Query 034049
Match_columns 105
No_of_seqs 117 out of 1016
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 1.8E-34 3.9E-39 205.1 7.1 104 1-104 61-168 (321)
2 KOG0819 Annexin [Intracellular 99.9 3.2E-27 6.9E-32 168.1 5.5 97 1-97 217-320 (321)
3 PF00191 Annexin: Annexin; In 99.8 1.8E-19 3.8E-24 102.8 6.5 60 32-91 1-62 (66)
4 smart00335 ANX Annexin repeats 99.5 1.6E-14 3.5E-19 79.0 4.8 45 47-91 5-49 (53)
5 PF00191 Annexin: Annexin; In 97.8 1.6E-05 3.5E-10 44.7 2.5 25 1-25 42-66 (66)
6 smart00335 ANX Annexin repeats 97.8 1.6E-05 3.5E-10 42.9 1.8 25 1-25 29-53 (53)
7 PF14003 YlbE: YlbE-like prote 75.3 4.4 9.6E-05 22.9 2.7 32 53-84 17-48 (65)
8 PF06854 Phage_Gp15: Bacteriop 56.7 15 0.00033 24.8 3.1 40 58-100 108-148 (183)
9 PF10788 DUF2603: Protein of u 55.2 9.6 0.00021 24.7 1.8 31 61-91 65-95 (137)
10 PHA01794 hypothetical protein 55.1 42 0.00092 21.5 4.6 24 5-28 75-100 (134)
11 PF13720 Acetyltransf_11: Udp 54.3 14 0.00031 21.6 2.3 27 55-81 27-55 (83)
12 PF12098 DUF3574: Protein of u 47.3 19 0.00042 22.2 2.2 19 57-75 73-91 (104)
13 PF02964 MeMO_Hyd_G: Methane m 44.4 37 0.00079 22.5 3.2 53 24-76 60-117 (161)
14 PF13062 DUF3924: Protein of u 43.4 29 0.00063 18.7 2.2 21 59-79 14-34 (62)
15 PF13043 DUF3903: Domain of un 39.5 32 0.0007 17.1 1.9 18 60-77 9-26 (40)
16 PRK12461 UDP-N-acetylglucosami 35.1 62 0.0013 22.9 3.5 27 55-81 199-227 (255)
17 cd00219 ToxGAP GTPase-activati 35.0 1.2E+02 0.0026 19.2 4.9 54 16-69 39-107 (120)
18 COG3742 Uncharacterized protei 34.3 1.3E+02 0.0028 19.4 4.6 54 20-75 6-67 (131)
19 KOG2027 Spindle pole body prot 31.4 51 0.0011 25.1 2.6 38 47-84 82-123 (388)
20 PF07579 DUF1548: Domain of Un 30.4 48 0.001 21.5 2.1 22 56-78 1-22 (135)
21 PF04699 P16-Arc: ARP2/3 compl 29.7 73 0.0016 21.0 2.9 23 9-31 42-65 (152)
22 KOG4006 Anti-proliferation fac 29.5 22 0.00048 26.1 0.5 18 1-18 27-44 (311)
23 PF09832 DUF2059: Uncharacteri 28.4 33 0.00071 18.5 1.0 24 56-79 17-40 (64)
24 KOG3426 NADH:ubiquinone oxidor 27.9 1.6E+02 0.0035 18.6 4.2 27 47-73 71-97 (124)
25 PF05396 Phage_T7_Capsid: Phag 27.5 1.7E+02 0.0037 18.6 4.2 48 23-81 53-103 (123)
26 KOG2228 Origin recognition com 27.5 1.4E+02 0.0029 22.9 4.2 23 5-27 186-220 (408)
27 PF13766 ECH_C: 2-enoyl-CoA Hy 27.0 1.6E+02 0.0035 18.2 4.0 45 47-91 34-86 (118)
28 PF13348 Y_phosphatase3C: Tyro 24.6 1.3E+02 0.0028 16.3 3.8 47 22-68 20-67 (68)
29 COG5118 BDP1 Transcription ini 23.6 1.2E+02 0.0027 23.3 3.5 44 31-76 370-414 (507)
30 PF13315 DUF4085: Protein of u 23.1 2.1E+02 0.0045 19.9 4.3 73 10-82 40-120 (208)
31 COG5051 RPL36A Ribosomal prote 23.0 1.8E+02 0.004 17.4 4.3 34 6-39 39-74 (97)
32 PF05186 Dpy-30: Dpy-30 motif; 22.7 1.2E+02 0.0026 15.3 3.1 31 9-39 5-39 (42)
33 KOG1014 17 beta-hydroxysteroid 22.5 14 0.0003 27.2 -1.6 40 52-91 77-118 (312)
34 PF10083 DUF2321: Uncharacteri 22.3 1.4E+02 0.003 19.9 3.1 38 18-55 106-148 (158)
35 PF00901 Orbi_VP5: Orbivirus o 21.6 4.1E+02 0.0089 21.1 6.0 81 9-91 112-210 (508)
36 COG3892 Uncharacterized protei 21.4 65 0.0014 23.5 1.6 43 14-56 117-178 (310)
37 COG1043 LpxA Acyl-[acyl carrie 20.9 97 0.0021 22.3 2.4 26 57-82 206-233 (260)
38 KOG0930 Guanine nucleotide exc 20.6 3.7E+02 0.008 20.0 5.9 74 27-105 90-174 (395)
39 PF10012 DUF2255: Uncharacteri 20.5 1.3E+02 0.0028 18.9 2.7 19 56-74 78-96 (116)
