98 Score=16.19 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCCcccEEEEEC
Q 034043 47 LKKLMNAYCDRQSVELNSIAFLFD 70 (105)
Q Consensus 47 l~kL~~~y~~~~g~~~~~~~F~fd 70 (105)
.+.|.+.+++..|++.+.+...|.
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V~i~ 43 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVVFIE 43 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEE
Confidence 455677888889998877665553
No 393
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=21.76 E-value=48 Score=20.16 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=13.7
Q ss_pred CCeecCCCCCccccCCCCCCEEEE
Q 034043 70 DGRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 70 dG~~L~~~~Tp~dl~medgD~Idv 93 (105)
+|++|.. ...|.+||+|.+
T Consensus 74 ng~~i~~-----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 74 EGRKIEH-----QSTLSANQVVAL 92 (106)
T ss_dssp TTEECSS-----EEECCTTCCEEE
T ss_pred CCEECCC-----CeECCCCCEEEE
Confidence 7777765 346899998864
No 394
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=21.68 E-value=64 Score=20.26 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeec
Q 034043 78 QTPDELEMEDGDEIDAMLHQ 97 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q 97 (105)
..+.+|.++.||+|.|..+.
T Consensus 71 ~~~~eLsf~~Gd~i~vl~~~ 90 (119)
T 2rqr_A 71 SGAPQLSLQIGDVVRIQETC 90 (119)
T ss_dssp CSTTBCCBCTTCEEEEEEEE
T ss_pred CCCCcccCcCCCEEEEEEcC
Confidence 56788999999999998764
No 395
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=21.63 E-value=1.5e+02 Score=18.11 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=38.2
Q ss_pred EEEEEEecCc-HHH----HHHHHHHHHhCCCccc-EEE---EE-CCeecCCCCCccccCCCCCCEEEEEee
Q 034043 36 EVFFRIKRST-QLK----KLMNAYCDRQSVELNS-IAF---LF-DGRRLRGEQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 36 ~~~~~ik~tt-~l~----kL~~~y~~~~g~~~~~-~~F---~f-dG~~L~~~~Tp~dl~medgD~Idv~~~ 96 (105)
.+.+-.+... +.. .-...|.+..+...+. +.. .+ +|--|.+++...+. ++|.|.|.+..+
T Consensus 13 ~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~~~ 82 (85)
T 2ns5_A 13 RVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAVFD 82 (85)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEEEE
T ss_pred EEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEEec
Confidence 3445554432 344 4456788887774332 322 34 88899999999887 568888877654
No 396
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=21.45 E-value=1.7e+02 Score=22.24 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=35.7
Q ss_pred cCCCEEEEEEecCcHHHHHHHHHH--HHhCCCc---ccEEEEEC----C--eecCCCCCcccc
Q 034043 32 QDGNEVFFRIKRSTQLKKLMNAYC--DRQSVEL---NSIAFLFD----G--RRLRGEQTPDEL 83 (105)
Q Consensus 32 ~~g~~~~~~ik~tt~l~kL~~~y~--~~~g~~~---~~~~F~fd----G--~~L~~~~Tp~dl 83 (105)
.+|.-..+++..+++.+.|+...| .+.|+.. +-+-|.+. | ..|.++.+..+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 456666899999999999999999 5777532 33444331 2 566677666653
No 397
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=21.44 E-value=1e+02 Score=16.16 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCCCcccEEEEE
Q 034043 47 LKKLMNAYCDRQSVELNSIAFLF 69 (105)
Q Consensus 47 l~kL~~~y~~~~g~~~~~~~F~f 69 (105)
.+.|.+++++..|++.+.+...|
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~i 42 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVLI 42 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEE
Confidence 45567788888999877665444
No 398
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=21.41 E-value=51 Score=24.49 Aligned_cols=19 Identities=5% Similarity=0.260 Sum_probs=15.1
Q ss_pred EecCcHHHHHHHHHHHHhC
Q 034043 41 IKRSTQLKKLMNAYCDRQS 59 (105)
Q Consensus 41 ik~tt~l~kL~~~y~~~~g 59 (105)
+..+.++..+|+.|.+.+.
