BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034052
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 144 bits (363), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/98 (66%), Positives = 80/98 (81%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TV+T P+ HS A+LHPEQDRVLTIRE ARLQGFPDY++F GT+KERYCQ+GNAV + V+R
Sbjct: 1196 TVLTVPTCHSQALLHPEQDRVLTIRESARLQGFPDYFQFCGTIKERYCQIGNAVAVSVSR 1255
Query: 63 ALGYALGMAFQKLGNDEPLMTLPPKFSLSTNLQLAKSL 100
ALGY+LGMAF+ L DE L+ LP FS ST QL +++
Sbjct: 1256 ALGYSLGMAFRGLARDEHLIKLPQNFSHSTYPQLQETI 1293
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/90 (62%), Positives = 64/90 (71%), Gaps = 5/90 (5%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TVVT H+ ++HP Q RVLTIRE ARLQGFPDYYR FG +KE+Y QVGNAV + VAR
Sbjct: 800 TVVTRAEPHNQVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVAR 859
Query: 63 ALGYALGMAFQKLGNDE---PLMTLPPKFS 89
ALGY LG A+ LG E PL LPP F+
Sbjct: 860 ALGYCLGQAY--LGESEGSDPLYQLPPSFT 887
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/89 (59%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TVVT H+ ++HPEQ+RVL+IRE ARLQGFPD Y+ FG K++Y QVGNAV + VA+
Sbjct: 741 TVVTRAEPHNQVIIHPEQNRVLSIRENARLQGFPDDYKLFGPPKQKYIQVGNAVAVPVAK 800
Query: 63 ALGYALGMAFQKLG-NDEPLMTLPPKFSL 90
ALGYALG AFQ L +PL+TLP F+
Sbjct: 801 ALGYALGTAFQGLAVGKDPLLTLPEGFAF 829
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%)
Query: 1 MTTVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVV 60
+ TVVT H+ V+HP Q+RVL++RE ARLQGFPD Y+ GT+KE+Y QVGNAV + V
Sbjct: 694 VNTVVTRAEPHNQCVIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAVAVPV 753
Query: 61 ARALGYALGMAFQKLGNDEPLMTLPPKF 88
ALGYA GMA Q L +DEP++ LP K+
Sbjct: 754 GVALGYAFGMASQGLTDDEPVIKLPFKY 781
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TVVT H+ +LHP Q RVLTIRE ARLQGFPDYYR FG +KE+Y QVGNAV + VAR
Sbjct: 804 TVVTRAEPHNQVILHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVAR 863
Query: 63 ALGYALGMAF-QKLGNDEPLMTLPPKFS 89
ALGY LG A+ + +PL LP F+
Sbjct: 864 ALGYCLGQAYLGESDGSQPLYQLPASFT 891
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TVVT H+ +LHP Q RVLTIRE ARLQGFPDYYR FG +KE+Y QVGNAV + VAR
Sbjct: 804 TVVTRAEPHNQVILHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVAR 863
Query: 63 ALGYALGMAF-QKLGNDEPLMTLPPKFS 89
ALGY LG A+ + +PL LP F+
Sbjct: 864 ALGYCLGQAYLGESDGSQPLYQLPASFT 891
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 15 VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQ- 73
VLHPEQ RV+++RECAR QGFPD YRFFG++ +++ Q+GNAVP +A A+G + + Q
Sbjct: 1530 VLHPEQHRVVSVRECARSQGFPDTYRFFGSILDKHRQIGNAVPPPMAAAIGMEIKVCLQT 1589
Query: 74 KLGNDEPLMTLPP 86
K D+ L P
Sbjct: 1590 KTKRDQERAALEP 1602
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YRFFG + +R+ QVGNAVP
Sbjct: 1526 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPP 1585
Query: 60 VARALGYALGMAF 72
+A+A+G + +
Sbjct: 1586 LAKAIGLEIKLCL 1598
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMA 71
HPEQDR++T+RECAR QGFPD YRF G ++ ++ Q+GNAVP +A ALG L A
Sbjct: 1467 FHPEQDRIITVRECARSQGFPDSYRFAGNIQNKHRQIGNAVPPPLAYALGRKLKQA 1522
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YR FG + +R+ QVGNAVP
Sbjct: 1528 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRHRQVGNAVPPP 1587
Query: 60 VARALGYALGMAF 72