40 PRK13434 F0F1 ATP synthase sub 20.1 1.1E+02 0.0024 20.3 2.5 25 47-71 72-97 (184)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=205.06 Aligned_cols=104 Identities=37% Similarity=0.497 Sum_probs=101.2
Q ss_pred CccchHHHHHhhhcchhHHHHHHHHccCCHHHHHHHHHHHHcCCCh--HHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHH
Q 034049 1 MYSEDLCKRLSSELSGKLEMAVLLWMHDPAGRDAVVVRNSLTTGNL--KAATEVICSRTPSQIQLIRQHYHSKFGVHLED 78 (105)
Q Consensus 1 ~y~~~L~~~l~~e~sg~~~~~l~~~~~~~~~~dA~~L~~A~~g~gt--~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~ 78 (105)
+||+||.++|++|+||+|++++++|+.+|+.+||+.|++||+|.|| ++||+|+|+|+|.|+++|+++|+..|+++|++
T Consensus 61 ~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEe 140 (321)
T KOG0819|consen 61 MYGKDLIKDLKSELSGDFERAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEE 140 (321)
T ss_pred HHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHH
Confidence 5999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhccccccchh--hhccccccccccc
Q 034049 79 DIKRHTSGDHEKV--EYVSLLFYLRYCV 104 (105)
Q Consensus 79 ~I~~~~sG~~~~~--aL~~~~~~~~~~~ 104 (105)
+|.+++||+|+++ +|+++.|+|+..|
T Consensus 141 DI~s~TSG~frklLv~L~~~~R~e~~~v 168 (321)
T KOG0819|consen 141 DIASDTSGDFRKLLVSLVQGNRDEGDRV 168 (321)
T ss_pred HhhhccCchHHHHHHHHHhcCCccCCCc
Confidence 9999999999999 9999999987654
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.2e-27 Score=168.14 Aligned_cols=97 Identities=25% Similarity=0.363 Sum_probs=92.8
Q ss_pred CccchHHHHHhhhcchhHHHHHHHH---ccCCHHHHHHHHHHHHcCCCh--HHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 034049 1 MYSEDLCKRLSSELSGKLEMAVLLW---MHDPAGRDAVVVRNSLTTGNL--KAATEVICSRTPSQIQLIRQHYHSKFGVH 75 (105)
Q Consensus 1 ~y~~~L~~~l~~e~sg~~~~~l~~~---~~~~~~~dA~~L~~A~~g~gt--~~li~il~~rs~~~l~~i~~~Y~~~yg~~ 75 (105)
++|+++++.|++|++|+|+.+|+++ +++||.|||+.||.||+|.|| ++||||+++|++.||..|+..|+++||++
T Consensus 217 ~~g~diek~I~~e~~gd~~~~llaiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ks 296 (321)
T KOG0819|consen 217 ISGKDIEKSIKEEFSGDFEKLLLAIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKS 296 (321)
T ss_pred hcchhHHHHHhhccCchHHHHHHHHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCcc
Confidence 4799999999999999999999887 579999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhhccccccchh--hhcccc
Q 034049 76 LEDDIKRHTSGDHEKV--EYVSLL 97 (105)
Q Consensus 76 L~~~I~~~~sG~~~~~--aL~~~~ 97 (105)
|..+|+.++||||+++ +||++.
T Consensus 297 L~~~I~~dtsGdY~~~LlaL~g~~ 320 (321)
T KOG0819|consen 297 LYSAIKGDTSGDYKKALLALLGGD 320 (321)
T ss_pred HHHHHhhhccchHHHHHHHHhCCC
Confidence 9999999999999999 998764
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.80 E-value=1.8e-19 Score=102.84 Aligned_cols=60 Identities=40% Similarity=0.717 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCCh--HHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHhhccccccchh
Q 034049 32 RDAVVVRNSLTTGNL--KAATEVICSRTPSQIQLIRQHYHSKFGVHLEDDIKRHTSGDHEKV 91 (105)
Q Consensus 32 ~dA~~L~~A~~g~gt--~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~ 91 (105)
+||+.|++|++|+|+ ..+++|+++||+.|++.|+++|++.||++|.++|+++++|+|+++
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~ 62 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKL 62 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHH
Confidence 689999999999999 899999999999999999999999999999999999999999998
No 4
>smart00335 ANX Annexin repeats.
