Query 034052
Match_columns 105
No_of_seqs 135 out of 1120
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ft4_B DNA (cytosine-5)-methyl 99.9 8.8E-27 3E-31 196.2 8.1 92 1-92 670-762 (784)
2 3g7u_A Cytosine-specific methy 99.9 1.2E-24 4.1E-29 172.3 6.2 74 1-74 291-369 (376)
3 2c7p_A Modification methylase 99.9 8.8E-23 3E-27 158.9 6.2 74 1-74 248-324 (327)
4 3ubt_Y Modification methylase 99.9 1.4E-22 4.6E-27 154.6 5.1 64 15-78 266-330 (331)
5 3av4_A DNA (cytosine-5)-methyl 99.8 4.1E-21 1.4E-25 171.1 7.3 65 12-76 1248-1312(1330)
6 3swr_A DNA (cytosine-5)-methyl 99.8 3.6E-20 1.2E-24 161.7 7.6 65 10-74 936-1000(1002)
7 1g55_A DNA cytosine methyltran 99.8 4.7E-21 1.6E-25 149.4 0.8 56 14-69 285-342 (343)
8 3qv2_A 5-cytosine DNA methyltr 99.7 2.4E-18 8.1E-23 134.3 4.3 59 15-73 265-326 (327)
9 2qrv_A DNA (cytosine-5)-methyl 99.7 7.5E-19 2.6E-23 135.5 1.3 59 15-73 233-293 (295)
10 4dkj_A Cytosine-specific methy 99.7 2.3E-19 7.9E-24 143.7 -1.7 75 1-75 315-395 (403)
11 4h0n_A DNMT2; SAH binding, tra 99.7 4.4E-17 1.5E-21 127.2 4.9 54 16-69 277-332 (333)
12 3me5_A Cytosine-specific methy 99.7 1.4E-16 4.7E-21 130.2 7.2 58 19-76 399-460 (482)
13 3fbz_A ORF140, putative unchar 38.4 31 0.0011 23.2 3.3 28 46-73 20-47 (140)
14 2c55_A Protein P6; HIV-1, P6-G 26.5 20 0.00067 20.6 0.7 8 96-103 40-47 (52)
No 1
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.93 E-value=8.8e-27 Score=196.21 Aligned_cols=92 Identities=58% Similarity=0.951 Sum_probs=84.6
Q ss_pred CceeeccCCCCCCccccCCCcccccHHHHhhhcCCCCCceecCChHhHHhhhcccccHHHHHHHHHHHHHHHHhcC-CCC
Q 034052 1 MTTVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQKLG-NDE 79 (105)
Q Consensus 1 ~pTItT~~~~~~~~~ihp~~~R~lT~rE~arLQgFPd~f~~~~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~~~-~~~ 79 (105)
+|||||..+...+.++||.+.|+||+|||||||||||+|.|.|+.+++|+||||||||+|+++||++|+++|.+.. +.+
T Consensus 670 s~TItt~~~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~Gs~~~~ykQIGNAVpp~lA~aIg~~I~~al~~~~~~~~ 749 (784)
T 4ft4_B 670 VPTVVTRAEPHNQVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQAYLGESEGSD 749 (784)
T ss_dssp CSCCCSCCCSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCCCSCHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred ccceeccccCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEeCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHcCcCcccC
Confidence 4899999887778899999999999999999999999999999999999999999999999999999999999876 567
Q ss_pred CCcCCCCCCchhh
Q 034052 80 PLMTLPPKFSLST 92 (105)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (105)
|+..+|.+++...
