BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034052
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 114 bits (285), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/90 (62%), Positives = 64/90 (71%), Gaps = 5/90 (5%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TVVT H+ ++HP Q RVLTIRE ARLQGFPDYYR FG +KE+Y QVGNAV + VAR
Sbjct: 672 TVVTRAEPHNQVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVAR 731
Query: 63 ALGYALGMAFQKLGNDE---PLMTLPPKFS 89
ALGY LG A+ LG E PL LPP F+
Sbjct: 732 ALGYCLGQAY--LGESEGSDPLYQLPPSFT 759
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 65/89 (73%), Gaps = 3/89 (3%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TVVT H+ ++HP Q RVLTIRE ARLQGFPDYYR FG +KE+Y QVGNAV + VAR
Sbjct: 672 TVVTRAEPHNQVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVAR 731
Query: 63 ALGYALGMAF--QKLGNDEPLMTLPPKFS 89
ALGY LG A+ + G+D PL LPP F+
Sbjct: 732 ALGYCLGQAYLGESEGSD-PLYQLPPSFT 759
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YRFFG + +R+ QVGNAVP
Sbjct: 1236 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPP 1295
Query: 60 VARALGYALGMAF 72
+A+A+G + +
Sbjct: 1296 LAKAIGLEIKLCL 1308
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YRFFG + +R+ QVGNAVP
Sbjct: 878 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPP 937
Query: 60 VARALGYALGMAF 72
+A+A+G + +
Sbjct: 938 LAKAIGLEIKLCL 950
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 15 VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
VLHPEQ RV+++RECAR QGFPD YRFFG + +R+ QVGNAVP +A+A+G + +
Sbjct: 812 VLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKLCL 869
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YR FG + +++ QVGNAVP
Sbjct: 926 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPP 985
Query: 60 VARALGYALGMA 71
+A+A+G + +
Sbjct: 986 LAKAIGLEIKLC 997
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YR FG + +++ QVGNAVP
Sbjct: 880 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPP 939
Query: 60 VARALGYALGMA 71
+A+A+G + +
Sbjct: 940 LAKAIGLEIKLC 951
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 9 SLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVA 61
S ++ +HP RV+T RE ARLQGFPD++RF T + Q+GN+V +VA
Sbjct: 304 SFQAVRPIHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVA 356
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 22 RVLTIRECARLQGFPDYYRF-FGTVKERYCQVGNAVPIVVARALGYALGMAFQ 73
R LT+RECAR+QGFPD + F + ++ + Y +GNAVP+ +A + + A +
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSALE 325
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 22 RVLTIRECARLQGFPDYYRF-FGTVKERYCQVGNAVPIVVARALGYALGMAF 72
R LT+RECAR+QGFPD + F + ++ + Y +GNAVP+ +A + + A
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL 324
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 22 RVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQ 73
R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 272 RKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLN 323
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 22 RVLTIRECARLQGFPDYYRFFG--TVKERYCQVGNAVPI-VVARAL 64
R T +E A L GFP + F TVK+RY +GN++ + VVA+ +
Sbjct: 293 RYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLI 338
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 35 FPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQKL 75
F DYYR + GN +P++ A +G A+G A +K+
Sbjct: 202 FADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMGNASEKV 242
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 22 RVLTIRECARLQGF--PDYYRFFGTVK--ERYCQVGNA 55
R LT RECARL GF P +F V + Y Q GN+
Sbjct: 402 RRLTPRECARLXGFEAPGEAKFRIPVSDTQAYRQFGNS 439
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 22 RVLTIRECARLQGF--PDYYRFFGTVK--ERYCQVGNA 55
R LT RECARL GF P +F V + Y Q GN+
Sbjct: 340 RRLTPRECARLXGFEAPGEAKFRIPVSDTQAYRQFGNS 377
>pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
pdb|3EOL|B Chain B, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
Length = 433
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 19 EQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYA 67
E ++LT R Q F DY G E + QV N + +ARA+ YA
Sbjct: 230 EAAKLLTSDIDERDQPFVDYEA--GRTAEGFYQVKNGIEPCIARAIAYA 276
>pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|B Chain B, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|C Chain C, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|D Chain D, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3OQ8|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3P0X|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
Length = 433
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 19 EQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYA 67
E ++LT R Q F DY G E + QV N + +ARA+ YA
Sbjct: 230 EAAKLLTSDIDERDQPFVDYEA--GRTAEGFYQVKNGIEPCIARAIAYA 276
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 63 ALGYALGMAFQKLGNDEPLMTLPP 86
A G+ G LGNDEP ++L P
Sbjct: 288 ASGFDNGFTVLSLGNDEPTLSLDP 311
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 63 ALGYALGMAFQKLGNDEPLMTLPP 86
A G+ G LGNDEP ++L P
Sbjct: 288 ASGFDNGFTVLSLGNDEPTLSLDP 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,053,414
Number of Sequences: 62578
Number of extensions: 112393
Number of successful extensions: 298
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 29
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)