Probab=99.53 E-value=1.6e-14 Score=78.98 Aligned_cols=45 Identities=49% Similarity=0.790 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHhhccccccchh
Q 034049 47 KAATEVICSRTPSQIQLIRQHYHSKFGVHLEDDIKRHTSGDHEKV 91 (105)
Q Consensus 47 ~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~ 91 (105)
..|++|+++|++.|+..|+++|++.||++|.++|+++++|+|+++
T Consensus 5 ~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~ 49 (53)
T smart00335 5 KTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKL 49 (53)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHH
Confidence 789999999999999999999999999999999999999999997
No 5
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=97.82 E-value=1.6e-05 Score=44.72 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.3
Q ss_pred CccchHHHHHhhhcchhHHHHHHHH
Q 034049 1 MYSEDLCKRLSSELSGKLEMAVLLW 25 (105)
Q Consensus 1 ~y~~~L~~~l~~e~sg~~~~~l~~~ 25 (105)
+||++|.++|+++++|+|+++|++|
T Consensus 42 ~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 42 KYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 4899999999999999999999875
No 6
>smart00335 ANX Annexin repeats.
Probab=97.76 E-value=1.6e-05 Score=42.92 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=23.1
Q ss_pred CccchHHHHHhhhcchhHHHHHHHH
Q 034049 1 MYSEDLCKRLSSELSGKLEMAVLLW 25 (105)
Q Consensus 1 ~y~~~L~~~l~~e~sg~~~~~l~~~ 25 (105)
+||++|.++|++++||+|++++++|
T Consensus 29 ~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 29 RYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred HhCccHHHHHHHhcChHHHHHHHhC
Confidence 4899999999999999999999875
No 7
>PF14003 YlbE: YlbE-like protein
Probab=75.25 E-value=4.4 Score=22.90 Aligned_cols=32 Identities=13% Similarity=0.352 Sum_probs=28.2
Q ss_pred HhhCCHHHHHHHHHHHHHhcCCCHHHHHhhcc
Q 034049 53 ICSRTPSQIQLIRQHYHSKFGVHLEDDIKRHT 84 (105)
Q Consensus 53 l~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~ 84 (105)
..+|.|.++...-.++..-|++.+.+.|.+-.
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 45899999999999999999999999888653
No 8
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=56.73 E-value=15 Score=24.81 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHhhccccccchh-hhccccccc
Q 034049 58 PSQIQLIRQHYHSKFGVHLEDDIKRHTSGDHEKV-EYVSLLFYL 100 (105)
Q Consensus 58 ~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~-aL~~~~~~~ 100 (105)
+.+...|..+|.+.||.+|.+.+. .-+|-++ ||+.+-.++
T Consensus 108 ~~Da~~IyasF~~~YgIdL~~~~~---~lhW~~F~aL~~~L~~~ 148 (183)
T PF06854_consen 108 EQDADYIYASFLQQYGIDLIEEQG---YLHWWKFKALFNGLSED 148 (183)
T ss_pred HHhHHHHHHHHHHHhCccHHHhcc---cCcHHHHHHHHhcCCCC
Confidence 478889999999999999965432 3467777 777765544
No 9
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=55.17 E-value=9.6 Score=24.73 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHhhccccccchh
Q 034049 61 IQLIRQHYHSKFGVHLEDDIKRHTSGDHEKV 91 (105)
Q Consensus 61 l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~ 91 (105)
+..++++++..|.-.|+.+|.+.+.=||.++
T Consensus 65 i~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dv 95 (137)
T PF10788_consen 65 IESLKNAQKENFELKLEKDILQQMPIDFEDV 95 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 4578999999999999999999999999998
No 10
>PHA01794 hypothetical protein
Probab=55.10 E-value=42 Score=21.54 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=15.2
Q ss_pred hHHHHHhhhc--chhHHHHHHHHccC
Q 034049 5 DLCKRLSSEL--SGKLEMAVLLWMHD 28 (105)
Q Consensus 5 ~L~~~l~~e~--sg~~~~~l~~~~~~ 28 (105)
.|.+.|++|. ||.|+..+..|+.+
T Consensus 75 ~lF~eleqEm~~SGFF~~ki~kyien 100 (134)
T PHA01794 75 GLFAELEKEMVDSGFFRAKIKKYIEN 100 (134)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556666654 67777777777653
No 11
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=54.35 E-value=14 Score=21.55 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=19.5
Q ss_pred hCCHHHHHHHHHHHHHhcCCC--HHHHHh
Q 034049 55 SRTPSQIQLIRQHYHSKFGVH--LEDDIK 81 (105)
Q Consensus 55 ~rs~~~l~~i~~~Y~~~yg~~--L~~~I~ 81 (105)
+-+++++..|+++|+..|... +.+++.
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 357899999999999988544 445444
No 12
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=47.25 E-value=19 Score=22.18 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 034049 57 TPSQIQLIRQHYHSKFGVH 75 (105)
Q Consensus 57 s~~~l~~i~~~Y~~~yg~~ 75 (105)
++..+.+|+++|++.|+..
