Query 034047
Match_columns 105
No_of_seqs 103 out of 234
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02320 UCR_hinge: Ubiquinol- 100.0 8.5E-34 1.8E-38 185.6 4.6 63 43-105 1-65 (65)
2 KOG4763 Ubiquinol-cytochrome c 100.0 2.1E-30 4.6E-35 174.4 5.4 70 36-105 6-77 (77)
3 PF05254 UPF0203: Uncharacteri 93.0 0.13 2.9E-06 33.9 3.3 41 55-95 7-52 (68)
4 KOG3481 Uncharacterized conser 91.5 0.26 5.5E-06 34.5 3.3 42 55-96 11-57 (87)
5 PLN03079 Uncharacterized prote 90.8 0.31 6.7E-06 34.3 3.2 41 55-95 16-61 (91)
6 PF10200 Ndufs5: NADH:ubiquino 77.7 2.6 5.7E-05 29.7 2.8 39 55-94 31-69 (96)
7 PF08583 Cmc1: Cytochrome c ox 41.1 33 0.00071 21.1 2.6 47 47-95 3-49 (69)
8 KOG4110 NADH:ubiquinone oxidor 39.8 20 0.00043 26.4 1.6 36 57-93 36-71 (120)
9 PF05811 DUF842: Eukaryotic pr 39.7 27 0.00059 25.1 2.3 38 66-105 83-128 (131)
10 PF12650 DUF3784: Domain of un 31.7 15 0.00032 24.5 -0.1 17 25-42 18-34 (97)
11 COG5050 EPT1 sn-1,2-diacylglyc 30.6 20 0.00043 30.9 0.5 25 71-97 100-124 (384)
12 PF14233 DUF4335: Domain of un 28.1 27 0.00059 26.7 0.8 17 82-98 117-133 (189)
No 1
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=100.00 E-value=8.5e-34 Score=185.63 Aligned_cols=63 Identities=46% Similarity=1.012 Sum_probs=57.2
Q ss_pred CChhHHHHHHh--HhhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047 43 ADPKKYLEEAC--KPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK 105 (105)
Q Consensus 43 vDP~~~LrEeC--~~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK 105 (105)
|||++.||++| +++|++++++|++|++||+++++++|||+||||||+||+|||||||||++||
T Consensus 1 VDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCvD~CvapklF~~LK 65 (65)
T PF02320_consen 1 VDPKDALREECKETPKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCVDHCVAPKLFKKLK 65 (65)
T ss_dssp --HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHHHHHHHHHHGGC--
T ss_pred CCchHHHHHHhccchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence 79999999999 5999999999999999999999999999999999999999999999999998
No 2
>KOG4763 consensus Ubiquinol-cytochrome c reductase hinge protein [Energy production and conversion]
Probab=99.96 E-value=2.1e-30 Score=174.39 Aligned_cols=70 Identities=53% Similarity=1.138 Sum_probs=67.7
Q ss_pred CCCCcccCChhHHHHHHhH--hhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047 36 PMADEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK 105 (105)
Q Consensus 36 ~m~EEE~vDP~~~LrEeC~--~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK 105 (105)
-|++|..+||+..+||.|+ ++|++....|++|++||+++++|++||+|||||||||+|||||||||++||
T Consensus 6 ee~~E~vvDplt~~rE~C~~~~kcvK~~~~l~~C~~rv~s~s~tee~Ct~e~fDy~h~~DhCva~KlFa~LK 77 (77)
T KOG4763|consen 6 EEPEELVVDPLTYVRESCKQLPKCVKPLLELQACVKRVQSRSSTEEHCTGEYFDYWHCLDHCVAPKLFANLK 77 (77)
T ss_pred hcchhhhccHHHHHHHHHHhhHHHhhHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5778888899999999999 999999999999999999999999999999999999999999999999998
No 3
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=93.04 E-value=0.13 Score=33.89 Aligned_cols=41 Identities=24% Similarity=0.673 Sum_probs=32.7
