BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034055
         (105 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P55554|Y4LN_RHISN Uncharacterized protein y4lN OS=Rhizobium sp. (strain NGR234)
          GN=NGR_a02620 PE=4 SV=1
          Length = 160

 Score = 33.9 bits (76), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFE 92
          A V  +L  LVAV  +S FL++  QK+ R E Y R  KLFE
Sbjct: 52 ANVAAILTPLVAVLAYSRFLWERRQKRLRLESYLREQKLFE 92


>sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor 1 OS=Mus musculus
           GN=Pear1 PE=1 SV=1
          Length = 1034

 Score = 33.5 bits (75), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 46  SRGNTGAKVGIVLLGLVAVGLFSFFL-FKLWQKKKREEQYA 85
           +  + GA +GI +LG + V L + F+ ++ WQK K  E  A
Sbjct: 750 THNSLGAVIGIAVLGTLVVALIALFIGYRQWQKGKEHEHLA 790


>sp|Q8K5A9|NRADD_RAT Death domain-containing membrane protein NRADD OS=Rattus
          norvegicus GN=Nradd PE=1 SV=2
          Length = 228

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 53 KVGIVLLGLVAVGLFSFFLFKLWQKKKREEQY--ARLLKLFEED 94
           V   LL  V +GL ++  FK W+ +K+ +Q   AR ++L + D
Sbjct: 55 PVYCALLATVVLGLLAYVAFKCWRSRKQRQQLAKARTVELGDPD 98


>sp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana
           GN=SRF8 PE=2 SV=1
          Length = 703

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 25  PAISDDPSSTKK---GKQSAAHHTSRGNTGAKV-GIVLLGLVAVGLFSFFLFKLWQKKKR 80
           P   + PS +KK   G +  +  + +G +G  V GIV   L   G+ +  L+    KKKR
Sbjct: 258 PGKKETPSGSKKPKIGSEEKSSDSGKGLSGGVVTGIVFGSLFVAGIIALVLYLCLHKKKR 317

Query: 81  E 81
           +
Sbjct: 318 K 318


>sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor 1 OS=Homo sapiens
           GN=PEAR1 PE=1 SV=1
          Length = 1037

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 51  GAKVGIVLLGLVAVGLFSFFL-FKLWQKKKREEQYA 85
           GA +GI +LG + V L + F+ ++ WQK K     A
Sbjct: 756 GAVIGIAVLGSLVVALVALFIGYRHWQKGKEHHHLA 791


>sp|P49573|CTR1_YEAST Copper transport protein CTR1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=CTR1 PE=1 SV=1
          Length = 406

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 43  HHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLW-------QKKKREEQYARLLKLFEEDD 95
           HH    N+G   GI LL +VA  ++   LF  W       +K  ++ +Y+ L     +D+
Sbjct: 143 HHLHANNSGKAFGIFLLFVVAAFVYKLLLFVSWCLEVHWFKKWDKQNKYSTLPSANSKDE 202


>sp|Q0VQP5|MSBA_ALCBS Lipid A export ATP-binding/permease protein MsbA OS=Alcanivorax
           borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
           GN=msbA PE=3 SV=1
          Length = 582

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 42  AHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQ 76
           A   +   T A + I+  GL  +GLFSF L++ W+
Sbjct: 132 AQQVTSAGTDAIIVIIREGLTVIGLFSFLLWQNWK 166


>sp|P40433|6P21_YEAST 6-phosphofructo-2-kinase 1 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=PFK26 PE=1 SV=1
          Length = 827

 Score = 29.3 bits (64), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 25  PAISDDPSSTKKGKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQY 84
           P   D P  TK  K S     S+ ++G+K+ IV++GL A G  SF   KL +       Y
Sbjct: 156 PTTIDVPGLTKS-KTSPDGLISKEDSGSKLVIVMVGLPATGK-SFITNKLSRFLNYSLYY 213

Query: 85  ARLLKLFEEDDELEVELGLRD 105
            ++  +     +   E GL+D
Sbjct: 214 CKVFNVGNTRRKFAKEHGLKD 234


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,438,122
Number of Sequences: 539616
Number of extensions: 1354057
Number of successful extensions: 4165
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4137
Number of HSP's gapped (non-prelim): 50
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)