T Consensus 73 ~~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3578899999999998864
No 13
>PF02964 MeMO_Hyd_G: Methane monooxygenase, hydrolase gamma chain; InterPro: IPR004222 Methane monooxygenases (1.14.13.25 from EC) catalyse the oxidation of methane to methanol in the presence of oxygen and NADH in methanotrophs. It has a broad specificity, hydroxylating many alkanes, and converting alkenes into the corresponding epoxides. In additional reactions, CO is oxidized to CO2, ammonia is oxidized to hydroxylamine, and some aromatic compounds and cyclic alkanes can also be hydroxylated, although more slowly. In Methylococcus capsulatus there are two forms of the enzyme, a soluble and a membrane-bound type. The soluble form consists of 3 components, A, B and C. Protein A is made up of 3 chains, alpha, beta and gamma. This entry represents the gamma chain of methane monooxygenases. Structurally, the gamma chain contains two domains, each consisting of a three helices arranged in an open bundle topology [, ]. ; GO: 0015049 methane monooxygenase activity, 0015947 methane metabolic process; PDB: 1FZ1_E 1FZ4_F 1XU3_E 1FZ7_F 1XVB_F 1FZ3_E 1XMG_E 1FZI_F 1XVD_F 1FZ2_E ....
Probab=44.41 E-value=37 Score=22.47 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHccCCHHHHHHHHHHHHcCCCh-----HHHHHHHhhCCHHHHHHHHHHHHHhcCCCH
Q 034049 24 LWMHDPAGRDAVVVRNSLTTGNL-----KAATEVICSRTPSQIQLIRQHYHSKFGVHL 76 (105)
Q Consensus 24 ~~~~~~~~~dA~~L~~A~~g~gt-----~~li~il~~rs~~~l~~i~~~Y~~~yg~~L 76 (105)
+.+......++..+.+++.|... +.+-.+-..-+.-+++.|...|.+.|+-++
T Consensus 60 AvLk~~~~sd~~l~tkt~~G~dA~~V~~~~~ak~~a~~~~yEaErI~i~FR~~~KPPv 117 (161)
T PF02964_consen 60 AVLKSEAFSDADLLTKTTTGEDAQQVAAEWLAKMAAAKDKYEAERIHIEFRQAYKPPV 117 (161)
T ss_dssp HHHHHHHS-HHHHHHB-TTS-BHHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhccHHHHHHhccccccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCC
Confidence 33444445678888888888766 445555556888999999999999887554
No 14
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=43.43 E-value=29 Score=18.74 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHH
Q 034049 59 SQIQLIRQHYHSKFGVHLEDD 79 (105)
Q Consensus 59 ~~l~~i~~~Y~~~yg~~L~~~ 79 (105)
+.+..++++|+.+.|.++.+.
T Consensus 14 ekl~llkqayqkktgatises 34 (62)
T PF13062_consen 14 EKLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHHhhcCCccchh
Confidence 457788999999999887654
No 15
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=39.53 E-value=32 Score=17.14 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCCHH
Q 034049 60 QIQLIRQHYHSKFGVHLE 77 (105)
Q Consensus 60 ~l~~i~~~Y~~~yg~~L~ 77 (105)
-++.+++..+++||+.|-
T Consensus 9 ai~kvr~eckrrfgktll 26 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHHhchhhh
Confidence 366788889999999874
No 16
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=35.09 E-value=62 Score=22.90 Aligned_cols=27 Identities=7% Similarity=0.276 Sum_probs=20.8
Q ss_pred hCCHHHHHHHHHHHHHhcCCC--HHHHHh
Q 034049 55 SRTPSQIQLIRQHYHSKFGVH--LEDDIK 81 (105)
Q Consensus 55 ~rs~~~l~~i~~~Y~~~yg~~--L~~~I~ 81 (105)
.-+++++..|+++|+..|.+. +.+++.
T Consensus 199 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
T PRK12461 199 GFSSRAIRALKRAYKIIYRSGLSVQQAVA 227 (255)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 357899999999999988774 555554
No 17
>cd00219 ToxGAP GTPase-activating protein (GAP) domain found in bacterial cytotoxins, ExoS, SptP, and YopE. Part of protein secretion system; stimulates Rac1- dependent cytoskeletal changes that promote bacterial internalization.
