BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034047
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2
Length = 69
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 55/69 (79%)
Query: 37 MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
M+DEE+ DPK LE +CKPKCV+ L EY+AC KR+E D++G KHCTGQYFDY C+DKCV
Sbjct: 1 MSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCV 60
Query: 97 APKLFTQLK 105
A KLF LK
Sbjct: 61 AAKLFDHLK 69
>sp|Q1ZXP3|QCR6_DICDI Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium
discoideum GN=uqcrh PE=3 SV=1
Length = 69
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 46 KKYLEEACKPKCVKSLIEYEACIKRIEADDTGSK-HCTGQYFDYLSCVDKCVAPKLFTQL 104
K ++E C C KS Y+AC R+ + K +C GQ+ +++ C+DKCV PKLF QL
Sbjct: 9 KGPIQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQL 68
Query: 105 K 105
K
Sbjct: 69 K 69
>sp|Q5M9I5|QCR6_RAT Cytochrome b-c1 complex subunit 6, mitochondrial OS=Rattus
norvegicus GN=Uqcrh PE=3 SV=1
Length = 89
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E+C +R+ + + CT + FD+L D CVA K
Sbjct: 24 LVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83
Query: 100 LFTQLK 105
LF LK
Sbjct: 84 LFKSLK 89
>sp|P07919|QCR6_HUMAN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Homo sapiens
GN=UQCRH PE=1 SV=2
Length = 91
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E C +R+ + + CT + FD+L D CVA K
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHCVAHK 85
Query: 100 LFTQLK 105
LF LK
Sbjct: 86 LFNNLK 91
>sp|P99028|QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochondrial OS=Mus musculus
GN=Uqcrh PE=1 SV=2
Length = 89
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E C R+ + + CT + FD+L D CVA K
Sbjct: 24 LVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83
Query: 100 LFTQLK 105
LF LK
Sbjct: 84 LFKNLK 89
>sp|Q8SPH5|QCR6_MACFA Cytochrome b-c1 complex subunit 6, mitochondrial OS=Macaca
fascicularis GN=UQCRH PE=3 SV=1
Length = 91
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E C KR+ + + CT + D+L D CVA K
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDKRVSSRSRTEEDCTEELLDFLHARDHCVAYK 85
Query: 100 LFTQLK 105
LF LK
Sbjct: 86 LFNNLK 91
>sp|P00126|QCR6_BOVIN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Bos taurus
GN=UQCRH PE=1 SV=2
Length = 91
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
+ DP + E C+ KCVK+ E C +R+ + + CT + D+L D CVA K
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 85
Query: 100 LFTQLK 105
LF LK
Sbjct: 86 LFNSLK 91
>sp|O27427|PURL_METTH Phosphoribosylformylglycinamidine synthase 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=purL PE=3 SV=1
Length = 714
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 3 CKSYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLI 62
C+ YEL +VIG V +T + S V + + +ADP EA KP+ + +
Sbjct: 319 CRKYELPAAVIGEVTDTGRMIVESEGE---VIADLPAKLLADPPVVEREARKPQLPEGQV 375
Query: 63 EY------EACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAP 98
E + +K I + + SK + +D+ + V P
Sbjct: 376 EVKHPPLKDTLLKLISSPNIASKRWVYRQYDHEVQIRTVVKP 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,622,026
Number of Sequences: 539616
Number of extensions: 1432877
Number of successful extensions: 2657
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2649
Number of HSP's gapped (non-prelim): 14
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)