Q ss_pred hhchhhHHHHHHHHhhhc-----cCCCCCCCchhhhhhhhhhhhhc
Q 034047 55 PKCVKSLIEYEACIKRIE-----ADDTGSKHCTGQYFDYLSCVDKC 95 (105)
Q Consensus 55 ~~C~~~~~~y~eC~eRV~-----s~~~~~E~C~eE~fDl~hCvD~C 95 (105)
|.|.+++..|+.|-.+== ++......|.++|-+|..||..=
T Consensus 7 ~eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~a 52 (68)
T PF05254_consen 7 PECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKA 52 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 789999999999988743 23334468999999999998653
No 4
>KOG3481 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.26 Score=34.45 Aligned_cols=42 Identities=24% Similarity=0.646 Sum_probs=34.3
Q ss_pred hhchhhHHHHHHHHhh-----hccCCCCCCCchhhhhhhhhhhhhcc
Q 034047 55 PKCVKSLIEYEACIKR-----IEADDTGSKHCTGQYFDYLSCVDKCV 96 (105)
Q Consensus 55 ~~C~~~~~~y~eC~eR-----V~s~~~~~E~C~eE~fDl~hCvD~Cv 96 (105)
+.|.+++..|+.|-.+ +.++....+.|+.++-.|..||..=-
T Consensus 11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal 57 (87)
T KOG3481|consen 11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKAL 57 (87)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHH
Confidence 6799999999999765 44455677899999999999987644
No 5
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=90.77 E-value=0.31 Score=34.27 Aligned_cols=41 Identities=17% Similarity=0.554 Sum_probs=32.0
Q ss_pred hhchhhHHHHHHHHhhhcc-----CCCCCCCchhhhhhhhhhhhhc
Q 034047 55 PKCVKSLIEYEACIKRIEA-----DDTGSKHCTGQYFDYLSCVDKC 95 (105)
Q Consensus 55 ~~C~~~~~~y~eC~eRV~s-----~~~~~E~C~eE~fDl~hCvD~C 95 (105)
+.|..++..|+.|=.|==+ +...+..|.+++-.|..||..=
T Consensus 16 ~eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~a 61 (91)
T PLN03079 16 SPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEH 61 (91)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHH
Confidence 4599999999999887432 3334568999999999998653
No 6
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=77.66 E-value=2.6 Score=29.68 Aligned_cols=39 Identities=23% Similarity=0.522 Sum_probs=33.2
Q ss_pred hhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhh
Q 034047 55 PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDK 94 (105)
Q Consensus 55 ~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~ 94 (105)
..|.++...|-+|.+.+.. ..+.+.|.-++-||+-|+-|
T Consensus 31 ~RC~~FE~e~i~C~~~~G~-~r~kKeC~~e~EDy~EClh~ 69 (96)
T PF10200_consen 31 SRCHPFEKEWIECAEAYGQ-TRGKKECKLELEDYYECLHH 69 (96)
T ss_pred CchHHHHHHHHHHHHHHcc-cchhhhchhHHhHHHHHHhh
Confidence 4799999999999987653 46779999999999999754
No 7
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=41.12 E-value=33 Score=21.07 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=33.6
Q ss_pred HHHHHHhHhhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhc
Q 034047 47 KYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKC 95 (105)
Q Consensus 47 ~~LrEeC~~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~C 95 (105)
+.|++.=.+.|......|.+|... . ....-..|-++...+.-|+-.=