Probab=35.05 E-value=1.2e+02 Score=19.23 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=34.9
Q ss_pred hhHHHHHHHH--c-cC---C--HHHHHHHHHHHHcC-----CCh--HHHHHHHhhCCHHHHHHHHHHHH
Q 034049 16 GKLEMAVLLW--M-HD---P--AGRDAVVVRNSLTT-----GNL--KAATEVICSRTPSQIQLIRQHYH 69 (105)
Q Consensus 16 g~~~~~l~~~--~-~~---~--~~~dA~~L~~A~~g-----~gt--~~li~il~~rs~~~l~~i~~~Y~ 69 (105)
|.+++++.++ + .. + ..+-+..|..-+-| ||| ....+.+.+-+++++.++.+.-+
T Consensus 39 G~LRsl~T~Lqgi~~g~~~~q~~~~A~~lL~~~igGipfqQWGT~Gg~as~~V~~As~e~L~~a~~~lh 107 (120)
T cd00219 39 GPLRSLVTALQGIRQGSQGGQLRDQATRLLNTQIGGIPFSQWGTCGGAASELVDSASPEQLTEAAKQLH 107 (120)
T ss_pred chHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccceeHHHhhccchHHHHHHHhCCHHHHHHHHHHHH
Confidence 6688887666 2 22 1 22223344444444 888 88888899999999988766544
No 18
>COG3742 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.33 E-value=1.3e+02 Score=19.37 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHcCCCh--------HHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 034049 20 MAVLLWMHDPAGRDAVVVRNSLTTGNL--------KAATEVICSRTPSQIQLIRQHYHSKFGVH 75 (105)
Q Consensus 20 ~~l~~~~~~~~~~dA~~L~~A~~g~gt--------~~li~il~~rs~~~l~~i~~~Y~~~yg~~ 75 (105)
+++++++.+-+ +|..+.+++...+. .-.+-+|..|..+....+.+.+....+.+
T Consensus 6 SaivAil~~E~--~A~~~~~~la~a~~~~~Sa~~~~E~~~vl~rr~~p~a~~~vd~~l~~~~~~ 67 (131)
T COG3742 6 SAIVAILNDEP--DAEALAAALADAHVRRMSAASYLEAAAVLTRRGGPEARRLVDLLLSEAGAQ 67 (131)
T ss_pred HHHHHHHhCCc--chHHHHHHHhcCCCeeechhHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCe
Confidence 56777776544 56666666666442 12233444555556666666665555443
No 19
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=31.36 E-value=51 Score=25.11 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHHHHHhh--C-C-HHHHHHHHHHHHHhcCCCHHHHHhhcc
Q 034049 47 KAATEVICS--R-T-PSQIQLIRQHYHSKFGVHLEDDIKRHT 84 (105)
Q Consensus 47 ~~li~il~~--r-s-~~~l~~i~~~Y~~~yg~~L~~~I~~~~ 84 (105)
+++..+|.. | + =.+|+.|++.|-.+||+++........
T Consensus 82 EAVsSlifAA~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~ 123 (388)
T KOG2027|consen 82 EAVSSLIFAAPRLSEVPELREIRDLFVKKYGKEFVKAAIELR 123 (388)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 556555544 2 2 289999999999999999998888776
No 20
>PF07579 DUF1548: Domain of Unknown Function (DUF1548); InterPro: IPR013044 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR011436 from INTERPRO.
Probab=30.44 E-value=48 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHH
Q 034049 56 RTPSQIQLIRQHYHSKFGVHLED 78 (105)
Q Consensus 56 rs~~~l~~i~~~Y~~~yg~~L~~ 78 (105)
|++.||+.|. .|+..||++|.-
T Consensus 1 r~~~EWH~i~-~~Kh~~G~~LGL 22 (135)
T PF07579_consen 1 RHEEEWHMIN-GFKHYYGKELGL 22 (135)
T ss_pred CchHHHHHHH-HHHHhcchhhCc
Confidence 6788998775 478889988863
No 21
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=29.67 E-value=73 Score=20.98 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=14.6
Q ss_pred HHhhh-cchhHHHHHHHHccCCHH
Q 034049 9 RLSSE-LSGKLEMAVLLWMHDPAG 31 (105)
Q Consensus 9 ~l~~e-~sg~~~~~l~~~~~~~~~ 31 (105)
.+++- .+|++..+|...+.+||-
T Consensus 42 qvr~ll~~g~~~~ALk~aL~npP~ 65 (152)
T PF04699_consen 42 QVRQLLSSGDNEEALKAALENPPY 65 (152)
T ss_dssp HHHHHHHCT-HHHHHHHHTSS--T
T ss_pred HHHHHHhCCCHHHHHHHhccCCCc
Confidence 34443 368999999999988774
No 22
>KOG4006 consensus Anti-proliferation factor BTG1/TOB [Signal transduction mechanisms; General function prediction only]
Probab=29.54 E-value=22 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=15.6
Q ss_pred CccchHHHHHhhhcchhH
Q 034049 1 MYSEDLCKRLSSELSGKL 18 (105)
Q Consensus 1 ~y~~~L~~~l~~e~sg~~ 18 (105)
.||.+|+..|++.+.|+|
T Consensus 27 ifgeele~~l~~k~~~hw 44 (311)
T KOG4006|consen 27 IFGEELERLLKKKFEGHW 44 (311)
T ss_pred hhHHHHHHHHHHhhcCcc
Confidence 478999999999998875
No 23
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=28.41 E-value=33 Score=18.55 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHH
Q 034049 56 RTPSQIQLIRQHYHSKFGVHLEDD 79 (105)
Q Consensus 56 rs~~~l~~i~~~Y~~~yg~~L~~~ 79 (105)
=|+.++..+...|.+-.|+.+...
