Query 034055
Match_columns 105
No_of_seqs 34 out of 36
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 09:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08114 PMP1_2: ATPase proteo 97.8 4.2E-05 9.1E-10 48.4 4.4 35 50-84 8-42 (43)
2 PF06679 DUF1180: Protein of u 96.5 0.0022 4.7E-08 48.7 2.9 30 52-82 95-124 (163)
3 PF01102 Glycophorin_A: Glycop 94.6 0.049 1.1E-06 39.7 3.7 47 47-95 59-107 (122)
4 PF04689 S1FA: DNA binding pro 94.5 0.062 1.3E-06 36.9 3.7 31 47-77 9-40 (69)
5 PF10883 DUF2681: Protein of u 94.2 0.15 3.3E-06 35.6 5.3 30 59-88 7-36 (87)
6 PF06305 DUF1049: Protein of u 93.4 0.24 5.2E-06 30.4 4.7 35 54-88 23-57 (68)
7 COG4736 CcoQ Cbb3-type cytochr 93.0 0.14 3E-06 33.8 3.3 37 65-102 21-57 (60)
8 PF14981 FAM165: FAM165 family 91.7 0.42 9E-06 31.3 4.2 30 58-87 12-42 (51)
9 PHA03265 envelope glycoprotein 91.5 0.19 4.2E-06 43.4 3.3 39 47-85 343-382 (402)
10 COG2976 Uncharacterized protei 91.4 0.34 7.4E-06 38.7 4.3 30 62-91 29-64 (207)
11 PF12669 P12: Virus attachment 90.1 0.41 8.9E-06 30.6 3.1 11 70-80 16-26 (58)
12 PF07010 Endomucin: Endomucin; 89.8 0.4 8.6E-06 39.6 3.5 27 52-78 191-217 (259)
13 PF02404 SCF: Stem cell factor 89.6 0.1 2.2E-06 43.2 0.0 28 58-85 220-247 (273)
14 PF11669 WBP-1: WW domain-bind 89.5 0.71 1.5E-05 32.2 4.2 26 62-87 30-55 (102)
15 PF15345 TMEM51: Transmembrane 89.3 0.95 2.1E-05 36.7 5.3 65 21-85 26-91 (233)
16 PF06365 CD34_antigen: CD34/Po 89.2 0.56 1.2E-05 36.9 3.8 37 51-87 100-137 (202)
17 PF02699 YajC: Preprotein tran 88.5 0.65 1.4E-05 30.9 3.3 26 71-96 17-42 (82)
18 PF00558 Vpu: Vpu protein; In 88.4 0.39 8.4E-06 33.4 2.2 22 69-90 24-45 (81)
19 PF08693 SKG6: Transmembrane a 88.0 0.14 3.1E-06 31.7 -0.2 12 68-79 29-40 (40)
20 TIGR02797 exbB tonB-system ene 87.3 1.4 3E-05 33.4 4.8 45 55-99 16-60 (211)
21 PF05795 Plasmodium_Vir: Plasm 87.0 0.42 9.1E-06 35.8 1.9 37 56-92 286-324 (354)
22 PRK10414 biopolymer transport 86.7 1.5 3.2E-05 34.6 4.9 46 54-99 25-70 (244)
23 PF09835 DUF2062: Uncharacteri 84.9 1.7 3.6E-05 30.6 3.9 28 59-86 127-154 (154)
24 PTZ00270 variable surface prot 84.2 0.63 1.4E-05 37.9 1.7 28 47-74 264-291 (333)
25 PF06864 PAP_PilO: Pilin acces 83.9 1.7 3.6E-05 35.7 4.0 20 65-84 176-195 (414)
26 PF11368 DUF3169: Protein of u 83.8 1.6 3.5E-05 33.3 3.7 10 92-101 82-91 (248)
27 PF07047 OPA3: Optic atrophy 3 83.2 3.5 7.5E-05 29.6 5.0 41 60-100 82-127 (134)
28 PRK12785 fliL flagellar basal 83.2 0.21 4.5E-06 36.8 -1.3 29 51-79 23-51 (166)
29 PF14316 DUF4381: Domain of un 83.1 3.6 7.7E-05 29.2 5.0 15 64-78 34-48 (146)
30 COG2165 PulG Type II secretory 83.0 3.1 6.7E-05 26.8 4.3 7 56-62 19-25 (149)
31 PRK10801 colicin uptake protei 82.7 2.7 5.9E-05 32.5 4.6 40 54-93 16-55 (227)
32 PF09716 ETRAMP: Malarial earl 82.5 2.2 4.7E-05 28.8 3.6 31 49-79 51-82 (84)
33 PF04478 Mid2: Mid2 like cell 82.3 0.28 6.1E-06 37.6 -0.9 28 53-80 50-79 (154)
34 PRK00888 ftsB cell division pr 81.9 4.8 0.00011 28.0 5.2 13 63-75 8-20 (105)
35 PF14283 DUF4366: Domain of un 81.4 0.068 1.5E-06 41.8 -4.6 28 56-83 163-190 (218)
36 PF06724 DUF1206: Domain of Un 81.3 3.1 6.8E-05 26.4 3.8 25 51-75 45-69 (73)
37 PF14316 DUF4381: Domain of un 80.9 4.2 9.1E-05 28.8 4.7 40 52-91 19-58 (146)
38 PF12575 DUF3753: Protein of u 80.4 2.3 5E-05 29.2 3.1 25 47-71 41-65 (72)
39 KOG3839 Lectin VIP36, involved 80.2 0.36 7.8E-06 41.2 -1.1 37 50-87 314-350 (351)
40 TIGR03064 sortase_srtB sortase 80.1 3.1 6.6E-05 32.6 4.1 27 69-95 20-46 (232)
41 TIGR03141 cytochro_ccmD heme e 79.6 7.2 0.00016 23.5 4.8 30 59-88 12-41 (45)
42 PF11431 Transport_MerF: Membr 79.1 2 4.4E-05 27.5 2.3 14 68-81 33-46 (46)
43 PRK06531 yajC preprotein trans 78.6 3.5 7.5E-05 29.8 3.7 23 74-96 20-42 (113)
44 PF06024 DUF912: Nucleopolyhed 78.6 2.9 6.3E-05 28.8 3.2 24 49-72 59-82 (101)
45 PF04375 HemX: HemX; InterPro 78.2 12 0.00026 30.6 7.1 15 72-86 47-61 (372)
46 PF14610 DUF4448: Protein of u 78.0 1.7 3.7E-05 31.9 2.1 30 51-80 156-186 (189)
47 PF10883 DUF2681: Protein of u 77.8 6.4 0.00014 27.5 4.7 25 56-80 7-31 (87)
48 PF06097 DUF945: Bacterial pro 77.2 5.3 0.00011 31.5 4.7 44 55-98 4-47 (460)
49 PRK07021 fliL flagellar basal 77.0 5 0.00011 29.2 4.2 28 51-78 15-42 (162)
50 PRK05886 yajC preprotein trans 76.2 6.5 0.00014 28.3 4.5 21 76-96 24-44 (109)
51 PF05545 FixQ: Cbb3-type cytoc 75.9 3.8 8.3E-05 24.6 2.8 23 64-86 20-42 (49)
52 TIGR00739 yajC preprotein tran 75.8 5.7 0.00012 26.8 3.9 21 76-96 23-43 (84)
53 PF11337 DUF3139: Protein of u 75.1 7 0.00015 25.7 4.2 35 53-89 5-45 (85)
54 PF02937 COX6C: Cytochrome c o 74.5 10 0.00022 25.5 4.9 42 58-99 21-62 (73)
55 PF04639 Baculo_E56: Baculovir 74.1 0.61 1.3E-05 39.2 -1.3 33 46-78 272-304 (305)
56 TIGR02796 tolQ TolQ protein. T 73.7 7.7 0.00017 29.5 4.7 40 55-94 16-55 (215)
57 COG4965 TadB Flp pilus assembl 72.7 8.4 0.00018 32.1 5.0 39 57-95 5-44 (309)
58 PLN03150 hypothetical protein; 72.2 3.6 7.7E-05 35.5 2.8 32 49-80 542-573 (623)
59 PF09402 MSC: Man1-Src1p-C-ter 72.2 0.53 1.1E-05 36.6 -2.0 29 56-84 220-248 (334)
60 PF04995 CcmD: Heme exporter p 72.1 15 0.00032 22.1 4.7 32 56-87 8-39 (46)
61 PRK07718 fliL flagellar basal 71.9 1.8 3.9E-05 31.1 0.8 31 54-84 6-36 (142)
62 PRK13415 flagella biosynthesis 71.3 5.2 0.00011 32.1 3.4 19 59-77 73-91 (219)
63 PF03606 DcuC: C4-dicarboxylat 71.3 6.6 0.00014 32.9 4.1 35 63-97 207-244 (465)
64 PF06697 DUF1191: Protein of u 71.2 9.9 0.00021 31.4 5.0 27 58-84 220-248 (278)
65 PF12072 DUF3552: Domain of un 70.6 10 0.00022 28.5 4.6 25 56-80 5-29 (201)
66 PF02480 Herpes_gE: Alphaherpe 70.5 1.4 3E-05 37.5 0.0 12 50-61 350-361 (439)
67 PF15361 RIC3: Resistance to i 70.3 4.4 9.5E-05 30.1 2.6 32 50-81 77-110 (152)
68 TIGR01167 LPXTG_anchor LPXTG-m 70.2 4.6 9.9E-05 22.0 2.1 10 70-79 24-33 (34)
69 PF12868 DUF3824: Domain of un 69.6 6.2 0.00014 29.3 3.3 22 59-81 12-33 (137)
70 PF02009 Rifin_STEVOR: Rifin/s 69.6 5.2 0.00011 32.9 3.1 36 58-93 262-299 (299)
71 PF06024 DUF912: Nucleopolyhed 69.6 12 0.00025 25.8 4.4 26 50-75 57-82 (101)
72 PRK05585 yajC preprotein trans 69.4 12 0.00026 26.4 4.5 20 77-96 39-58 (106)
73 PF05283 MGC-24: Multi-glycosy 69.3 8 0.00017 30.1 3.9 14 63-76 172-185 (186)
74 PRK08455 fliL flagellar basal 68.6 4.5 9.8E-05 30.6 2.4 13 60-72 27-39 (182)
75 PRK11273 glpT sn-glycerol-3-ph 68.3 4 8.7E-05 31.9 2.1 20 63-82 425-444 (452)
76 PF11780 DUF3318: Protein of u 67.9 5.1 0.00011 29.8 2.5 18 63-80 109-126 (146)
77 cd00927 Cyt_c_Oxidase_VIc Cyto 66.9 21 0.00047 24.2 5.2 42 58-99 19-60 (70)
78 PF13908 Shisa: Wnt and FGF in 66.9 2.6 5.7E-05 30.6 0.8 6 73-78 102-107 (179)
79 KOG3054 Uncharacterized conser 66.7 6.8 0.00015 33.1 3.3 28 55-82 3-30 (299)
80 PF13498 DUF4122: Domain of un 66.4 9.8 0.00021 31.0 4.0 23 65-87 11-33 (220)
81 PF03229 Alpha_GJ: Alphavirus 65.9 32 0.0007 26.0 6.4 32 50-81 82-113 (126)
82 PF02060 ISK_Channel: Slow vol 65.4 8.8 0.00019 29.0 3.3 15 75-89 87-101 (129)
83 PF13491 DUF4117: Domain of un 65.1 24 0.00053 24.5 5.3 69 18-87 18-93 (171)
84 PF00558 Vpu: Vpu protein; In 65.0 7.9 0.00017 26.9 2.8 34 60-93 12-45 (81)
85 PF02687 FtsX: FtsX-like perme 64.3 13 0.00027 23.1 3.5 23 59-81 7-29 (121)
86 PHA03099 epidermal growth fact 63.9 2.6 5.6E-05 32.2 0.3 36 47-82 98-133 (139)
87 KOG2533 Permease of the major 63.6 9.2 0.0002 32.7 3.6 33 55-87 440-472 (495)
88 PF11014 DUF2852: Protein of u 63.6 7.4 0.00016 28.6 2.6 31 50-80 8-40 (115)
89 PF12301 CD99L2: CD99 antigen 63.5 12 0.00025 28.7 3.8 15 65-79 128-142 (169)
90 PF02009 Rifin_STEVOR: Rifin/s 63.5 12 0.00026 30.7 4.1 37 53-89 262-298 (299)
91 PRK10506 hypothetical protein; 63.4 20 0.00044 25.9 4.8 28 64-91 26-53 (162)
92 COG2959 HemX Uncharacterized e 63.3 20 0.00043 31.3 5.5 31 49-79 28-58 (391)
93 PRK11677 hypothetical protein; 63.1 7.7 0.00017 28.7 2.6 23 54-76 3-25 (134)
94 PF01299 Lamp: Lysosome-associ 63.0 2.7 5.8E-05 33.0 0.3 29 53-81 271-301 (306)
95 PF02656 DUF202: Domain of unk 62.9 17 0.00038 22.6 3.9 17 62-78 55-71 (73)
96 TIGR01477 RIFIN variant surfac 62.5 6.1 0.00013 33.7 2.3 19 75-93 335-353 (353)
97 PF05568 ASFV_J13L: African sw 62.4 12 0.00026 29.7 3.8 24 52-75 29-52 (189)
98 PRK15117 ABC transporter perip 62.2 7.2 0.00016 29.7 2.4 26 67-93 74-99 (211)
99 PF04882 Peroxin-3: Peroxin-3; 62.0 5.2 0.00011 33.6 1.8 22 62-83 19-40 (432)
100 PRK05696 fliL flagellar basal 61.9 17 0.00036 26.6 4.2 22 51-72 18-39 (170)
101 PF02480 Herpes_gE: Alphaherpe 61.1 2.7 5.9E-05 35.7 0.0 14 68-81 373-386 (439)
102 PF10176 DUF2370: Protein of u 60.9 27 0.00059 28.2 5.6 35 48-82 189-223 (233)
103 PF12072 DUF3552: Domain of un 60.8 21 0.00045 26.8 4.6 20 55-74 1-20 (201)
104 PRK10847 hypothetical protein; 60.5 11 0.00025 28.3 3.2 15 70-84 203-217 (219)
105 PF13584 BatD: Oxygen toleranc 60.3 8 0.00017 31.5 2.5 27 56-82 428-454 (484)
106 PRK01844 hypothetical protein; 60.2 9.6 0.00021 26.2 2.5 15 57-71 7-21 (72)
107 PTZ00046 rifin; Provisional 60.1 6.6 0.00014 33.5 2.1 19 75-93 340-358 (358)
108 PF15330 SIT: SHP2-interacting 60.0 15 0.00033 26.0 3.6 21 66-86 13-33 (107)
109 KOG4782 Predicted membrane pro 59.7 8.2 0.00018 28.5 2.3 36 54-101 59-94 (108)
110 PF10969 DUF2771: Protein of u 59.4 13 0.00029 27.7 3.4 27 52-78 1-27 (161)
111 PRK01741 cell division protein 59.0 13 0.00028 31.5 3.7 30 52-83 3-32 (332)
112 PF06143 Baculo_11_kDa: Baculo 59.0 27 0.00059 24.5 4.7 10 80-89 70-79 (84)
113 PF06022 Cir_Bir_Yir: Plasmodi 58.9 4.6 9.9E-05 32.6 0.9 30 44-73 251-280 (280)
114 PRK03427 cell division protein 58.3 6 0.00013 33.4 1.5 25 56-80 7-31 (333)
115 PF06295 DUF1043: Protein of u 58.2 16 0.00035 26.0 3.5 21 58-78 3-23 (128)
116 PF14015 DUF4231: Protein of u 57.9 34 0.00074 22.3 4.8 23 51-73 50-72 (112)
117 PF12729 4HB_MCP_1: Four helix 57.7 39 0.00085 21.7 5.0 18 59-76 12-29 (181)
118 PF10828 DUF2570: Protein of u 57.4 32 0.00069 23.7 4.8 23 54-76 4-26 (110)
119 KOG2792 Putative cytochrome C 57.2 21 0.00046 29.9 4.5 29 58-86 77-106 (280)
120 PF10855 DUF2648: Protein of u 56.9 8.6 0.00019 23.3 1.6 20 62-81 8-27 (33)
121 PHA02650 hypothetical protein; 56.6 8.5 0.00018 27.2 1.8 28 47-74 45-72 (81)
122 PF06212 GRIM-19: GRIM-19 prot 56.5 31 0.00067 25.3 4.8 32 50-81 27-58 (130)
123 KOG4550 Predicted membrane pro 56.5 11 0.00024 34.2 2.9 18 63-80 572-589 (606)
124 PF03896 TRAP_alpha: Transloco 54.1 16 0.00034 29.9 3.3 33 50-82 204-236 (285)
125 COG3088 CcmH Uncharacterized p 53.7 17 0.00037 28.0 3.2 44 50-93 102-152 (153)
126 PRK11387 S-methylmethionine tr 53.7 12 0.00025 30.3 2.5 22 65-86 445-467 (471)
127 PF12273 RCR: Chitin synthesis 53.6 18 0.00039 25.2 3.1 26 55-80 4-29 (130)
128 PTZ00382 Variant-specific surf 53.2 5 0.00011 27.7 0.2 13 47-59 62-74 (96)
129 KOG3300 NADH:ubiquinone oxidor 53.2 35 0.00075 26.4 4.8 17 85-101 84-100 (146)
130 TIGR02205 septum_zipA cell div 53.1 5.3 0.00012 32.6 0.4 26 52-79 2-27 (284)
131 PF03918 CcmH: Cytochrome C bi 53.1 4.5 9.7E-05 29.9 0.0 36 49-84 97-132 (148)
132 COG2165 PulG Type II secretory 52.5 37 0.0008 21.8 4.2 14 55-68 15-28 (149)
133 PF01034 Syndecan: Syndecan do 52.3 4.2 9.1E-05 27.4 -0.2 17 63-82 25-41 (64)
134 PF14584 DUF4446: Protein of u 52.3 54 0.0012 24.4 5.6 44 56-100 4-47 (151)
135 PHA02898 virion envelope prote 52.3 21 0.00045 25.8 3.2 25 54-78 47-71 (92)
136 TIGR03521 GldG gliding-associa 52.2 20 0.00042 30.8 3.7 17 64-80 534-550 (552)
137 PF14126 DUF4293: Domain of un 52.1 73 0.0016 23.3 6.2 6 67-72 69-74 (149)
138 PHA03048 IMV membrane protein; 51.7 18 0.00039 26.1 2.9 26 53-78 45-70 (93)
139 PRK00523 hypothetical protein; 51.5 25 0.00055 24.1 3.5 18 55-72 6-23 (72)
140 PRK00523 hypothetical protein; 51.4 17 0.00037 25.0 2.6 30 50-79 4-33 (72)
141 PF14155 DUF4307: Domain of un 51.4 19 0.0004 25.2 2.9 24 55-78 6-29 (112)
142 PTZ00230 variable surface prot 51.3 14 0.0003 31.0 2.6 28 46-74 286-313 (364)
143 TIGR01495 ETRAMP Plasmodium ri 51.3 24 0.00053 24.3 3.4 10 22-31 18-27 (85)
144 PF13131 DUF3951: Protein of u 50.9 11 0.00024 24.9 1.6 27 54-80 6-32 (53)
145 PHA02680 ORF090 IMV phosphoryl 50.2 19 0.00041 25.9 2.8 26 54-79 48-73 (91)
146 PF14163 SieB: Superinfection 50.1 59 0.0013 23.0 5.3 11 75-85 63-73 (151)
147 PF07954 DUF1689: Protein of u 50.0 43 0.00093 25.3 4.8 42 52-93 68-117 (152)
148 TIGR02736 cbb3_Q_epsi cytochro 49.8 18 0.00038 24.0 2.4 36 65-101 9-49 (56)
149 PRK10920 putative uroporphyrin 49.5 90 0.0019 26.6 7.1 12 74-85 56-67 (390)
150 PF01102 Glycophorin_A: Glycop 49.3 10 0.00022 27.7 1.3 41 41-81 57-98 (122)
151 TIGR02889 spore_YpeB germinati 49.2 45 0.00097 28.7 5.4 42 61-102 9-56 (435)
152 PF06667 PspB: Phage shock pro 49.2 43 0.00093 22.7 4.3 19 81-99 38-56 (75)
153 TIGR03481 HpnM hopanoid biosyn 48.8 16 0.00036 27.5 2.5 25 68-93 71-95 (198)
154 PRK04335 cell division protein 48.8 11 0.00024 31.5 1.6 24 56-79 6-29 (313)
155 PRK01844 hypothetical protein; 47.9 38 0.00083 23.3 3.9 29 50-78 3-31 (72)
156 PF07006 DUF1310: Protein of u 47.6 3.2 7E-05 30.1 -1.4 22 53-74 2-23 (122)
157 PRK11360 sensory histidine kin 47.2 24 0.00053 27.1 3.1 30 51-80 7-36 (607)
158 PRK10747 putative protoheme IX 47.0 67 0.0015 25.7 5.7 6 26-31 20-25 (398)
159 PF12158 DUF3592: Protein of u 47.0 61 0.0013 21.5 4.7 10 68-77 20-29 (148)
160 PHA02844 putative transmembran 47.0 28 0.00061 24.2 3.2 12 61-72 55-66 (75)
161 PHA02975 hypothetical protein; 46.9 17 0.00037 25.0 2.0 10 48-57 41-50 (69)
162 PRK10381 LPS O-antigen length 46.6 26 0.00056 29.1 3.5 29 52-80 337-367 (377)
163 PF11446 DUF2897: Protein of u 46.2 18 0.00039 23.3 2.0 24 54-77 5-28 (55)
164 PHA02088 hypothetical protein 46.0 48 0.001 24.9 4.5 22 64-85 14-36 (125)
165 PF08374 Protocadherin: Protoc 46.0 25 0.00055 28.5 3.2 26 51-76 36-64 (221)
166 PHA02047 phage lambda Rz1-like 45.9 52 0.0011 24.1 4.5 16 59-75 9-28 (101)
167 PF14880 COX14: Cytochrome oxi 45.6 59 0.0013 20.5 4.3 12 67-78 32-43 (59)
168 COG1580 FliL Flagellar basal b 45.5 37 0.0008 25.6 3.9 32 47-79 12-43 (159)
169 PF06724 DUF1206: Domain of Un 45.3 47 0.001 20.9 3.8 31 50-80 41-71 (73)
170 PF10960 DUF2762: Protein of u 45.1 48 0.001 22.2 4.0 22 60-81 13-34 (71)
171 PF15099 PIRT: Phosphoinositid 44.3 29 0.00064 26.2 3.2 16 70-85 100-115 (129)
172 PF10587 EF-1_beta_acid: Eukar 44.2 7.2 0.00016 22.8 -0.1 11 90-100 1-11 (28)
173 KOG3850 Predicted membrane pro 43.8 29 0.00064 30.8 3.5 49 12-77 395-443 (455)
174 COG5353 Uncharacterized protei 43.2 29 0.00063 27.1 3.1 24 56-79 9-32 (161)
175 PF02430 AMA-1: Apical membran 43.2 8.8 0.00019 34.1 0.3 23 60-82 439-463 (471)
176 TIGR02976 phageshock_pspB phag 43.1 62 0.0013 21.9 4.3 31 68-98 19-55 (75)
177 PRK08808 general secretion pat 42.9 51 0.0011 25.7 4.4 15 73-87 34-48 (211)
178 PF04431 Pec_lyase_N: Pectate 42.8 25 0.00054 22.8 2.3 19 73-92 7-25 (56)
179 PRK07946 putative monovalent c 42.8 25 0.00054 27.1 2.6 23 57-79 81-103 (163)
180 PHA02819 hypothetical protein; 42.7 34 0.00074 23.6 3.0 12 61-72 53-64 (71)
181 PF03672 UPF0154: Uncharacteri 42.6 59 0.0013 21.8 4.1 11 67-77 14-24 (64)
182 PF15055 DUF4536: Domain of un 42.4 15 0.00033 23.3 1.2 16 67-82 14-29 (47)
183 PF11694 DUF3290: Protein of u 42.0 30 0.00065 25.7 2.9 17 63-79 26-42 (149)
184 PRK06975 bifunctional uroporph 41.8 1.2E+02 0.0026 26.9 7.0 21 58-78 328-348 (656)
185 PLN00028 nitrate transmembrane 41.7 7.2 0.00016 31.2 -0.4 33 68-103 430-467 (476)
186 TIGR01708 typeII_sec_gspH gene 41.1 53 0.0011 22.5 3.8 21 70-90 27-48 (143)
187 COG5294 Uncharacterized protei 41.1 7.6 0.00016 28.7 -0.4 21 52-72 2-22 (113)
188 PRK10263 DNA translocase FtsK; 40.8 71 0.0015 31.9 5.8 62 16-78 34-101 (1355)
189 PF06864 PAP_PilO: Pilin acces 40.3 47 0.001 27.3 4.1 31 57-87 171-201 (414)
190 PF09577 Spore_YpjB: Sporulati 39.7 51 0.0011 26.3 4.0 31 54-85 199-229 (232)
191 PRK04778 septation ring format 39.3 67 0.0014 27.7 4.9 27 56-83 4-30 (569)
192 PF04854 DUF624: Protein of un 39.3 40 0.00087 21.0 2.8 25 58-82 15-39 (77)
193 PRK11049 D-alanine/D-serine/gl 39.1 32 0.00069 27.9 2.9 17 66-82 450-466 (469)
194 PF14575 EphA2_TM: Ephrin type 39.0 8.1 0.00018 25.6 -0.5 25 57-81 6-30 (75)
195 PTZ00473 Plasmodium Vir superf 38.9 60 0.0013 28.7 4.6 24 51-74 266-289 (420)
196 KOG4628 Predicted E3 ubiquitin 38.7 61 0.0013 27.6 4.5 25 54-78 172-196 (348)
197 PF09835 DUF2062: Uncharacteri 38.6 42 0.0009 23.5 3.1 31 51-82 123-153 (154)
198 PF08294 TIM21: TIM21; InterP 38.3 28 0.00062 25.5 2.3 50 54-103 12-62 (145)
199 PF07219 HemY_N: HemY protein 38.0 82 0.0018 21.2 4.3 8 79-86 55-62 (108)
200 PRK10920 putative uroporphyrin 37.9 98 0.0021 26.4 5.6 36 47-82 32-67 (390)
201 KOG3251 Golgi SNAP receptor co 37.8 28 0.00061 28.0 2.3 19 58-76 195-213 (213)
202 PF02076 STE3: Pheromone A rec 37.8 63 0.0014 25.8 4.3 24 59-82 159-182 (283)
203 PHA02692 hypothetical protein; 37.8 27 0.00057 24.1 1.9 11 47-57 41-51 (70)
204 TIGR01477 RIFIN variant surfac 37.7 40 0.00086 28.9 3.3 35 55-89 318-352 (353)
205 PTZ00046 rifin; Provisional 37.7 38 0.00083 29.0 3.2 35 55-89 323-357 (358)
206 PRK08126 hypothetical protein; 37.7 63 0.0014 27.6 4.5 39 52-90 243-281 (432)