T Consensus 750 ~~~~~p~~~~~~~ 762 (784)
T 4ft4_B 750 PLYQLPPSFTSVG 762 (784)
T ss_dssp SEECCCSSSSCCC
T ss_pred hhhhcCCCCCccc
Confidence 9999998876543
No 2
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.90 E-value=1.2e-24 Score=172.33 Aligned_cols=74 Identities=35% Similarity=0.500 Sum_probs=62.9
Q ss_pred CceeeccCCCC-----CCccccCCCcccccHHHHhhhcCCCCCceecCChHhHHhhhcccccHHHHHHHHHHHHHHHHh
Q 034052 1 MTTVVTFPSLH-----SMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQK 74 (105)
Q Consensus 1 ~pTItT~~~~~-----~~~~ihp~~~R~lT~rE~arLQgFPd~f~~~~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~ 74 (105)
+|||||..... +++++||.++|.||+||+||||||||+|.|.|+.+++|+||||||||.++++||+.|++.|++
T Consensus 291 s~Ti~~~~~~~~g~~~~~r~~HP~~~R~lTvRE~ARlQsFPD~f~f~g~~~~~~~qIGNAVPp~la~aia~~I~~~l~~ 369 (376)
T 3g7u_A 291 CPTLRAGTARDKGSFQAVRPIHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYILKGLYNLLNE 369 (376)
T ss_dssp BCCC-------------CCCBCSSSSSBCCHHHHHHHHTCCTTCCCCSSHHHHHHHHHTSCCHHHHHHHHHHHHHHHTC
T ss_pred CCceecCcCCCCCcccCccccCCccCcCCCHHHHHHhCCCCcceEECCChHHhheeeecCCCHHHHHHHHHHHHHHHHh
Confidence 48999875422 356799999999999999999999999999999999999999999999999999999999875
No 3
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.87 E-value=8.8e-23 Score=158.94 Aligned_cols=74 Identities=30% Similarity=0.515 Sum_probs=66.1
Q ss_pred CceeeccCC---CCCCccccCCCcccccHHHHhhhcCCCCCceecCChHhHHhhhcccccHHHHHHHHHHHHHHHHh
Q 034052 1 MTTVVTFPS---LHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQK 74 (105)
Q Consensus 1 ~pTItT~~~---~~~~~~ihp~~~R~lT~rE~arLQgFPd~f~~~~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~ 74 (105)
+|||||..+ ...+..+|+.+.|.||+|||||||||||+|.|.++.+++|+||||||||+++++||+.|.+.|..
T Consensus 248 ~~Ti~~~~~~~~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~l~~ 324 (327)
T 2c7p_A 248 AITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNF 324 (327)
T ss_dssp BCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCCCSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCceecCCCCccCCCCccCCCCCCcCCCHHHHHHHCCCCcCcEeCCCHHHHHhHccCCCCHHHHHHHHHHHHHHHhc
Confidence 479988732 23345788999999999999999999999999999999999999999999999999999999875
No 4
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.86 E-value=1.4e-22 Score=154.59 Aligned_cols=64 Identities=34% Similarity=0.581 Sum_probs=56.8
Q ss_pred cccCCCcccccHHHHhhhcCCCCCceec-CChHhHHhhhcccccHHHHHHHHHHHHHHHHhcCCC
Q 034052 15 VLHPEQDRVLTIRECARLQGFPDYYRFF-GTVKERYCQVGNAVPIVVARALGYALGMAFQKLGND 78 (105)
Q Consensus 15 ~ihp~~~R~lT~rE~arLQgFPd~f~~~-~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~~~~~ 78 (105)
..|+...|.||+|||||||||||+|.|+ ++.+++|+||||||||+|+++||+.|+++|+...++
T Consensus 266 ~~~~~~~R~LT~rE~aRLQgFPd~f~f~~~s~~~~ykqiGNAVpp~la~~I~~~I~~~L~~~~~n 330 (331)
T 3ubt_Y 266 EGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSALEICKGN 330 (331)
T ss_dssp TTCGGGCCBCBHHHHHHHHTCCTTCCCCCSBHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHCC--
T ss_pred CCCCCcCcCCCHHHHHHhCCCCCCCEeCCCCHHHHhhhCccCccHHHHHHHHHHHHHHHhhhhcC
Confidence 3466778999999999999999999996 689999999999999999999999999999865543
No 5
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.83 E-value=4.1e-21 Score=171.09 Aligned_cols=65 Identities=52% Similarity=0.899 Sum_probs=61.3
Q ss_pred CCccccCCCcccccHHHHhhhcCCCCCceecCChHhHHhhhcccccHHHHHHHHHHHHHHHHhcC
Q 034052 12 SMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQKLG 76 (105)
Q Consensus 12 ~~~~ihp~~~R~lT~rE~arLQgFPd~f~~~~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~~~ 76 (105)
.+.++||.+.|.||+||+||||||||+|.|.|+.+++|+||||||||+|+++||+.|.++|....