T Consensus 17 ft~~El~~i~~FY~Sp~Gqk~~~~ 40 (64)
T PF09832_consen 17 FTEEELDAILAFYESPLGQKIVAK 40 (64)
T ss_dssp S-HHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCHHhHHHHHH
Confidence 478999999999999888887653
No 24
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=27.90 E-value=1.6e+02 Score=18.56 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 034049 47 KAATEVICSRTPSQIQLIRQHYHSKFG 73 (105)
Q Consensus 47 ~~li~il~~rs~~~l~~i~~~Y~~~yg 73 (105)
.-+|+.|+.....+|..|...+++..+
T Consensus 71 ~rViDlLV~kg~~elkeiv~~~kqr~H 97 (124)
T KOG3426|consen 71 PRVIDLLVIKGMEELKEIVDHWKQRHH 97 (124)
T ss_pred chhhhHHHHhhHHHHHHHHHHHhCchH
Confidence 679999999999999999999887643
No 25
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=27.52 E-value=1.7e+02 Score=18.65 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHccCCHHHHHHHHHHHHcCCCh---HHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHh
Q 034049 23 LLWMHDPAGRDAVVVRNSLTTGNL---KAATEVICSRTPSQIQLIRQHYHSKFGVHLEDDIK 81 (105)
Q Consensus 23 ~~~~~~~~~~dA~~L~~A~~g~gt---~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~ 81 (105)
+.|+....+..+..|.+|+....- +.++..+ ...|...||+.-...+.
T Consensus 53 ~~~~~~~~~~~~ea~~~Ai~~~dla~vk~~vn~~-----------~~s~~~~fG~~p~r~vt 103 (123)
T PF05396_consen 53 MSHAEANSPAAAEAFNEAIESGDLATVKAAVNLA-----------GASYRKKFGKAPERSVT 103 (123)
T ss_pred HHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHHH-----------HHHHHHHhCCCcccccc
Confidence 455543344456666666653221 3333332 33467778877665444
No 26
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=27.51 E-value=1.4e+02 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=16.7
Q ss_pred hHHHHHhhhcc------------hhHHHHHHHHcc
Q 034049 5 DLCKRLSSELS------------GKLEMAVLLWMH 27 (105)
Q Consensus 5 ~L~~~l~~e~s------------g~~~~~l~~~~~ 27 (105)
-|++.+|+.|| |+|.+++-.++.
T Consensus 186 ~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 186 LLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 57888888876 567777766663
No 27
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=27.02 E-value=1.6e+02 Score=18.20 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=26.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHhhcc--------ccccchh
Q 034049 47 KAATEVICSRTPSQIQLIRQHYHSKFGVHLEDDIKRHT--------SGDHEKV 91 (105)
Q Consensus 47 ~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~--------sG~~~~~ 91 (105)
....+.|-++||.-+.-....+++-.+.+|.+.+..++ .|||..-
T Consensus 34 ~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EG 86 (118)
T PF13766_consen 34 QKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEG 86 (118)
T ss_dssp HHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 34445556667766666666666666677777766543 3666655
No 28
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=24.64 E-value=1.3e+02 Score=16.28 Aligned_cols=47 Identities=6% Similarity=-0.098 Sum_probs=18.0
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCh-HHHHHHHhhCCHHHHHHHHHHH
Q 034049 22 VLLWMHDPAGRDAVVVRNSLTTGNL-KAATEVICSRTPSQIQLIRQHY 68 (105)
Q Consensus 22 l~~~~~~~~~~dA~~L~~A~~g~gt-~~li~il~~rs~~~l~~i~~~Y 68 (105)
+..++...+++-...+..--...|+ +....--++-++.++..+++.|
T Consensus 20 ~~~~~~~~~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 20 LRSLMSVRPEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp --HHHS--HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred hhhhcCccHHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 3344444444433333222223455 4333333355666666666554
No 29
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=23.62 E-value=1.2e+02 Score=23.28 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCh-HHHHHHHhhCCHHHHHHHHHHHHHhcCCCH
Q 034049 31 GRDAVVVRNSLTTGNL-KAATEVICSRTPSQIQLIRQHYHSKFGVHL 76 (105)
Q Consensus 31 ~~dA~~L~~A~~g~gt-~~li~il~~rs~~~l~~i~~~Y~~~yg~~L 76 (105)
..+...+|+|+.-||| =.||.-|.- +....+|+..|.+.-.+..
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP--~R~RkqIKaKfi~Eek~nP 414 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFP--NRERKQIKAKFIKEEKVNP 414 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcC--chhHHHHHHHHHHHhhhCH
Confidence 4467888999999999 455554432 3446677777776655544
No 30
>PF13315 DUF4085: Protein of unknown function (DUF4085)
Probab=23.10 E-value=2.1e+02 Score=19.94 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=41.4
Q ss_pred HhhhcchhHHHHHHHHccCCHHHHHHHHHHHHcC--CChHHHHHH---HhhCCHHHHHHHHHHHHHhc---CCCHHHHHh
Q 034049 10 LSSELSGKLEMAVLLWMHDPAGRDAVVVRNSLTT--GNLKAATEV---ICSRTPSQIQLIRQHYHSKF---GVHLEDDIK 81 (105)
Q Consensus 10 l~~e~sg~~~~~l~~~~~~~~~~dA~~L~~A~~g--~gt~~li~i---l~~rs~~~l~~i~~~Y~~~y---g~~L~~~I~ 81 (105)
.+..++++++...--+++..|......++...-. ..+..|+.. ++.-+..++....++|...| ..+|...|.