207 PF11743 DUF3301: Protein of u 37.7 89 0.0019 21.3 4.5 23 63-85 4-26 (97)
208 TIGR03142 cytochro_ccmI cytoch 37.6 52 0.0011 22.7 3.4 20 55-74 94-113 (117)
209 PTZ00087 thrombosponding-relat 37.5 45 0.00098 28.7 3.6 37 47-83 291-327 (340)
210 PF12158 DUF3592: Protein of u 37.2 46 0.001 22.0 3.0 28 54-81 2-29 (148)
211 TIGR03758 conj_TIGR03758 integ 36.7 34 0.00073 22.9 2.2 32 53-84 18-55 (65)
212 PTZ00100 DnaJ chaperone protei 36.5 58 0.0013 23.6 3.6 24 57-80 6-29 (116)
213 PRK10772 cell division protein 36.5 64 0.0014 23.2 3.8 45 53-101 24-68 (108)
214 PF08763 Ca_chan_IQ: Voltage g 36.4 58 0.0013 19.7 3.0 13 67-79 11-23 (35)
215 PF15102 TMEM154: TMEM154 prot 36.2 4.7 0.0001 30.7 -2.1 7 54-60 58-64 (146)
216 PF07406 NICE-3: NICE-3 protei 36.1 55 0.0012 25.2 3.6 19 49-67 8-27 (186)
217 KOG4764 Uncharacterized conser 36.1 13 0.00028 25.7 0.2 12 88-99 10-21 (70)
218 PF04917 Shufflon_N: Bacterial 36.1 86 0.0019 26.3 5.0 39 55-93 13-52 (356)
219 PF00662 Oxidored_q1_N: NADH-U 35.5 60 0.0013 19.9 3.1 34 57-91 27-60 (62)
220 PLN00113 leucine-rich repeat r 35.2 38 0.00082 29.5 2.8 7 72-78 649-655 (968)
221 PF12923 RRP7: Ribosomal RNA-p 35.0 41 0.00089 24.0 2.6 25 71-95 92-116 (131)
222 PF14017 DUF4233: Protein of u 34.9 80 0.0017 22.4 4.0 24 63-86 83-106 (107)
223 TIGR02854 spore_II_GA sigma-E 34.9 51 0.0011 26.2 3.4 30 55-84 128-157 (288)
224 KOG3335 Predicted coiled-coil 34.8 13 0.00029 29.4 0.0 34 65-98 81-119 (181)
225 PF05454 DAG1: Dystroglycan (D 34.8 13 0.00028 30.6 0.0 9 82-90 181-189 (290)
226 PRK07033 hypothetical protein; 34.4 70 0.0015 27.1 4.3 38 53-90 229-266 (427)
227 PF13703 PepSY_TM_2: PepSY-ass 34.3 40 0.00086 21.9 2.3 24 54-77 18-41 (88)
228 PF13400 Tad: Putative Flp pil 34.2 74 0.0016 18.6 3.2 14 71-84 23-36 (48)
229 PRK09173 F0F1 ATP synthase sub 34.1 1.5E+02 0.0033 20.9 5.3 16 60-75 7-23 (159)
230 PF04375 HemX: HemX; InterPro 34.0 1.1E+02 0.0023 25.2 5.1 30 48-77 26-55 (372)
231 PF15145 DUF4577: Domain of un 33.8 44 0.00094 25.4 2.7 38 60-99 71-108 (128)
232 PF06210 DUF1003: Protein of u 33.8 1.7E+02 0.0037 20.7 6.0 67 8-85 2-68 (108)
233 PF13314 DUF4083: Domain of un 33.7 1.5E+02 0.0032 19.8 5.5 14 81-94 45-58 (58)
234 COG1346 LrgB Putative effector 33.6 44 0.00096 27.1 2.9 49 50-99 59-123 (230)
235 PF14719 PID_2: Phosphotyrosin 33.5 39 0.00085 26.1 2.5 19 69-87 120-138 (182)
236 COG1289 Predicted membrane pro 33.5 68 0.0015 27.9 4.1 69 11-93 452-520 (674)
237 PF07543 PGA2: Protein traffic 33.5 1.3E+02 0.0028 22.3 5.1 14 76-89 42-55 (140)
238 PF07271 Cytadhesin_P30: Cytad 33.5 42 0.0009 28.2 2.7 44 54-102 72-117 (279)
239 KOG4403 Cell surface glycoprot 33.4 78 0.0017 28.9 4.5 22 72-93 232-253 (575)
240 PRK01770 sec-independent trans 33.0 78 0.0017 24.5 4.0 6 74-79 34-39 (171)
241 PRK09458 pspB phage shock prot 32.9 57 0.0012 22.5 2.9 29 71-99 23-56 (75)
242 PF13994 PgaD: PgaD-like prote 32.6 41 0.00089 23.9 2.3 33 52-84 64-96 (138)
243 PF12537 DUF3735: Protein of u 32.6 34 0.00073 22.2 1.7 42 50-92 16-58 (72)
244 PF06522 B12D: NADH-ubiquinone 32.5 20 0.00044 23.4 0.7 26 55-80 9-41 (73)
245 PF05569 Peptidase_M56: BlaR1 32.4 1.6E+02 0.0035 22.5 5.6 20 9-28 36-55 (299)
246 PF11772 EpuA: DNA-directed RN 32.4 34 0.00073 21.5 1.6 20 54-73 2-21 (47)
247 COG1862 YajC Preprotein transl 32.4 1E+02 0.0023 21.7 4.3 29 67-95 19-48 (97)
248 PF07695 7TMR-DISM_7TM: 7TM di 32.2 56 0.0012 22.1 2.8 21 63-83 133-153 (205)
249 PF11346 DUF3149: Protein of u 32.0 51 0.0011 20.4 2.3 21 60-80 18-38 (42)
250 PF12046 DUF3529: Protein of u 31.9 28 0.00061 27.1 1.4 24 70-95 122-145 (173)
251 PRK00269 zipA cell division pr 31.9 49 0.0011 27.7 2.9 29 51-83 4-32 (293)
252 PLN03098 LPA1 LOW PSII ACCUMUL 31.7 57 0.0012 28.7 3.4 17 73-89 256-272 (453)
253 PRK11086 sensory histidine kin 31.7 77 0.0017 24.8 3.8 28 52-79 18-45 (542)
254 PF00122 E1-E2_ATPase: E1-E2 A 31.6 1E+02 0.0022 22.0 4.2 23 71-93 11-33 (230)
255 PRK10574 putative major pilin 31.4 1.3E+02 0.0029 22.1 4.8 16 68-83 26-41 (146)
256 PF12768 Rax2: Cortical protei 31.3 26 0.00055 28.2 1.1 29 50-78 226-257 (281)
257 TIGR01655 yxeA_fam conserved h 30.9 35 0.00076 23.9 1.7 20 53-72 3-22 (114)
258 PLN03155 cytochrome c oxidase 30.5 1.1E+02 0.0024 20.8 3.9 43 41-84 6-48 (63)
259 PF12191 stn_TNFRSF12A: Tumour 30.2 22 0.00047 26.9 0.6 31 54-84 78-110 (129)
260 PF04391 DUF533: Protein of un 30.1 68 0.0015 24.7 3.2 22 59-80 33-54 (188)
261 PF02158 Neuregulin: Neureguli 30.1 17 0.00037 31.8 0.0 34 53-87 11-45 (404)
262 cd01324 cbb3_Oxidase_CcoQ Cyto 30.1 66 0.0014 19.8 2.6 23 64-86 21-44 (48)
263 PF06160 EzrA: Septation ring 29.8 1.4E+02 0.003 25.9 5.4 39 55-93 2-40 (560)
264 COG2841 Uncharacterized protei 29.5 29 0.00062 24.1 1.0 18 83-100 15-32 (72)
265 KOG0860 Synaptobrevin/VAMP-lik 29.4 61 0.0013 24.0 2.7 17 55-71 94-110 (116)
266 PRK13455 F0F1 ATP synthase sub 29.4 2.1E+02 0.0045 20.8 5.6 33 64-96 36-72 (184)
267 PF03729 DUF308: Short repeat 29.2 97 0.0021 18.1 3.2 26 54-79 23-48 (72)
268 PF03419 Peptidase_U4: Sporula 29.0 42 0.00091 26.2 2.0 27 55-81 127-153 (293)
269 KOG1025 Epidermal growth facto 28.5 79 0.0017 31.2 4.0 39 53-91 629-671 (1177)
270 PRK14764 lipoprotein signal pe 28.5 1.6E+02 0.0035 23.2 5.1 34 46-79 30-63 (209)
271 PF09972 DUF2207: Predicted me 28.4 42 0.00091 26.4 1.9 22 63-84 237-258 (511)
272 PRK11380 hypothetical protein; 28.2 77 0.0017 27.4 3.5 23 61-83 80-102 (353)
273 PF04892 VanZ: VanZ like famil 28.2 57 0.0012 21.6 2.3 23 56-78 111-133 (133)
274 PF15392 Joubert: Joubert synd 28.2 59 0.0013 27.9 2.8 23 72-94 59-81 (329)
275 PF09682 Holin_LLH: Phage holi 28.1 1.6E+02 0.0034 20.2 4.5 18 73-90 29-47 (108)
276 PF05494 Tol_Tol_Ttg2: Toluene 27.8 28 0.0006 24.7 0.7 26 67-93 44-69 (170)
277 PF10267 Tmemb_cc2: Predicted 27.7 83 0.0018 27.1 3.6 22 11-32 345-366 (395)
278 PF08695 Coa1: Cytochrome oxid 27.7 38 0.00083 22.7 1.4 36 67-102 11-46 (116)
279 COG3763 Uncharacterized protei 27.7 89 0.0019 21.6 3.1 16 57-72 7-22 (71)
280 TIGR01386 cztS_silS_copS heavy 27.7 1.1E+02 0.0025 23.1 4.0 25 51-75 5-29 (457)
281 TIGR01947 rnfG electron transp 27.6 2E+02 0.0044 21.3 5.3 18 77-94 28-45 (186)
282 PF12263 DUF3611: Protein of u 27.4 2.8E+02 0.006 21.4 6.2 30 51-80 56-85 (183)
283 PF11660 DUF3262: Protein of u 27.2 29 0.00063 23.0 0.7 29 54-82 20-54 (76)
284 PF07436 Curto_V3: Curtovirus 27.0 52 0.0011 23.5 1.9 16 10-25 7-22 (87)
285 PRK00404 tatB sec-independent 26.9 79 0.0017 23.9 3.0 9 95-103 48-56 (141)
286 PF14012 DUF4229: Protein of u 26.9 1.6E+02 0.0036 19.1 4.2 32 54-85 33-64 (69)
287 TIGR03063 srtB_target sortase 26.8 73 0.0016 18.5 2.2 20 54-73 8-27 (29)
288 PF10746 Phage_holin_6: Phage 26.7 58 0.0013 22.2 2.1 14 68-81 53-66 (66)
289 COG3071 HemY Uncharacterized e 26.4 2.3E+02 0.0049 25.0 6.1 10 85-94 90-99 (400)
290 PF11353 DUF3153: Protein of u 26.4 97 0.0021 23.2 3.5 19 60-80 188-206 (209)
291 PTZ00441 sporozoite surface pr 26.2 46 0.001 30.1 1.9 29 47-75 507-535 (576)
292 PF12216 m04gp34like: Immune e 26.1 1.3E+02 0.0028 24.6 4.3 11 54-64 237-247 (272)
293 PRK10856 cytoskeletal protein 26.0 1.1E+02 0.0024 25.1 3.9 27 53-80 112-138 (331)
294 TIGR01478 STEVOR variant surfa 25.8 94 0.002 26.3 3.6 27 54-81 261-287 (295)
295 PF10812 DUF2561: Protein of u 25.8 1.1E+02 0.0024 24.8 3.8 32 46-78 56-89 (207)
296 PF10183 ESSS: ESSS subunit of 25.6 1.2E+02 0.0026 21.0 3.5 27 54-80 62-94 (105)
297 PF05767 Pox_A14: Poxvirus vir 25.5 1E+02 0.0023 22.2 3.3 34 54-87 47-84 (92)
298 PRK15053 dpiB sensor histidine 25.5 1.2E+02 0.0027 24.2 4.0 18 52-69 20-37 (545)
299 PF11118 DUF2627: Protein of u 25.4 30 0.00065 24.2 0.5 24 66-89 54-77 (77)
300 TIGR02596 Verrucomicrobium spi 25.3 1.4E+02 0.0031 23.3 4.3 18 68-85 20-37 (195)
301 PF03597 CcoS: Cytochrome oxid 25.3 91 0.002 19.2 2.6 28 54-81 2-29 (45)
302 PF10669 Phage_Gp23: Protein g 25.3 79 0.0017 23.7 2.7 26 54-79 17-42 (121)
303 PF03381 CDC50: LEM3 (ligand-e 25.3 49 0.0011 26.3 1.8 27 54-80 247-273 (278)
304 PF13904 DUF4207: Domain of un 25.2 84 0.0018 24.8 3.1 19 71-89 185-203 (264)
305 PF06809 NPDC1: Neural prolife 25.1 14 0.00029 31.8 -1.4 17 61-77 211-227 (341)
306 PF06923 GutM: Glucitol operon 25.1 2.5E+02 0.0054 19.7 5.2 31 58-88 4-34 (109)
307 PF07637 PSD5: Protein of unkn 24.9 40 0.00087 21.2 1.0 26 68-93 8-33 (64)
308 COG1704 LemA Uncharacterized c 24.7 1.2E+02 0.0026 24.0 3.8 28 55-82 5-32 (185)
309 PRK11556 multidrug efflux syst 24.7 60 0.0013 26.6 2.2 25 54-78 8-32 (415)
310 PRK10249 phenylalanine transpo 24.7 55 0.0012 26.6 2.0 14 65-78 445-458 (458)
311 TIGR03593 yidC_nterm membrane 24.6 79 0.0017 25.1 2.8 18 63-80 9-26 (366)
312 PF01972 SDH_sah: Serine dehyd 24.5 1.9E+02 0.0041 24.3 5.1 36 58-93 9-45 (285)
313 TIGR01432 QOXA cytochrome aa3 24.5 68 0.0015 24.3 2.3 18 62-79 36-53 (217)
314 COG4477 EzrA Negative regulato 24.4 1.3E+02 0.0029 27.5 4.5 33 55-91 2-34 (570)
315 PF14163 SieB: Superinfection 24.4 1.8E+02 0.004 20.5 4.4 29 72-100 56-85 (151)
316 PRK11677 hypothetical protein; 24.1 1.5E+02 0.0033 21.9 4.1 12 58-69 11-22 (134)
317 PF05961 Chordopox_A13L: Chord 24.1 80 0.0017 21.7 2.4 19 62-80 10-28 (68)
318 PF02699 YajC: Preprotein tran 24.0 2.1E+02 0.0046 18.9 4.4 21 67-87 10-30 (82)
319 PRK14472 F0F1 ATP synthase sub 23.8 2.9E+02 0.0062 20.0 5.6 7 84-90 51-57 (175)
320 PRK08388 putative monovalent c 23.8 1.3E+02 0.0027 21.4 3.5 21 60-80 88-108 (119)
321 PTZ00370 STEVOR; Provisional 23.6 1.1E+02 0.0024 25.9 3.6 25 55-80 258-282 (296)
322 COG0586 DedA Uncharacterized m 23.5 1.1E+02 0.0024 23.0 3.3 22 59-80 184-205 (208)
323 PF12279 DUF3619: Protein of u 23.5 2E+02 0.0044 21.0 4.6 19 67-85 85-103 (131)
324 PRK15347 two component system 23.5 1.2E+02 0.0026 25.9 3.8 30 51-80 10-39 (921)
325 COG4714 Uncharacterized membra 23.3 75 0.0016 26.9 2.6 19 62-80 284-302 (303)
326 cd00925 Cyt_c_Oxidase_VIa Cyto 23.3 1E+02 0.0022 21.4 2.9 26 53-78 17-42 (86)
327 COG1288 Predicted membrane pro 23.3 1.1E+02 0.0023 27.6 3.6 42 63-104 226-274 (481)
328 COG1298 FlhA Flagellar biosynt 23.3 73 0.0016 29.8 2.7 10 94-103 359-368 (696)
329 PF07694 5TM-5TMR_LYT: 5TMR of 23.2 1.8E+02 0.004 20.0 4.1 23 63-85 91-115 (169)
330 PF14142 YrzO: YrzO-like prote 23.1 2.2E+02 0.0047 18.3 4.5 17 77-93 24-40 (46)
331 PF11884 DUF3404: Domain of un 23.1 1.5E+02 0.0032 24.5 4.2 9 74-82 253-261 (262)
332 PF10510 PIG-S: Phosphatidylin 23.1 67 0.0015 27.4 2.3 20 62-81 498-517 (517)
333 PRK12661 putative monovalent c 23.0 1.2E+02 0.0025 22.7 3.3 23 57-79 106-128 (140)
334 PHA03295 envelope glycoprotein 23.0 81 0.0018 29.2 2.9 25 51-75 687-711 (714)
335 PRK01908 electron transport co 23.0 2.3E+02 0.0049 21.7 5.0 17 78-94 33-49 (205)
336 PRK11404 putative PTS system 22.9 94 0.002 26.9 3.2 11 70-80 461-471 (482)
337 COG2149 Predicted membrane pro 22.8 99 0.0021 23.2 2.9 14 71-84 74-87 (120)
338 PRK12704 phosphodiesterase; Pr 22.8 1.7E+02 0.0037 25.5 4.7 19 56-74 6-24 (520)
339 PF01372 Melittin: Melittin; 22.8 1.7E+02 0.0036 16.9 3.2 10 73-82 17-26 (26)
340 PF12725 DUF3810: Protein of u 22.8 2E+02 0.0044 23.3 4.9 13 67-79 37-49 (318)
341 PF06570 DUF1129: Protein of u 22.8 1.2E+02 0.0026 22.6 3.3 13 66-78 188-200 (206)
342 PF09574 DUF2374: Protein of 22.7 68 0.0015 20.3 1.7 19 55-73 19-37 (42)
343 COG4658 RnfD Predicted NADH:ub 22.7 81 0.0018 27.2 2.7 40 21-71 258-305 (338)
344 COG2857 CYT1 Cytochrome c1 [En 22.7 77 0.0017 25.0 2.4 18 42-59 215-232 (250)
345 KOG4007 Uncharacterized conser 22.7 1.6E+02 0.0035 24.3 4.2 19 46-64 127-146 (229)
346 PRK11195 lysophospholipid tran 22.6 78 0.0017 24.5 2.4 18 67-84 371-388 (393)
347 PF14991 MLANA: Protein melan- 22.6 18 0.00039 27.0 -1.1 28 40-67 17-44 (118)
348 PRK10580 proY putative proline 22.4 50 0.0011 26.6 1.3 17 65-81 436-452 (457)
349 PLN02351 cytochromes b561 fami 22.4 3.2E+02 0.007 22.3 5.9 53 14-76 25-77 (242)
350 PF14256 YwiC: YwiC-like prote 22.2 1.1E+02 0.0025 21.8 3.0 14 67-80 94-107 (129)
351 PF06120 Phage_HK97_TLTM: Tail 22.2 1.6E+02 0.0035 24.5 4.3 24 63-86 28-51 (301)
352 cd02434 Nodulin-21_like_3 Nodu 22.2 2.6E+02 0.0056 21.6 5.1 6 98-103 120-125 (225)
353 PF07297 DPM2: Dolichol phosph 22.2 90 0.0019 21.5 2.4 23 58-80 54-76 (78)
354 KOG1219 Uncharacterized conser 22.2 56 0.0012 35.7 1.9 39 48-86 3988-4026(4289)
355 PHA03265 envelope glycoprotein 22.2 1.7E+02 0.0036 25.9 4.5 56 37-92 337-394 (402)
356 PTZ00045 apical membrane antig 22.0 89 0.0019 28.7 2.9 38 53-90 514-554 (595)
357 PF11457 DUF3021: Protein of u 21.8 2E+02 0.0044 19.4 4.1 20 64-83 112-131 (136)
358 PF10754 DUF2569: Protein of u 21.7 1.2E+02 0.0026 21.7 3.0 16 66-81 69-84 (149)
359 PLN00411 nodulin MtN21 family 21.6 1E+02 0.0022 25.1 3.0 29 65-97 319-347 (358)
360 PF10265 DUF2217: Uncharacteri 21.5 97 0.0021 27.8 3.0 21 47-67 9-29 (514)
361 PRK12658 putative monovalent c 21.3 1.4E+02 0.0029 21.9 3.3 25 57-81 81-105 (125)
362 PF04277 OAD_gamma: Oxaloaceta 21.3 1.1E+02 0.0025 19.1 2.6 6 70-75 27-32 (79)
363 PRK10478 putative PTS system f 21.2 55 0.0012 27.7 1.4 18 60-77 319-336 (359)
364 PRK05759 F0F1 ATP synthase sub 21.2 2.9E+02 0.0063 19.1 5.4 17 59-75 9-25 (156)
365 PF04973 NMN_transporter: Nico 21.1 76 0.0016 23.0 1.9 17 67-83 58-74 (181)
366 PRK06568 F0F1 ATP synthase sub 21.1 1.4E+02 0.0029 22.4 3.3 18 60-77 10-28 (154)
367 PRK00269 zipA cell division pr 21.0 82 0.0018 26.5 2.3 13 54-66 10-22 (293)
368 PF10066 DUF2304: Uncharacteri 20.9 1.9E+02 0.0041 19.9 3.8 26 61-86 9-34 (115)
369 PF04479 RTA1: RTA1 like prote 20.9 2E+02 0.0043 21.9 4.2 34 14-61 79-113 (226)
370 COG4420 Predicted membrane pro 20.9 4.4E+02 0.0096 21.1 7.2 25 60-86 97-121 (191)
371 PRK13453 F0F1 ATP synthase sub 20.7 3.4E+02 0.0073 19.7 5.3 12 82-93 49-60 (173)
372 PF06103 DUF948: Bacterial pro 20.7 2.5E+02 0.0053 18.1 4.9 24 68-91 15-38 (90)
373 CHL00008 petG cytochrome b6/f 20.7 1.4E+02 0.0031 18.4 2.8 21 57-77 9-29 (37)
374 PRK12705 hypothetical protein; 20.7 2E+02 0.0042 25.5 4.7 12 68-79 22-33 (508)
375 PF08375 Rpn3_C: Proteasome re 20.6 85 0.0018 20.9 2.0 19 77-95 47-65 (68)
376 PF06809 NPDC1: Neural prolife 20.6 39 0.00084 29.1 0.4 34 50-83 196-229 (341)
377 cd02437 CCC1_like_1 CCC1-relat 20.3 2.3E+02 0.005 20.7 4.3 22 82-103 68-89 (175)
378 PF03908 Sec20: Sec20; InterP 20.3 1.4E+02 0.003 19.7 2.9 20 56-77 72-91 (92)
379 KOG1052 Glutamate-gated kainat 20.2 1.6E+02 0.0034 25.1 3.9 27 55-81 597-623 (656)
380 TIGR00247 conserved hypothetic 20.2 91 0.002 25.3 2.4 8 66-73 18-25 (342)
381 PRK13855 type IV secretion sys 20.1 60 0.0013 28.1 1.4 33 47-81 25-57 (376)
No 1
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=97.81 E-value=4.2e-05 Score=48.41 Aligned_cols=35 Identities=34% Similarity=0.759 Sum_probs=30.5
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~ 84 (105)
.|-..+++++|++++++.+.++|+.||.+||--|+
T Consensus 8 ~GVIlVF~lVglv~i~iva~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 8 GGVILVFCLVGLVGIGIVALFIYRKWQARKRALQR 42 (43)
T ss_pred CCeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677888889999999999999999999997663
No 2
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=96.52 E-value=0.0022 Score=48.68 Aligned_cols=30 Identities=23% Similarity=0.580 Sum_probs=18.4
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
+..++|+.|+-++++ ++|+++.||-|||++
T Consensus 95 ~R~~~Vl~g~s~l~i-~yfvir~~R~r~~~r 124 (163)
T PF06679_consen 95 KRALYVLVGLSALAI-LYFVIRTFRLRRRNR 124 (163)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHhhccccc
Confidence 445555556555554 455778887776544
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=94.60 E-value=0.049 Score=39.70 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=19.2
Q ss_pred cCCCCceeehhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccch
Q 034055 47 RGNTGAKVGIVLLGLVAVGLF--SFFLFKLWQKKKREEQYARLLKLFEEDD 95 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~--~~~~yK~WqkkKRe~q~AR~lKLFEedD 95 (105)
.+-.+..++.|++|++|-+++ ++..|-.+|++||..-...- +.++||
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p--~P~~~d 107 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP--LPEEDD 107 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCC
Confidence 344455667777787765555 44466667666664322221 666633
No 4
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.46 E-value=0.062 Score=36.92 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=24.4
Q ss_pred cCCCCceeehhHHHHHH-HHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVA-VGLFSFFLFKLWQK 77 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va-~~~~~~~~yK~Wqk 77 (105)
+=|-|..|+|++.|++. +.++.+++|-||||
T Consensus 9 GlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 9 GLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred CCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888888887764 45568999999996
No 5
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=94.21 E-value=0.15 Score=35.62 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKREEQYARLL 88 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKRe~q~AR~l 88 (105)
++.++.+++++++|.+||=+|-+++-++|.
