Query 034046
Match_columns 105
No_of_seqs 103 out of 150
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 15:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034046.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034046hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 25.9 87 0.0063 20.8 6.2 69 15-87 88-157 (222)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 19.4 1.5E+02 0.011 21.2 6.7 19 12-30 188-206 (405)
3 d1o08a_ c.108.1.6 (A:) beta-Ph 13.8 66 0.0048 19.7 2.9 28 66-93 137-164 (221)
4 d2axti1 f.23.37.1 (I:1-35) Pho 10.3 1.2E+02 0.0089 15.5 3.1 18 6-23 4-21 (35)
5 d1xmeb2 f.17.2.1 (B:3-36) Bact 9.6 1.3E+02 0.0092 15.1 2.9 13 8-20 16-28 (34)
6 d2b0ca1 c.108.1.2 (A:8-204) Pu 8.7 59 0.0043 18.8 1.2 27 66-92 133-159 (197)
7 d1zrna_ c.108.1.1 (A:) L-2-Hal 8.3 84 0.0061 19.1 1.9 25 68-92 143-167 (220)
8 d1te2a_ c.108.1.6 (A:) Phospha 8.2 1.2E+02 0.0089 18.3 2.7 25 68-92 138-162 (218)
9 d1qq5a_ c.108.1.1 (A:) L-2-Hal 7.7 94 0.0069 19.1 1.9 26 68-93 141-166 (245)
10 d2gmwa1 c.108.1.19 (A:24-205) 7.7 1.1E+02 0.0078 19.0 2.2 24 67-90 101-124 (182)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=25.85 E-value=87 Score=20.76 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCHHHHHHHhhhc
Q 034046 15 MWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMRE-PSDKHEPDPKFLAEAKASV 87 (105)
Q Consensus 15 M~~lPl~~fF~~~~~lf~g~~~ls~~~~t~ysgi~AVv~vNvVL~~YI~~A~~E-d~~~~~~d~~~~~~a~~s~ 87 (105)
|.++|++..-..-...+.|. +.+.....|++..++.-+--...++--++| ..++.++..+-+.+|-.+.
T Consensus 88 ~~~ipl~~~~~~~~l~~~g~----~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~ 157 (222)
T d1iwga8 88 MLVVPLGVIGALLAATFRGL----TNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMR 157 (222)
T ss_dssp GGHHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCC----chhhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHH
Confidence 45667776644332222221 122233344444444433334444444555 3344444445555554443
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.40 E-value=1.5e+02 Score=21.17 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 034046 12 SMFMWMAPLAILYAFNHNL 30 (105)
Q Consensus 12 SiaM~~lPl~~fF~~~~~l 30 (105)
...|...|++.|-..-+.+
T Consensus 188 ~~im~laPigvf~l~a~~~ 206 (405)
T d2nwwa1 188 NGVMQYAPIGVFALIAYVM 206 (405)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578889999987766544
No 3
>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}
Probab=13.78 E-value=66 Score=19.74 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=22.1
Q ss_pred hcCCCCCCCCCHHHHHHHhhhcCCCCcc
Q 034046 66 MREPSDKHEPDPKFLAEAKASVSQPTDK 93 (105)
Q Consensus 66 ~~Ed~~~~~~d~~~~~~a~~s~~~~~~~ 93 (105)
..++....||+|+.+.+|-...+-+..+
T Consensus 137 ~~~~~~~~KP~~~~~~~~l~~~~i~~~~ 164 (221)
T d1o08a_ 137 DPAEVAASKPAPDIFIAAAHAVGVAPSE 164 (221)
T ss_dssp CTTTSSSCTTSTHHHHHHHHHTTCCGGG
T ss_pred ccccccccccChHHHHHHHHHcCCCCce
Confidence 3456678899999999999988876543
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.31 E-value=1.2e+02 Score=15.52 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034046 6 KKFFIASMFMWMAPLAIL 23 (105)
Q Consensus 6 ~KLl~fSiaM~~lPl~~f 23 (105)
.|+++|++..+.+-+-+|
T Consensus 4 LKi~Vy~vV~fFv~lFiF 21 (35)
T d2axti1 4 LKITVYIVVTFFVLLFVF 21 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEehhhHHHHHHHHHHH
Confidence 577888887776665554
No 5
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=9.59 E-value=1.3e+02 Score=15.15 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 034046 8 FFIASMFMWMAPL 20 (105)
Q Consensus 8 Ll~fSiaM~~lPl 20 (105)
.+.||++|..+=+
T Consensus 16 wlafslamlfvfi 28 (34)
T d1xmeb2 16 WLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678888865543
No 6
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}
Probab=8.75 E-value=59 Score=18.83 Aligned_cols=27 Identities=4% Similarity=0.154 Sum_probs=21.3
Q ss_pred hcCCCCCCCCCHHHHHHHhhhcCCCCc
Q 034046 66 MREPSDKHEPDPKFLAEAKASVSQPTD 92 (105)
Q Consensus 66 ~~Ed~~~~~~d~~~~~~a~~s~~~~~~ 92 (105)
..|+...+||+|+....+....+-+..