T Consensus 40 y~~~~~~~~e~~~~~llk~LP~~i~~~I~d~~~~~~~~s~~l~~~~~ew~~~~~~~~~~~~~~Y~e~~~sI~~~lp~~v~ 119 (208)
T PF13315_consen 40 YEQSLKEELEERKEDLLKFLPESIHPYIADIRFNLDYPSEKLKKAITEWCEDYEKRVKRLCQAYYEYYNSIKEKLPQNVQ 119 (208)
T ss_pred hHHHHhhhHHHHHHHHHHhCcHHHHHHHccCcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566666665566666777777777665433 233333333 44555677777777777664 334444444
Q ss_pred h
Q 034049 82 R 82 (105)
Q Consensus 82 ~ 82 (105)
.
T Consensus 120 q 120 (208)
T PF13315_consen 120 Q 120 (208)
T ss_pred H
Confidence 3
No 31
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=23.01 E-value=1.8e+02 Score=17.45 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=19.4
Q ss_pred HHHHHhhhcch--hHHHHHHHHccCCHHHHHHHHHH
Q 034049 6 LCKRLSSELSG--KLEMAVLLWMHDPAGRDAVVVRN 39 (105)
Q Consensus 6 L~~~l~~e~sg--~~~~~l~~~~~~~~~~dA~~L~~ 39 (105)
+...|-.|.+| +++.-++.++.+..+--|+.|-+
T Consensus 39 fvrsivrEiaGlsPyErr~i~Lirns~~krArKlak 74 (97)
T COG5051 39 FVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAK 74 (97)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHH
Confidence 34445555555 46666666666666555655543
No 32
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=22.75 E-value=1.2e+02 Score=15.29 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHhhhcchhHHHHHHHHc----cCCHHHHHHHHHH
Q 034049 9 RLSSELSGKLEMAVLLWM----HDPAGRDAVVVRN 39 (105)
Q Consensus 9 ~l~~e~sg~~~~~l~~~~----~~~~~~dA~~L~~ 39 (105)
=|++.+..-+-.+|..+. .||..+.|..|.+
T Consensus 5 YL~~~v~p~L~~gL~~l~~~rP~DPi~~La~~Ll~ 39 (42)
T PF05186_consen 5 YLKETVGPVLTEGLAELAKERPEDPIEFLAEYLLK 39 (42)
T ss_dssp HHHHHTHHHHHHHHHHHHHH--SSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 345555555666666664 4888888888754
No 33
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=22.50 E-value=14 Score=27.22 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=29.9
Q ss_pred HHhhCCHHHHHHHHHHHHHhcCCCHHHHHhhccccc--cchh
Q 034049 52 VICSRTPSQIQLIRQHYHSKFGVHLEDDIKRHTSGD--HEKV 91 (105)
Q Consensus 52 il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~--~~~~ 91 (105)
+|++|++.-|+.+++.-.+.|+....-.+.+.++|+ |+++
T Consensus 77 vLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i 118 (312)
T KOG1014|consen 77 VLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKL 118 (312)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHH
Confidence 467899999999999999999855544444555666 6665
No 34
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.26 E-value=1.4e+02 Score=19.92 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=21.1
Q ss_pred HHHHHHHHccC--CHHHHHHHHHHHHcCCCh---HHHHHHHhh
Q 034049 18 LEMAVLLWMHD--PAGRDAVVVRNSLTTGNL---KAATEVICS 55 (105)
Q Consensus 18 ~~~~l~~~~~~--~~~~dA~~L~~A~~g~gt---~~li~il~~ 55 (105)
|...+--++.+ ....-+..+.+.+...|+ +++.+||+.
T Consensus 106 ~~~sl~dL~~d~PkT~vA~~rfKk~~~K~g~~v~~~~~dIlVd 148 (158)
T PF10083_consen 106 FKESLPDLTKDTPKTKVAATRFKKILSKAGSIVGDAIRDILVD 148 (158)
T ss_pred HHhhhHHHhhcCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444432 234445666677776555 677777754
No 35
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.64 E-value=4.1e+02 Score=21.14 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=47.5
Q ss_pred HHhhhcchhHHHHHHHH-----ccCCHHHHHHHHHHHHcCCCh-------------HHHHHHHhhCCHHHHHHHHHHHHH
Q 034049 9 RLSSELSGKLEMAVLLW-----MHDPAGRDAVVVRNSLTTGNL-------------KAATEVICSRTPSQIQLIRQHYHS 70 (105)
Q Consensus 9 ~l~~e~sg~~~~~l~~~-----~~~~~~~dA~~L~~A~~g~gt-------------~~li~il~~rs~~~l~~i~~~Y~~ 70 (105)
.|.+.+..++++.-..+ ........-+.|.+|+++.+. .+|.+=-..||.++...|.. |.+
T Consensus 112 ~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~-yr~ 190 (508)