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ka~~~~~kL~ 36 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKKAKKQNAKLQ 36 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445556788888777777654443
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=93.39 E-value=0.24 Score=30.42 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=23.5
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLL 88 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~l 88 (105)
+++++++++++++..+...++|+.|++-++..|=+
T Consensus 23 ~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l 57 (68)
T PF06305_consen 23 LILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKEL 57 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577788888888888887776655544433
No 7
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.14 Score=33.81 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcC
Q 034055 65 GLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVELG 102 (105)
Q Consensus 65 ~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ELG 102 (105)
...++..|-||.+||.+.|||+-. .|.++||.+|+.|
T Consensus 21 ~fiavi~~ayr~~~K~~~d~aa~~-~l~l~Dd~q~~~~ 57 (60)
T COG4736 21 FFIAVIYFAYRPGKKGEFDEAARG-ILPLNDDAQDAAG 57 (60)
T ss_pred HHHHHHHHHhcccchhhHHHHhcc-CCCCCcchhhhhc
Confidence 334556778899999999998753 3677888888875
No 8
>PF14981 FAM165: FAM165 family
Probab=91.69 E-value=0.42 Score=31.29 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=21.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLF-SFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 58 ~lg~va~~~~-~~~~yK~WqkkKRe~q~AR~ 87 (105)
++..=.+|++ +|.+.|.||+|+-|+++.+.
T Consensus 12 ILaaKtlilClaFAgvK~yQ~krlEak~~k~ 42 (51)
T PF14981_consen 12 ILAAKTLILCLAFAGVKMYQRKRLEAKLKKL 42 (51)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444445554 78889999999988877553
No 9
>PHA03265 envelope glycoprotein D; Provisional
Probab=91.51 E-value=0.19 Score=43.45 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=26.3
Q ss_pred cCCCCcee-ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKV-GIVLLGLVAVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 47 ~~~tg~~v-~ii~lg~va~~~~~~~~yK~WqkkKRe~q~A 85 (105)
++++|+.+ ++|-+|++.+++....+|-.|+|||.....+
T Consensus 343 s~~~~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k~~ 382 (402)
T PHA03265 343 SKSNSTFVGISVGLGIAGLVLVGVILYVCLRRKKELKKSA 382 (402)
T ss_pred CCCCCcccceEEccchhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 44444443 4455577777777788999999998765543
No 10
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.36 E-value=0.34 Score=38.66 Aligned_cols=30 Identities=33% Similarity=0.643 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHhhh
Q 034055 62 VAVGLFSFFLFKLWQKKKREE------QYARLLKLF 91 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKRe~------q~AR~lKLF 91 (105)
|.++++.+|+++|||.++-++ +++.+++.-
T Consensus 29 viLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~ 64 (207)
T COG2976 29 VILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAV 64 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778999999999986 445555544
No 11
>PF12669 P12: Virus attachment protein p12 family
Probab=90.12 E-value=0.41 Score=30.64 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 034055 70 FLFKLWQKKKR 80 (105)
Q Consensus 70 ~~yK~WqkkKR 80 (105)
..++.|+++|+
T Consensus 16 ~~r~~~k~~K~ 26 (58)
T PF12669_consen 16 AIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHhhc
Confidence 35899988776
No 12
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=89.79 E-value=0.4 Score=39.57 Aligned_cols=27 Identities=19% Similarity=0.125 Sum_probs=23.2
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
..|+|+++++.++++.++++||.-+||
T Consensus 191 lpvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 191 LPVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 677888888889999999999998776
No 13
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=89.58 E-value=0.1 Score=43.17 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKRe~q~A 85 (105)
+.++..++++.+++--||.||+|++.++
T Consensus 220 L~sl~SLVIGFvlG~l~WKkkq~~~~~~ 247 (273)
T PF02404_consen 220 LPSLFSLVIGFVLGALYWKKKQRSLTQE 247 (273)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3344333333333334999999976654
No 14
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=89.55 E-value=0.71 Score=32.18 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKRe~q~AR~ 87 (105)
+.+++...-++++|++|.|-++|-|-
T Consensus 30 liill~c~c~~~~~r~r~~~~~q~rq 55 (102)
T PF11669_consen 30 LIILLSCCCACRHRRRRRRLQQQQRQ 55 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34445677789999998887766553
No 15
>PF15345 TMEM51: Transmembrane protein 51
Probab=89.29 E-value=0.95 Score=36.72 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=33.8
Q ss_pred hhhhccccCCCC-CCcCCCcccccccccCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 21 LQFIPAISDDPS-STKKGKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 21 lqf~~gls~d~s-~sk~~~k~~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~A 85 (105)
.-++.|++.-.+ ++...++.++......+-.-.|.+|++|+++..+.+-..-+.=+||||.++.+
T Consensus 26 W~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 26 WNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred eeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345566654333 22233444443321222234577888888655555555566666666665444
No 16
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=89.24 E-value=0.56 Score=36.91 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=23.4
Q ss_pred CceeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLG-LVAVGLFSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 51 g~~v~ii~lg-~va~~~~~~~~yK~WqkkKRe~q~AR~ 87 (105)
+.-|.||+.| ++.++++..++|-.|||+-.-..+.|+
T Consensus 100 ~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl 137 (202)
T PF06365_consen 100 PTLIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRL 137 (202)
T ss_pred eEEEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhh
Confidence 3444455555 456666677789999988654444454
No 17
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=88.51 E-value=0.65 Score=30.92 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchh
Q 034055 71 LFKLWQKKKREEQYARLLKLFEEDDE 96 (105)
Q Consensus 71 ~yK~WqkkKRe~q~AR~lKLFEedDd 96 (105)
.+-++.+|||+++++.++.=..-+|+
T Consensus 17 f~~~rpqkk~~k~~~~m~~~Lk~Gd~ 42 (82)
T PF02699_consen 17 FLMIRPQKKQQKEHQEMLASLKPGDE 42 (82)
T ss_dssp HHTHHHHHHHHHHHTTGGG-------
T ss_pred hheecHHHHHHHHHHHHHHcCCCCCE
Confidence 33445566666677766665555554
No 18
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=88.39 E-value=0.39 Score=33.39 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034055 69 FFLFKLWQKKKREEQYARLLKL 90 (105)
Q Consensus 69 ~~~yK~WqkkKRe~q~AR~lKL 90 (105)
...|+.|+|-|||+.--|+++=
T Consensus 24 ~iv~ieYrk~~rqrkId~li~R 45 (81)
T PF00558_consen 24 TIVYIEYRKIKRQRKIDRLIER 45 (81)
T ss_dssp HHH------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3467778888888766666654
No 19
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=88.00 E-value=0.14 Score=31.65 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKK 79 (105)
Q Consensus 68 ~~~~yK~WqkkK 79 (105)
.+++|..|+|+|
T Consensus 29 ~~~l~~~~rR~k 40 (40)
T PF08693_consen 29 GAFLFFWYRRKK 40 (40)
T ss_pred HHHhheEEeccC
Confidence 345666666654
No 20
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=87.28 E-value=1.4 Score=33.41 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=30.8
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ 99 (105)
++..|.+..++..++..+|+|+-++......++++-|.+..++|.
T Consensus 16 vm~~Ll~~Si~s~aiiieR~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (211)
T TIGR02797 16 VMIGLALASVVTWTIWIAKSVELAGARRRLKRALKALGEARTLAE 60 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCHHH
Confidence 344455666666778889999887776666777787766555443
No 21
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=87.04 E-value=0.42 Score=35.75 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhc
Q 034055 56 IVLLGLVAVGLFSFFLFK--LWQKKKREEQYARLLKLFE 92 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK--~WqkkKRe~q~AR~lKLFE 92 (105)
.+.++++++.+++|++|| -|.+++|.+.+.+.-..++
T Consensus 286 ~~~~~~~G~~~~~f~LYK~g~~~~~~~~r~~~~~~~~~~ 324 (354)
T PF05795_consen 286 SPVLSVLGIPLIFFLLYKFGSWFNRRRGRRRRIINNNFN 324 (354)
T ss_pred hhhhhhHHHHHHHHHHhccchhhcccccccccccccccc
Confidence 455677788888999999 5766666655444333333
No 22
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=86.74 E-value=1.5 Score=34.60 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=32.6
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ 99 (105)
+++.+|.+..++..++...|+|+-++......++.+.|..-.++|.
T Consensus 25 ~Vm~~Ll~~Si~swaiIieR~~~l~~~~~~~~~~~~~~~~~~~l~~ 70 (244)
T PRK10414 25 CVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLDQ 70 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4455666667777788899999987776666788887766544443
No 23
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=84.91 E-value=1.7 Score=30.58 Aligned_cols=28 Identities=25% Similarity=0.384 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKRe~q~AR 86 (105)
+|+++.+++-+..|..|++.+|.+.|+|
T Consensus 127 ~~~v~~~i~Y~l~~~~~~~~r~~r~~~r 154 (154)
T PF09835_consen 127 LGIVLGIISYFLVYFLVRKYRKRRRKRR 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3555666666777888887777666665
No 24
>PTZ00270 variable surface protein Vir32; Provisional
Probab=84.19 E-value=0.63 Score=37.88 Aligned_cols=28 Identities=43% Similarity=0.485 Sum_probs=25.3
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~ 74 (105)
.+++..++.-|+|||||..+.++++||+
T Consensus 264 ~~~~~~~~g~~~lGvv~t~~tsgalYr~ 291 (333)
T PTZ00270 264 GTNPVTKSGNVLLGVVATSMTSGALYKF 291 (333)
T ss_pred CCCcchhccceehhhhhhhhhhhhheec
Confidence 4567899999999999999999999997
No 25
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=83.85 E-value=1.7 Score=35.66 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 65 GLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 65 ~~~~~~~yK~WqkkKRe~q~ 84 (105)
+++++.+|.|||..++|+++
T Consensus 176 ~~~~~~g~~~~~~~~~~~~~ 195 (414)
T PF06864_consen 176 ALAGGYGWWYWQAQQEEARR 195 (414)
T ss_pred HHHHHHHHHHhhhhhhHHHH
Confidence 34456788899877554443
No 26
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=83.81 E-value=1.6 Score=33.30 Aligned_cols=10 Identities=40% Similarity=0.571 Sum_probs=5.1
Q ss_pred ccchhhhhhc
Q 034055 92 EEDDELEVEL 101 (105)
Q Consensus 92 EedDdle~EL 101 (105)
+||||.++|+
T Consensus 82 ~~deD~~~~~ 91 (248)
T PF11368_consen 82 EEDEDENEEY 91 (248)
T ss_pred cccchHHHHH
Confidence 3455555543
No 27
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=83.24 E-value=3.5 Score=29.57 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhccchhhhhh
Q 034055 60 GLVAVGLFSFFLFKLWQK-----KKREEQYARLLKLFEEDDELEVE 100 (105)
Q Consensus 60 g~va~~~~~~~~yK~Wqk-----kKRe~q~AR~lKLFEedDdle~E 100 (105)
+++..+++++.+|-||+. +|+++++.++-.|=++-++++.+
T Consensus 82 ~fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 82 AFIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667778888874 35555666666665555555544
No 28
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=83.23 E-value=0.21 Score=36.83 Aligned_cols=29 Identities=14% Similarity=-0.171 Sum_probs=19.8
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
..+++||+++++.+++++.++|-+|.+++
T Consensus 23 kk~liii~~~~lll~~~g~g~~f~~~~~~ 51 (166)
T PRK12785 23 KKKLIIIAAAAVLLLGGGGGGFFFFFSHG 51 (166)
T ss_pred cceEeeHHHHHHHHHhcchheEEEEEecC
Confidence 45666666677777777777777776544
No 29
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=83.12 E-value=3.6 Score=29.19 Aligned_cols=15 Identities=20% Similarity=0.642 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 034055 64 VGLFSFFLFKLWQKK 78 (105)
Q Consensus 64 ~~~~~~~~yK~Wqkk 78 (105)
++++++..+++||+.
T Consensus 34 ~~~~~~~~~r~~~~~ 48 (146)
T PF14316_consen 34 LILLLWRLWRRWRRN 48 (146)
T ss_pred HHHHHHHHHHHHHcc
Confidence 333444455555553
No 30
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.03 E-value=3.1 Score=26.84 Aligned_cols=7 Identities=14% Similarity=0.937 Sum_probs=2.9
Q ss_pred hhHHHHH
Q 034055 56 IVLLGLV 62 (105)
Q Consensus 56 ii~lg~v 62 (105)
|+++|++
T Consensus 19 l~Iigil 25 (149)
T COG2165 19 LAIIGIL 25 (149)
T ss_pred HHHHHHH
Confidence 3344444
No 31
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=82.73 E-value=2.7 Score=32.54 Aligned_cols=40 Identities=5% Similarity=0.040 Sum_probs=30.1
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
+++.+|.+..++..++...|+|+-++...+..+|++-|.+
T Consensus 16 ~vm~~Ll~~Si~s~aIiieR~~~l~~~~~~~~~f~~~~~~ 55 (227)
T PRK10801 16 LIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWS 55 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3444555666777778899999998888888888887755
No 32
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=82.53 E-value=2.2 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=19.1
Q ss_pred CCCceeehhHHH-HHHHHHHHHHHHHHHHHHH
Q 034055 49 NTGAKVGIVLLG-LVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 49 ~tg~~v~ii~lg-~va~~~~~~~~yK~WqkkK 79 (105)
.+...++|..++ .+|+++++.++|-+.++||
T Consensus 51 k~kK~iiiS~i~s~lalli~~~~G~g~y~~~k 82 (84)
T PF09716_consen 51 KNKKKIIISTIASGLALLIATALGYGYYKKKK 82 (84)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666666664 4455666666777777665
No 33
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=82.31 E-value=0.28 Score=37.58 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=13.9
Q ss_pred eeehhHHHHH-H-HHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLV-A-VGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 53 ~v~ii~lg~v-a-~~~~~~~~yK~WqkkKR 80 (105)
.||=+++||+ + ++++++++|-+|.|+||
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 3444555653 2 33334445555555555
No 34
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.86 E-value=4.8 Score=28.01 Aligned_cols=13 Identities=23% Similarity=0.859 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLW 75 (105)
Q Consensus 63 a~~~~~~~~yK~W 75 (105)
.+++.+++.|.+|
T Consensus 8 ll~ll~~l~y~l~ 20 (105)
T PRK00888 8 LLALLVWLQYSLW 20 (105)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444555554
No 35
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=81.40 E-value=0.068 Score=41.82 Aligned_cols=28 Identities=32% Similarity=0.317 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~q 83 (105)
|+++++|+++++..+.|..-+|||.++.
T Consensus 163 ll~lllv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 163 LLLLLLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHHHHHhhcceEEEEEEeccccccc
Confidence 3333444445444444433344444433
No 36
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=81.30 E-value=3.1 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=11.1
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~W 75 (105)
.-+++.+++|++.++.+.+-.+|-|
T Consensus 45 ~G~~ll~~vg~gli~~gi~~~~~a~ 69 (73)
T PF06724_consen 45 FGRWLLGAVGLGLIGYGIWQFVKAV 69 (73)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 37
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=80.92 E-value=4.2 Score=28.83 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=28.0
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLF 91 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLF 91 (105)
++..--+++++.++++++++|..|++.||..-+..-|+.+
T Consensus 19 ~a~GWwll~~lll~~~~~~~~~~~r~~~~~~yrr~Al~~L 58 (146)
T PF14316_consen 19 LAPGWWLLLALLLLLLILLLWRLWRRWRRNRYRREALREL 58 (146)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3444556777888999999999999999974443344444
No 38
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=80.35 E-value=2.3 Score=29.20 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=11.1
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFL 71 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~ 71 (105)
+++++.+..+++++++++++.+++.
T Consensus 41 ~~~~~~~~~~~ii~ii~v~ii~~l~ 65 (72)
T PF12575_consen 41 KNNKNFNWIILIISIIFVLIIVLLT 65 (72)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 39
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.19 E-value=0.36 Score=41.19 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=25.1
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~ 87 (105)
.+..+.|+++++|.+++++++.|.+.|+ +||+++.||
T Consensus 314 g~~~~~ill~~vv~~v~~ai~s~~i~q~-r~er~Rkrf 350 (351)
T KOG3839|consen 314 GARLFLILLFVVVFLVGGAIFSIVIFQV-RQERNRKRF 350 (351)
T ss_pred cchhHHHHHHHHHHHHHhhheEEEEEee-hhhhhhccc
Confidence 4466666677888888888888777664 345555565
No 40
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=80.12 E-value=3.1 Score=32.58 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccch
Q 034055 69 FFLFKLWQKKKREEQYARLLKLFEEDD 95 (105)
Q Consensus 69 ~~~yK~WqkkKRe~q~AR~lKLFEedD 95 (105)
.++..+|+-++.++++..+-++.++++
T Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (232)
T TIGR03064 20 KLGQIFYDYYTNRQVLAEAQQVYKKSM 46 (232)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccc
Confidence 344556888888888888877776653
No 41
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=79.61 E-value=7.2 Score=23.50 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKREEQYARLL 88 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKRe~q~AR~l 88 (105)
.|+.+++++..++...|++|+..++.++..
T Consensus 12 Yg~t~l~l~~li~~~~~~~r~~~~~l~~~~ 41 (45)
T TIGR03141 12 YGITALVLAGLILWSLLDRRRLLRELRRLE 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777888888888777766654
No 42
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=79.09 E-value=2 Score=27.50 Aligned_cols=14 Identities=14% Similarity=0.949 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKKRE 81 (105)
Q Consensus 68 ~~~~yK~WqkkKRe 81 (105)
+...|-+|+|+|++
T Consensus 33 ~lt~yal~r~~~~~ 46 (46)
T PF11431_consen 33 GLTIYALWRRRRKQ 46 (46)
T ss_dssp HHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhccC
Confidence 45589999998864
No 43
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=78.59 E-value=3.5 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchh
Q 034055 74 LWQKKKREEQYARLLKLFEEDDE 96 (105)
Q Consensus 74 ~WqkkKRe~q~AR~lKLFEedDd 96 (105)
+=..|||+++|+.++.=..-+|+
T Consensus 20 iRPQkKr~Ke~~em~~sLk~GD~ 42 (113)
T PRK06531 20 QRQQKKQAQERQNQLNAIQKGDE 42 (113)
T ss_pred echHHHHHHHHHHHHHhcCCCCE
Confidence 33567777888888887777765
No 44
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=78.57 E-value=2.9 Score=28.80 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=13.7
Q ss_pred CCCceeehhHHHHHHHHHHHHHHH
Q 034055 49 NTGAKVGIVLLGLVAVGLFSFFLF 72 (105)
Q Consensus 49 ~tg~~v~ii~lg~va~~~~~~~~y 72 (105)
+.+..++|++++++++++...+.|
T Consensus 59 ~~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhhhe
Confidence 344556666666666665555554
No 45
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=78.16 E-value=12 Score=30.62 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034055 72 FKLWQKKKREEQYAR 86 (105)
Q Consensus 72 yK~WqkkKRe~q~AR 86 (105)
|-||+.+.-.+.+++
T Consensus 47 ~~~~~~~q~~~~~~~ 61 (372)
T PF04375_consen 47 GWYWQQQQLQQLQQQ 61 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344544443333333
No 46
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=78.00 E-value=1.7 Score=31.94 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=16.5
Q ss_pred CceeehhHH-HHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLL-GLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 51 g~~v~ii~l-g~va~~~~~~~~yK~WqkkKR 80 (105)
|...+.|.| .++.++++++.++-+|.||+|
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeeccce
Confidence 444555555 444445555556666766665
No 47
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=77.79 E-value=6.4 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
+..++.+.+++++.+.||.||-+++
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555566779999999988
No 48
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=77.23 E-value=5.3 Score=31.55 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=32.3
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELE 98 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle 98 (105)
..++++++++++++.++--||--+|-|++..+.+.-.++...++
T Consensus 4 ~~~~~~~v~~l~~~~~g~~~~~G~~~e~~~~~~~~~~n~~~~~~ 47 (460)
T PF06097_consen 4 STIALGVVVALVAAWLGAPWYTGKQAEQQYQQQVAQLNQQPGVK 47 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceE
Confidence 45566667777777778888999999999888887777544433
No 49
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=77.04 E-value=5 Score=29.16 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=16.2
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
..+++|+++.++.++++++++|-||-++
T Consensus 15 kkkl~ii~l~~l~l~~~g~gg~~~~~~~ 42 (162)
T PRK07021 15 KRKLWLIILILLLLAAAAGAGYSWWLSK 42 (162)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555555555555556666666654
No 50
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=76.15 E-value=6.5 Score=28.26 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhccchh
Q 034055 76 QKKKREEQYARLLKLFEEDDE 96 (105)
Q Consensus 76 qkkKRe~q~AR~lKLFEedDd 96 (105)
..|||+++|+.++.=..-+|+
T Consensus 24 PQkKr~K~~~~m~~~Lk~GD~ 44 (109)
T PRK05886 24 RQRKAMQATIDLHESLQPGDR 44 (109)
T ss_pred HHHHHHHHHHHHHHhcCCCCE
Confidence 345566677777776666654
No 51
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=75.86 E-value=3.8 Score=24.62 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034055 64 VGLFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 64 ~~~~~~~~yK~WqkkKRe~q~AR 86 (105)
++..+.+.|-||.|+|+.-+.|.
T Consensus 20 ~~F~gi~~w~~~~~~k~~~e~aa 42 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRNKKRFEEAA 42 (49)
T ss_pred HHHHHHHHHHHcccchhhHHHHH
Confidence 33345557778877555544444
No 52
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=75.84 E-value=5.7 Score=26.80 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhccchh
Q 034055 76 QKKKREEQYARLLKLFEEDDE 96 (105)
Q Consensus 76 qkkKRe~q~AR~lKLFEedDd 96 (105)
..|||+++++.++.=...+|+
T Consensus 23 pqkK~~k~~~~m~~~L~~Gd~ 43 (84)
T TIGR00739 23 PQRKRRKAHKKLIESLKKGDK 43 (84)
T ss_pred hHHHHHHHHHHHHHhCCCCCE
Confidence 345566666777776666664
No 53
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=75.11 E-value=7 Score=25.70 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=21.8
Q ss_pred eeehhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLW------QKKKREEQYARLLK 89 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~W------qkkKRe~q~AR~lK 89 (105)
+++++++++++++ +++++.+| ||.+-+++--+.|.
T Consensus 5 kii~iii~li~i~--li~~~~~~~~~~~~~k~~~~k~i~~yL~ 45 (85)
T PF11337_consen 5 KIILIIIILIVIS--LIIGIYYFFNGNPYQKHKAEKAIDWYLQ 45 (85)
T ss_pred HHHHHHHHHHHHH--HHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 3555555554433 56677778 77777777666664
No 54
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=74.48 E-value=10 Score=25.51 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ 99 (105)
+++..++.+++.++||+---..|.+.+|-|.|=++-.+|.|.
T Consensus 21 i~~a~~ls~~~~~~~kf~v~~pRKk~YadFYknYD~~k~fe~ 62 (73)
T PF02937_consen 21 IVVAFVLSLGVAAAYKFGVAEPRKKAYADFYKNYDPMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccChHHHHHH
Confidence 334445555566677766666778889999999988888774
No 55
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=74.14 E-value=0.61 Score=39.24 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=22.8
Q ss_pred ccCCCCceeehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 46 SRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 46 s~~~tg~~v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
|.+....++++++-+++.+++..||.||+-.+|
T Consensus 272 S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~~ 304 (305)
T PF04639_consen 272 SVSDSLLPIILIIGGVLLIVFIGYFIFKRLMNR 304 (305)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhheeeEeeccC
Confidence 455566676666667777777788888876554
No 56
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=73.67 E-value=7.7 Score=29.53 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=23.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEED 94 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEed 94 (105)
++..|.+..++..++.++|+|.-++......+|++-+.+.
T Consensus 16 vm~~Ll~~Sii~~aviieR~~~~~~~~~~~~~~~~~~~~~ 55 (215)
T TIGR02796 16 VMLILLLASIISWAIIFQKFFIFRRARREAEEFEDRFWSG 55 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHcC
Confidence 3444555555666677888777655544455566655443
No 57
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=72.70 E-value=8.4 Score=32.14 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccch
Q 034055 57 VLLGLVAVGLFSFFLFKLWQ-KKKREEQYARLLKLFEEDD 95 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~Wq-kkKRe~q~AR~lKLFEedD 95 (105)
+++..++.+++....|-+|| |.||+..+.|-++.-+++-
T Consensus 5 ~~~~~~~~~~~~~~a~~~~~~~~~r~~~~~~~i~~~~~~~ 44 (309)
T COG4965 5 YLVLAALSALLLAYAFLGWRSKSKRARIRNRRIKAAATDL 44 (309)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444555566888999 8889888888888777653
No 58
>PLN03150 hypothetical protein; Provisional
Probab=72.18 E-value=3.6 Score=35.46 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=19.4
Q ss_pred CCCceeehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 49 NTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 49 ~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
..+.++.+++.+++++++..+.++-+|+|||+
T Consensus 542 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~~ 573 (623)
T PLN03150 542 SVGAKIGIAFGVSVAFLFLVICAMCWWKRRQN 573 (623)
T ss_pred CCceEEEEEhHHHHHHHHHHHHHhhheeehhh
Confidence 35556665555555555556666777776654
No 59
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=72.17 E-value=0.53 Score=36.61 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~q~ 84 (105)
.+++++++++++.+++.++|+++++|+++
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
T PF09402_consen 220 LIILGVLILLLLIKYIRYRYRKRREEKAR 248 (334)
T ss_dssp --------------------STHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666555543
No 60
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=72.13 E-value=15 Score=22.12 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~ 87 (105)
....|+.+++++..++...|++|+-..+-+|.
