Query 034046
Match_columns 105
No_of_seqs 103 out of 150
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:30:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dw3_A Intrinsic membrane prot 33.0 70 0.0024 20.8 4.3 34 44-77 27-64 (77)
2 3arc_I Photosystem II reaction 27.9 81 0.0028 18.0 3.5 19 5-23 3-21 (38)
3 2nrg_A Intrinsic membrane prot 24.5 1E+02 0.0034 20.3 3.9 33 45-77 29-65 (82)
4 2nwl_A GLTPH, glutamate sympor 22.9 3E+02 0.01 22.1 7.5 76 2-86 191-268 (422)
5 4hkr_A Calcium release-activat 18.5 3E+02 0.01 20.9 6.0 43 13-66 124-166 (214)
6 4b4a_A TATC, SEC-independent p 13.7 4.1E+02 0.014 19.8 8.0 32 4-36 63-94 (249)
7 2zt9_E Cytochrome B6-F complex 13.0 1.9E+02 0.0066 15.6 4.4 25 4-28 3-27 (31)
8 4ev6_A Magnesium transport pro 12.4 4.6E+02 0.016 19.7 6.1 33 2-36 276-308 (339)
9 4gib_A Beta-phosphoglucomutase 12.2 1.2E+02 0.0041 20.9 2.2 32 67-98 163-197 (250)
10 2k9j_B Integrin beta-3; transm 11.7 2.3E+02 0.008 15.8 3.8 24 43-66 8-31 (43)
No 1
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=33.05 E-value=70 Score=20.80 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCCCH
Q 034046 44 LLSGFLAVISVN----IVIAFYIYMAMREPSDKHEPDP 77 (105)
Q Consensus 44 ~ysgi~AVv~vN----vVL~~YI~~A~~Ed~~~~~~d~ 77 (105)
+++++.|++..- +++++|.+=-+.-+++.+.|||
T Consensus 27 lkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~P 64 (77)
T 2dw3_A 27 MKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAP 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSSC
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCC
Confidence 455555554433 3444444444444444555554
No 2
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=27.88 E-value=81 Score=17.99 Aligned_cols=19 Identities=11% Similarity=0.175 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034046 5 VKKFFIASMFMWMAPLAIL 23 (105)
Q Consensus 5 i~KLl~fSiaM~~lPl~~f 23 (105)
..|+++|++..+.+.+-+|
T Consensus 3 tLKi~Vy~vV~ffvsLFiF 21 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFVF 21 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHHHHc
Confidence 5799999998888877665
No 3
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=24.50 E-value=1e+02 Score=20.30 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=15.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCCCH
Q 034046 45 LSGFLAVISV----NIVIAFYIYMAMREPSDKHEPDP 77 (105)
Q Consensus 45 ysgi~AVv~v----NvVL~~YI~~A~~Ed~~~~~~d~ 77 (105)
++++.|++.. -+++++|.+=-+.-+++.+.|||
T Consensus 29 KGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~P 65 (82)
T 2nrg_A 29 KGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAP 65 (82)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSSS
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCC
Confidence 4444444433 34444555444444445555655
No 4
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=22.86 E-value=3e+02 Score=22.09 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCccchHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCCCCCCHHH
Q 034046 2 AAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVI--AFYIYMAMREPSDKHEPDPKF 79 (105)
Q Consensus 2 ~~Vi~KLl~fSiaM~~lPl~~fF~~~~~lf~g~~~ls~~~~t~ysgi~AVv~vNvVL--~~YI~~A~~Ed~~~~~~d~~~ 79 (105)
++++.|++-+ .|...|++.|...-+.+-. .+++.- ..+.--++.+....++. +.|-...+. ..+.+.++
T Consensus 191 ~~v~~kiv~~--im~laPigvf~lia~~~~~--~g~~~l-~~l~~~i~~~~~~~~i~~~vv~~~~~~~----~~~np~~~ 261 (422)
T 2nwl_A 191 AEAMYKIVNG--VMQYAPIGVFALIAYVMAE--QGVHVV-GELAKVTAAVYVGLTLQILLVYFVLLKI----YGIDPISF 261 (422)
T ss_dssp HHHHHHHHHH--HTTSHHHHHHHHHHHHHTT--TGGGCC-THHHHHHHHHHHHHHHHHHHTHHHHHHH----TTCCHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCHHHH
Confidence 4566777665 6899999999887776532 222211 12222233333333332 223222321 13567778
Q ss_pred HHHHhhh
Q 034046 80 LAEAKAS 86 (105)
Q Consensus 80 ~~~a~~s 86 (105)
+.+.+..