T Consensus 133 ~s~~~~~~Kp~~~~~~~~~~~~~~~~~ 159 (197)
T d2b0ca1 133 LSQDLGMRKPEARIYQHVLQAEGFSPS 159 (197)
T ss_dssp EHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred ecccccccccchHHHHHHHHhcCCCCC
Confidence 345667889999999999998876543
No 7
>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}
Probab=8.34 E-value=84 Score=19.05 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.9
Q ss_pred CCCCCCCCCHHHHHHHhhhcCCCCc
Q 034046 68 EPSDKHEPDPKFLAEAKASVSQPTD 92 (105)
Q Consensus 68 Ed~~~~~~d~~~~~~a~~s~~~~~~ 92 (105)
++....||+|+.+.+|...++-+..
T Consensus 143 ~~~~~~KP~p~~~~~~~~~~g~~p~ 167 (220)
T d1zrna_ 143 DPVQVYKPDNRVYELAEQALGLDRS 167 (220)
T ss_dssp GGGTCCTTSHHHHHHHHHHHTSCGG
T ss_pred eeeeccccHHHHHHHHHHHhCCCCc
Confidence 3557789999999999999875443
No 8
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}
Probab=8.21 E-value=1.2e+02 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.1
Q ss_pred CCCCCCCCCHHHHHHHhhhcCCCCc
Q 034046 68 EPSDKHEPDPKFLAEAKASVSQPTD 92 (105)
Q Consensus 68 Ed~~~~~~d~~~~~~a~~s~~~~~~ 92 (105)
|+....||+|+.+.++-...+-+..
T Consensus 138 ~~~~~~Kp~~~~~~~~~~~l~~~~~ 162 (218)
T d1te2a_ 138 EKLPYSKPHPQVYLDCAAKLGVDPL 162 (218)
T ss_dssp TTSSCCTTSTHHHHHHHHHHTSCGG
T ss_pred cccccchhhHHHHHHHHHHcCCCch
Confidence 4567889999999999888876553
No 9
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}
Probab=7.74 E-value=94 Score=19.10 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=20.0
Q ss_pred CCCCCCCCCHHHHHHHhhhcCCCCcc
Q 034046 68 EPSDKHEPDPKFLAEAKASVSQPTDK 93 (105)
Q Consensus 68 Ed~~~~~~d~~~~~~a~~s~~~~~~~ 93 (105)
++....||+|+...+|-+.++-+..+
T Consensus 141 ~~~~~~KP~p~~f~~a~~~lg~~p~e 166 (245)
T d1qq5a_ 141 DAKRVFKPHPDSYALVEEVLGVTPAE 166 (245)
T ss_dssp GGGTCCTTSHHHHHHHHHHHCCCGGG
T ss_pred ccccccCccHHHHHHHHHHhCCChhh
Confidence 44567899999999998888765543
No 10
>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}
Probab=7.72 E-value=1.1e+02 Score=18.96 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=19.1
Q ss_pred cCCCCCCCCCHHHHHHHhhhcCCC
Q 034046 67 REPSDKHEPDPKFLAEAKASVSQP 90 (105)
Q Consensus 67 ~Ed~~~~~~d~~~~~~a~~s~~~~ 90 (105)
+++..-+||+|+.+.+|-...+-.
T Consensus 101 ~~~~~~rKP~p~m~~~~~~~~~i~ 124 (182)
T d2gmwa1 101 RQVCDCRKPHPGMLLSARDYLHID 124 (182)
T ss_dssp BSCCSSSTTSCHHHHHHHHHHTBC
T ss_pred cccccccCCccccccchhhhcccc
Confidence 455566899999999998888753
Done!