T Consensus 8 W~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888888888888877766555543
No 61
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=71.87 E-value=1.8 Score=31.06 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=22.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~ 84 (105)
++|++++++++++++.++|.++.++..|.++
T Consensus 6 ~~i~~i~l~~l~~~g~~~~~~~~~~~~~~~~ 36 (142)
T PRK07718 6 IKIMLIILIVIALIGTAALVLVMGFSEAKKQ 36 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcccc
Confidence 4455567778888888899999887766654
No 62
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=71.34 E-value=5.2 Score=32.12 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 59 lg~va~~~~~~~~yK~Wqk 77 (105)
.+++.|+++.+++.|++-|
T Consensus 73 ~aL~~VI~Liy~l~rwL~r 91 (219)
T PRK13415 73 GATLFVIFLIYALVKWLNK 91 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444
No 63
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=71.26 E-value=6.6 Score=32.86 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhhhccchhh
Q 034055 63 AVGLFSFFLFKLWQKKKREE---QYARLLKLFEEDDEL 97 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~---q~AR~lKLFEedDdl 97 (105)
..++...+...||||-|+.. +.....+.++++++.
T Consensus 207 ~~~i~~~~~~~ya~kv~~~p~~~~~~~~~~~~~~~~~~ 244 (465)
T PF03606_consen 207 FTLIAIAYVHRYAQKVKKDPSYSEVYEDDEAEEEEEEE 244 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhHHhhhhcccc
Confidence 34445556778999877765 334445555554444
No 64
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=71.22 E-value=9.9 Score=31.40 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=13.3
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLF--SFFLFKLWQKKKREEQY 84 (105)
Q Consensus 58 ~lg~va~~~~--~~~~yK~WqkkKRe~q~ 84 (105)
.+|++++++. +++..--|.||||-|+-
T Consensus 220 ~~G~~~L~ll~~lv~~~vr~krk~k~~eM 248 (278)
T PF06697_consen 220 VGGVVLLGLLSLLVAMLVRYKRKKKIEEM 248 (278)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4566655554 33344445555554443
No 65
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=70.60 E-value=10 Score=28.50 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
++++++++.+++++++.+...+++.
T Consensus 5 ~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333333444444433333
No 66
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=70.50 E-value=1.4 Score=37.48 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCceeehhHHHH
Q 034055 50 TGAKVGIVLLGL 61 (105)
Q Consensus 50 tg~~v~ii~lg~ 61 (105)
.+..++.+++|+
T Consensus 350 ~~~~~l~vVlgv 361 (439)
T PF02480_consen 350 RGAALLGVVLGV 361 (439)
T ss_dssp ------------
T ss_pred cccchHHHHHHH
Confidence 334444444443
No 67
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=70.27 E-value=4.4 Score=30.11 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=21.6
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHH--HHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQ--KKKRE 81 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~Wq--kkKRe 81 (105)
.+.-.+..++=+=++.+++|++|++.+ +||++
T Consensus 77 ~~~g~~~~imPlYtiGI~~f~lY~l~Ki~~~k~~ 110 (152)
T PF15361_consen 77 SGKGLMGQIMPLYTIGIVLFILYTLFKIKKKKDS 110 (152)
T ss_pred CCCchhhhHhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 355566666666777777888888776 55554
No 68
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=70.19 E-value=4.6 Score=21.98 Aligned_cols=10 Identities=30% Similarity=0.112 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 034055 70 FLFKLWQKKK 79 (105)
Q Consensus 70 ~~yK~WqkkK 79 (105)
.++-+++|||
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 4444555554
No 69
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=69.62 E-value=6.2 Score=29.26 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKRe 81 (105)
++|+|.. +.+.+.+|+|+|+|.
T Consensus 12 ~aLaAAG-~G~AA~~~~krk~kK 33 (137)
T PF12868_consen 12 AALAAAG-AGYAAHKYKKRKEKK 33 (137)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhh
Confidence 4444444 556688999877544
No 70
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=69.59 E-value=5.2 Score=32.86 Aligned_cols=36 Identities=17% Similarity=0.476 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhcc
Q 034055 58 LLGLVAVGLFSFFLFKLWQ--KKKREEQYARLLKLFEE 93 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~Wq--kkKRe~q~AR~lKLFEe 93 (105)
++++|.+++..+..|-.|| |||+-.....-.||.+|
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmkKKlQYiKLL~e 299 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLKE 299 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 3344444444455555543 33333334444555543
No 71
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=69.56 E-value=12 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.370 Sum_probs=20.9
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~W 75 (105)
....-.++++++++++...+++|=..
T Consensus 57 ~~~~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 57 KQNNGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred ccccccchHHHHHHHHHHHHHHhhhe
Confidence 45667888899999999999888543
No 72
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=69.42 E-value=12 Score=26.36 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhccchh
Q 034055 77 KKKREEQYARLLKLFEEDDE 96 (105)
Q Consensus 77 kkKRe~q~AR~lKLFEedDd 96 (105)
.|||+++++.+++=..-+|+
T Consensus 39 qkK~~k~~~~~~~~Lk~Gd~ 58 (106)
T PRK05585 39 QQKRQKEHKKMLSSLAKGDE 58 (106)
T ss_pred HHHHHHHHHHHHHhcCCCCE
Confidence 55555666777766665554
No 73
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=69.30 E-value=8 Score=30.11 Aligned_cols=14 Identities=36% Similarity=0.626 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQ 76 (105)
Q Consensus 63 a~~~~~~~~yK~Wq 76 (105)
.|...+||+|||++
T Consensus 172 Gv~aI~ff~~KF~k 185 (186)
T PF05283_consen 172 GVLAIIFFLYKFCK 185 (186)
T ss_pred HHHHHHHHHhhhcc
Confidence 33445678999985
No 74
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=68.56 E-value=4.5 Score=30.57 Aligned_cols=13 Identities=0% Similarity=0.036 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLF 72 (105)
Q Consensus 60 g~va~~~~~~~~y 72 (105)
.++.++++.+++|
T Consensus 27 ~llll~~~G~~~~ 39 (182)
T PRK08455 27 VVLLLLIVGVIAM 39 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444455555
No 75
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=68.35 E-value=4 Score=31.93 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~ 82 (105)
.+.++....+++|.||+.||
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 425 ILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHHHhccccchHHH
Confidence 33344555678888887776
No 76
>PF11780 DUF3318: Protein of unknown function (DUF3318); InterPro: IPR021751 This is a bacterial family of uncharacterised proteins.
Probab=67.89 E-value=5.1 Score=29.78 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKR 80 (105)
+..++.+.+|+.||+.|.
T Consensus 109 a~Gla~~~~~riwq~~~~ 126 (146)
T PF11780_consen 109 AGGLAAWAAYRIWQQNRS 126 (146)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 667777889999999986
No 77
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=66.95 E-value=21 Score=24.23 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ 99 (105)
+.+..++.+++-++||+---..|.+.+|.|-|=+.-.+|-|.
T Consensus 19 l~~a~~lsl~~~~~~k~~~~~pRK~aYadFYknYD~~kdFer 60 (70)
T cd00927 19 LIVAFVLSLGAAAAYKFLVNEPRKKAYADFYKTYDAMKDFER 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccChHHHHHH
Confidence 344445555556677776666677789999999988887774
No 78
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=66.93 E-value=2.6 Score=30.57 Aligned_cols=6 Identities=17% Similarity=-0.319 Sum_probs=2.6
Q ss_pred HHHHHH
Q 034055 73 KLWQKK 78 (105)
Q Consensus 73 K~Wqkk 78 (105)
|--+.|
T Consensus 102 ~c~~~K 107 (179)
T PF13908_consen 102 CCCLYK 107 (179)
T ss_pred cccccc
Confidence 444444
No 79
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.73 E-value=6.8 Score=33.05 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=20.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
.||.++|.++.+.++.++++|++++--.
T Consensus 3 ~~v~vlVaa~llV~~i~l~l~~r~raA~ 30 (299)
T KOG3054|consen 3 EIVAVLVAAALLVAVILLFLWKRRRAAR 30 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3566677777777888999998887433
No 80
>PF13498 DUF4122: Domain of unknown function (DUF4122)
Probab=66.37 E-value=9.8 Score=30.95 Aligned_cols=23 Identities=35% Similarity=0.827 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034055 65 GLFSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 65 ~~~~~~~yK~WqkkKRe~q~AR~ 87 (105)
+..+..+||.|+.|||-+..--+
T Consensus 11 ~c~~yllykvw~~k~ri~~icdl 33 (220)
T PF13498_consen 11 GCAAYLLYKVWKQKKRIKEICDL 33 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999877765554433
No 81
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=65.86 E-value=32 Score=26.00 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=22.1
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
++..+-.|+=|+.++.+.++++.-+-||..|.
T Consensus 82 ~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 82 VDFALPLVIGGLCALTLAAMGAGALLRRCCRR 113 (126)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34334444447778888888888888877665
No 82
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=65.36 E-value=8.8 Score=28.98 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHh
Q 034055 75 WQKKKREEQYARLLK 89 (105)
Q Consensus 75 WqkkKRe~q~AR~lK 89 (105)
||+|-|+.=|||.|.
T Consensus 87 W~eK~K~~~qa~~~e 101 (129)
T PF02060_consen 87 WQEKDKAYFQARVLE 101 (129)
T ss_dssp --S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 555545555555443
No 83
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=65.08 E-value=24 Score=24.48 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=33.0
Q ss_pred HHhhhhhccccCCCCCCcCC-CcccccccccCCCC---ceeehhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 034055 18 SICLQFIPAISDDPSSTKKG-KQSAAHHTSRGNTG---AKVGIVLLGLVAVGLF---SFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 18 si~lqf~~gls~d~s~sk~~-~k~~~h~~s~~~tg---~~v~ii~lg~va~~~~---~~~~yK~WqkkKRe~q~AR~ 87 (105)
.+.+-++|==+.||+-+... +..+.|. --|..| ..+++-++|..|.++. .+..++++++|+++....|+
T Consensus 18 fl~~al~sy~~~D~~~~~~~~~~~~~~N-~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~ 93 (171)
T PF13491_consen 18 FLLLALISYSPSDPSWNSSGSTDAEVHN-LMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRW 93 (171)
T ss_pred HHHHHHHHcCCCCCcccccccccCCCcC-CCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHH
Confidence 33333555557777632111 1122222 233334 2345556666654443 44456777777655544444
No 84
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=64.95 E-value=7.9 Score=26.94 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 60 GLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
.+||+++..++-...|..=|+-..|.|+.+|++-
T Consensus 12 liv~~iiaIvvW~iv~ieYrk~~rqrkId~li~R 45 (81)
T PF00558_consen 12 LIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIER 45 (81)
T ss_dssp HHHHHHHHHHHHHHH------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4456666777777778888888888888888876
No 85
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=64.34 E-value=13 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKRe 81 (105)
+.+++.+........+.++++||
T Consensus 7 ~~~i~~~~~~~~~~~~~~~~~~~ 29 (121)
T PF02687_consen 7 LLLIAIFILFNIISSSIRERRRE 29 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333333
No 86
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=63.94 E-value=2.6 Score=32.24 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=24.6
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
..+...+++++++..+++.++.+..|++.+|+|---
T Consensus 98 t~Yia~~~il~il~~i~is~~~~~~yr~~r~~~~~~ 133 (139)
T PHA03099 98 TSYIPSPGIVLVLVGIIITCCLLSVYRFTRRTKLPL 133 (139)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhheeeecccCch
Confidence 344455565666655677778888999988887543
No 87
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=63.65 E-value=9.2 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=19.9
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~ 87 (105)
+.++..+.++.+.+...|+.++.|||.+.++.-
T Consensus 440 ~~~~~~~~~~~~~v~~~~~~~~n~k~~~~~~~~ 472 (495)
T KOG2533|consen 440 MLVAACVGIVLLLVILFYKERENKKRDKLLEED 472 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 344444445555556677777777777766544
No 88
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=63.57 E-value=7.4 Score=28.59 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCceeehhHHHHHH--HHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVA--VGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 50 tg~~v~ii~lg~va--~~~~~~~~yK~WqkkKR 80 (105)
++..|..+++|++. -+++++++|++|.++=.
T Consensus 8 ~~a~Ia~mVlGFi~fWPlGla~Lay~iw~~rm~ 40 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVFWPLGLALLAYMIWGKRMF 40 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566777777763 35667889999996533
No 89
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=63.53 E-value=12 Score=28.70 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 034055 65 GLFSFFLFKLWQKKK 79 (105)
Q Consensus 65 ~~~~~~~yK~WqkkK 79 (105)
+++++..|--+||||
T Consensus 128 lvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 128 LVGAVSSYIAYQKKK 142 (169)
T ss_pred HHHHHHHHHHHHhhc
Confidence 344555666678876
No 90
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=63.48 E-value=12 Score=30.72 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=32.2
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lK 89 (105)
-|.|+++.+|.||+-...-|+-=+|+|+..|+-.+|+
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmkKKlQYiKLL~ 298 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLK 298 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4566667888899999999999999999999999886
No 91
>PRK10506 hypothetical protein; Provisional
Probab=63.43 E-value=20 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034055 64 VGLFSFFLFKLWQKKKREEQYARLLKLF 91 (105)
Q Consensus 64 ~~~~~~~~yK~WqkkKRe~q~AR~lKLF 91 (105)
++..++..|.-|+.+.|-++.++-++-|
T Consensus 26 l~~~a~p~~~~~~~~~~~~~~~~~l~~~ 53 (162)
T PRK10506 26 LSAWGLYGWQRWQQRQRLWQTAQQLLDF 53 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667788888888887776654
No 92
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=63.29 E-value=20 Score=31.27 Aligned_cols=31 Identities=16% Similarity=0.062 Sum_probs=19.5
Q ss_pred CCCceeehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 49 NTGAKVGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 49 ~tg~~v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
.+|..-+..|+.++++.+.+.++|-+||..+
T Consensus 28 k~g~g~~l~~~all~aLgLGagg~~f~QqQ~ 58 (391)
T COG2959 28 KNGAGLLLSLAALLLALGLGAGGYYFGQQQN 58 (391)
T ss_pred CCCchhHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 4444445556666666666677888888654
No 93
>PRK11677 hypothetical protein; Provisional
Probab=63.07 E-value=7.7 Score=28.69 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=13.4
Q ss_pred eehhHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQ 76 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wq 76 (105)
.+++++|+++.+++++++.++-.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556666666666666666533
No 94
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=63.03 E-value=2.7 Score=33.05 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=18.7
Q ss_pred eeehhHHH--HHHHHHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLG--LVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 53 ~v~ii~lg--~va~~~~~~~~yK~WqkkKRe 81 (105)
.++-|.+| ++++++.++.+|-++|||.|.
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 33444444 345666677789999888764
No 95
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=62.93 E-value=17 Score=22.60 Aligned_cols=17 Identities=0% Similarity=0.284 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 62 va~~~~~~~~yK~Wqkk 78 (105)
++++......+.|.+.+
T Consensus 55 ~~~~~~~~~~~ry~~~~ 71 (73)
T PF02656_consen 55 LGLLTLIYGIYRYRRRR 71 (73)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444455555444
No 96
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=62.52 E-value=6.1 Score=33.66 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 034055 75 WQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 75 WqkkKRe~q~AR~lKLFEe 93 (105)
+||||+-......+||.+|
T Consensus 335 YRRKKKMkKKLQYiKLL~e 353 (353)
T TIGR01477 335 YRRKKKMKKKLQYIKLLNE 353 (353)
T ss_pred hhhcchhHHHHHHHHHhcc
Confidence 4566666666667777665
No 97
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=62.42 E-value=12 Score=29.69 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=13.6
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~W 75 (105)
....+|++++|.+++..+++.-+.
T Consensus 29 thm~tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778776555544444333
No 98
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=62.15 E-value=7.2 Score=29.70 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 67 FSFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
.-.++=+||++ --++||+||.++|.+
T Consensus 74 s~~vLG~~wr~-as~eQr~~F~~~F~~ 99 (211)
T PRK15117 74 GALVLGRYYKD-ATPAQREAYFAAFRE 99 (211)
T ss_pred HHHHhhhhhhh-CCHHHHHHHHHHHHH
Confidence 44556789976 778899999999975
No 99
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=62.03 E-value=5.2 Score=33.55 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKRe~q 83 (105)
++++++++++++|+++|-+|.|
T Consensus 19 ~~v~g~~y~~~~y~~~kl~e~q 40 (432)
T PF04882_consen 19 GGVVGGGYLLYQYAQKKLREQQ 40 (432)
T ss_dssp ---------------------H
T ss_pred cccccccccccccccccccccc
Confidence 3455566679999999844433
No 100
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=61.89 E-value=17 Score=26.62 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=10.9
Q ss_pred CceeehhHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLF 72 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~y 72 (105)
.+.++||+++++.+++++.+.|
T Consensus 18 kkliiii~~~~lll~~~g~~~~ 39 (170)
T PRK05696 18 KKLIIIIVIGVLLALGGGGAAW 39 (170)
T ss_pred eeEEeeHHHHHHHHHHHHHHHH
Confidence 3345555555555554444444
No 101
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=61.10 E-value=2.7 Score=35.74 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKKRE 81 (105)
Q Consensus 68 ~~~~yK~WqkkKRe 81 (105)
.+.+++..+||+|+
T Consensus 373 ~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 373 WVCLRCRRRRRQRD 386 (439)
T ss_dssp --------------
T ss_pred heeeeehhcccccc
Confidence 33444555555555
No 102
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=60.91 E-value=27 Score=28.16 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 48 GNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 48 ~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
...+...+-.+|.++-+.++.=..+.|||=||-|+
T Consensus 189 ~~~~~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 189 ASQSNPWLAYILMAFGWFIFIRSIIDYWRVKRMER 223 (233)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666667777899999988876
No 103
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=60.76 E-value=21 Score=26.80 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=17.6
Q ss_pred ehhHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~ 74 (105)
|+|++++++++++.+++|-+
T Consensus 1 ~~ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 1 MIIIIAIVALIVGIGIGYLV 20 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 57888999999999998877
No 104
>PRK10847 hypothetical protein; Provisional
Probab=60.51 E-value=11 Score=28.32 Aligned_cols=15 Identities=13% Similarity=0.501 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 034055 70 FLFKLWQKKKREEQY 84 (105)
Q Consensus 70 ~~yK~WqkkKRe~q~ 84 (105)
++..+|||++|.++.
T Consensus 203 ~~~~~~r~~~~~~~~ 217 (219)
T PRK10847 203 GVIEIWRHKRAAARA 217 (219)
T ss_pred HHHHHHHHHhhhhhc
Confidence 445688877766543
No 105
>PF13584 BatD: Oxygen tolerance
Probab=60.27 E-value=8 Score=31.51 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
+.++.++.++++..+++-+|+|++|..
T Consensus 428 ~~~l~~~~~l~~~~~~~~~~~~~~~~~ 454 (484)
T PF13584_consen 428 FWLLLLLPLLLLLLLLILRRKRRKRQS 454 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 334433434433333444444555543
No 106
>PRK01844 hypothetical protein; Provisional
Probab=60.20 E-value=9.6 Score=26.20 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFL 71 (105)
Q Consensus 57 i~lg~va~~~~~~~~ 71 (105)
|++++++++++++++
T Consensus 7 I~l~I~~li~G~~~G 21 (72)
T PRK01844 7 ILVGVVALVAGVALG 21 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 107
>PTZ00046 rifin; Provisional
Probab=60.09 E-value=6.6 Score=33.49 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 034055 75 WQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 75 WqkkKRe~q~AR~lKLFEe 93 (105)
+||||+-......+||.+|
T Consensus 340 YRRKKKMkKKLQYiKLL~e 358 (358)
T PTZ00046 340 YRRKKKMKKKLQYIKLLEE 358 (358)
T ss_pred hhhcchhHHHHHHHHHhcc
Confidence 4566666666677777765
No 108
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=60.04 E-value=15 Score=26.02 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 66 LFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 66 ~~~~~~yK~WqkkKRe~q~AR 86 (105)
+.+.+-.-.|+.|||+..-++
T Consensus 13 l~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 13 LSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred HHHHHHHHHHHHHhhhccccC
Confidence 334445667888887765443
No 109
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=59.70 E-value=8.2 Score=28.47 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=22.2
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhc
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVEL 101 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~EL 101 (105)
-.|-++|+++++++.. .|.++--| |.||| ||+|||.
T Consensus 59 N~is~a~i~alViaIY-~YTfYSik-----QErFL------dEiddEa 94 (108)
T KOG4782|consen 59 NHISFAGIGALVIAIY-GYTFYSIK-----QERFL------DEIDDEA 94 (108)
T ss_pred hhhhhHHHHHHHHHhh-hheeeehh-----HHHHH------HHHHHHH
Confidence 3566778888777654 45555433 56887 5666653
No 110
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=59.40 E-value=13 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.6
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
+|++.+++.+++++++++.++-.|+-.
T Consensus 1 kk~la~i~avvvV~~~a~~g~~~~~~~ 27 (161)
T PF10969_consen 1 KKILALIAAVVVVVAAAVVGVGWWQLR 27 (161)
T ss_pred CceeehhHHHHHHHHHHHHHHHHHHhC
Confidence 467777777777777777777788853
No 111
>PRK01741 cell division protein ZipA; Provisional
Probab=59.03 E-value=13 Score=31.54 Aligned_cols=30 Identities=17% Similarity=0.515 Sum_probs=19.5
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q 83 (105)
+..|+|+||++|+++. +++-+|--++..-|
T Consensus 3 Ln~iliILg~lal~~L--v~hgiWsnRrEKSq 32 (332)
T PRK01741 3 LNTILIILGILALVAL--VAHGIWSNRREKSQ 32 (332)
T ss_pred ceehHHHHHHHHHHHH--HHhhhhhhhhHHHH
Confidence 4567888888877654 46778876544333
No 112
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=59.02 E-value=27 Score=24.46 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 034055 80 REEQYARLLK 89 (105)
Q Consensus 80 Re~q~AR~lK 89 (105)
|++-+.|+|+
T Consensus 70 ~~~~~~~~l~ 79 (84)
T PF06143_consen 70 RQQREKTYLA 79 (84)
T ss_pred HHHHHHHHHH
Confidence 3334445553
No 113
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=58.86 E-value=4.6 Score=32.57 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=24.6
Q ss_pred ccccCCCCceeehhHHHHHHHHHHHHHHHH
Q 034055 44 HTSRGNTGAKVGIVLLGLVAVGLFSFFLFK 73 (105)
Q Consensus 44 ~~s~~~tg~~v~ii~lg~va~~~~~~~~yK 73 (105)
++|+++.+-|.++|++.++|+.+++-.+||
T Consensus 251 ~sssssi~nkLi~vl~if~aI~iflGIaYK 280 (280)
T PF06022_consen 251 TSSSSSIANKLIPVLSIFGAIPIFLGIAYK 280 (280)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhheecC
Confidence 457778899999999999998888777765
No 114
>PRK03427 cell division protein ZipA; Provisional
Probab=58.35 E-value=6 Score=33.43 Aligned_cols=25 Identities=16% Similarity=0.598 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
+||+.|+|+++.++++--+|--+|.
T Consensus 7 LiLivvGAIAIiAlL~HGlWtsRKe 31 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFWTSRKE 31 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhcccc
Confidence 4666777777777888888965553
No 115
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.17 E-value=16 Score=25.97 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~Wqkk 78 (105)
++|+++-+++++++.++-.++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 334443333444455554444
No 116
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=57.94 E-value=34 Score=22.26 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=11.7
Q ss_pred CceeehhHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFK 73 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK 73 (105)
..+.++++++.++.++.++..+.
T Consensus 50 ~~~~~~~~l~~~~~~~~~~~~~~ 72 (112)
T PF14015_consen 50 WLKLVAAILSALAAILASLAAFF 72 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556655544444444443
No 117
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=57.66 E-value=39 Score=21.75 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQ 76 (105)
Q Consensus 59 lg~va~~~~~~~~yK~Wq 76 (105)
++++.+++++++++-+|+
T Consensus 12 f~~~~~l~~~~~~~~~~~ 29 (181)
T PF12729_consen 12 FGLIILLLLIVGIVGLYS 29 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334333333344444443
No 118
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=57.37 E-value=32 Score=23.74 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=13.7
Q ss_pred eehhHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQ 76 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wq 76 (105)
.+.+.+++++++++++..|-.|+
T Consensus 4 ~~~~~l~~lvl~L~~~l~~qs~~ 26 (110)
T PF10828_consen 4 YIYIALAVLVLGLGGWLWYQSQR 26 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555554
No 119
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=57.15 E-value=21 Score=29.94 Aligned_cols=29 Identities=28% Similarity=0.151 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQ-KKKREEQYAR 86 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~Wq-kkKRe~q~AR 86 (105)
++++.|+.+++.++|.|-+ +|+|.++++|
T Consensus 77 ~~~t~Alg~~~~g~~~Y~~~~k~~~~e~~r 106 (280)
T KOG2792|consen 77 LLATFALGLGLGGALAYLKKEKARLLEKER 106 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666667788877 5555566655
No 120
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=56.90 E-value=8.6 Score=23.31 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKRe 81 (105)
+.+.+++|++||.+|.+-+|
T Consensus 8 L~l~ga~f~~fKKyQ~~vnq 27 (33)
T PF10855_consen 8 LILGGAAFYGFKKYQNHVNQ 27 (33)
T ss_pred hhhhhHHHHHHHHHHHHHhc
Confidence 34455788999999976543
No 121
>PHA02650 hypothetical protein; Provisional
Probab=56.61 E-value=8.5 Score=27.19 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=12.2
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~ 74 (105)
++.+...++|+++.++.++++.|.-.|.
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 122
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=56.51 E-value=31 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=15.9
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
+|.+=..++.|+.++..+.+..+..+.|.+||
T Consensus 27 rg~sg~~~~~~~~~~~~~G~y~~~~~~r~~r~ 58 (130)
T PF06212_consen 27 RGPSGWTMFAGGAGIMAYGFYKVGQGNRERRE 58 (130)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555454443
No 123
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=56.46 E-value=11 Score=34.24 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKR 80 (105)
.+.+..+.++-+||.||.