+A+A+G + +
Sbjct: 1588 LAKAIGLEIKLCL 1600
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YR FG + +++ QVGNAVP
Sbjct: 1524 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPP 1583
Query: 60 VARALGYALGMAF 72
+A+A+G + +
Sbjct: 1584 LAKAIGLEIKLCM 1596
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1
Length = 1611
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 42/51 (82%)
Query: 15 VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALG 65
VLHPEQ RV+++RECAR QGFPD YR FG + +++ QVGNAVP +A+A+G
Sbjct: 1535 VLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1585
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 2 TTVVTFPSLHSMA--VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIV 59
+T VT P VLHPEQ RV+++RECAR QGFPD YR FG + +++ QVGNAVP
Sbjct: 1438 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPP 1497
Query: 60 VARALGYAL 68
+A+A+G +
Sbjct: 1498 LAKAIGLEI 1506
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 42/56 (75%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMA 71
HP+QDR++T+RECAR QGFPD Y+F G ++ ++ Q+GNAVP +A ALG L A
Sbjct: 1468 FHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVPPPLAFALGRKLKEA 1523
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 39/58 (67%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQ 73
HPEQ R+LT+RECAR QGFPD Y F G + ++ Q+GNAVP +A ALG L A
Sbjct: 1468 FHPEQHRILTVRECARSQGFPDSYEFAGNINHKHRQIGNAVPPPLAFALGRKLKEALH 1525
>sp|P23737|MTS9_STAAU Modification methylase Sau96I OS=Staphylococcus aureus GN=sau96IM
PE=3 SV=1
Length = 430
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
T+ T PS HP++ R +IRE AR+Q FPD + F G V +Y Q+GNAVP+ +A+
Sbjct: 357 TLTTSPSQKQTERCHPDETRPFSIREYARIQSFPDEWEFSGGVGAQYRQIGNAVPVNLAK 416
Query: 63 ALGYAL 68
+G +L
Sbjct: 417 YIGKSL 422
>sp|O33481|MTP1_PSYTA Modification methylase PspPI OS=Psychrobacter sp. (strain TA137)
GN=pspPIM PE=3 SV=1
Length = 416
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
T+V P+ HP + R LT RE AR+Q FPD + F G+V + Y Q+GNAVP+ +A
Sbjct: 338 TLVCTPAQKQTERCHPSESRPLTTREYARIQTFPDDWEFKGSVGQIYKQIGNAVPVNLAL 397
Query: 63 ALGYAL 68
A+G A+
Sbjct: 398 AIGKAI 403
>sp|P52311|MTX2_XANOR Modification methylase XorII OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=xorIIM PE=3 SV=2
Length = 424
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQK 74
+HP RV+T+RE ARL +PD++RF T + Q+GN+VP ++ARA+G + A +K
Sbjct: 308 IHPTVPRVITVREAARLHSYPDWFRFHATKWHGFRQIGNSVPPLLARAVGGQIMKALRK 366
>sp|P50196|MTE8_ECOLX Modification methylase Eco47II OS=Escherichia coli GN=eco47IIM PE=3
SV=1
Length = 417
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
T+ P+ HPE+ R LT+RE AR+Q FPD + F G + +Y Q+GNAVP+ ++
Sbjct: 342 TLTCAPAQKQTERCHPEETRPLTVREYARIQTFPDEWVFEGPMSAKYKQIGNAVPVNLSF 401
Query: 63 ALGYAL 68
A+G ++
Sbjct: 402 AVGKSV 407
>sp|Q58600|MT52_METJA Probable modification methylase MJ1200 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1200 PE=3 SV=1
Length = 366
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALG 65
+HP +DR+LT RE ARL +PDY+ F G ++ Y Q+G +VP+ ++RA+
Sbjct: 309 IHPYEDRLLTPREQARLMSYPDYHLFAGGIRSCYNQIGESVPVALSRAIA 358
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
TVV + +HP DR +++RE AR Q FPD YRF G+ ++ Q+GNAVP ++ R