T Consensus 1248 ~g~~iHP~q~R~LTVREaARLQsFPDdF~F~Gs~t~~yrQIGNAVPPlLAkAIA~~I~~~L~~~~ 1312 (1330)
T 3av4_A 1248 QGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKLCLLSSA 1312 (1330)
T ss_dssp SCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCccccccCCHHHHHHhcCCCCCeEECCCHhhhhEEeEeCcCHHHHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999988643
No 6
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.80 E-value=3.6e-20 Score=161.73 Aligned_cols=65 Identities=49% Similarity=0.848 Sum_probs=62.1
Q ss_pred CCCCccccCCCcccccHHHHhhhcCCCCCceecCChHhHHhhhcccccHHHHHHHHHHHHHHHHh
Q 034052 10 LHSMAVLHPEQDRVLTIRECARLQGFPDYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQK 74 (105)
Q Consensus 10 ~~~~~~ihp~~~R~lT~rE~arLQgFPd~f~~~~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~ 74 (105)
...++++||.++|.||+||+||||||||+|.|.|+.+++|+||||||||+++++||+.|.++|..
T Consensus 936 ~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~g~~~~~~~qiGNaVp~~~~~~i~~~i~~~l~~ 1000 (1002)
T 3swr_A 936 GKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLA 1000 (1002)
T ss_dssp CTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCcccccCCCHHHHHHhCCCCcceEEcCChHHHheeeeccCCHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999999999999999999999999999999999999999999999876
No 7
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.80 E-value=4.7e-21 Score=149.45 Aligned_cols=56 Identities=36% Similarity=0.401 Sum_probs=52.7
Q ss_pred ccccCCCcccccHHHHhhhcCCCCCceecC--ChHhHHhhhcccccHHHHHHHHHHHH
Q 034052 14 AVLHPEQDRVLTIRECARLQGFPDYYRFFG--TVKERYCQVGNAVPIVVARALGYALG 69 (105)
Q Consensus 14 ~~ihp~~~R~lT~rE~arLQgFPd~f~~~~--s~~~~~k~iGNaVp~~v~~~I~~~l~ 69 (105)
..+||.+.|+||+|||||||||||+|.|++ +.+++|+||||||||+|+++|++.|.
T Consensus 285 ~~~h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l~ 342 (343)
T 1g55_A 285 TKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 342 (343)
T ss_dssp HHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred eccCCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHh
Confidence 456999999999999999999999999997 89999999999999999999999875
No 8
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.72 E-value=2.4e-18 Score=134.28 Aligned_cols=59 Identities=25% Similarity=0.234 Sum_probs=54.3
Q ss_pred cccCCCcccccHHHHhhhcCCCCCceec---CChHhHHhhhcccccHHHHHHHHHHHHHHHH
Q 034052 15 VLHPEQDRVLTIRECARLQGFPDYYRFF---GTVKERYCQVGNAVPIVVARALGYALGMAFQ 73 (105)
Q Consensus 15 ~ihp~~~R~lT~rE~arLQgFPd~f~~~---~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~ 73 (105)
.+|+.+.|+||++||+|||||||+|.++ .+.+++|+|+||||||+++++|++.|.+.|+
T Consensus 265 ~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l~ 326 (327)
T 3qv2_A 265 DLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDLK 326 (327)
T ss_dssp GGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTSC
T ss_pred eecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHhc
Confidence 4488899999999999999999999998 5899999999999999999999999977653
No 9
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.72 E-value=7.5e-19 Score=135.55 Aligned_cols=59 Identities=27% Similarity=0.305 Sum_probs=53.7
Q ss_pred cccCCCcccccHHHHhhhcCCCCCceecC--ChHhHHhhhcccccHHHHHHHHHHHHHHHH
Q 034052 15 VLHPEQDRVLTIRECARLQGFPDYYRFFG--TVKERYCQVGNAVPIVVARALGYALGMAFQ 73 (105)
Q Consensus 15 ~ihp~~~R~lT~rE~arLQgFPd~f~~~~--s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~ 73 (105)
.+|+.+.|+||++||+|||||||+|.|.+ +.+++|+|+||||||+++++|++.|.++|.
T Consensus 233 ~~~~~~~R~lt~rE~arlqgFPd~~~~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~ 293 (295)
T 2qrv_A 233 VFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA 293 (295)
T ss_dssp EEETTEEECCCHHHHHHHHTCCTTTTCCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred cccCCCcCCCCHHHHHHHcCCCHHHeeCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence 46888999999999999999999999998 459999999999999999999999987653
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.72 E-value=2.3e-19 Score=143.69 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=60.7
Q ss_pred CceeeccCCCCCCccccCCCcccccHHHHhhhcCCCC-Cceec-----CChHhHHhhhcccccHHHHHHHHHHHHHHHHh
Q 034052 1 MTTVVTFPSLHSMAVLHPEQDRVLTIRECARLQGFPD-YYRFF-----GTVKERYCQVGNAVPIVVARALGYALGMAFQK 74 (105)
Q Consensus 1 ~pTItT~~~~~~~~~ihp~~~R~lT~rE~arLQgFPd-~f~~~-----~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~ 74 (105)
+|||||+.......+++..+.|+||+|||+||||||| +|.+. .+.+++|+|+||||+|+|+++|++.|+++|.+
T Consensus 315 ~~Tlt~~~~~~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~ 394 (403)
T 4dkj_A 315 GPTLTASGANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE 394 (403)
T ss_dssp BCCCCSSSGGGSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred ccceecCCCCceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence 4788885321111234567899999999999999999 79886 59999999999999999999999998877665
Q ss_pred c
Q 034052 75 L 75 (105)
Q Consensus 75 ~ 75 (105)
.