T Consensus 572 C~~il~ii~~Lh~~EKke 589 (606)
T KOG4550|consen 572 CVFILAIIGILHWQEKKE 589 (606)
T ss_pred HHHHHHHHhheehhhhhh
Confidence 333445567889998863
No 124
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=54.14 E-value=16 Score=29.89 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=21.7
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
.+.+|.+.++.+.++++++++.|++|..+||.+
T Consensus 204 D~e~iFLY~~l~a~~~l~l~~~~~~l~~~~kkr 236 (285)
T PF03896_consen 204 DPETIFLYLFLAALGVLGLYFVYQFLPSSKKKR 236 (285)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445555555555566777888899998665543
No 125
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=53.73 E-value=17 Score=28.03 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcc
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKR-------EEQYARLLKLFEE 93 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKR-------e~q~AR~lKLFEe 93 (105)
++.+++.-.+=+++++++.++++.+=+|+.| +++++|+-.|.++
T Consensus 102 ~~~T~lLW~~Pv~llllG~~~~~~~~rrr~~~~~~~Ls~ee~~rl~~ll~~ 152 (153)
T COG3088 102 TGQTLLLWGLPVVLLLLGGVLLVRRARRRVREPPQTLSAEEEARLARLLRG 152 (153)
T ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCCChhHHHHHHHHhcC
Confidence 4566666666667777777777776666532 2667777666554
No 126
>PRK11387 S-methylmethionine transporter; Provisional
Probab=53.72 E-value=12 Score=30.35 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHH
Q 034055 65 GLFSFFLFKLWQKKKRE-EQYAR 86 (105)
Q Consensus 65 ~~~~~~~yK~WqkkKRe-~q~AR 86 (105)
++..+..|++|+|+||. .|.||
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T PRK11387 445 VALCYGAYYLTQRLKRNMTQEAR 467 (471)
T ss_pred HHHHHHHHHHhccccccccHhhh
Confidence 44566788988776554 45555
No 127
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=53.61 E-value=18 Score=25.24 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=10.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
++++|.++++++++++...-=+|++|
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34443333333333333333455554
No 128
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=53.20 E-value=5 Score=27.69 Aligned_cols=13 Identities=38% Similarity=0.391 Sum_probs=6.7
Q ss_pred cCCCCceeehhHH
Q 034055 47 RGNTGAKVGIVLL 59 (105)
Q Consensus 47 ~~~tg~~v~ii~l 59 (105)
+.++|..+-|++-
T Consensus 62 ~ls~gaiagi~vg 74 (96)
T PTZ00382 62 GLSTGAIAGISVA 74 (96)
T ss_pred CcccccEEEEEee
Confidence 4455655555443
No 129
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=53.15 E-value=35 Score=26.38 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=12.2
Q ss_pred HHHHhhhccchhhhhhc
Q 034055 85 ARLLKLFEEDDELEVEL 101 (105)
Q Consensus 85 AR~lKLFEedDdle~EL 101 (105)
.|||++.-+.-|.|.|+
T Consensus 84 r~~l~~lrkn~eeEaei 100 (146)
T KOG3300|consen 84 RRFLSELRKNLEEEAEI 100 (146)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 37888877777777664
No 130
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=53.10 E-value=5.3 Score=32.62 Aligned_cols=26 Identities=23% Similarity=0.724 Sum_probs=16.5
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
++.++|++|++|+++.+| .-+|..||
T Consensus 2 Lr~iLIIvGaiaI~aLl~--hGlwt~Rk 27 (284)
T TIGR02205 2 LRIILIIVGILAIAALLF--HGLWTSRK 27 (284)
T ss_pred ceehHHHHHHHHHHHHHH--cccccccc
Confidence 466777777777665544 45676655
No 131
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=53.10 E-value=4.5 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=0.4
Q ss_pred CCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 49 NTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 49 ~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~ 84 (105)
.+|.+.+.-+.-+++++++.++++.+.+|++|...+
T Consensus 97 ~~~~~~~lW~~P~~~l~~g~~~~~~~~rr~~~~~~~ 132 (148)
T PF03918_consen 97 FKGFTWLLWLGPFLLLLLGGALLFRRLRRWRRRAAQ 132 (148)
T ss_dssp S-----------------------------------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 355666666777777777777888887777776654
No 132
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.53 E-value=37 Score=21.76 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=6.3
Q ss_pred ehhHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFS 68 (105)
Q Consensus 55 ~ii~lg~va~~~~~ 68 (105)
++|.+.++++++.+
T Consensus 15 lLVvl~Iigil~~~ 28 (149)
T COG2165 15 LLVVLAIIGILAAL 28 (149)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444554443
No 133
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=52.35 E-value=4.2 Score=27.41 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~ 82 (105)
|+++..|..| +-|||.|
T Consensus 25 ailLIlf~iy---R~rkkdE 41 (64)
T PF01034_consen 25 AILLILFLIY---RMRKKDE 41 (64)
T ss_dssp ---------------S----
T ss_pred HHHHHHHHHH---HHHhcCC
Confidence 4444444444 4455543
No 134
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=52.31 E-value=54 Score=24.37 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhh
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVE 100 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~E 100 (105)
++++++++++++.+...-+=+=+|..++|.+|++ -.++.++|+-
T Consensus 4 ~i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~-g~~~~~lE~~ 47 (151)
T PF14584_consen 4 IIGLLVLVIILLILIIILNIKLRKLKRRYDALMR-GKDGKNLEDL 47 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccHHHH
Confidence 3333444444433333322233444555666554 3444455543
No 135
>PHA02898 virion envelope protein; Provisional
Probab=52.26 E-value=21 Score=25.80 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=20.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
.-|+++.++.+++...+.|+-|.|+
T Consensus 47 lSii~FIlgivl~lG~~ifs~y~r~ 71 (92)
T PHA02898 47 ISIISFILAIILILGIIFFKGYNMF 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4467777778888888899999975
No 136
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=52.24 E-value=20 Score=30.80 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 64 VGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 64 ~~~~~~~~yK~WqkkKR 80 (105)
+++.+++++-+|+||+|
T Consensus 534 ~~~l~~G~~~~~~Rrr~ 550 (552)
T TIGR03521 534 LLLLLFGLSFTYIRKRK 550 (552)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44455666666777665
No 137
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=52.10 E-value=73 Score=23.30 Aligned_cols=6 Identities=33% Similarity=1.065 Sum_probs=2.5
Q ss_pred HHHHHH
Q 034055 67 FSFFLF 72 (105)
Q Consensus 67 ~~~~~y 72 (105)
.+.|.|
T Consensus 69 ~aIFly 74 (149)
T PF14126_consen 69 IAIFLY 74 (149)
T ss_pred HHHHcc
Confidence 344444
No 138
>PHA03048 IMV membrane protein; Provisional
Probab=51.73 E-value=18 Score=26.12 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=20.4
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
-.-|+++.++.+++...+.|+-|.|+
T Consensus 45 alsii~FIlgivl~lG~~ifsmy~r~ 70 (93)
T PHA03048 45 ALSGIAFVLGIVMTIGMLIYSMWGRY 70 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34467777788888888999999964
No 139
>PRK00523 hypothetical protein; Provisional
Probab=51.45 E-value=25 Score=24.13 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=8.6
Q ss_pred ehhHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLF 72 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~y 72 (105)
+.|+++++|++++++++|
T Consensus 6 l~I~l~i~~li~G~~~Gf 23 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGY 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555554444433
No 140
>PRK00523 hypothetical protein; Provisional
Probab=51.39 E-value=17 Score=24.95 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=18.1
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
+|.-|+++++++++-+++.||.-+.|-+|.
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777766655555555555554443
No 141
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=51.37 E-value=19 Score=25.23 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=14.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
++++++++.++++++++|..|++.
T Consensus 6 ~~~~~~v~~vv~~~~~~w~~~~~~ 29 (112)
T PF14155_consen 6 LVIAGAVLVVVAGAVVAWFGYSQF 29 (112)
T ss_pred eEehHHHHHHHHHHHHhHhhhhhc
Confidence 344455555666666677777753
No 142
>PTZ00230 variable surface protein Vir7; Provisional
Probab=51.29 E-value=14 Score=30.96 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=20.8
Q ss_pred ccCCCCceeehhHHHHHHHHHHHHHHHHH
Q 034055 46 SRGNTGAKVGIVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 46 s~~~tg~~v~ii~lg~va~~~~~~~~yK~ 74 (105)
+.|.|+++|... ++|+.+++.++++|||
T Consensus 286 ~~~~~~~~~~~~-~~~~g~~~~~~~~y~~ 313 (364)
T PTZ00230 286 PTSITSKSITGA-VSVAGFLVPSYLMYNY 313 (364)
T ss_pred CCCccccceeee-eehHHHHHHHHHHhcc
Confidence 455566666644 7788888889999997
No 143
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=51.26 E-value=24 Score=24.28 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=6.0
Q ss_pred hhhccccCCC
Q 034055 22 QFIPAISDDP 31 (105)
Q Consensus 22 qf~~gls~d~ 31 (105)
-|..|+..+.
T Consensus 18 ~~~p~~~~~~ 27 (85)
T TIGR01495 18 FIAPGYCNNG 27 (85)
T ss_pred hCccccccch
Confidence 3666777653
No 144
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=50.93 E-value=11 Score=24.87 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=20.1
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
+-|++++++..++..|..||..-||+-
T Consensus 6 iG~~~~~~~I~~lIgfity~mfV~K~s 32 (53)
T PF13131_consen 6 IGIILFTIFIFFLIGFITYKMFVKKAS 32 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheecCC
Confidence 345666777777778888999988864
No 145
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=50.20 E-value=19 Score=25.93 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
.-|+|+.++.+++..++.|+.|++=.
T Consensus 48 lSii~FIlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 48 LSVTCFIVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34677777777777789999998533
No 146
>PF14163 SieB: Superinfection exclusion protein B
Probab=50.06 E-value=59 Score=22.97 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 034055 75 WQKKKREEQYA 85 (105)
Q Consensus 75 WqkkKRe~q~A 85 (105)
|++|++++.+.
T Consensus 63 ~~~k~~~~~~~ 73 (151)
T PF14163_consen 63 YQRKRKKKKIE 73 (151)
T ss_pred HHHHHHHHHHH
Confidence 55555544333
No 147
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=49.96 E-value=43 Score=25.35 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=30.6
Q ss_pred ceeehhHHHHHHHHHHHHH--HHHHHHHHHH------HHHHHHHHhhhcc
Q 034055 52 AKVGIVLLGLVAVGLFSFF--LFKLWQKKKR------EEQYARLLKLFEE 93 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~--~yK~WqkkKR------e~q~AR~lKLFEe 93 (105)
.+++-++||+++.+++.-. -|-|++|.++ .+.|+..+|+.+-
T Consensus 68 ~pflSf~lG~~~m~~~~~~~~k~~y~kk~~~l~~~~~~~~q~~vwk~m~~ 117 (152)
T PF07954_consen 68 KPFLSFLLGLGAMMAGSQLAGKYQYNKKLNSLDPDSSKQRQYEVWKLMDY 117 (152)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHhccc
Confidence 5778889999988887544 4556666666 5677888887764
No 148
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=49.84 E-value=18 Score=24.05 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHhhhccchhhhhhc
Q 034055 65 GLFSFFLFKLWQ-----KKKREEQYARLLKLFEEDDELEVEL 101 (105)
Q Consensus 65 ~~~~~~~yK~Wq-----kkKRe~q~AR~lKLFEedDdle~EL 101 (105)
+++++++|-||- .||-++++.+.=+|== +|+++|++
T Consensus 9 i~lvv~LYgY~yhLYrsek~G~rdYEKY~~LAL-~D~ldd~~ 49 (56)
T TIGR02736 9 LLLVIFLYAYIYHLYRSQKKGERDYEKYANLAL-NDDLDDSL 49 (56)
T ss_pred HHHHHHHHHHHHHhhhhhcccccCHHHHhhhhc-cccccchh
Confidence 334555666662 3344466666655533 45555553
No 149
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=49.55 E-value=90 Score=26.62 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 034055 74 LWQKKKREEQYA 85 (105)
Q Consensus 74 ~WqkkKRe~q~A 85 (105)
||++.+..++++
T Consensus 56 ~~~~qq~~~~~~ 67 (390)
T PRK10920 56 YHGKQQAQNQTA 67 (390)
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
No 150
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.28 E-value=10 Score=27.74 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=19.9
Q ss_pred cccccccCCCCceeehhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 034055 41 AAHHTSRGNTGAKVGIVLLGL-VAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 41 ~~h~~s~~~tg~~v~ii~lg~-va~~~~~~~~yK~WqkkKRe 81 (105)
-.|.-+.+.....|+-|..|+ +.+++.+|++-+.=+|.+..
T Consensus 57 l~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 57 LVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp SSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred cccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 345556666555555455544 46667777777776666544
No 151
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=49.20 E-value=45 Score=28.73 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhccchhhhhhcC
Q 034055 61 LVAVGLFSFFLFKLWQKKKREEQ------YARLLKLFEEDDELEVELG 102 (105)
Q Consensus 61 ~va~~~~~~~~yK~WqkkKRe~q------~AR~lKLFEedDdle~ELG 102 (105)
++++++.++++|+-+|.|.+=+. |.-|-.|-..=|-++++||
T Consensus 9 ~~~~v~~g~wgy~~~~ek~~~~~~~en~YqRaf~dL~~~vd~l~~~L~ 56 (435)
T TIGR02889 9 SIAVVGLGAWGYLQTQEKNDLRNYLQAQYQRAFYELTYHVEQIEAQLG 56 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667778888888776332 2346777777888888886
No 152
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=49.15 E-value=43 Score=22.74 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhccchhhhh
Q 034055 81 EEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 81 e~q~AR~lKLFEedDdle~ 99 (105)
++++.++-.|.+.-+-+++
T Consensus 38 ~~d~~~L~~L~~~a~rm~e 56 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEE 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777766655544
No 153
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=48.85 E-value=16 Score=27.49 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 68 SFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
-+++=++|++ --++|+++|.++|.+
T Consensus 71 r~vLG~~W~~-~s~~Qr~~F~~~F~~ 95 (198)
T TIGR03481 71 RLTLGSSWTS-LSPEQRRRFIGAFRE 95 (198)
T ss_pred HHHhhhhhhh-CCHHHHHHHHHHHHH
Confidence 3445579977 667889999999975
No 154
>PRK04335 cell division protein ZipA; Provisional
Probab=48.79 E-value=11 Score=31.53 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
+||+.|+|++++++++--+|--||
T Consensus 6 lvLiivGAlAI~ALL~HGlWtsrK 29 (313)
T PRK04335 6 FVLIVVGALAIAALLFHGLWTSKK 29 (313)
T ss_pred ehHHHHHHHHHHHHHHhccccccc
Confidence 344445555556666778897666
No 155
>PRK01844 hypothetical protein; Provisional
Probab=47.89 E-value=38 Score=23.26 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=17.2
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
++.-++++++++++-+++.||.-+.|-+|
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777665555555555555444
No 156
>PF07006 DUF1310: Protein of unknown function (DUF1310); InterPro: IPR010738 This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.
Probab=47.65 E-value=3.2 Score=30.10 Aligned_cols=22 Identities=18% Similarity=-0.069 Sum_probs=13.6
Q ss_pred eeehhHHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~ 74 (105)
+++++++++++++++..+.+.+
T Consensus 2 ~~i~~~~~~l~~i~~~~g~~~~ 23 (122)
T PF07006_consen 2 KWIIIIIIILLVIIGIGGGFYM 23 (122)
T ss_pred EEEEEeHHHHHHHHhheeEEEE
Confidence 5677777777666655444433
No 157
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=47.16 E-value=24 Score=27.10 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=20.4
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
..|++++++.++++.+++++.+-||+.++.
T Consensus 7 ~~kl~l~~~~~~~v~~~~~~~~~~~~~~~~ 36 (607)
T PRK11360 7 RNQLILLVILLVIVPTLLIGYILETEGRSA 36 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 567777777777777777777777755443
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=47.04 E-value=67 Score=25.67 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=3.7
Q ss_pred cccCCC
Q 034055 26 AISDDP 31 (105)
Q Consensus 26 gls~d~ 31 (105)
-+++||
T Consensus 20 ~~~~~~ 25 (398)
T PRK10747 20 MIAGHQ 25 (398)
T ss_pred HHcCCC
Confidence 366666
No 159
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=46.99 E-value=61 Score=21.47 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 034055 68 SFFLFKLWQK 77 (105)
Q Consensus 68 ~~~~yK~Wqk 77 (105)
..+.+-+|++
T Consensus 20 ~~~~~~~~~~ 29 (148)
T PF12158_consen 20 IGGIFLYWRR 29 (148)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 160
>PHA02844 putative transmembrane protein; Provisional
Probab=46.95 E-value=28 Score=24.24 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 034055 61 LVAVGLFSFFLF 72 (105)
Q Consensus 61 ~va~~~~~~~~y 72 (105)
++++++++++.|
T Consensus 55 i~~v~~~~~~~f 66 (75)
T PHA02844 55 IIFVVFATFLTF 66 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 161
>PHA02975 hypothetical protein; Provisional
Probab=46.87 E-value=17 Score=25.00 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=3.9
Q ss_pred CCCCceeehh
Q 034055 48 GNTGAKVGIV 57 (105)
Q Consensus 48 ~~tg~~v~ii 57 (105)
+++...++|+
T Consensus 41 ~~~~~~~ii~ 50 (69)
T PHA02975 41 SSLSIILIIF 50 (69)
T ss_pred CchHHHHHHH
Confidence 3333344443
No 162
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=46.60 E-value=26 Score=29.08 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=17.6
Q ss_pred ceeehhHHHH--HHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGL--VAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 52 ~~v~ii~lg~--va~~~~~~~~yK~WqkkKR 80 (105)
++.+|+++|. +.++++++++.++|-|+++
T Consensus 337 kr~lIlvl~~llG~~lg~~~vL~r~~~r~~~ 367 (377)
T PRK10381 337 GKALIVILAALIGGMLACGFVLLRHAMRSRK 367 (377)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666643 3555556777877766554
No 163
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=46.16 E-value=18 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=18.7
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wqk 77 (105)
+.+|++-+++||++-..+.||--|
T Consensus 5 ~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 5 PWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred hhHHHHHHHHHHHhHHHHHHHhcc
Confidence 445666677888888889999877
No 164
>PHA02088 hypothetical protein
Probab=46.05 E-value=48 Score=24.92 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=14.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHH
Q 034055 64 VGLFSFFLF-KLWQKKKREEQYA 85 (105)
Q Consensus 64 ~~~~~~~~y-K~WqkkKRe~q~A 85 (105)
++.+.|-.+ ..|+||-|.||.+
T Consensus 14 liac~~s~wd~~w~~k~~~e~~~ 36 (125)
T PHA02088 14 LIACCFSTWDSRWRKKARNEQAK 36 (125)
T ss_pred HHHhhhHHhhHHHHHHHHHHHHH
Confidence 344444444 6899888888765
No 165
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=46.02 E-value=25 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=14.0
Q ss_pred CceeehhHH-HHHHHHHH--HHHHHHHHH
Q 034055 51 GAKVGIVLL-GLVAVGLF--SFFLFKLWQ 76 (105)
Q Consensus 51 g~~v~ii~l-g~va~~~~--~~~~yK~Wq 76 (105)
=.+|||.++ |+++||+. ++++.+||+
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 356666666 55544443 344456555
No 166
>PHA02047 phage lambda Rz1-like protein
Probab=45.94 E-value=52 Score=24.09 Aligned_cols=16 Identities=38% Similarity=0.438 Sum_probs=8.3
Q ss_pred HHHHHHHHH---HHHH-HHHH
Q 034055 59 LGLVAVGLF---SFFL-FKLW 75 (105)
Q Consensus 59 lg~va~~~~---~~~~-yK~W 75 (105)
+.+|+++++ .|+. |+ |
T Consensus 9 ~~~v~~~~g~~y~~~~~~r-~ 28 (101)
T PHA02047 9 LVLVVVALGASYGFVQSYR-A 28 (101)
T ss_pred HHHHHHHhhhhHHHHHHHH-H
Confidence 344555555 4555 66 6
No 167
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=45.58 E-value=59 Score=20.45 Aligned_cols=12 Identities=0% Similarity=0.293 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKK 78 (105)
Q Consensus 67 ~~~~~yK~Wqkk 78 (105)
+++-.|.+-+..
T Consensus 32 ~~~~~y~~~~~~ 43 (59)
T PF14880_consen 32 TVYTVYSYFKYN 43 (59)
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 168
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=45.50 E-value=37 Score=25.56 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=14.6
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
++..|..++++++.+| +.+++.++|-+|-=+|
T Consensus 12 ~~~k~~~~I~liv~iv-l~~~a~~~~~~~~~~~ 43 (159)
T COG1580 12 KKKKKSLWILLIVLIV-LLALAGAGYFFWFGSK 43 (159)
T ss_pred cCCCceeehHHHHHHH-HHHHHHHHHHHhhhcc
Confidence 3344433333333333 3334445666776543
No 169
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=45.30 E-value=47 Score=20.92 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=26.0
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
-..+.--++++++++.+..+.+|..++-.+|
T Consensus 41 ~~~p~G~~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 41 LEQPFGRWLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577778899999999999999999887665
No 170
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=45.09 E-value=48 Score=22.21 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKRe 81 (105)
|+.|+..+..+.|-.+.-++||
T Consensus 13 G~fA~LFv~Ll~yvlK~~~~re 34 (71)
T PF10960_consen 13 GIFAVLFVWLLFYVLKENKKRE 34 (71)
T ss_pred CcHHHHHHHHHHHHHHHhHHhH
Confidence 5556666666677777777433
No 171
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=44.33 E-value=29 Score=26.20 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 034055 70 FLFKLWQKKKREEQYA 85 (105)
Q Consensus 70 ~~yK~WqkkKRe~q~A 85 (105)
..++-=|||||++.|.
T Consensus 100 lcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 100 LCWKPIIRKKKKKRRE 115 (129)
T ss_pred heehhhhHhHHHHhhh
Confidence 4555556666655443
No 172
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=44.16 E-value=7.2 Score=22.77 Aligned_cols=11 Identities=64% Similarity=0.755 Sum_probs=7.7
Q ss_pred hhccchhhhhh
Q 034055 90 LFEEDDELEVE 100 (105)
Q Consensus 90 LFEedDdle~E 100 (105)
||..|||.||+
T Consensus 1 LFGSddEeed~ 11 (28)
T PF10587_consen 1 LFGSDDEEEDE 11 (28)
T ss_pred CCCCccccccH
Confidence 68888875554
No 173
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.85 E-value=29 Score=30.83 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhhccccCCCCCCcCCCcccccccccCCCCceeehhHHHHHHHHHHHHHHHHHHHH
Q 034055 12 FLLLISSICLQFIPAISDDPSSTKKGKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 12 ~ll~~~si~lqf~~gls~d~s~sk~~~k~~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~yK~Wqk 77 (105)
.+|++..+-|-|+|-|++=++. -+|+-.|+ .+...++++++|++|.|++
T Consensus 395 iiLalm~VlLvfVSTIa~~v~P---LmkSR~rt--------------~~t~~LV~l~~~~wkhwd~ 443 (455)
T KOG3850|consen 395 IILALMTVLLVFVSTIANCVSP---LMKSRNRT--------------ASTFFLVFLLAFFWKHWDA 443 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhccH---HhhhhhHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888887753 12233332 2333344455668999986
No 174
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.25 E-value=29 Score=27.14 Aligned_cols=24 Identities=13% Similarity=0.420 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
|++++++.+++.+.++|-||+-+|
T Consensus 9 i~ii~viflai~~s~~~~~~~s~~ 32 (161)
T COG5353 9 IIIILVIFLAIILSIALFFWKSMK 32 (161)
T ss_pred ehhHHHHHHHHHHHHHHHHhHhcC
Confidence 333344444444555777898776
No 175
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=43.23 E-value=8.8 Score=34.08 Aligned_cols=23 Identities=39% Similarity=0.845 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHH-HHHHHH
Q 034055 60 GLVAVGLFSFFLFK-LWQ-KKKREE 82 (105)
Q Consensus 60 g~va~~~~~~~~yK-~Wq-kkKRe~ 82 (105)
|++.++++++..|| +|. ||++++
T Consensus 439 ~~~~~~l~~~~~~k~~~~~kk~~~~ 463 (471)
T PF02430_consen 439 GAVLLALAIYWYYKRLWKTKKKNGD 463 (471)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHhhhhccccCCcc
Confidence 33344444455555 555 444444
No 176
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=43.09 E-value=62 Score=21.86 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHhhhccchhhh
Q 034055 68 SFFLFKLWQKKKR------EEQYARLLKLFEEDDELE 98 (105)
Q Consensus 68 ~~~~yK~WqkkKR------e~q~AR~lKLFEedDdle 98 (105)
...++++..+|++ ++++.++-.|.+.-+-+|
T Consensus 19 p~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~ 55 (75)
T TIGR02976 19 PLWLILHYRSKRKTAASLSTDDQALLQELYAKADRLE 55 (75)
T ss_pred HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3345555554443 456666666665554444
No 177
>PRK08808 general secretion pathway protein J; Validated
Probab=42.90 E-value=51 Score=25.67 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 034055 73 KLWQKKKREEQYARL 87 (105)
Q Consensus 73 K~WqkkKRe~q~AR~ 87 (105)
.+|++.+|-+.++..
T Consensus 34 ~~~~~~~r~~~~~~~ 48 (211)
T PRK08808 34 SASAVSQRGEAIAQR 48 (211)
T ss_pred HHHhhhHHHHHHHHH
Confidence 467676655444433
No 178
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=42.77 E-value=25 Score=22.83 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 034055 73 KLWQKKKREEQYARLLKLFE 92 (105)
Q Consensus 73 K~WqkkKRe~q~AR~lKLFE 92 (105)
.|||||+.|-+.+ =++-|.
T Consensus 7 eyW~~Ra~eA~~~-a~~aY~ 25 (56)
T PF04431_consen 7 EYWQKRAEEARKA-ALAAYV 25 (56)
T ss_pred HHHHHHHHHHHHH-HHHhcC
Confidence 5899887665544 344443
No 179
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=42.76 E-value=25 Score=27.07 Aligned_cols=23 Identities=0% Similarity=0.200 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkK 79 (105)
|.+|+...++.+...|+.||+..