Sbjct: 359 TVVAHMARDCSDFVHPGIDRFVSVREAARFQSFPDTYRFPGSQFRQFRQIGNAVPPLLGR 418
Query: 63 ALGYALGMAF 72
A+ + +A
Sbjct: 419 AMAETIKVAI 428
>sp|O52702|MTA1_ACEPA Modification methylase ApaLI OS=Acetobacter pasteurianus GN=apaLIM
PE=3 SV=1
Length = 429
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYAL 68
+HP + R LTIRECAR+Q FPD YR+ G Q+GNAVP + A L L
Sbjct: 324 IHPTEHRPLTIRECARIQTFPDKYRWVGNNASVIQQIGNAVPPLAAERLAKHL 376
>sp|Q8EL95|MT36_OCEIH Putative modification methylase OB3336 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB3336 PE=3 SV=1
Length = 460
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
T+V S + + LHP + R +++RE ARLQ FPD + F ++ + Q+GNAVP ++A+
Sbjct: 386 TLVAHLSTDTYSHLHPREPRGISVREAARLQSFPDDFLFDCSMGAAFKQIGNAVPPLLAK 445
Query: 63 ALGYALGMAFQ 73
A+ A+ Q
Sbjct: 446 AIAEAMKKNIQ 456
>sp|Q57983|MT51_METJA Probable modification methylase MJ0563 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0563 PE=3 SV=1
Length = 310
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALG 65
+HP +DR+LT+RE ARL +PD + FFG +Y Q+G +VP ++ RA+
Sbjct: 254 IHPYEDRLLTVREQARLMSYPDDFVFFGGRDVQYNQIGESVPPILGRAIA 303
>sp|P50192|MTHA_HAEPH Modification methylase HphIA OS=Haemophilus parahaemolyticus
GN=hphIAM PE=3 SV=1
Length = 372
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 15 VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYAL 68
V H EQ+R LT+RE A LQ FPD + F G + QVGNAVP ++A+A+ A+
Sbjct: 312 VFHYEQNRALTVRELAALQSFPDDFVFLGKKIAQQQQVGNAVPPLLAQAIAEAV 365
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 11 HSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARAL 64
H + V+H + R +T RECARLQGFPD ++F Y Q GN+V + V +A+
Sbjct: 353 HKIGVVHQNRIRRITPRECARLQGFPDSFQFHPKDSLAYRQFGNSVSVPVVKAV 406
>sp|P31033|MTM4_NEIGO Modification methylase NgoMIV OS=Neisseria gonorrhoeae GN=ngoMIVM
PE=3 SV=1
Length = 312
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 24 LTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQK 74
LT+R AR+QGFPD ++FFG Y Q+GNA P VA A+G + A +K
Sbjct: 260 LTVRMTARIQGFPDDWQFFGKKTPMYRQIGNAFPPPVAEAVGRQIIKALKK 310
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Query: 22 RVLTIRECARLQGFPDYYRFFGT-VKERYCQVGNAVPIVVA 61
R L+IRECAR+QGFPD ++F+ T +++ Y VGNAVP+ +A
Sbjct: 276 RRLSIRECARIQGFPDTFKFYYTSLEDGYKMVGNAVPVDLA 316
>sp|P29567|MTHT_METTF Modification methylase MthTI OS=Methanobacterium thermoformicicum
GN=mthTIM PE=3 SV=1
Length = 330
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 18 PEQDRVLTIRECARLQGFPDYYRF-FGTVKERYCQVGNAVPIVVARALG 65
P+ R L++RECAR+QGFPD + F + V + Y VGNAVP+ +A L
Sbjct: 270 PKPYRRLSVRECARIQGFPDDFIFYYKNVADGYTMVGNAVPVKLAEELA 318
>sp|P25265|MTD2_HERAU Modification methylase HgiDII OS=Herpetosiphon aurantiacus
GN=hgiDIIM PE=3 SV=1
Length = 354
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 17 HPEQDRVLTIRECARLQGFPDYYRF-------FGTVKERYCQVGNAVPIVVARALGYAL 68
HPEQDR +++RE A LQ FP Y+F F TV Q+GNAVP+ + R + ++
Sbjct: 282 HPEQDRAISLREAALLQTFPRSYQFAPEGQLKFKTVSR---QIGNAVPVALGRVIAKSI 337
>sp|P09795|MTS1_SALIN Modification methylase SinI OS=Salmonella infantis GN=sinIM PE=3
SV=1
Length = 461
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 3 TVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVAR 62
T+VT P++ + + HP++ R L+++E +Q FP+ + G + ++Y Q+GNAVPI +