T Consensus 262 ~k~~~~a 268 (422)
T 2nwl_A 262 IKHAKDA 268 (422)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=18.54 E-value=3e+02 Score=20.93 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 034046 13 MFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAM 66 (105)
Q Consensus 13 iaM~~lPl~~fF~~~~~lf~g~~~ls~~~~t~ysgi~AVv~vNvVL~~YI~~A~ 66 (105)
+..|.+=++..++.+-| ... ..|+..|.+..--|++.|++.|+
T Consensus 124 i~LFL~evall~WVKF~---~~~--------~~aa~~~t~vliPv~i~F~~Fa~ 166 (214)
T 4hkr_A 124 LILFLLEIAILCWVKFY---DLS--------RRAAWSATVVLIPVMIIFMAFAI 166 (214)
T ss_dssp HHHHHHHHHHHHHHHHT---TTC--------HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhheEEee---cCC--------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677776643 111 25777777777777777777664
No 6
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=13.70 E-value=4.1e+02 Score=19.78 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 034046 4 VVKKFFIASMFMWMAPLAILYAFNHNLLPGSTN 36 (105)
Q Consensus 4 Vi~KLl~fSiaM~~lPl~~fF~~~~~lf~g~~~ 36 (105)
+-.|+-++..+.+..|+..|.... .+-||...
T Consensus 63 ~~lkvs~~~g~~~a~P~ilyQiw~-Fi~PgLy~ 94 (249)
T 4b4a_A 63 ILIKISLAVGFIIASPVILYQFWR-FIEPALYS 94 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHTTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhccccH
Confidence 456889999999999999998874 45577665
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=12.99 E-value=1.9e+02 Score=15.62 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 034046 4 VVKKFFIASMFMWMAPLAILYAFNH 28 (105)
Q Consensus 4 Vi~KLl~fSiaM~~lPl~~fF~~~~ 28 (105)
++.-.+.|=..++.+-.+.||+.+.
T Consensus 3 ~~i~y~~~l~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 3 AIVAYIGFLALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888999999874
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=12.39 E-value=4.6e+02 Score=19.65 Aligned_cols=33 Identities=6% Similarity=-0.078 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 034046 2 AAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTN 36 (105)
Q Consensus 2 ~~Vi~KLl~fSiaM~~lPl~~fF~~~~~lf~g~~~ 36 (105)
+.++++|-+.| .+.+|+...-+.+..=|++...
T Consensus 276 N~~mk~LTiit--~IflP~T~IaGiyGMNf~~mPe 308 (339)
T 4ev6_A 276 NQIMKILTMVT--TIFAVPMWITGIYGMNFSYLPL 308 (339)
T ss_dssp HHHHHHHHHHH--HHSSHHHHHHHHTTCCCSCCTT
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhhccCcCCCCCC
Confidence 44566655544 4556665544433322444433
No 9
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=12.21 E-value=1.2e+02 Score=20.94 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=23.2
Q ss_pred cCCCCCCCCCHHHHHHHhhhcCCCCcc---ccCCh
Q 034046 67 REPSDKHEPDPKFLAEAKASVSQPTDK---AEVSS 98 (105)
Q Consensus 67 ~Ed~~~~~~d~~~~~~a~~s~~~~~~~---~~~~~ 98 (105)
.|+...+||+|+.+.+|-+.++-+..+ ++|+.
T Consensus 163 ~~~~~~~KP~p~~~~~a~~~lg~~p~e~l~VGDs~ 197 (250)
T 4gib_A 163 AGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDAS 197 (250)
T ss_dssp GGGCCSCTTSSHHHHHHHHHHTCCGGGEEEEESSH
T ss_pred ccccCCCCCcHHHHHHHHHHhCCChHHeEEECCCH
Confidence 456678999999999998888755433 45543
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=11.72 E-value=2.3e+02 Score=15.85 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034046 43 TLLSGFLAVISVNIVIAFYIYMAM 66 (105)
Q Consensus 43 t~ysgi~AVv~vNvVL~~YI~~A~ 66 (105)
+..+-+..+++.-+.+++.++..|
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHH
Confidence 344444455555455555555555
Done!