T Consensus 24 ~~~~~~v~~~F~~~~~~Ld 42 (298)
T 3axj_B 24 LDEDSPIVQQFRIYSNELI 42 (298)
T ss_dssp CCTTSHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHH
Confidence 5678899999999887654
No 399
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Probab=21.02 E-value=22 Score=19.99 Aligned_cols=23 Identities=35% Similarity=0.448 Sum_probs=17.9
Q ss_pred CCccccCCCCCCEEEEEeeccCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQTGG 100 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q~GG 100 (105)
..+.+|.+..||+|.|..+.-.|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~ 40 (71)
T 1hsq_A 18 QREDELTFIKSAIIQNVEKQEGG 40 (71)
T ss_dssp SSSSSCCCCTTCCCBSCCCBTTT
T ss_pred CCCCccCCCCCCEEEEEEecCCC
Confidence 45778999999999988765444
No 400
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}
Probab=20.80 E-value=78 Score=18.41 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=16.9
Q ss_pred CCCccccCCCCCCEEEEEee
Q 034043 77 EQTPDELEMEDGDEIDAMLH 96 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~ 96 (105)
...+.+|.+.-||+|.|..+
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~ 33 (90)
T 3reb_B 14 SWSPDDLSFQKGDQMVVLEE 33 (90)
T ss_dssp CSSTTBCCBCTTCEEEEEEC
T ss_pred cCCcCcCCCCCCCEEEEEEe
Confidence 35678999999999999876
No 401
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.77 E-value=1.3e+02 Score=17.16 Aligned_cols=69 Identities=12% Similarity=0.229 Sum_probs=43.4
Q ss_pred cEEEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCccc-c-CCCCCCEEEEEeec
Q 034043 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDE-L-EMEDGDEIDAMLHQ 97 (105)
Q Consensus 24 ~I~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~~Tp~d-l-~medgD~Idv~~~q 97 (105)
.+.+.....++...-+.|.+..+ ...+++.|+....+-..+||+.+........ + .+..++.|.+.+..
T Consensus 6 ~~~~~p~~~~g~~~G~~V~~~~~-----~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 76 (87)
T 2i6v_A 6 YVRLSQVKRDDKVLGYRVSPGKD-----PVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 76 (87)
T ss_dssp TEEEEEEEETTEEEEEEEEECSC-----HHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred ccceEEEeeCCeEEEEEEEeCCC-----CCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 34444444455544566666655 2255677999999999999999975332211 1 23467888777754
No 402
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=20.75 E-value=75 Score=18.01 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHhCCCcccEEEEECCeecCCCC--CccccCCCCCCEEEEEeeccC
Q 034043 55 CDRQSVELNSIAFLFDGRRLRGEQ--TPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 55 ~~~~g~~~~~~~F~fdG~~L~~~~--Tp~dl~medgD~Idv~~~q~G 99 (105)
|++.|+.....-+.+||..+.... ....+--..++.|.+.+..-|
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 86 (88)
T 2uzc_A 40 AAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES 86 (88)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence 556789889999999999997652 111111124788877775533
No 403
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=20.72 E-value=1.2e+02 Score=19.37 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=19.5
Q ss_pred CCcEEEEEEecCCCEEEEEEecCcH
Q 034043 22 SAHINLKVKGQDGNEVFFRIKRSTQ 46 (105)
Q Consensus 22 ~~~I~I~v~~~~g~~~~~~ik~tt~ 46 (105)
+..-.|++.......+.|+||-+++
T Consensus 24 gg~~~l~L~N~t~~~vAFKVKtT~p 48 (116)
T 1m1s_A 24 GGNSTHNITSESDSRLAFKVKSSNN 48 (116)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESCT
T ss_pred CCEEEEEEECCCCCeEEEEEEecCC
Confidence 3467788888877888999987765
No 404
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.68 E-value=81 Score=19.54 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=33.4
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHHHHHHHhCCCccc--EEEEECCeecCCCC
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS--IAFLFDGRRLRGEQ 78 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~~y~~~~g~~~~~--~~F~fdG~~L~~~~ 78 (105)
-.+|.+.+.. +.+-|- ...|+.|+.+-|++++++... +.+.-||-.|..++
T Consensus 11 pfkV~~~~Rs-~k~GV~-A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEe 63 (91)
T 2eel_A 11 PFRVSNHDRS-SRRGVM-ASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEE 63 (91)
T ss_dssp EEEEECTTSC-CCEEEE-ESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHH
T ss_pred CEEEecCCCC-eEEeEE-cCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechh
Confidence 3455554432 344444 368999999999999996434 44445798886543
No 405