Sbjct: 363 TLVTHPAMPATDLAHPDELRPLSVQEYKVIQQFPEEWVIKGKLLDKYRQLGNAVPIGLGL 422
Query: 63 ALG 65
A+G
Sbjct: 423 AVG 425
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 22 RVLTIRECARLQGFPDYYRF-FGTVKERYCQVGNAVPIVVARALGYALGMAFQK 74
R +T+RE AR+QGFPD ++F + V + Y +GNAVP+ +A + A+ ++
Sbjct: 277 RRMTVREVARIQGFPDNFKFIYQNVNDAYKMIGNAVPVNLAYEIAAAIKKTLER 330
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 22 RVLTIRECARLQGFPDYYRF-FGTVKERYCQVGNAVPIVVARALGYALGMAFQ 73
R LT+RECAR+QGFPD + F + ++ + Y +GNAVP+ +A + + A +
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSALE 325
>sp|P34883|MTAB_SYNP2 Modification methylase AquI subunit beta OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMB PE=3
SV=1
Length = 139
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYC-----------QVGNAVPIVVARAL 64
+HP +DR+LT+RE A LQ FP + F GT + Y QVGNAVP ++A A+
Sbjct: 65 IHPFEDRMLTVRELACLQTFPLDWEFTGTRLDSYSSKRKVTMTQFGQVGNAVPPLLAEAV 124
Query: 65 GYALG 69
A+
Sbjct: 125 AKAVS 129
>sp|P05302|MTD1_DESNO Modification methylase DdeI OS=Desulfomicrobium norvegicum (strain
DSM 1741 / NCIMB 8310) GN=ddeIM PE=3 SV=1
Length = 415
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVK--------ERYCQVGNAVPIVVARALGYA 67
+HP +R T RE AR+Q FPD Y F G +Y Q+GNAVP ++A+AL
Sbjct: 306 IHPFYNRNFTAREGARIQSFPDTYIFQGKRTTMSWEKHLSQYQQIGNAVPPLLAQALAER 365
Query: 68 LGMAFQKL 75
+ F+ +
Sbjct: 366 ISWYFENI 373
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 22 RVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALG 65
RVLT RECARLQGFP+ + + + + Q GN+VP+ V RA+
Sbjct: 259 RVLTPRECARLQGFPESFVIPVSDCQAWRQFGNSVPVSVIRAIA 302
>sp|P13906|MTB1_LYSSH Modification methylase BspRI OS=Lysinibacillus sphaericus GN=bspRIM
PE=1 SV=3
Length = 424
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 19 EQDRVLTIRECARLQGFPDYYRFF--GTVK--------ERYCQVGNAVPIVVARALGYAL 68
E R L+++E R+Q FPD+Y F G +K ++Y Q+GNAVP+ +ARA+ ++
Sbjct: 342 ENHRRLSVKEIKRIQTFPDWYEFSDGGNMKVSVNNRLDKQYKQIGNAVPVFLARAVAKSI 401
Query: 69 G-MAFQKLGNDEP 80
A L ++ P
Sbjct: 402 AQFAADYLKDNHP 414
>sp|P06530|MTBR_BACIU Modification methylase BsuRI OS=Bacillus subtilis GN=hsdRM PE=3
SV=1
Length = 436
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 10/57 (17%)
Query: 19 EQDRVLTIRECARLQGFPDYYRFF-GT---------VKERYCQVGNAVPIVVARALG 65
E R L+++E AR+Q FPD+++F GT + ++Y Q+GNAVP+++A+A+
Sbjct: 343 ENHRRLSVKEIARVQTFPDWFQFSQGTNSQTSINNRLDKQYKQIGNAVPVLLAKAVA 399
>sp|Q59606|MTF7_NEIGO Modification methylase NgoFVII OS=Neisseria gonorrhoeae GN=ngoFVIIM
PE=3 SV=1
Length = 374
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 17 HPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVP 57
H + R T RE ARLQ FPD + F G+ E Q+GNAVP
Sbjct: 286 HFPEPRAFTNRERARLQSFPDDFEFVGSTTEVRRQIGNAVP 326
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 1 MTTVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVV 60
++ +T H + V+ R +T RECARLQGFPD + Y Q+GN+V + V
Sbjct: 343 ISITLTSSDAHKLGVVQNNVPRRITPRECARLQGFPDDFILHSNDNFAYKQLGNSVTVKV 402
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus
GN=hhaIM PE=1 SV=1
Length = 327
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 20 QDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAF 72
+ R L RECAR+ G+PD Y+ + + Y Q GN+V I V + + Y +G +
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