T Consensus 81 IVIg~a~tA~~LaL~~r~y~~~g 103 (163)
T PRK07946 81 IVITMGITAFVLALAYRSYRLTT 103 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455566667777899998765
No 180
>PHA02819 hypothetical protein; Provisional
Probab=42.68 E-value=34 Score=23.63 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 034055 61 LVAVGLFSFFLF 72 (105)
Q Consensus 61 ~va~~~~~~~~y 72 (105)
++++++++++.|
T Consensus 53 l~~~~~~~~~~f 64 (71)
T PHA02819 53 LVTIVFVIIFII 64 (71)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 181
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=42.56 E-value=59 Score=21.76 Aligned_cols=11 Identities=27% Similarity=0.084 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 034055 67 FSFFLFKLWQK 77 (105)
Q Consensus 67 ~~~~~yK~Wqk 77 (105)
+.|++-||..|
T Consensus 14 Gff~ar~~~~k 24 (64)
T PF03672_consen 14 GFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 182
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=42.38 E-value=15 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKKREE 82 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~ 82 (105)
...++|-|||-|||.+
T Consensus 14 ig~G~Yv~~~ark~~k 29 (47)
T PF15055_consen 14 IGAGAYVYAQARKRMK 29 (47)
T ss_pred HHHHHHHHHHHhhccc
Confidence 4556888999999854
No 183
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=41.98 E-value=30 Score=25.74 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkK 79 (105)
++++..|+++||.+.|+
T Consensus 26 ll~~l~~~~~~Y~r~r~ 42 (149)
T PF11694_consen 26 LLLVLIFFFIKYLRNRL 42 (149)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33344455666665554
No 184
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=41.82 E-value=1.2e+02 Score=26.89 Aligned_cols=21 Identities=14% Similarity=-0.016 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~Wqkk 78 (105)
++.++.+++++.++|-.||+-
T Consensus 328 ~~~l~~~~~~g~~~~~~~q~~ 348 (656)
T PRK06975 328 FVVVVLACAAAVGGYALNRKV 348 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556667566653
No 185
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=41.66 E-value=7.2 Score=31.22 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-----cchhhhhhcCC
Q 034055 68 SFFLFKLWQKKKREEQYARLLKLFE-----EDDELEVELGL 103 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q~AR~lKLFE-----edDdle~ELGL 103 (105)
.+.-+..||.|-+.++|- ..=| +|-|.|.|+|+
T Consensus 430 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 467 (476)
T PLN00028 430 AFIHFPQWGGMFFGPSKD---AVEEDYYASEWTEEEKEKGL 467 (476)
T ss_pred HheeccchhhhhcCCCcc---cchhhhhhcccchhhhhccc
Confidence 333456788766655554 2222 34466677765
No 186
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=41.14 E-value=53 Score=22.50 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHhh
Q 034055 70 FLFKLWQKKKRE-EQYARLLKL 90 (105)
Q Consensus 70 ~~yK~WqkkKRe-~q~AR~lKL 90 (105)
..+.-|+.+.+. ++..+|...
T Consensus 27 ~~~~~~~~~~~~~~~a~~l~~~ 48 (143)
T TIGR01708 27 LSLVSHYGTKSLDQVAGRLAAR 48 (143)
T ss_pred HHhhhhhhHHHHHHHHHHHHHH
Confidence 334443444333 333344433
No 187
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.10 E-value=7.6 Score=28.75 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=14.7
Q ss_pred ceeehhHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLF 72 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~y 72 (105)
.+++|+++++++.|.++++.|
T Consensus 2 Kkil~~ilall~~ii~a~~~~ 22 (113)
T COG5294 2 KKILIGILALLLIIIGALFIF 22 (113)
T ss_pred cchHHHHHHHHHHHHhhheEE
Confidence 367777888777777776654
No 188
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.82 E-value=71 Score=31.87 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHhhhhhccccCCCCCCcCCCcccccccccCCCCc---eeehhHHHHHHHHHHHHH---HHHHHHHH
Q 034055 16 ISSICLQFIPAISDDPSSTKKGKQSAAHHTSRGNTGA---KVGIVLLGLVAVGLFSFF---LFKLWQKK 78 (105)
Q Consensus 16 ~~si~lqf~~gls~d~s~sk~~~k~~~h~~s~~~tg~---~v~ii~lg~va~~~~~~~---~yK~Wqkk 78 (105)
.+.+++=++|=-.+||+=+......+.|. ..|..|. .+++.++|+.+.++-.++ ++..|+++
T Consensus 34 AlfL~lALiSYsPsDPSwS~sa~~~~V~N-l~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r 101 (1355)
T PRK10263 34 AVWLMAALLSFNPSDPSWSQTAWHEPIHN-LGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQ 101 (1355)
T ss_pred HHHHHHHHHhCCccCCcccccCccccccc-ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 33444445555567886322222223332 3444553 356667788766554333 45555544
No 189
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=40.31 E-value=47 Score=27.31 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkKRe~q~AR~ 87 (105)
+++.++++++.++-.|..+|.++|.+.++|-
T Consensus 171 ~~~~~~~~~~~g~~~~~~~~~~~~~~a~~~~ 201 (414)
T PF06864_consen 171 ALVVLALAGGYGWWYWQAQQEEARRAAAAAA 201 (414)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445567788889999999887776555443
No 190
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=39.70 E-value=51 Score=26.31 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=19.4
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~A 85 (105)
.+-+.+.++++|+++. .|--|+|-|-|++.-
T Consensus 199 l~Wv~l~iG~iIi~tL-tYvGwRKYrgek~~~ 229 (232)
T PF09577_consen 199 LIWVMLSIGGIIIATL-TYVGWRKYRGEKEKR 229 (232)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3444455666655544 788888887776643
No 191
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.32 E-value=67 Score=27.67 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~q 83 (105)
+++++++.++++++ +|-+|.||+-..+
T Consensus 4 ~~ii~i~ii~i~~~-~~~~~~rr~~~~~ 30 (569)
T PRK04778 4 YLIIAIVVIIIIAY-LAGLILRKRNYKR 30 (569)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444443333333 3346666554443
No 192
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=39.30 E-value=40 Score=20.99 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
+++++.+.-+...+|...+|..|++
T Consensus 15 ~l~v~tigPA~~Al~~~~~~~~~~~ 39 (77)
T PF04854_consen 15 GLPVFTIGPATAALYYVVRKWVRDE 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344445555556666666666555
No 193
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=39.13 E-value=32 Score=27.95 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 66 LFSFFLFKLWQKKKREE 82 (105)
Q Consensus 66 ~~~~~~yK~WqkkKRe~ 82 (105)
+...+.|+.|+|+|+.|
T Consensus 450 ~~~~~~~~~~~~~~~~~ 466 (469)
T PRK11049 450 IALGLGYLFIGKKRAAE 466 (469)
T ss_pred HHHHHHHHHHcccchhh
Confidence 33556788887766654
No 194
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=39.02 E-value=8.1 Score=25.55 Aligned_cols=25 Identities=8% Similarity=0.336 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
++.|++.+++.++..+-.|+++++.
T Consensus 6 ~~~g~~~ll~~v~~~~~~~rr~~~~ 30 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFRRCKYS 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCTT----
T ss_pred HHHHHHHHHHhheeEEEEEeeEcCC
Confidence 4445554444444455556555544
No 195
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=38.87 E-value=60 Score=28.69 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.8
Q ss_pred CceeehhHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~ 74 (105)
.-+++++.+++++..++.|++||+
T Consensus 266 f~~~~~~~Fs~lg~~l~fF~lYKf 289 (420)
T PTZ00473 266 FGKVLVISFSALGGSLSLFILYKF 289 (420)
T ss_pred cceeehhhHHHHHHHHHHHHHHhc
Confidence 457888888999999999999997
No 196
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.66 E-value=61 Score=27.62 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=19.4
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
..|-+++++++.+..|+.|++|..-
T Consensus 172 ~~i~~l~v~~il~~~f~i~~~~~~~ 196 (348)
T KOG4628|consen 172 SLISLLTVVAILVTCFFIYRIRRLI 196 (348)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788889998888888877543
No 197
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=38.64 E-value=42 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.584 Sum_probs=17.2
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
|--++-+++++++-. .+..+.|.+||||+++
T Consensus 123 G~~i~~~v~~~i~Y~-l~~~~~~~~r~~r~~~ 153 (154)
T PF09835_consen 123 GSLILGIVLGIISYF-LVYFLVRKYRKRRRKR 153 (154)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 344444555555444 3444677777777654
No 198
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=38.30 E-value=28 Score=25.51 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=19.8
Q ss_pred eehhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccchhhhhhcCC
Q 034055 54 VGIVLLGLVAVGLFSFFLF-KLWQKKKREEQYARLLKLFEEDDELEVELGL 103 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~y-K~WqkkKRe~q~AR~lKLFEedDdle~ELGL 103 (105)
.++|++|++..+++..+++ -++-.........+=+++.++|.+..+-||-
T Consensus 12 ~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~d~~v~~~LG~ 62 (145)
T PF08294_consen 12 FGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKKDPRVQDLLGE 62 (145)
T ss_dssp --------------------------HHHHHHHHHHHHHHH-HHHHHHT--
T ss_pred eEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhcCHHHHHHhCC
Confidence 4455566554444443333 3566677788899999999999999888874
No 199
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=37.97 E-value=82 Score=21.23 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 034055 79 KREEQYAR 86 (105)
Q Consensus 79 KRe~q~AR 86 (105)
++++.+..
T Consensus 55 r~~ka~~a 62 (108)
T PF07219_consen 55 RRRKAQRA 62 (108)
T ss_pred HHHHHHHH
Confidence 33333333
No 200
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=37.91 E-value=98 Score=26.40 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=22.9
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
++.+|..+.+|.+.+++.+++++..|-+.|.-.+.+
T Consensus 32 ~~~~g~~l~~~aili~la~g~g~y~~~~qq~~~~~~ 67 (390)
T PRK10920 32 KNRTGLVLSAVAIAIALAAGAGLYYHGKQQAQNQTA 67 (390)
T ss_pred CCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 355676655555555555566677888998855543
No 201
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.83 E-value=28 Score=27.97 Aligned_cols=19 Identities=5% Similarity=0.350 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQ 76 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~Wq 76 (105)
..|+++++++.|..|++|+
T Consensus 195 ~~G~i~~~v~~yl~~~wlr 213 (213)
T KOG3251|consen 195 YGGVILTLVIMYLFYRWLR 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3477777777777777774
No 202
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=37.80 E-value=63 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
+++++++-++..+|++++|+|.=+
T Consensus 159 ~~lia~vYa~lt~~~f~~rr~~f~ 182 (283)
T PF02076_consen 159 FSLIAAVYAILTLRRFIRRRKQFR 182 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888999998877644
No 203
>PHA02692 hypothetical protein; Provisional
Probab=37.76 E-value=27 Score=24.06 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=5.5
Q ss_pred cCCCCceeehh
Q 034055 47 RGNTGAKVGIV 57 (105)
Q Consensus 47 ~~~tg~~v~ii 57 (105)
++.+...++|+
T Consensus 41 ~~~~~~~~ii~ 51 (70)
T PHA02692 41 KGVPWTTVFLI 51 (70)
T ss_pred CCcchHHHHHH
Confidence 44444555555
No 204
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=37.75 E-value=40 Score=28.89 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=27.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lK 89 (105)
.|++++++.||+-+..=|+-=.|+|+.-||-.|||
T Consensus 318 AIvvIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~ 352 (353)
T TIGR01477 318 AILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLN 352 (353)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhc
Confidence 34444555667777778999999999999999986
No 205
>PTZ00046 rifin; Provisional
Probab=37.74 E-value=38 Score=28.97 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=27.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lK 89 (105)
.|++++++.||+-+..=|+-=.|+|+.-||-.||+
T Consensus 323 AIvVIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~ 357 (358)
T PTZ00046 323 AIVVIVLIMVIIYLILRYRRKKKMKKKLQYIKLLE 357 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhc
Confidence 34444556677777788999999999999999986
No 206
>PRK08126 hypothetical protein; Provisional
Probab=37.70 E-value=63 Score=27.58 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=29.0
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKL 90 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKL 90 (105)
.++.+++.+.+++++++|+.|+||-..+.++-++++..+
T Consensus 243 ~P~W~~~~~~~l~l~~~y~~~~~~L~~~s~~v~~qi~~L 281 (432)
T PRK08126 243 VPVWATAAVLSLILLGLFGWYKYRLLTRSADVQQRIAAI 281 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 455566666667777889999999888887777666655
No 207
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=37.67 E-value=89 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~q~A 85 (105)
+++++++++|-+||-++-.|.--
T Consensus 4 ~llll~~~~~~~w~~~~~~E~A~ 26 (97)
T PF11743_consen 4 LLLLLALVGWFWWQSRRQRERAL 26 (97)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444555666787665544433
No 208
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=37.62 E-value=52 Score=22.69 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=12.9
Q ss_pred ehhHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~ 74 (105)
..++++++++.++++++|-.
T Consensus 94 ~~~~~~~~~lp~~a~~lY~~ 113 (117)
T TIGR03142 94 LAALVVVLLLPVLALGLYLK 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777754
No 209
>PTZ00087 thrombosponding-related protein; Provisional
Probab=37.54 E-value=45 Score=28.67 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=30.5
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q 83 (105)
+.+...+++||++-+|.||-....+|...-|||-.|.
T Consensus 291 ~~sst~~i~~i~~piv~vi~v~~ily~ify~~k~~ek 327 (340)
T PTZ00087 291 KESSTFKILIILLPIVLIICVMGILYHIFYKKKGAEK 327 (340)
T ss_pred CCCCcceEeeeehhHHHHHHHHHHHHHHhhhccchHH
Confidence 3445579999999999999988899999998887654
No 210
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=37.22 E-value=46 Score=22.05 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=18.6
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
+..+++|++.++++.++++..+.--.+.
T Consensus 2 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~ 29 (148)
T PF12158_consen 2 VFLLLFGIIFLLIGLVLLIGGIFLYWRR 29 (148)
T ss_pred eEhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777666554
No 211
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.72 E-value=34 Score=22.95 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=21.3
Q ss_pred eeehhHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSF------FLFKLWQKKKREEQY 84 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~------~~yK~WqkkKRe~q~ 84 (105)
..-.+|+|++..++++. -.|+-|..+|=.+++
T Consensus 18 ~l~~l~lG~~~~vllLW~aWal~~ayrGWa~~~v~~~~ 55 (65)
T TIGR03758 18 AMNTLILGLVLAVLFLWGAWALLTAYRGWAEGKLRQRA 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCHHH
Confidence 34456778877666654 468999987755444
No 212
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=36.52 E-value=58 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkKR 80 (105)
+.+++++.++++=-++++||+-|.
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~ 29 (116)
T PTZ00100 6 VALTFGGGVLAVRYGYRYLKNQKI 29 (116)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhh
Confidence 346777767777778999995544
No 213
>PRK10772 cell division protein FtsL; Provisional
Probab=36.50 E-value=64 Score=23.21 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=21.1
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhc
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVEL 101 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~EL 101 (105)
++.++++.++.+..++++..+|.-|+- .+.+=++..+-|.+|.|-
T Consensus 24 kl~l~Ll~~vv~SAl~VV~~~h~tR~l----~~ele~l~~e~~~Le~Ew 68 (108)
T PRK10772 24 KLPLCLFIAVIVSAVTVVTTAHHTRLL----TAEREQLVLERDALDIEW 68 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334444444433444444555555542 233334445556666664
No 214
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=36.40 E-value=58 Score=19.73 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKK 79 (105)
Q Consensus 67 ~~~~~yK~WqkkK 79 (105)
+++..+-||++-|
T Consensus 11 At~lI~dyfr~~K 23 (35)
T PF08763_consen 11 ATLLIQDYFRQFK 23 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666665433
No 215
>PF15102 TMEM154: TMEM154 protein family
Probab=36.23 E-value=4.7 Score=30.68 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=3.4
Q ss_pred eehhHHH
Q 034055 54 VGIVLLG 60 (105)
Q Consensus 54 v~ii~lg 60 (105)
+++|++.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 5555543
No 216
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=36.13 E-value=55 Score=25.21 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=11.5
Q ss_pred CCCceeehhHH-HHHHHHHH
Q 034055 49 NTGAKVGIVLL-GLVAVGLF 67 (105)
Q Consensus 49 ~tg~~v~ii~l-g~va~~~~ 67 (105)
-+|.+|++|+. |++.++++
T Consensus 8 lsGv~vvlv~a~g~l~~vll 27 (186)
T PF07406_consen 8 LSGVNVVLVIAYGSLVFVLL 27 (186)
T ss_pred ccceeeehhhHHHHHHHHHH
Confidence 37888887766 44444333
No 217
>KOG4764 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.09 E-value=13 Score=25.70 Aligned_cols=12 Identities=67% Similarity=0.911 Sum_probs=9.9
Q ss_pred Hhhhccchhhhh
Q 034055 88 LKLFEEDDELEV 99 (105)
Q Consensus 88 lKLFEedDdle~ 99 (105)
++||||||+.|+
T Consensus 10 ~~~lEeDDEFEe 21 (70)
T KOG4764|consen 10 LGLLEEDDEFEE 21 (70)
T ss_pred ccccccchhhhh
Confidence 678999998874
No 218
>PF04917 Shufflon_N: Bacterial shufflon protein, N-terminal constant region; InterPro: IPR007001 This domain represents the high-similarity N-terminal constant region shared by shufflon proteins. Shufflon proteins are created as a result of a clustered inversion region. The proteins retain a constant N-terminal domain, with different C-terminal domains.
Probab=36.07 E-value=86 Score=26.32 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=22.3
Q ss_pred ehhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 55 GIVLLGLVAVGLF-SFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 55 ~ii~lg~va~~~~-~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
+++.|+|++++++ .+-.++-|++.++.+..|+=++-|.+
T Consensus 13 ~~~aL~I~~~~~~~~~~~~~~~~~~~~~~~aA~q~~~v~~ 52 (356)
T PF04917_consen 13 LIIALAILALMAPGGAQWMSDYLEDQQWQVAAQQQSQVGE 52 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333 33466677777777777776666543
No 219
>PF00662 Oxidored_q1_N: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; InterPro: IPR001516 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This domain represents an N-terminal extension of IPR001750 from INTERPRO. It contains NADH-Ubiquinone chain 5 and eubacterial chain L; these are found in the NADH:ubiquinone oxidoreductase (complex I) which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_L.
Probab=35.53 E-value=60 Score=19.93 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLF 91 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLF 91 (105)
+.+.+++++..++..|..|==+ +|..+.||..+.
T Consensus 27 ~f~~~v~~Is~~V~~yS~~YM~-~d~~~~rF~~~l 60 (62)
T PF00662_consen 27 LFLLLVLFISSLVHIYSIGYMS-HDPNYNRFFSYL 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-S-S-HHHHHHHH
T ss_pred HHHHHHHHhheeeeeccccccc-cCCCcchhhhee
Confidence 3456677777777788777544 677777887653
No 220
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=35.21 E-value=38 Score=29.46 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 034055 72 FKLWQKK 78 (105)
Q Consensus 72 yK~Wqkk 78 (105)
+-+|++|
T Consensus 649 ~~~~~~~ 655 (968)
T PLN00113 649 FVFIRGR 655 (968)
T ss_pred HHHHHhh
Confidence 3344443
No 221
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=34.98 E-value=41 Score=23.98 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccch
Q 034055 71 LFKLWQKKKREEQYARLLKLFEEDD 95 (105)
Q Consensus 71 ~yK~WqkkKRe~q~AR~lKLFEedD 95 (105)
.|++=++-++.++.+-|.+=||||=
T Consensus 92 FYrFQ~RE~kk~~l~eLrkkFeeDK 116 (131)
T PF12923_consen 92 FYRFQIREKKKNELAELRKKFEEDK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777788888999999999984
No 222
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=34.90 E-value=80 Score=22.39 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~q~AR 86 (105)
.++.+.+-.|-+|.+++=+++++|
T Consensus 83 G~iF~~~W~~~l~lg~~i~~~~~~ 106 (107)
T PF14017_consen 83 GVIFAAVWWYALYLGRRIDRRMAR 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555667888888888877775
No 223
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=34.86 E-value=51 Score=26.18 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=20.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~ 84 (105)
..+++|+.++..++-..++++++|++.+++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (288)
T TIGR02854 128 KFILIGFPILYYFVKRRMDAIRDRAILDKQ 157 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhce
Confidence 455666666666666778888888776653
No 224
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.79 E-value=13 Score=29.39 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHhhhccchhhh
Q 034055 65 GLFSFFLFKLWQK-----KKREEQYARLLKLFEEDDELE 98 (105)
Q Consensus 65 ~~~~~~~yK~Wqk-----kKRe~q~AR~lKLFEedDdle 98 (105)
+++.+++|-||+. +|.|+++.-+.+|=.....+|
T Consensus 81 vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~ 119 (181)
T KOG3335|consen 81 VGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLE 119 (181)
T ss_pred ecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4455667888863 455566666666655544444
No 225
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=34.79 E-value=13 Score=30.61 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHhh
Q 034055 82 EQYARLLKL 90 (105)
Q Consensus 82 ~q~AR~lKL 90 (105)
|+|+-|++=
T Consensus 181 ee~~~f~~K 189 (290)
T PF05454_consen 181 EEQKTFISK 189 (290)
T ss_dssp ---------
T ss_pred chhHHHHhc
Confidence 567777763
No 226
>PRK07033 hypothetical protein; Provisional
Probab=34.44 E-value=70 Score=27.13 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=28.6
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKL 90 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKL 90 (105)
++.+++.+.+++++++++.|+||-..+-+.-.+++..|
T Consensus 229 P~W~~~~~~~~ll~~~y~~~~~~L~~~a~~v~~~i~~l 266 (427)
T PRK07033 229 PLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYAL 266 (427)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 34445555566777788999999999999888777666
No 227
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=34.34 E-value=40 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=15.2
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wqk 77 (105)
.++-++|++.+++...++|=+|.|
T Consensus 18 ~iv~~~al~~l~~~isGl~l~~p~ 41 (88)
T PF13703_consen 18 WIVGILALLLLLLLISGLYLWWPR 41 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344455666667777777777753
No 228
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=34.17 E-value=74 Score=18.62 Aligned_cols=14 Identities=7% Similarity=-0.320 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 034055 71 LFKLWQKKKREEQY 84 (105)
Q Consensus 71 ~yK~WqkkKRe~q~ 84 (105)
-+-.+...|++-|.
T Consensus 23 d~~~~~~~r~~lq~ 36 (48)
T PF13400_consen 23 DVGRAYLARTRLQN 36 (48)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 229
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=34.07 E-value=1.5e+02 Score=20.95 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH-H
Q 034055 60 GLVAVGLFSFFLFKL-W 75 (105)
Q Consensus 60 g~va~~~~~~~~yK~-W 75 (105)
.+++++++.++++++ |
T Consensus 7 ~~i~f~i~l~~l~~~~~ 23 (159)
T PRK09173 7 AFVGLVLFLALVVYLKV 23 (159)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 445555555555555 6
No 230
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=33.96 E-value=1.1e+02 Score=25.17 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=13.9
Q ss_pred CCCCceeehhHHHHHHHHHHHHHHHHHHHH
Q 034055 48 GNTGAKVGIVLLGLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 48 ~~tg~~v~ii~lg~va~~~~~~~~yK~Wqk 77 (105)
++.|..+.++.+-+++.++++++.|-.+|-
T Consensus 26 ~~~~~~l~~lalll~~alg~~~~~~~~~q~ 55 (372)
T PF04375_consen 26 SSGGSGLALLALLLALALGAGGWYWQQQQL 55 (372)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333334445666766653
No 231
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=33.80 E-value=44 Score=25.36 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 034055 60 GLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ 99 (105)
-+|.+++.+|+.|-.-|-.-+-.|-.| +|-.|+-|+|+
T Consensus 71 LivSLaLVsFvIFLiiQTgnkMddvSr--RL~aEgKdIde 108 (128)
T PF15145_consen 71 LIVSLALVSFVIFLIIQTGNKMDDVSR--RLTAEGKDIDE 108 (128)
T ss_pred HHHHHHHHHHHHHheeeccchHHHHHH--HHHhccCCHHH
Confidence 345667778888888888777777666 34467777664
No 232
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.75 E-value=1.7e+02 Score=20.67 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHhhhhhccccCCCCCCcCCCcccccccccCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 8 RSFQFLLLISSICLQFIPAISDDPSSTKKGKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 8 ~~~~~ll~~~si~lqf~~gls~d~s~sk~~~k~~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~A 85 (105)
|+|.|++.++.+..-|+..=..-+.. ..=|+.+ -.++-.++++.|...+.+.+...=+..+|.+.+|
T Consensus 2 GS~~Fi~~~~~~~~~Wi~~N~~~~~~----~~fDpyP-------FilLnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra 68 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWILLNILAPPR----PAFDPYP-------FILLNLVLSLEAAYQAPLILMSQNRQAARDRLRA 68 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcccc----CCCCCcc-------HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 56888877776666555431111100 0011111 1122233466688888888877655555544443
No 233
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=33.71 E-value=1.5e+02 Score=19.82 Aligned_cols=14 Identities=36% Similarity=0.797 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhccc
Q 034055 81 EEQYARLLKLFEED 94 (105)
Q Consensus 81 e~q~AR~lKLFEed 94 (105)
||.-.|.+.|.|.|
T Consensus 45 eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 45 EQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHHccC
Confidence 55667899998864
No 234
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=33.63 E-value=44 Score=27.12 Aligned_cols=49 Identities=31% Similarity=0.238 Sum_probs=35.1
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhhhccchhhhh
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQY----------------ARLLKLFEEDDELEV 99 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~----------------AR~lKLFEedDdle~ 99 (105)
.|..++-.+||- |++.+++=+||.|++=||.=.. .-+-|+|.-|||+..