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=20.62 E-value=67 Score=19.21 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=13.0
Q ss_pred CCeecCCCCCccccCCCCCCEEEE
Q 034043 70 DGRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 70 dG~~L~~~~Tp~dl~medgD~Idv 93 (105)
+|+++. ...|.+||+|.+
T Consensus 70 ng~~i~------~~~L~~gd~i~i 87 (100)
T 3po8_A 70 NNAPVQ------EWQLADGDVIRL 87 (100)
T ss_dssp TTEECS------EEECCTTCEEEE
T ss_pred CCEECc------eEECCCCCEEEE
Confidence 666664 356899999865
No 406
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=20.60 E-value=72 Score=20.71 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.6
Q ss_pred CCccccCCCCCCEEEEEeec-cCCC
Q 034043 78 QTPDELEMEDGDEIDAMLHQ-TGGA 101 (105)
Q Consensus 78 ~Tp~dl~medgD~Idv~~~q-~GG~ 101 (105)
..+.+|.+..||+|.|..+. -.|+
T Consensus 17 ~~~~ELsf~~Gd~i~Vl~~~~~~gW 41 (142)
T 2kbt_A 17 RDRSELSLKEGDIIKILNKKGQQGW 41 (142)
T ss_dssp SSSSBCCCCTTCEEEEEECCCSSSE
T ss_pred CCCCcCCCCCCCEEEEEEecCCCCe
Confidence 45779999999999998764 3443
No 407
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Probab=20.55 E-value=85 Score=21.13 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=20.1
Q ss_pred CCCccccCCCCCCEEEEEeeccCCC
Q 034043 77 EQTPDELEMEDGDEIDAMLHQTGGA 101 (105)
Q Consensus 77 ~~Tp~dl~medgD~Idv~~~q~GG~ 101 (105)
...+.+|.+..||+|.|..+.-.|+
T Consensus 22 ~~~~~eLs~~~Gd~i~vl~~~~~gW 46 (193)
T 1ng2_A 22 KTSGSEMALSTGDVVEVVEKSESGW 46 (193)
T ss_dssp CSSTTCCCBCTTCEEEEEECCTTSC
T ss_pred CCCCCcCCCCCCCEEEEEEecCCCe
Confidence 3567899999999999998765554
No 408
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=20.42 E-value=1.6e+02 Score=19.39 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=17.9
Q ss_pred CcHHHHHHHHHHHHhCCCcccE
Q 034043 44 STQLKKLMNAYCDRQSVELNSI 65 (105)
Q Consensus 44 tt~l~kL~~~y~~~~g~~~~~~ 65 (105)
--.+..++.+||+..|+.++.+
T Consensus 133 ~~~~~~~~~~~~~~~g~~~~~~ 154 (159)
T 3ebr_A 133 WKTSMDRYLNYCKAHGIRPKDL 154 (159)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcccc
Confidence 3477888999999999987654
No 409
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=20.36 E-value=99 Score=17.59 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=35.4
Q ss_pred EEEEEecCcHHHHHHHHHHHHhCCCcccEEEEECCeecCCC--CCccccCCCCCCEEEEEeeccC
Q 034043 37 VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE--QTPDELEMEDGDEIDAMLHQTG 99 (105)
Q Consensus 37 ~~~~ik~tt~l~kL~~~y~~~~g~~~~~~~F~fdG~~L~~~--~Tp~dl~medgD~Idv~~~q~G 99 (105)
+.-.|.+..| |.+.|+.....-+.+||..+... .....+--..++.|.+.+...+
T Consensus 31 ~V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 87 (90)
T 2he4_A 31 YIRSVDPGSP--------AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 87 (90)
T ss_dssp EEEEECTTSH--------HHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCC
T ss_pred EEEEECCCCh--------HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccC
Confidence 3445666555 56678988999999999999764 2222221223788877766543
No 410
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=20.18 E-value=48 Score=21.65 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=13.5
Q ss_pred CCeecCCCCCccccCCCCCCEEEE
Q 034043 70 DGRRLRGEQTPDELEMEDGDEIDA 93 (105)
Q Consensus 70 dG~~L~~~~Tp~dl~medgD~Idv 93 (105)
||++|... ...|.+||+|.+
T Consensus 92 Ng~~i~~~----~~~L~~GD~I~l 111 (151)
T 2jqj_A 92 NGNRLVKK----DYILKNGDRIVF 111 (151)
T ss_dssp TTEECCSS----CEEECSSEEEEE
T ss_pred CCEEcCCC----ceECCCCCEEEE
Confidence 56666543 456889998865
No 411
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=20.10 E-value=61 Score=18.97 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=16.9
Q ss_pred CCcc-ccCCCCCCEEEEEeecc
Q 034043 78 QTPD-ELEMEDGDEIDAMLHQT 98 (105)
Q Consensus 78 ~Tp~-dl~medgD~Idv~~~q~ 98 (105)
..+. +|.++.||+|.|..+.-
T Consensus 26 ~~~~~eLsf~~Gd~i~v~~~~~ 47 (92)
T 1jqq_A 26 ENPEMEVALKKGDLMAILSKKD 47 (92)
T ss_dssp SSTTTBCCBCTTCEEEEEEEEC
T ss_pred CCCCCCcCCCCCCEEEEEECCC
Confidence 3455 89999999999987754
No 412
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=20.01 E-value=1.4e+02 Score=17.98 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.5
Q ss_pred EEEEEecCCCEEEEEEecCcHHHHHHH
Q 034043 26 NLKVKGQDGNEVFFRIKRSTQLKKLMN 52 (105)
Q Consensus 26 ~I~v~~~~g~~~~~~ik~tt~l~kL~~ 52 (105)
+|.+++.+|....+.+....+|.....
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 467778899988999999888777654
Done!