>sp|P25264|MTC2_HERAU Modification methylase HgiCII OS=Herpetosiphon aurantiacus
GN=hgiCIIM PE=3 SV=1
Length = 437
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 15 VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYAL 68
+L P++ R +T+ E AR+QGFP ++F + +GN+V V ALG AL
Sbjct: 371 ILIPKRHRPITVNEAARIQGFPATFKFHSNQSANFRLIGNSVAPPVIMALGKAL 424
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 15 VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYAL 68
VL P++ R +T+ E ARLQGFP ++F + +GN+V V ALG AL
Sbjct: 371 VLIPKRYRKITVSEAARLQGFPGSFQFHSNQSANFRLIGNSVAPPVIVALGKAL 424
>sp|P34905|MTB1_BREBE Modification methylase BbvI OS=Brevibacillus brevis GN=bbvIM PE=3
SV=1
Length = 374
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 17 HPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQKL 75
H E+ R LT RE ARLQ FPD Y F G + Q+G AVP A+ + A+ F ++
Sbjct: 289 HWEEPRALTNRERARLQTFPDDYEFIGKKEMVRKQIGMAVPPDGAKIILEAVLKTFARI 347
>sp|P25266|MTE1_HERAU Modification methylase HgiEI OS=Herpetosiphon aurantiacus GN=hgiEIM
PE=3 SV=1
Length = 437
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 15 VLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAV--PIVVA 61
VL P++ R +T+ E ARLQGFP ++F + +GN+V P++VA
Sbjct: 371 VLIPKRYRPITVSEAARLQGFPSTFKFHSNQSANFRLIGNSVAPPVIVA 419
>sp|P10283|MTB1_BREEP Modification methylase BepI OS=Brevibacterium epidermidis GN=bepIM
PE=3 SV=1
Length = 403
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 12 SMAVLHPEQDRVLTIRECARLQGFPDYYRF---FG-----TVKERYCQVGNAVPIVVARA 63
+++ LH Q R LT+RECA +Q FP Y F +G + Y +GNAVP ++ A
Sbjct: 330 NLSELHLPQRR-LTVRECALIQSFPPDYEFVFNYGKANSVSASAAYKIIGNAVPPLLGFA 388
Query: 64 LGYALGMAFQKL 75
+G L + KL
Sbjct: 389 IGRHLSQIWDKL 400
>sp|P15446|MTH2_HAEPA Modification methylase HpaII OS=Haemophilus parainfluenzae
GN=hpaIIM PE=1 SV=1
Length = 358
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 8 PSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYA 67
P+ + ++ E R +T RE ARLQGFPD Y + Y Q GN+V + +A G
Sbjct: 289 PTTNIKGEVNREGIRKMTPREWARLQGFPDSYVIPVSDASAYKQFGNSVAVPAIQATGKK 348
Query: 68 LGMAFQKLGN 77
+ +KLGN
Sbjct: 349 I---LEKLGN 355
>sp|O31073|MTS1_STRAH Modification methylase SacI OS=Streptomyces achromogenes GN=sacIM
PE=3 SV=1
Length = 390
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 19 EQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPI----VVARALGYALG 69
E+ R + E R+ FPD + F G +E Q+GN VP+ VV RAL LG
Sbjct: 315 ERARRFRVAEMKRIMTFPDEFVFTGVKREVQRQIGNPVPVELGKVVVRALMEQLG 369
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 16 LHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQ--VGNAVP 57
+H R +T E AR+Q FPD++ FG ++ R Q +GNAVP
Sbjct: 372 VHSLLKRTITPHEAARIQFFPDFFN-FGDLRRRQYQDVIGNAVP 414
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 22 RVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQKLGN 77
R +T E ARLQGFPD ++ + + Y Q GN+V + V RA+ + A + +
Sbjct: 255 RKITPPEAARLQGFPDSFQIPVSDAQAYRQFGNSVCVPVIRAIAEQMKAALSAVSD 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,400,046
Number of Sequences: 539616
Number of extensions: 1414422
Number of successful extensions: 3622
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3550
Number of HSP's gapped (non-prelim): 72
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)