T Consensus 59 ~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~ 123 (230)
T COG1346 59 KGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELIL 123 (230)
T ss_pred cccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 456677777776 7778888899999998886543 235577777776654
No 235
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=33.52 E-value=39 Score=26.09 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 69 FFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 69 ~~~yK~WqkkKRe~q~AR~ 87 (105)
--+|--|||.||+.|++|+
T Consensus 120 ~~Af~~~kr~k~~~~~~~l 138 (182)
T PF14719_consen 120 RSAFQEFKRDKRSRQNARL 138 (182)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3468889999999999998
No 236
>COG1289 Predicted membrane protein [Function unknown]
Probab=33.50 E-value=68 Score=27.88 Aligned_cols=69 Identities=14% Similarity=0.283 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCcCCCcccccccccCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034055 11 QFLLLISSICLQFIPAISDDPSSTKKGKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKL 90 (105)
Q Consensus 11 ~~ll~~~si~lqf~~gls~d~s~sk~~~k~~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKL 90 (105)
.+-.++.++++-|..++.+.+. ....-..++=.++|.+..++++++++-.|+.+.-+..-+|.+..
T Consensus 452 ~~a~~~i~l~v~~~~~l~~~~~--------------~~~~~~r~~d~~iG~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~ 517 (674)
T COG1289 452 RLATLGITLLVLFLVGLLGSNG--------------PDYDLPRFLDTLLGSLIALALAFLVWPLWRPRRLRRALRRALRA 517 (674)
T ss_pred hHHHHHHHHHHHHHHHHcccch--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 3345556666667777655321 11122335556677777778888899999999999999988876
Q ss_pred hcc
Q 034055 91 FEE 93 (105)
Q Consensus 91 FEe 93 (105)
..+
T Consensus 518 ~~~ 520 (674)
T COG1289 518 LRR 520 (674)
T ss_pred HHH
Confidence 554
No 237
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=33.47 E-value=1.3e+02 Score=22.27 Aligned_cols=14 Identities=36% Similarity=0.245 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 034055 76 QKKKREEQYARLLK 89 (105)
Q Consensus 76 qkkKRe~q~AR~lK 89 (105)
|+|+.|+++|+--+
T Consensus 42 ~~kq~eke~ae~e~ 55 (140)
T PF07543_consen 42 QKKQLEKEKAEREA 55 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555556666554
No 238
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=33.45 E-value=42 Score=28.19 Aligned_cols=44 Identities=30% Similarity=0.283 Sum_probs=20.8
Q ss_pred eehhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcC
Q 034055 54 VGIVLLGLVAV--GLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVELG 102 (105)
Q Consensus 54 v~ii~lg~va~--~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ELG 102 (105)
++-.+.|+.+| ++++-.+.-+..|| +.|+|.-+|+-|-+-.+||
T Consensus 72 ~v~~~~G~~~v~liLgl~ig~p~~krk-----ek~~iee~e~~~q~~e~~~ 117 (279)
T PF07271_consen 72 VVGGSAGLLAVALILGLAIGIPIYKRK-----EKRMIEEKEEHEQLAEQLG 117 (279)
T ss_pred eccchhhHHHHHHHHHHhhcchhhhhh-----HHHHHHHHHHHHHHHHHHH
Confidence 34556665433 33333333333222 4566666666555544443
No 239
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.37 E-value=78 Score=28.92 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 034055 72 FKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 72 yK~WqkkKRe~q~AR~lKLFEe 93 (105)
|-|-|+|+-.|--++++|=.|+
T Consensus 232 ~ay~Qnk~akehv~km~kdle~ 253 (575)
T KOG4403|consen 232 FAYRQNKKAKEHVNKMMKDLEG 253 (575)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 4456888888888888876654
No 240
>PRK01770 sec-independent translocase; Provisional
Probab=32.96 E-value=78 Score=24.47 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.5
Q ss_pred HHHHHH
Q 034055 74 LWQKKK 79 (105)
Q Consensus 74 ~WqkkK 79 (105)
.|-|+=
T Consensus 34 ~~i~~~ 39 (171)
T PRK01770 34 GWIRAL 39 (171)
T ss_pred HHHHHH
Confidence 344443
No 241
>PRK09458 pspB phage shock protein B; Provisional
Probab=32.94 E-value=57 Score=22.50 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=19.2
Q ss_pred HHHHHHHHHH-----HHHHHHHHhhhccchhhhh
Q 034055 71 LFKLWQKKKR-----EEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 71 ~yK~WqkkKR-----e~q~AR~lKLFEedDdle~ 99 (105)
..-|..|+|. ++++.|+-.|.+.-+-+++
T Consensus 23 ~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A~rm~~ 56 (75)
T PRK09458 23 WLHYRSKRQGSQGLSQEEQQRLAQLTEKAERMRE 56 (75)
T ss_pred HHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445455543 6788889888887766654
No 242
>PF13994 PgaD: PgaD-like protein
Probab=32.64 E-value=41 Score=23.93 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=21.8
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~ 84 (105)
...-+.++++.++++.+-.-|..|+-+++++.+
T Consensus 64 l~~y~~i~~~~a~~Li~Wa~yn~~Rf~~~~rr~ 96 (138)
T PF13994_consen 64 LQIYLLIALVNAVILILWAKYNRLRFRGRRRRR 96 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 334444456667777777888888777766654
No 243
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=32.60 E-value=34 Score=22.18 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=19.8
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKR-EEQYARLLKLFE 92 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKR-e~q~AR~lKLFE 92 (105)
.|.++|.+|=|++||-.---. |.++.++.. |.|-++.-+-++
T Consensus 16 iGVt~mAiLSG~gaVstpy~~-~~~~~~~v~~~~~i~~~~~~l~ 58 (72)
T PF12537_consen 16 IGVTLMAILSGFGAVSTPYYY-FSYFRRPVSRESDINNAERRLW 58 (72)
T ss_pred HHHHHHHHHhhhhHHccHHHH-HHHHHhcCChHHHHHHHHHHHH
Confidence 345555555566655443222 223333333 666555555444
No 244
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=32.50 E-value=20 Score=23.40 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=13.1
Q ss_pred ehhHHHHHHHHHHHHHHHHH-------HHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKL-------WQKKKR 80 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~-------WqkkKR 80 (105)
+++++|+.++..+.+..+.. |-|++|
T Consensus 9 L~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~ 41 (73)
T PF06522_consen 9 LFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR 41 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 44555554444444444444 556666
No 245
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=32.45 E-value=1.6e+02 Score=22.45 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHhhhhhcccc
Q 034055 9 SFQFLLLISSICLQFIPAIS 28 (105)
Q Consensus 9 ~~~~ll~~~si~lqf~~gls 28 (105)
+|..+++.+.+-+...+.++
T Consensus 36 lw~~~ll~lliP~~~~~~~~ 55 (299)
T PF05569_consen 36 LWLLVLLRLLIPFIPFSPLS 55 (299)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 35555555555555533433
No 246
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=32.43 E-value=34 Score=21.47 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=14.3
Q ss_pred eehhHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFK 73 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK 73 (105)
++++++.+.+++++.+.+|-
T Consensus 2 ~~V~lL~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 2 LLVLLLAILALAIGLMIGYG 21 (47)
T ss_pred EeHHHHHHHHHHHHHHeeee
Confidence 34556677888888887774
No 247
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=32.42 E-value=1e+02 Score=21.69 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=13.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhccch
Q 034055 67 FSFFLFKLWQ-KKKREEQYARLLKLFEEDD 95 (105)
Q Consensus 67 ~~~~~yK~Wq-kkKRe~q~AR~lKLFEedD 95 (105)
+++|.|-.|| .+||++++..++.=..-+|
T Consensus 19 ~~ifyFli~RPQrKr~K~~~~ml~sL~kGD 48 (97)
T COG1862 19 FAIFYFLIIRPQRKRMKEHQELLNSLKKGD 48 (97)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhccCCC
Confidence 3334443443 3444455555555444444
No 248
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=32.21 E-value=56 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~q 83 (105)
..+......++.|+||+++..
T Consensus 133 ~~~~~~~~~i~~~~~~~~~a~ 153 (205)
T PF07695_consen 133 IILLILIIIIYAWRKGNRPAR 153 (205)
T ss_pred HHHHHHHHHHHHHHcCCccHH
Confidence 444455566777766666543
No 249
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=32.03 E-value=51 Score=20.35 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKR 80 (105)
+++..++...+.+.|--+|-+
T Consensus 18 vI~~~igm~~~~~~~F~~k~~ 38 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRYFIRKMK 38 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333444333333
No 250
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=31.93 E-value=28 Score=27.10 Aligned_cols=24 Identities=46% Similarity=0.448 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccch
Q 034055 70 FLFKLWQKKKREEQYARLLKLFEEDD 95 (105)
Q Consensus 70 ~~yK~WqkkKRe~q~AR~lKLFEedD 95 (105)
.+.-||||-.|.|| --+||-..||
T Consensus 122 AG~~Yw~kA~R~E~--v~lkl~~~~~ 145 (173)
T PF12046_consen 122 AGIFYWQKAGRPEQ--VELKLESADD 145 (173)
T ss_pred hhhhhhhcCCCcce--EEEEEEEcCC
Confidence 45679999999998 3356655554
No 251
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=31.88 E-value=49 Score=27.74 Aligned_cols=29 Identities=21% Similarity=0.623 Sum_probs=17.8
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q 83 (105)
|.+.++|++|++.+++ ++|-.|+|+ |+.+
T Consensus 4 ~l~~~livig~i~i~~---il~~~~~r~-r~~~ 32 (293)
T PRK00269 4 GLREWLIVIGIIVIAG---ILFDGWRRM-RGGK 32 (293)
T ss_pred chhhHHHHHHHHHHHH---HHHHHHHHH-hccc
Confidence 4555666666654443 366789998 5544
No 252
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=31.72 E-value=57 Score=28.73 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034055 73 KLWQKKKREEQYARLLK 89 (105)
Q Consensus 73 K~WqkkKRe~q~AR~lK 89 (105)
-+|-.|++|+|.+|+-+
T Consensus 256 ~~~e~k~~e~q~~ri~R 272 (453)
T PLN03098 256 FLWENKKEEEQMSQITR 272 (453)
T ss_pred HHHHhcccHHHHHHHHh
Confidence 36889999999999744
No 253
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=31.69 E-value=77 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=14.2
Q ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
.+++++++.++.+++++...+.++++..
T Consensus 18 ~kl~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (542)
T PRK11086 18 TTVTLMVSAVVFSVLLVVHLLYFSQISR 45 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444444444444555555665554
No 254
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=31.58 E-value=1e+02 Score=22.02 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 034055 71 LFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 71 ~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
...+|+++|++++-+++-++.++
T Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~ 33 (230)
T PF00122_consen 11 IIEIWQEYRSKKQLKKLNNLNPQ 33 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 45778888888777777665544
No 255
>PRK10574 putative major pilin subunit; Provisional
Probab=31.38 E-value=1.3e+02 Score=22.06 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKKREEQ 83 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q 83 (105)
++-.|.-|++|-+.++
T Consensus 26 aiP~~~~~~~~a~~~~ 41 (146)
T PRK10574 26 GIPAYQNYLQKAALTD 41 (146)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555444333
No 256
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.26 E-value=26 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=13.0
Q ss_pred CCceeehhH---HHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVL---LGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 50 tg~~v~ii~---lg~va~~~~~~~~yK~Wqkk 78 (105)
.|.-|+|-+ ||++++++.+-++.-+-+||
T Consensus 226 ~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 226 RGFVVLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred ceEEEEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455454432 24455444444444444444
No 257
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=30.92 E-value=35 Score=23.86 Aligned_cols=20 Identities=25% Similarity=0.087 Sum_probs=11.6
Q ss_pred eeehhHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFFLF 72 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~y 72 (105)
|++|.+++++.+++++++.+
T Consensus 3 K~li~li~~ivv~~~~~~~~ 22 (114)
T TIGR01655 3 KGLAILLALIVVITIVGIEI 22 (114)
T ss_pred eehHHHHHHHHhHHHhhhee
Confidence 56677777665555544333
No 258
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=30.47 E-value=1.1e+02 Score=20.77 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred cccccccCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 41 AAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 41 ~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~ 84 (105)
.+|.+-++..=.|-|+|=++++. +.+++.=.-.|+..+|++..
T Consensus 6 vah~~~~gPsvvKEI~iG~~LGL-~AG~~WKmhHWn~qrkt~~f 48 (63)
T PLN03155 6 IAHATLKGPSVVKELCIGLTLGL-AAGGLWKMHHWNEQRKTRSF 48 (63)
T ss_pred eeeeeccCCchhhhHHHHhHHHH-hhhhHHHHhhhhhHHHHHHH
Confidence 34544444433444444443333 33444445567766666553
No 259
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=30.16 E-value=22 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=0.4
Q ss_pred eehhHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLV--AVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 54 v~ii~lg~v--a~~~~~~~~yK~WqkkKRe~q~ 84 (105)
..+|..|++ +++++.+.++-+|+|-.|+|.-
T Consensus 78 ~~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 78 LWPILGSALSVVLVLALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp S--------------------------------
T ss_pred ehhhhhhHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 344444443 2334455577788888877753
No 260
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=30.15 E-value=68 Score=24.72 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKR 80 (105)
++++.+++...++||-||+.++
T Consensus 33 ~~~Gg~AalG~lA~~ayq~~q~ 54 (188)
T PF04391_consen 33 LKYGGLAALGGLAYKAYQNWQQ 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444555556666666643
No 261
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=30.13 E-value=17 Score=31.80 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred eeehhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFF-LFKLWQKKKREEQYARL 87 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~-~yK~WqkkKRe~q~AR~ 87 (105)
+|--||+|++.|.+.+++ +|=.- ||+|.+-|++|
T Consensus 11 TITgIcvaLlVVGi~Cvv~aYCKT-KKQRkklh~hL 45 (404)
T PF02158_consen 11 TITGICVALLVVGIVCVVDAYCKT-KKQRKKLHEHL 45 (404)
T ss_dssp ------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH
Confidence 344466666666666665 55332 34455445443
No 262
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=30.12 E-value=66 Score=19.84 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Q 034055 64 VGLFSFFLFKLWQKKKRE-EQYAR 86 (105)
Q Consensus 64 ~~~~~~~~yK~WqkkKRe-~q~AR 86 (105)
++..+++.|-||.+.|+. ++.||
T Consensus 21 ~~Figiv~wa~~p~~k~~f~eaa~ 44 (48)
T cd01324 21 LFFLGVVVWAFRPGRKKAFDEAAN 44 (48)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHc
Confidence 334456688899555544 44443
No 263
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.80 E-value=1.4e+02 Score=25.87 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=22.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
+|+++.++.++.++.+.|+-=..|+=.+=..|-.+|+.-
T Consensus 2 iI~iivi~l~~~~~~~~~rk~~~k~i~~Le~~k~~l~~~ 40 (560)
T PF06160_consen 2 IIGIIVIVLIIYIIGYIYRKRYYKEIDELEERKNELMNL 40 (560)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444554444444555556665666666666666666543
No 264
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.47 E-value=29 Score=24.06 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.3
Q ss_pred HHHHHHhhhccchhhhhh
Q 034055 83 QYARLLKLFEEDDELEVE 100 (105)
Q Consensus 83 q~AR~lKLFEedDdle~E 100 (105)
.-|+|-+|||+-++++++
T Consensus 15 ~dahF~rLfd~hn~LDd~ 32 (72)
T COG2841 15 NDAHFARLFDKHNELDDR 32 (72)
T ss_pred cchHHHHHHHHHhHHHHH
Confidence 458999999999888875
No 265
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.43 E-value=61 Score=23.97 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=8.7
Q ss_pred ehhHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFL 71 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~ 71 (105)
+.+|+++++++++++++
T Consensus 94 m~~il~~v~~i~l~iii 110 (116)
T KOG0860|consen 94 MRIILGLVIIILLVVII 110 (116)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556665555544433
No 266
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.38 E-value=2.1e+02 Score=20.85 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=15.4
Q ss_pred HHHHHHHHHHH-HHH---HHHHHHHHHHHhhhccchh
Q 034055 64 VGLFSFFLFKL-WQK---KKREEQYARLLKLFEEDDE 96 (105)
Q Consensus 64 ~~~~~~~~yK~-Wqk---kKRe~q~AR~lKLFEedDd 96 (105)
++++.+++++| |.+ +-=++.+.+.-+-.++-++
T Consensus 36 flil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~ 72 (184)
T PRK13455 36 FLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARA 72 (184)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444 543 2345555566555554443
No 267
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=29.18 E-value=97 Score=18.05 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.4
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
.+..++|+..++.+.+-++-++++|+
T Consensus 23 ~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 23 ALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44566777777777777788888444
No 268
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=28.99 E-value=42 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=12.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
..+++++++...+.-..+++|+++++.
T Consensus 127 ~~l~~~~~~~~~~~~~~~~~i~~~~~~ 153 (293)
T PF03419_consen 127 LFLLIGFIIAYLLLKRLWKYIKRRRIK 153 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444333333445555554443
No 269
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=28.50 E-value=79 Score=31.17 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=22.5
Q ss_pred eeehhHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 034055 53 KVGIVLLGLVA---VGLFSFFLFKLWQ-KKKREEQYARLLKLF 91 (105)
Q Consensus 53 ~v~ii~lg~va---~~~~~~~~yK~Wq-kkKRe~q~AR~lKLF 91 (105)
+.+++++|.+. ++++.|++|-+|| .+.+.+-+.|+|.+=
T Consensus 629 ~~~~~viG~~Ll~~~~~~~~~~~~~~r~q~~~k~~~rr~lq~~ 671 (1177)
T KOG1025|consen 629 ATAIAVIGGLLLAFFVFLGFSLYMCRRMQIIIKRTMRRLLQLE 671 (1177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHhc
Confidence 45555555332 2333555566666 556667777888764
No 270
>PRK14764 lipoprotein signal peptidase; Provisional
Probab=28.48 E-value=1.6e+02 Score=23.23 Aligned_cols=34 Identities=21% Similarity=0.086 Sum_probs=16.1
Q ss_pred ccCCCCceeehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 46 SRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 46 s~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
+....+.+.+++++.+.++++++=-.-|+|-...
T Consensus 30 ~~~~~~~~r~~~~~~i~~~ii~lDQ~tK~~~~~~ 63 (209)
T PRK14764 30 APRPPGRRRLRLLLSVAAVVLALDIVTKVLAVAL 63 (209)
T ss_pred ccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555444444444434555555433
No 271
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=28.43 E-value=42 Score=26.35 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~q~ 84 (105)
.+++++++.+-.|.|+.|+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~r~~~~ 258 (511)
T PF09972_consen 237 LGILLLLIFLIIWRKYGRDPKK 258 (511)
T ss_pred HHHHHHHHHHHHhhhccccccc
Confidence 3334444566677777776543
No 272
>PRK11380 hypothetical protein; Provisional
Probab=28.22 E-value=77 Score=27.36 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034055 61 LVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 61 ~va~~~~~~~~yK~WqkkKRe~q 83 (105)
+.++++..+.+|..-.|.||||+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~eq~ 102 (353)
T PRK11380 80 LYLLIMLGLIVRAGFKKAKKEQL 102 (353)
T ss_pred HHHHHHHHHHHHHHHccchHHHH
Confidence 33555555556666657777764
No 273
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=28.19 E-value=57 Score=21.61 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
+=.+|.+...+......|.|+||
T Consensus 111 ~n~~G~~lG~~l~~~~~~~~~r~ 133 (133)
T PF04892_consen 111 ANTLGALLGYLLYRLIRKRWQRK 133 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 33445444444445555666655
No 274
>PF15392 Joubert: Joubert syndrome-associated
Probab=28.16 E-value=59 Score=27.91 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 034055 72 FKLWQKKKREEQYARLLKLFEED 94 (105)
Q Consensus 72 yK~WqkkKRe~q~AR~lKLFEed 94 (105)
.+-|-||||.|+.|-.|+-.+|-
T Consensus 59 Iq~WMkRKrkERmaEYl~qlaEk 81 (329)
T PF15392_consen 59 IQAWMKRKRKERMAEYLKQLAEK 81 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999877763
No 275
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.08 E-value=1.6e+02 Score=20.23 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=11.4
Q ss_pred HHHHHHH-HHHHHHHHHhh
Q 034055 73 KLWQKKK-REEQYARLLKL 90 (105)
Q Consensus 73 K~WqkkK-Re~q~AR~lKL 90 (105)
+-|.++| .-++..+.++.
T Consensus 29 ~~~l~~k~~~e~~~~~~~~ 47 (108)
T PF09682_consen 29 IKYLKKKAGGEKLVKILEI 47 (108)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 4477777 56666666653
No 276
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=27.76 E-value=28 Score=24.74 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 67 FSFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
+-+.+=++|+ +--++||++|.++|.+
T Consensus 44 ar~~LG~~w~-~~s~~q~~~F~~~f~~ 69 (170)
T PF05494_consen 44 ARRVLGRYWR-KASPAQRQRFVEAFKQ 69 (170)
T ss_dssp HHHHHGGGTT-TS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhHh-hCCHHHHHHHHHHHHH
Confidence 4455667796 5567778999999974
No 277
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.72 E-value=83 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhhhccccCCCC
Q 034055 11 QFLLLISSICLQFIPAISDDPS 32 (105)
Q Consensus 11 ~~ll~~~si~lqf~~gls~d~s 32 (105)
-.+|.++.+.|.|+|.+++=+.
T Consensus 345 nllL~l~~vlLv~vSt~~~~~~ 366 (395)
T PF10267_consen 345 NLLLTLLTVLLVFVSTVANCPL 366 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc
Confidence 3568888999999999888773
No 278
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=27.72 E-value=38 Score=22.69 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcC
Q 034055 67 FSFFLFKLWQKKKREEQYARLLKLFEEDDELEVELG 102 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ELG 102 (105)
++++.|.....++.-+-+..-|+-.+.+...-..||
T Consensus 11 ~~~~~~~~~~~~~~s~~y~~al~~l~~~~~v~~~LG 46 (116)
T PF08695_consen 11 GVFLFYAINSEKKSSEYYKEALEQLRSNPEVVEALG 46 (116)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHcC
Confidence 344455555566666666666777777666666666
No 279
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.69 E-value=89 Score=21.58 Aligned_cols=16 Identities=25% Similarity=0.000 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLF 72 (105)
Q Consensus 57 i~lg~va~~~~~~~~y 72 (105)
|++.+++++++.+++|
T Consensus 7 il~ivl~ll~G~~~G~ 22 (71)
T COG3763 7 ILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 280
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=27.65 E-value=1.1e+02 Score=23.09 Aligned_cols=25 Identities=4% Similarity=-0.010 Sum_probs=10.4
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~W 75 (105)
+.|++++++.++++++++++.+-+|
T Consensus 5 ~~kL~l~~~~l~~l~~~~~~~~~~~ 29 (457)
T TIGR01386 5 TLRLALLFAAVTALVFALSGFMLYS 29 (457)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333344444
No 281
>TIGR01947 rnfG electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=27.55 E-value=2e+02 Score=21.31 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhccc
Q 034055 77 KKKREEQYARLLKLFEED 94 (105)
Q Consensus 77 kkKRe~q~AR~lKLFEed 94 (105)
+.++++.++.+.++|.+.
T Consensus 28 ~~~~~~~~~al~~vlp~~ 45 (186)
T TIGR01947 28 EAEAKQQLEALKQVLPQG 45 (186)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 344555556688999873
No 282
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=27.38 E-value=2.8e+02 Score=21.38 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=20.5
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
|..+.....|++++....+..|.|-|--||
T Consensus 56 ~~gl~~a~~gl~~l~~si~~~fry~Rlar~ 85 (183)
T PF12263_consen 56 GIGLFLAICGLVALFFSIFWSFRYTRLARR 85 (183)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666888888788888887664443
No 283
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.20 E-value=29 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.460 Sum_probs=16.5
Q ss_pred eehhHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLF------SFFLFKLWQKKKREE 82 (105)
Q Consensus 54 v~ii~lg~va~~~~------~~~~yK~WqkkKRe~ 82 (105)
.-.+++|+++++++ ..-.||-|..+|-.+
T Consensus 20 l~~li~g~~~avllLW~aWa~~~~y~Gw~~~~v~~ 54 (76)
T PF11660_consen 20 LSLLILGILFAVLLLWAAWALWSAYRGWANGKVDF 54 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 33455555544444 345689998865433
No 284
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=26.95 E-value=52 Score=23.54 Aligned_cols=16 Identities=50% Similarity=0.509 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhhc
Q 034055 10 FQFLLLISSICLQFIP 25 (105)
Q Consensus 10 ~~~ll~~~si~lqf~~ 25 (105)
|.|||+..||-||--+
T Consensus 7 WlFLlFifsillQsgt 22 (87)
T PF07436_consen 7 WLFLLFIFSILLQSGT 22 (87)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999988433
No 285
>PRK00404 tatB sec-independent translocase; Provisional
Probab=26.93 E-value=79 Score=23.93 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=4.7
Q ss_pred hhhhhhcCC
Q 034055 95 DELEVELGL 103 (105)
Q Consensus 95 Ddle~ELGL 103 (105)
+|+++|+|+
T Consensus 48 ~ei~~E~~~ 56 (141)
T PRK00404 48 QEVEREIGA 56 (141)
T ss_pred HHHHHhhCH
Confidence 455555554
No 286
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=26.90 E-value=1.6e+02 Score=19.12 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=19.5
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~A 85 (105)
++..+++++.....++++++-|+.+--|+=.+
T Consensus 33 ~~~~l~A~vis~~lS~~ll~~~R~~~~~~ia~ 64 (69)
T PF14012_consen 33 LVAALLALVISMPLSYVLLRRLRDRASADIAA 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667788887776655444333
No 287
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=26.84 E-value=73 Score=18.51 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=11.4
Q ss_pred eehhHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFK 73 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK 73 (105)
-.|.+.+++.++-++|+++|
T Consensus 8 a~i~ly~~l~~~s~~~Li~k 27 (29)
T TIGR03063 8 AQIGLYAVLFLGSGLFLIRK 27 (29)
T ss_pred hhHHHHHHHHHHHHHHHhhc
Confidence 34566666666655555543
No 288
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=26.74 E-value=58 Score=22.17 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKKRE 81 (105)
Q Consensus 68 ~~~~yK~WqkkKRe 81 (105)
.+-..+-||||.||
T Consensus 53 v~k~v~~~kr~~k~ 66 (66)
T PF10746_consen 53 VWKKVRDWKRKNKE 66 (66)
T ss_pred HHHHHHHHHHhcCC
Confidence 33344556666654
No 289
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.41 E-value=2.3e+02 Score=24.97 Aligned_cols=10 Identities=70% Similarity=0.956 Sum_probs=7.0
Q ss_pred HHHHhhhccc
Q 034055 85 ARLLKLFEED 94 (105)
Q Consensus 85 AR~lKLFEed 94 (105)
.-++|+||-|
T Consensus 90 egl~~l~eG~ 99 (400)
T COG3071 90 EGLLKLFEGD 99 (400)
T ss_pred HHHHHHhcCc
Confidence 4578898754
No 290
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=26.39 E-value=97 Score=23.24 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKR 80 (105)
|.+++++++.++ +|-|++|
T Consensus 188 G~v~I~~l~~~~--~~l~~~r 206 (209)
T PF11353_consen 188 GTVLIVLLILLG--FLLRRRR 206 (209)
T ss_pred HHHHHHHHHHHH--HHHHHhh
Confidence 444444444433 4444433
No 291
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=26.20 E-value=46 Score=30.12 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=25.7
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~W 75 (105)
++++|-||.--++|-+|+++++-|+||+-
T Consensus 507 ~~~n~ykiagg~~~gla~~~~~g~~y~f~ 535 (576)
T PTZ00441 507 SSNNGYKIAGGVIAGLALVGCVGFAYNFV 535 (576)
T ss_pred CCCCCceeecchhhhHHHhhhhhhheeee
Confidence 47899999999999999999999999874
No 292
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=26.10 E-value=1.3e+02 Score=24.63 Aligned_cols=11 Identities=55% Similarity=0.507 Sum_probs=4.5
Q ss_pred eehhHHHHHHH
Q 034055 54 VGIVLLGLVAV 64 (105)
Q Consensus 54 v~ii~lg~va~ 64 (105)
++||++.+||+
T Consensus 237 ~v~vv~i~va~ 247 (272)
T PF12216_consen 237 VVIVVLIFVAA 247 (272)
T ss_pred EeeehhHHHHH
Confidence 33444444433
No 293
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=26.02 E-value=1.1e+02 Score=25.12 Aligned_cols=27 Identities=15% Similarity=-0.085 Sum_probs=13.8
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
.++.+...+++++++++++ -+||.-+.
