BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034047
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|H Chain H, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|U Chain U, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|H Chain H, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|U Chain U, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|H Chain H, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|U Chain U, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|H Chain H, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|U Chain U, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|H Chain H, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|U Chain U, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|H Chain H, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|U Chain U, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|H Chain H, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|U Chain U, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|H Chain H, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|U Chain U, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|H Chain H, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|U Chain U, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|H Chain H, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|U Chain U, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|H Chain H, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|U Chain U, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|H Chain H, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|U Chain U, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|H Chain H, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|U Chain U, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 77
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E C R+ + + CT + FD+L D CVA K
Sbjct: 12 LVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHK 71
Query: 100 LFTQLK 105
LF +LK
Sbjct: 72 LFNKLK 77
>pdb|1BCC|H Chain H, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|H Chain H, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|H Chain H, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 78
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E C +R+ + + CT + FD+L D CVA K
Sbjct: 13 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHK 72
Query: 100 LFTQLK 105
LF LK
Sbjct: 73 LFNSLK 78
>pdb|1BGY|H Chain H, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|T Chain T, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|H Chain H, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|H Chain H, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|H Chain H, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|H Chain H, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|H Chain H, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|HH Chain h, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 78
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E C +R+ + + CT + D+L D CVA K
Sbjct: 13 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 72
Query: 100 LFTQLK 105
LF LK
Sbjct: 73 LFNSLK 78
>pdb|1QCR|H Chain H, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 60
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 55 PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQL 104
KCVK+ E C +R+ + + CT + D+L D CVA KLF L
Sbjct: 11 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSL 60
>pdb|3CX5|F Chain F, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|Q Chain Q, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|F Chain F, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|Q Chain Q, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 146
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 59 KSLIE-YEACIKRIE--------ADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK 105
K+L+ YE C +R++ AD + C ++F +D AP+LF +LK
Sbjct: 91 KALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK 146
>pdb|1EZV|H Chain H, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KB9|F Chain F, Yeast Cytochrome Bc1 Complex
pdb|1P84|F Chain F, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|H Chain H, Yeast Cytochrome Bc1 Complex With Stigmatellin
Length = 74
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 59 KSLIE-YEACIKRIE--------ADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK 105
K+L+ YE C +R++ AD + C ++F +D AP+LF +LK
Sbjct: 19 KALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK 74
>pdb|1KYO|F Chain F, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|Q Chain Q, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 74
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 59 KSLIE-YEACIKRIE--------ADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK 105
K+L+ YE C +R++ AD + C ++F +D AP+LF +LK
Sbjct: 19 KALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK 74
>pdb|3DZM|A Chain A, Crystal Structure Of A Major Outer Membrane Protein From
Thermus Thermophilus Hb27
pdb|3DZM|B Chain B, Crystal Structure Of A Major Outer Membrane Protein From
Thermus Thermophilus Hb27
pdb|3DZM|C Chain C, Crystal Structure Of A Major Outer Membrane Protein From
Thermus Thermophilus Hb27
Length = 214
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 64 YEACIKRIEADDTGSK 79
++AC R+E DD+G+K
Sbjct: 163 FQACFTRVEEDDSGNK 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,161,557
Number of Sequences: 62578
Number of extensions: 113072
Number of successful extensions: 304
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 10
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)