T Consensus 395 ~ 395 (403)
T 4dkj_A 395 E 395 (403)
T ss_dssp -
T ss_pred c
Confidence 4
No 11
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.66 E-value=4.4e-17 Score=127.25 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=50.3
Q ss_pred ccCCCcccccHHHHhhhcCCCCCceecC--ChHhHHhhhcccccHHHHHHHHHHHH
Q 034052 16 LHPEQDRVLTIRECARLQGFPDYYRFFG--TVKERYCQVGNAVPIVVARALGYALG 69 (105)
Q Consensus 16 ihp~~~R~lT~rE~arLQgFPd~f~~~~--s~~~~~k~iGNaVp~~v~~~I~~~l~ 69 (105)
+|+.+.|+||++||+|||||||+|.+++ +.+++|+|+||||+|+++++|++.|.
T Consensus 277 ~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~ 332 (333)
T 4h0n_A 277 FKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF 332 (333)
T ss_dssp HHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred ccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 3678999999999999999999999984 88999999999999999999999875
No 12
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.65 E-value=1.4e-16 Score=130.16 Aligned_cols=58 Identities=34% Similarity=0.441 Sum_probs=53.4
Q ss_pred CCcccccHHHHhhhcCCC----CCceecCChHhHHhhhcccccHHHHHHHHHHHHHHHHhcC
Q 034052 19 EQDRVLTIRECARLQGFP----DYYRFFGTVKERYCQVGNAVPIVVARALGYALGMAFQKLG 76 (105)
Q Consensus 19 ~~~R~lT~rE~arLQgFP----d~f~~~~s~~~~~k~iGNaVp~~v~~~I~~~l~~~l~~~~ 76 (105)
...|+|||+||+|||||| ++|.+.++.+++|+|+||||||+++++|++.|.+.+....
T Consensus 399 ~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GNsV~v~v~~~i~~~l~~~l~~~~ 460 (482)
T 3me5_A 399 HRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQAV 460 (482)
T ss_dssp GCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCCccChHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999 6788889999999999999999999999999999887644
No 13
>3fbz_A ORF140, putative uncharacterized protein; archaeal virus, extremophiles, lipothrixviridae, structural protein; HET: BOG; 2.30A {Acidianus filamentous virus 1}
Probab=38.36 E-value=31 Score=23.20 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=22.6
Q ss_pred HhHHhhhcccccHHHHHHHHHHHHHHHH
Q 034052 46 KERYCQVGNAVPIVVARALGYALGMAFQ 73 (105)
Q Consensus 46 ~~~~k~iGNaVp~~v~~~I~~~l~~~l~ 73 (105)
.=.|+-+|.-||+.|+..+-..+-..+.
T Consensus 20 ~Yi~R~iGGiiP~dMA~sVT~~~TA~W~ 47 (140)
T 3fbz_A 20 LYLWRNLGGLIPEDMAISVTESITADWK 47 (140)
T ss_dssp HGGGTTCBCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHhhhHhhhHH
Confidence 4467779999999999999888766554
No 14
>2c55_A Protein P6; HIV-1, P6-GAG, AIDS, core protein, lipoprotein, membrane, metal-binding, myristate, phosphorylation, polyprotein; NMR {Human immunodeficiency virus type 1}
Probab=26.53 E-value=20 Score=20.57 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=5.5
Q ss_pred HHHhhccC
Q 034052 96 LAKSLFQG 103 (105)
Q Consensus 96 ~~~~~~~~ 103 (105)
-.||||..
T Consensus 40 SLkSLFGn 47 (52)
T 2c55_A 40 SLRSLFGS 47 (52)
T ss_dssp GGGTGGGC
T ss_pred chhhhcCC
Confidence 45899853
Done!