BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034046
MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF
YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE

High Scoring Gene Products

Symbol, full name Information P value
AT1G05780 protein from Arabidopsis thaliana 4.7e-32
AT2G31710 protein from Arabidopsis thaliana 4.2e-31
VMA21
Integral membrane protein that is required for V-ATPase function
gene from Saccharomyces cerevisiae 0.00093

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034046
        (105 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2198703 - symbol:AT1G05780 "AT1G05780" species...   351  4.7e-32   1
TAIR|locus:2065903 - symbol:AT2G31710 "AT2G31710" species...   342  4.2e-31   1
SGD|S000003337 - symbol:VMA21 "Integral membrane protein ...    84  0.00093   1


>TAIR|locus:2198703 [details] [associations]
            symbol:AT1G05780 "AT1G05780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002684 GenomeReviews:CT485782_GR
            InterPro:IPR019013 Pfam:PF09446 EMBL:AY954753 IPI:IPI00544948
            RefSeq:NP_172069.1 UniGene:At.49859 EnsemblPlants:AT1G05780.1
            GeneID:837086 KEGG:ath:AT1G05780 TAIR:At1g05780 eggNOG:NOG276379
            HOGENOM:HOG000030849 InParanoid:Q58G56 OMA:MAMKETP PhylomeDB:Q58G56
            ProtClustDB:CLSN2682248 Genevestigator:Q58G56 Uniprot:Q58G56
        Length = 106

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 71/106 (66%), Positives = 85/106 (80%)

Query:     1 MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
             MA V+ KF IASMFMW+ P+AILY FNHNLLPGST L+P+S  LLSGFLAV+SVN VI F
Sbjct:     1 MAGVMHKFLIASMFMWILPVAILYGFNHNLLPGSTTLSPHSLILLSGFLAVVSVNTVIVF 60

Query:    61 YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSE-SLKKKE 105
             YI MAM+EP+DKH+PD  FLAEAK SV++ T  A  S + +LKK+E
Sbjct:    61 YICMAMKEPADKHKPDAAFLAEAKDSVNKLTKGATSSDDHALKKQE 106


>TAIR|locus:2065903 [details] [associations]
            symbol:AT2G31710 "AT2G31710" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC007071
            InterPro:IPR019013 Pfam:PF09446 HOGENOM:HOG000030849
            ProtClustDB:CLSN2682248 EMBL:AY088513 EMBL:BT024559 IPI:IPI00541593
            PIR:B84724 RefSeq:NP_565728.1 UniGene:At.43634 PRIDE:Q9SIN7
            EnsemblPlants:AT2G31710.1 GeneID:817727 KEGG:ath:AT2G31710
            TAIR:At2g31710 eggNOG:NOG330704 InParanoid:Q9SIN7 OMA:MWILPIA
            PhylomeDB:Q9SIN7 ArrayExpress:Q9SIN7 Genevestigator:Q9SIN7
            Uniprot:Q9SIN7
        Length = 105

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 65/105 (61%), Positives = 85/105 (80%)

Query:     1 MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
             MA V++KF IASMFMW+ P+AILY FN++LLPGST L+P+S TLLSGFLAV+SVN+VI F
Sbjct:     1 MAGVMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVF 60

Query:    61 YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
             YI +A++EP+DKH+PD  F+AEAK SV + T     +  +LKK+E
Sbjct:    61 YICLALKEPADKHKPDASFVAEAKDSVKKLTSGVTNTDPALKKQE 105


>SGD|S000003337 [details] [associations]
            symbol:VMA21 "Integral membrane protein that is required for
            V-ATPase function" species:4932 "Saccharomyces cerevisiae"
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment
            membrane" evidence=IEA] [GO:0012507 "ER to Golgi transport vesicle
            membrane" evidence=IEA] [GO:0005789 "endoplasmic reticulum
            membrane" evidence=IEA;IDA] [GO:0070072 "vacuolar
            proton-transporting V-type ATPase complex assembly"
            evidence=IMP;IPI] [GO:0003674 "molecular_function" evidence=ND]
            SGD:S000003337 GO:GO:0016021 GO:GO:0012507 EMBL:BK006941
            GO:GO:0005789 GO:GO:0070072 GO:GO:0033116 KO:K13535
            RefSeq:NP_011625.3 GeneID:853007 KEGG:sce:YGR110W
            RefSeq:NP_011619.3 GeneID:852997 KEGG:sce:YGR105W
            InterPro:IPR019013 Pfam:PF09446 eggNOG:NOG140611
            HOGENOM:HOG000234560 OrthoDB:EOG470XT4 EMBL:U09329 EMBL:Z72890
            EMBL:AY557816 PIR:S47941 ProteinModelPortal:P41806 DIP:DIP-5526N
            IntAct:P41806 MINT:MINT-496678 STRING:P41806 PaxDb:P41806
            EnsemblFungi:YGR105W CYGD:YGR105w OMA:QYLFSNN NextBio:972836
            Genevestigator:P41806 GermOnline:YGR105W Uniprot:P41806
        Length = 77

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query:     1 MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
             MA  V +  I  + ++ A + +L      ++      TP   TL+SG LA    N+V+  
Sbjct:     1 MAVDVPRAVINKLMLFTAAMVVLPVLTFFIIQ---QFTPN--TLISGGLAAAMANVVLIV 55

Query:    61 YIYMAMREPSDKHEPD 76
             YI +A RE ++ H+ D
Sbjct:    56 YIVVAFREDTEDHKVD 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.39    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  508 (54 KB)
  Total size of DFA:  101 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.84u 0.11s 11.95t   Elapsed:  00:00:01
  Total cpu time:  11.84u 0.11s 11.95t   Elapsed:  00:00:01
  Start:  Mon May 20 15:22:25 2013   End:  Mon May 20 15:22:26 2013

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