T PF00901_consen 112 KIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEE-YRQ 190 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence 34444555555543222 123344456777888887432 34555555688888876654 777
Q ss_pred hcCCCHHHHHhhccccccchh
Q 034049 71 KFGVHLEDDIKRHTSGDHEKV 91 (105)
Q Consensus 71 ~yg~~L~~~I~~~~sG~~~~~ 91 (105)
.|. .|.++|.-+-.|-.+.+
T Consensus 191 ki~-aL~~aIe~Er~~m~EEA 210 (508)
T PF00901_consen 191 KID-ALKNAIEVEREGMQEEA 210 (508)
T ss_pred HHH-HHHHHHHHHHhhHHHHH
Confidence 775 57777776655554443
No 36
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=65 Score=23.46 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHc-------------cCCH------HHHHHHHHHHHcCCChHHHHHHHhhC
Q 034049 14 LSGKLEMAVLLWM-------------HDPA------GRDAVVVRNSLTTGNLKAATEVICSR 56 (105)
Q Consensus 14 ~sg~~~~~l~~~~-------------~~~~------~~dA~~L~~A~~g~gt~~li~il~~r 56 (105)
+|||+.+.|+.|- .||. +.....|++|....|.+.|++|+..+
T Consensus 117 ~~~diGs~Lv~WP~ehvVKcL~FYHPdD~a~lr~~Qe~k~~~l~eA~r~~g~ElLlEiI~pk 178 (310)
T COG3892 117 FSGDIGSQLVEWPVEHVVKCLVFYHPDDPAELRAEQEQKLLELFEAARKSGHELLLEIILPK 178 (310)
T ss_pred cccchhhHHhcCcHhhheeeeeecCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 7788888888772 1333 33455667777777779999999874
No 37
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=20.92 E-value=97 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHhcCC--CHHHHHhh
Q 034049 57 TPSQIQLIRQHYHSKFGV--HLEDDIKR 82 (105)
Q Consensus 57 s~~~l~~i~~~Y~~~yg~--~L~~~I~~ 82 (105)
+.+++..|+++|+..|.. ++.+.+..
T Consensus 206 ~~e~i~alr~ayk~lfr~~~~~~e~~~~ 233 (260)
T COG1043 206 SREEIHALRKAYKLLFRSGLTLREALEE 233 (260)
T ss_pred CHHHHHHHHHHHHHHeeCCCCHHHHHHH
Confidence 568999999999998854 56665553
No 38
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.62 E-value=3.7e+02 Score=20.03 Aligned_cols=74 Identities=18% Similarity=0.381 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHHHcCCCh--HHHHHHHhhCCHHHHHHHHHHHH---HhcCCCHHHHHhhc-----cccccchh-hhcc
Q 034049 27 HDPAGRDAVVVRNSLTTGNL--KAATEVICSRTPSQIQLIRQHYH---SKFGVHLEDDIKRH-----TSGDHEKV-EYVS 95 (105)
Q Consensus 27 ~~~~~~dA~~L~~A~~g~gt--~~li~il~~rs~~~l~~i~~~Y~---~~yg~~L~~~I~~~-----~sG~~~~~-aL~~ 95 (105)
.+.|+.-|..|+ +|.|- .++-++|.-|.|-.++-+ ++|- .-+..+|.++++.. +.|.-|++ -++.
T Consensus 90 ~~dpq~iA~fly---kGEGLnKtaIG~yLGer~~~nl~vL-~aFv~~Hef~dlnlVqALRQfLwSFRLPGEaQKIdRmmE 165 (395)
T KOG0930|consen 90 QNDPEDIARFLY---KGEGLNKTAIGDYLGERDEFNLQVL-HAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMME 165 (395)
T ss_pred cCCHHHHHHHHH---hcCCcchhhHhhhhccCchhHHHHH-HHHHHHHHhccchHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344454565554 34454 778888888988777544 4444 45678888888854 46777777 3332
Q ss_pred cccccccccC
Q 034049 96 LLFYLRYCVC 105 (105)
Q Consensus 96 ~~~~~~~~~~ 105 (105)
.-.++||.|
T Consensus 166 -aFA~rYclc 174 (395)
T KOG0930|consen 166 -AFAQRYCLC 174 (395)
T ss_pred -HHHHHHhcc
Confidence 223556655
No 39
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.46 E-value=1.3e+02 Score=18.91 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHhcCC
Q 034049 56 RTPSQIQLIRQHYHSKFGV 74 (105)
Q Consensus 56 rs~~~l~~i~~~Y~~~yg~ 74 (105)
-.+.....|-++|..+|+.
T Consensus 78 ~d~~~~~~iD~AYr~KY~~ 96 (116)
T PF10012_consen 78 TDPALNDAIDAAYRAKYGG 96 (116)
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 4678888999999999998
No 40
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=20.06 E-value=1.1e+02 Score=20.30 Aligned_cols=25 Identities=8% Similarity=0.111 Sum_probs=15.2
Q ss_pred HHHHHHHhhCCH-HHHHHHHHHHHHh
Q 034049 47 KAATEVICSRTP-SQIQLIRQHYHSK 71 (105)
Q Consensus 47 ~~li~il~~rs~-~~l~~i~~~Y~~~ 71 (105)
.-++.+|+.+.. ..+..|.+.|.+.
T Consensus 72 ~nfl~lL~e~~R~~~l~~I~~~f~~l 97 (184)
T PRK13434 72 LNFLGVLLNKGRFIYLPEIQKDFTVE 97 (184)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 445566665433 5677777777654
Done!