T Consensus 3 ~~l~~~~~~~C~~~i~~~~~C~~~-~-~~~~~~~C~~~~~~m~~Cl~~~ 49 (69)
T PF08583_consen 3 PQLKEEAHKKCADEIEAFAECHKD-R-TFKFVGKCREEKKAMNECLKEE 49 (69)
T ss_pred hHHhHHHHHHhHHHHHHHHHHHhc-c-hHHHHHhhhHHHHHHHHHHHHH
Confidence 445555557899999999999997 2 2233456888888888886543
No 8
>KOG4110 consensus NADH:ubiquinone oxidoreductase, NDUFS5/15kDa [Energy production and conversion]
Probab=39.82 E-value=20 Score=26.38 Aligned_cols=36 Identities=31% Similarity=0.582 Sum_probs=30.7
Q ss_pred chhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhh
Q 034047 57 CVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVD 93 (105)
Q Consensus 57 C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD 93 (105)
|.++-..+-+|.+-+.. ..++.-|--||-||+.||-
T Consensus 36 cg~FE~e~~eC~eayG~-~~g~keC~ie~~dFqECv~ 71 (120)
T KOG4110|consen 36 CGKFEKEWMECAEAYGL-ERGEKECAIEYDDFQECVL 71 (120)
T ss_pred ccHHHHHHHHHHHHHhh-HhhhHHHHHHHHHHHHHHH
Confidence 89999999999998764 2467789999999999984
No 9
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=39.68 E-value=27 Score=25.11 Aligned_cols=38 Identities=26% Similarity=0.554 Sum_probs=23.3
Q ss_pred HHHhhhccC--CCCCCCchhhhhhhhhhhhhcch------hHHHhhhC
Q 034047 66 ACIKRIEAD--DTGSKHCTGQYFDYLSCVDKCVA------PKLFTQLK 105 (105)
Q Consensus 66 eC~eRV~s~--~~~~E~C~eE~fDl~hCvD~CvA------PkLF~~LK 105 (105)
.|.++++.. +++.+.=... +|-.|+.+||. |.|+++||
T Consensus 83 ~C~dk~~d~~~~~~~~~~~~~--~~e~C~~~Cvd~hi~llP~l~~r~k 128 (131)
T PF05811_consen 83 HCQDKAKDKMDPNPNESDAEK--QLESCVNKCVDDHIKLLPSLTKRMK 128 (131)
T ss_pred HHHHHHHhhccCCCCchHHHH--HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 567777642 2333333333 88899999975 56666654
No 10
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=31.66 E-value=15 Score=24.52 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=13.7
Q ss_pred hhhhhhhcccCCCCCccc
Q 034047 25 NSIQLLHIVFNPMADEEI 42 (105)
Q Consensus 25 ~~~~~~~~~~~~m~EEE~ 42 (105)
+..|++.++ |+||+||-
T Consensus 18 k~~~LIaGy-ntms~eEk 34 (97)
T PF12650_consen 18 KGYFLIAGY-NTMSKEEK 34 (97)
T ss_pred Ccccchhhc-ccCCHHHH
Confidence 456789999 99998873
No 11
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=30.61 E-value=20 Score=30.89 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=19.7
Q ss_pred hccCCCCCCCchhhhhhhhhhhhhcch
Q 034047 71 IEADDTGSKHCTGQYFDYLSCVDKCVA 97 (105)
Q Consensus 71 V~s~~~~~E~C~eE~fDl~hCvD~CvA 97 (105)
..+|..+.+.=.||+|| ||+|.|.+
T Consensus 100 ~qARRTGt~spLGeLFD--H~vDsint 124 (384)
T COG5050 100 RQARRTGTGSPLGELFD--HGVDSINT 124 (384)
T ss_pred HhhhcCCCCCCcHHHHh--hhHHHHHH
Confidence 34455677888999999 99999875
No 12
>PF14233 DUF4335: Domain of unknown function (DUF4335)
Probab=28.09 E-value=27 Score=26.69 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhhhcchh
Q 034047 82 TGQYFDYLSCVDKCVAP 98 (105)
Q Consensus 82 ~eE~fDl~hCvD~CvAP 98 (105)
+=|+||++.|+|.+.+.
T Consensus 117 ~~QLfDLv~aLDq~~~D 133 (189)
T PF14233_consen 117 TSQLFDLVEALDQFFAD 133 (189)
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 45799999999998653
Done!