T Consensus 112 ~~~~~~~lv~~vvl~l~~~-wwwq~~~~ 138 (331)
T PRK10856 112 WLMTFTWLVLFVVIGLTGA-WWWQNHKA 138 (331)
T ss_pred chHHHHHHHHHHHHHHHHH-HHhhcccc
Confidence 4444444445544554443 37876444
No 294
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.78 E-value=94 Score=26.30 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=12.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
--|+.++++.+++.+..+| .|-.|+|.
T Consensus 261 cgiaalvllil~vvliiLY-iWlyrrRK 287 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILY-IWLYRRRK 287 (295)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence 3444444444444444444 56555553
No 295
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=25.78 E-value=1.1e+02 Score=24.77 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=16.1
Q ss_pred ccCCCCce-eehhHHHHH-HHHHHHHHHHHHHHHH
Q 034055 46 SRGNTGAK-VGIVLLGLV-AVGLFSFFLFKLWQKK 78 (105)
Q Consensus 46 s~~~tg~~-v~ii~lg~v-a~~~~~~~~yK~Wqkk 78 (105)
+.++.+++ ++.+.+++- +||++++.+ -++-|+
T Consensus 56 ~s~ss~T~WvLY~VI~VSaaVIagAVPl-LLRARR 89 (207)
T PF10812_consen 56 SSGSSGTPWVLYAVIGVSAAVIAGAVPL-LLRARR 89 (207)
T ss_pred cCCCCCCCEeehHHHHHHHHHHHHHHHH-HHHHhh
Confidence 34444444 666666664 555555443 334443
No 296
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=25.57 E-value=1.2e+02 Score=21.02 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=17.5
Q ss_pred eehhHHHHHHHHHHHHHHHH------HHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFK------LWQKKKR 80 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK------~WqkkKR 80 (105)
+..+.++++.|+++++..|| -|-+++-
T Consensus 62 ~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA 94 (105)
T PF10183_consen 62 PFFFGFSGSLVFGGVFLAYKPDTSIQTWARREA 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45555666777777777777 5765443
No 297
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=25.51 E-value=1e+02 Score=22.16 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=23.4
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKK----KREEQYARL 87 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wqkk----KRe~q~AR~ 87 (105)
.-++++.++.+.....+.|+-|-|+ +...+.+|+
T Consensus 47 lSii~FI~giil~lG~~i~s~ygr~C~~s~~~~~~~R~ 84 (92)
T PF05767_consen 47 LSIICFILGIILTLGIVIFSMYGRYCRPSSKVIDNGRY 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCccccc
Confidence 3466777777777888899999554 345555554
No 298
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=25.50 E-value=1.2e+02 Score=24.16 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=7.2
Q ss_pred ceeehhHHHHHHHHHHHH
Q 034055 52 AKVGIVLLGLVAVGLFSF 69 (105)
Q Consensus 52 ~~v~ii~lg~va~~~~~~ 69 (105)
.|+++++++++++++++.
T Consensus 20 ~kl~~~~~~~i~~~~~~~ 37 (545)
T PRK15053 20 LRIFLLILVFSIFVIAAL 37 (545)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344443444443333333
No 299
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=25.42 E-value=30 Score=24.15 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034055 66 LFSFFLFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 66 ~~~~~~yK~WqkkKRe~q~AR~lK 89 (105)
++-+++|-+.+-|||..-|.||-|
T Consensus 54 ~~Fi~GfI~~RDRKrnkV~pRF~k 77 (77)
T PF11118_consen 54 VGFIAGFILHRDRKRNKVQPRFRK 77 (77)
T ss_pred HHHHHhHhheeeccccccchhhcC
Confidence 345567888899999999999854
No 300
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=25.34 E-value=1.4e+02 Score=23.26 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q~A 85 (105)
++..+.-|.++.|-++.|
T Consensus 20 a~P~l~~~~~~~~L~~~a 37 (195)
T TIGR02596 20 STPVVNQVLAAQQLGSSA 37 (195)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 334455554444444333
No 301
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=25.33 E-value=91 Score=19.23 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=16.3
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
++++++++-.+.++.+...=+|-=|+.|
T Consensus 2 ~l~~lip~sl~l~~~~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 2 ILYILIPVSLILGLIALAAFLWAVKSGQ 29 (45)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4556666655555555555677666543
No 302
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.31 E-value=79 Score=23.69 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=17.5
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
+.+++|.++.+++...+.-..|-+.|
T Consensus 17 ~~FA~L~i~~FiILLIi~~~IW~~~r 42 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITKSIWHDSR 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44556666666666777889997654
No 303
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=25.28 E-value=49 Score=26.30 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=17.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
++.+++|++.++++.+++..++.+.+|
T Consensus 247 i~ylvvg~i~~v~~i~~~~~~~~~~r~ 273 (278)
T PF03381_consen 247 IAYLVVGGICLVLAIIFLIIHYFKPRK 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444555777777777777776664443
No 304
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=25.23 E-value=84 Score=24.79 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034055 71 LFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 71 ~yK~WqkkKRe~q~AR~lK 89 (105)
.|.-|.+||+++++.+=.+
T Consensus 185 ~~q~W~~kK~~e~~~~r~~ 203 (264)
T PF13904_consen 185 RYQEWERKKKEEQQQKREE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6888999998888877443
No 305
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=25.13 E-value=14 Score=31.80 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 61 LVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 61 ~va~~~~~~~~yK~Wqk 77 (105)
++|++++++..||.|+.
T Consensus 211 ~aAliva~~cW~Rlqr~ 227 (341)
T PF06809_consen 211 AAALIVAGYCWYRLQRE 227 (341)
T ss_pred HHHHHHhhheEEEeccc
Confidence 34555555555555443
No 306
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=25.12 E-value=2.5e+02 Score=19.70 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKREEQYARLL 88 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKRe~q~AR~l 88 (105)
++.+++++..+=.++-+||=|.=.+...++-
T Consensus 4 lii~~~~~~~lQ~~l~~~Qik~f~~~~~~l~ 34 (109)
T PF06923_consen 4 LIILLVIAWLLQILLGWFQIKNFNKAYKELR 34 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444566677776655555554
No 307
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=24.89 E-value=40 Score=21.24 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 68 SFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
.=|+.+-|++.--+++-++++++|..
T Consensus 8 ~~Fa~rAfRRp~~~~e~~~~~~~~~~ 33 (64)
T PF07637_consen 8 RRFARRAFRRPLTDEEVDRYLALYDS 33 (64)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999864
No 308
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=24.71 E-value=1.2e+02 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=17.0
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
+|++..++++++.+++.|..-++-+..-
T Consensus 5 ~i~l~vi~il~ll~~~~yN~lv~~~~~v 32 (185)
T COG1704 5 LIILAVIVILLLLAVGGYNGLVKLREAV 32 (185)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444555566678888877766543
No 309
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=24.69 E-value=60 Score=26.58 Aligned_cols=25 Identities=8% Similarity=0.271 Sum_probs=14.8
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
-+++++.++++++++++.|++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (415)
T PRK11556 8 RWVIVIVVVIAAIAAFWFWQGRSTS 32 (415)
T ss_pred hHHHHHHHHHHHHHHHHhhhhcccC
Confidence 3455555666666666667766543
No 310
>PRK10249 phenylalanine transporter; Provisional
Probab=24.68 E-value=55 Score=26.58 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 034055 65 GLFSFFLFKLWQKK 78 (105)
Q Consensus 65 ~~~~~~~yK~Wqkk 78 (105)
.++.++.||+|+||
T Consensus 445 ~~~~~~~~~~~~~~ 458 (458)
T PRK10249 445 IVFLFVAFKTLRRK 458 (458)
T ss_pred HHHHHHHHHheecC
Confidence 34466688887765
No 311
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=24.55 E-value=79 Score=25.05 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKR 80 (105)
++.+.+|++|.+||.+..
T Consensus 9 ~ls~~~~~~w~~~~~~~~ 26 (366)
T TIGR03593 9 ALSFVIFLLWQAWQSDPG 26 (366)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 334467789999998753
No 312
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=24.49 E-value=1.9e+02 Score=24.30 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=26.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034055 58 LLGLVAVGL-FSFFLFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 58 ~lg~va~~~-~~~~~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
+++++..++ +..+++-..|+|..|.++.|+++-+|+
T Consensus 9 ~~~~~~~~~~~~~~~~p~~~~~~~~~~R~~~i~~ie~ 45 (285)
T PF01972_consen 9 LFSLLFWLFFIFLFLQPVLQQRMLEAARLRLIREIEE 45 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333 334688899999999999999998875
No 313
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=24.47 E-value=68 Score=24.33 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkK 79 (105)
+..++..++++||.+|+.
T Consensus 36 vv~~lli~~~~kyr~r~~ 53 (217)
T TIGR01432 36 VVFVLFTIFLVKYRYRKD 53 (217)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 344445566677765543
No 314
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.45 E-value=1.3e+02 Score=27.54 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=16.2
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLF 91 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLF 91 (105)
+++++|++ |++.+++++-|..|||-+ +|+.||=
T Consensus 2 ~~liv~ll-Vilv~~~~~g~~lRkk~~---~rI~~LE 34 (570)
T COG4477 2 IYLIVALL-VILVAAYAVGYLLRKKNY---QRIDKLE 34 (570)
T ss_pred eehHHHHH-HHHHHHHHHHHHHHHhHH---HHHHHHH
Confidence 33444443 334444455666666543 3555543
No 315
>PF14163 SieB: Superinfection exclusion protein B
Probab=24.43 E-value=1.8e+02 Score=20.47 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=17.7
Q ss_pred HHHHHH-HHHHHHHHHHHhhhccchhhhhh
Q 034055 72 FKLWQK-KKREEQYARLLKLFEEDDELEVE 100 (105)
Q Consensus 72 yK~Wqk-kKRe~q~AR~lKLFEedDdle~E 100 (105)
|+...+ .++.+.+++.-|-+..=|+.|..
T Consensus 56 ~~~~~~~~~~k~~~~~~~~~l~~Lt~~Eka 85 (151)
T PF14163_consen 56 YKEAKDRYQRKRKKKKIEKKLNSLTPEEKA 85 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 444444 44445557777887777776654
No 316
>PRK11677 hypothetical protein; Provisional
Probab=24.12 E-value=1.5e+02 Score=21.90 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSF 69 (105)
Q Consensus 58 ~lg~va~~~~~~ 69 (105)
++|++.-++++-
T Consensus 11 ivG~iiG~~~~R 22 (134)
T PRK11677 11 VVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHh
Confidence 334443333333
No 317
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.10 E-value=80 Score=21.65 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKR 80 (105)
+.|++.++.+|-.+.||+-
T Consensus 10 ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 10 ICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3344444456666766653
No 318
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=23.99 E-value=2.1e+02 Score=18.86 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKKREEQYARL 87 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q~AR~ 87 (105)
+.++++-+|.-+.+.+||...
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~ 30 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEH 30 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhheecHHHHHHHHH
Confidence 444455555555555555433
No 319
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.83 E-value=2.9e+02 Score=19.97 Aligned_cols=7 Identities=0% Similarity=-0.230 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 034055 84 YARLLKL 90 (105)
Q Consensus 84 ~AR~lKL 90 (105)
+++...-
T Consensus 51 ~~~I~~~ 57 (175)
T PRK14472 51 EKGIQSS 57 (175)
T ss_pred HHHHHHH
Confidence 3334333
No 320
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.75 E-value=1.3e+02 Score=21.44 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKR 80 (105)
|+.-.+++....+++||+++-
T Consensus 88 ~~a~~A~~Lal~i~~yr~~gt 108 (119)
T PRK08388 88 GVCVLSLAMALTINAYRHYGT 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 444555666678888888764
No 321
>PTZ00370 STEVOR; Provisional
Probab=23.64 E-value=1.1e+02 Score=25.92 Aligned_cols=25 Identities=28% Similarity=0.691 Sum_probs=10.8
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
-|+.++++.+++.+..+| .|-.|+|
T Consensus 258 giaalvllil~vvliilY-iwlyrrR 282 (296)
T PTZ00370 258 GIAALVLLILAVVLIILY-IWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 344444444444444444 4554444
No 322
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=23.55 E-value=1.1e+02 Score=22.98 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 59 lg~va~~~~~~~~yK~WqkkKR 80 (105)
+.++.++......+..|+|+|+
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~ 205 (208)
T COG0586 184 LAVLVLVLLLALLWWLRRRKKK 205 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333344444444443
No 323
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=23.52 E-value=2e+02 Score=21.01 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q~A 85 (105)
++++++-|||.-+|-.+-|
T Consensus 85 ~gL~~i~~~q~~~~~~e~a 103 (131)
T PF12279_consen 85 AGLAGINYWQDQQRINELA 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666888999877755443
No 324
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=23.49 E-value=1.2e+02 Score=25.93 Aligned_cols=30 Identities=3% Similarity=-0.104 Sum_probs=19.3
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
..|++++++.++.++++.+..+-||..++.
T Consensus 10 ~~Kl~l~~~~~~~~~~~i~~~~~~~~~~~~ 39 (921)
T PRK15347 10 VIRLTLLLGLTLIIIWLLSVATTAYFSFEQ 39 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666667777765544
No 325
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=23.31 E-value=75 Score=26.94 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKR 80 (105)
++|+.+.+++-|+|++|+.
T Consensus 284 v~v~~~Ga~~~kL~~rK~~ 302 (303)
T COG4714 284 VVVLPLGAVLKKLWRRKAK 302 (303)
T ss_pred HHhhhhHHHHHHHHhhccC
Confidence 3455556778899998864
No 326
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=23.29 E-value=1e+02 Score=21.41 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=18.6
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~Wqkk 78 (105)
+-|-+++++-+++++++-.|..||.-
T Consensus 17 kkiS~~va~P~v~l~~~n~y~~~~eh 42 (86)
T cd00925 17 KKISFYVALPAVALCMLNAYLKHKEH 42 (86)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhhcc
Confidence 34445556678888888899888653
No 327
>COG1288 Predicted membrane protein [Function unknown]
Probab=23.28 E-value=1.1e+02 Score=27.61 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhccchhhhhhcCCC
Q 034055 63 AVGLFSFFLFKLWQKKKRE-------EQYARLLKLFEEDDELEVELGLR 104 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe-------~q~AR~lKLFEedDdle~ELGL~ 104 (105)
.++....++|.|=+|=||. |++.++-+.|.-+|+.++|+-.|
T Consensus 226 ~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~~~~~~~Ft~~ 274 (481)
T COG1288 226 FTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVEDSGERPFTFR 274 (481)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhccccccccchh
Confidence 3344455567777765542 34445555555455546655443
No 328
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.26 E-value=73 Score=29.77 Aligned_cols=10 Identities=50% Similarity=0.760 Sum_probs=5.5
Q ss_pred chhhhhhcCC
Q 034055 94 DDELEVELGL 103 (105)
Q Consensus 94 dDdle~ELGL 103 (105)
.|.+|.|+|.
T Consensus 359 ~~~iele~Gy 368 (696)
T COG1298 359 IDPIELELGY 368 (696)
T ss_pred cccceeeecc
Confidence 3455566654
No 329
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=23.21 E-value=1.8e+02 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQK--KKREEQYA 85 (105)
Q Consensus 63 a~~~~~~~~yK~Wqk--kKRe~q~A 85 (105)
.+.+++...+++|++ ||..--++
T Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~ 115 (169)
T PF07694_consen 91 LIGILAGLISRFFRRKSKKIKLLYL 115 (169)
T ss_pred HHHHHHHHHHHHHHhcchhccHHHH
Confidence 344455566777877 44444444
No 330
>PF14142 YrzO: YrzO-like protein
Probab=23.12 E-value=2.2e+02 Score=18.31 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 034055 77 KKKREEQYARLLKLFEE 93 (105)
Q Consensus 77 kkKRe~q~AR~lKLFEe 93 (105)
-+|.-.|||.+++|..|
T Consensus 24 grk~ikqqaeliqllke 40 (46)
T PF14142_consen 24 GRKKIKQQAELIQLLKE 40 (46)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34556788999888765
No 331
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=23.12 E-value=1.5e+02 Score=24.46 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 034055 74 LWQKKKREE 82 (105)
Q Consensus 74 ~WqkkKRe~ 82 (105)
.|.+|.||+
T Consensus 253 ~~~~krre~ 261 (262)
T PF11884_consen 253 RWNQKRREM 261 (262)
T ss_pred HHHHHHHhc
Confidence 344444443
No 332
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=23.12 E-value=67 Score=27.37 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKRe 81 (105)
+-++++.+=.+|.|+|||||
T Consensus 498 ~pl~~~~~~~~k~~~~~rk~ 517 (517)
T PF10510_consen 498 VPLLLGLLKELKEWRKRRKE 517 (517)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 34555666788999988875
No 333
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.04 E-value=1.2e+02 Score=22.67 Aligned_cols=23 Identities=9% Similarity=0.531 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkK 79 (105)
|.+|+...+++....|+.||+..
T Consensus 106 IVIG~a~tA~~LaL~~r~y~~~g 128 (140)
T PRK12661 106 IVIGLATTAFILILAYRIYEEYG 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34466666777778899998654
No 334
>PHA03295 envelope glycoprotein H; Provisional
Probab=23.04 E-value=81 Score=29.20 Aligned_cols=25 Identities=16% Similarity=0.261 Sum_probs=20.8
Q ss_pred CceeehhHHHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 51 g~~v~ii~lg~va~~~~~~~~yK~W 75 (105)
...++++++++++.+++.+++||.-
T Consensus 687 ~~~ii~iil~~i~ai~~ly~lykm~ 711 (714)
T PHA03295 687 QTSIILVIIYVLIAIIALFGLYRLC 711 (714)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4557888889999999999999973
No 335
>PRK01908 electron transport complex protein RnfG; Validated
Probab=23.01 E-value=2.3e+02 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhhccc
Q 034055 78 KKREEQYARLLKLFEED 94 (105)
Q Consensus 78 kKRe~q~AR~lKLFEed 94 (105)
.++++.++.+.+.|-++
T Consensus 33 ~~~~~~~~~l~~vlp~~ 49 (205)
T PRK01908 33 QAALQQKALLDQVIPAE 49 (205)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 34445556677777764
No 336
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=22.95 E-value=94 Score=26.91 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 034055 70 FLFKLWQKKKR 80 (105)
Q Consensus 70 ~~yK~WqkkKR 80 (105)
++=|+|.|||.
T Consensus 461 ~~k~~~~~~~~ 471 (482)
T PRK11404 461 VLKGLWLRRKA 471 (482)
T ss_pred HHhhHhhhhhH
Confidence 33445554433
No 337
>COG2149 Predicted membrane protein [Function unknown]
Probab=22.80 E-value=99 Score=23.16 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 034055 71 LFKLWQKKKREEQY 84 (105)
Q Consensus 71 ~yK~WqkkKRe~q~ 84 (105)
++--||+-+|+++.
T Consensus 74 g~~r~~~~~~amrr 87 (120)
T COG2149 74 GALRWQRVERAMRR 87 (120)
T ss_pred HHHHHHHHHHHHHc
Confidence 56678888877653
No 338
>PRK12704 phosphodiesterase; Provisional
Probab=22.78 E-value=1.7e+02 Score=25.50 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKL 74 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~ 74 (105)
++++++++++++.+.+|+.
T Consensus 6 ~~~~~ivg~~iG~~ig~~i 24 (520)
T PRK12704 6 IILIALVALVVGAVIGYFV 24 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555544444444444
No 339
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=22.77 E-value=1.7e+02 Score=16.95 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q 034055 73 KLWQKKKREE 82 (105)
Q Consensus 73 K~WqkkKRe~ 82 (105)
--|-|.||+|
T Consensus 17 ISWIK~kr~~ 26 (26)
T PF01372_consen 17 ISWIKNKRQQ 26 (26)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHhcC
Confidence 4599999875
No 340
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.77 E-value=2e+02 Score=23.32 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKK 79 (105)
Q Consensus 67 ~~~~~yK~WqkkK 79 (105)
+.+.+++.|++.+
T Consensus 37 ll~~~~~~~~~~~ 49 (318)
T PF12725_consen 37 LLYYLIRLIRKIF 49 (318)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555433
No 341
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.76 E-value=1.2e+02 Score=22.60 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 034055 66 LFSFFLFKLWQKK 78 (105)
Q Consensus 66 ~~~~~~yK~Wqkk 78 (105)
+++++++.||+||
T Consensus 188 ~i~~~~~~~lkkk 200 (206)
T PF06570_consen 188 VIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666665
No 342
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=22.73 E-value=68 Score=20.32 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=13.4
Q ss_pred ehhHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFK 73 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK 73 (105)
+|++-|+++|.+.+..+.+
T Consensus 19 vI~L~GF~~Vav~~~~lL~ 37 (42)
T PF09574_consen 19 VIILSGFAAVAVASIWLLS 37 (42)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3566799888887765544
No 343
>COG4658 RnfD Predicted NADH:ubiquinone oxidoreductase, subunit RnfD [Energy production and conversion]
Probab=22.71 E-value=81 Score=27.18 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=24.0
Q ss_pred hhhhcc--------ccCCCCCCcCCCcccccccccCCCCceeehhHHHHHHHHHHHHHH
Q 034055 21 LQFIPA--------ISDDPSSTKKGKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFL 71 (105)
Q Consensus 21 lqf~~g--------ls~d~s~sk~~~k~~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~ 71 (105)
.|++|| ++.||-++ +..+.|+-|--+++|+.+.++-.++.
T Consensus 258 ~hl~SG~~mlgAFFIaTDpVTs-----------~~T~~Gr~IfG~l~G~lv~lIr~~G~ 305 (338)
T COG4658 258 VHLFSGGTMLGAFFIATDPVTS-----------STTNRGRLIFGALCGVLVWLIRSFGG 305 (338)
T ss_pred HHHHhchHHHhhheeecCCccc-----------ccCCCceeeehhHHHHHHHHHHHhCC
Confidence 456666 67787432 45566666666666776665554433
No 344
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=22.69 E-value=77 Score=24.98 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=12.6
Q ss_pred ccccccCCCCceeehhHH
Q 034055 42 AHHTSRGNTGAKVGIVLL 59 (105)
Q Consensus 42 ~h~~s~~~tg~~v~ii~l 59 (105)
++.-.+..+|.+|||.++
T Consensus 215 p~~~~rk~~g~~v~~fl~ 232 (250)
T COG2857 215 PEKEERKRLGFKVMIFLV 232 (250)
T ss_pred ccHHHhhcCCeeehhHHH
Confidence 333356779999988765
No 345
>KOG4007 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.68 E-value=1.6e+02 Score=24.26 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=10.1
Q ss_pred ccCCCCceeehhHH-HHHHH
Q 034055 46 SRGNTGAKVGIVLL-GLVAV 64 (105)
Q Consensus 46 s~~~tg~~v~ii~l-g~va~ 64 (105)
+++.|-.||++|+. .++++
T Consensus 127 ~RnTtliKVvvIivi~ii~i 146 (229)
T KOG4007|consen 127 ERNTTLIKVVVIIVISIIGI 146 (229)
T ss_pred ccCceEEEEEEeehHHHHHH
Confidence 44556667665544 44433
No 346
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=22.58 E-value=78 Score=24.47 Aligned_cols=18 Identities=17% Similarity=0.481 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q~ 84 (105)
..+.+--+|+++.|.|.|
T Consensus 371 ~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK11195 371 VALAMALLWRWHRRNQRQ 388 (393)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 455566789888887765
No 347
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=22.57 E-value=18 Score=27.04 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=2.2
Q ss_pred ccccccccCCCCceeehhHHHHHHHHHH
Q 034055 40 SAAHHTSRGNTGAKVGIVLLGLVAVGLF 67 (105)
Q Consensus 40 ~~~h~~s~~~tg~~v~ii~lg~va~~~~ 67 (105)
...+-|.+--.|.-+++|+||++.++.+
T Consensus 17 ~~syitAEEAaGIGiL~VILgiLLliGC 44 (118)
T PF14991_consen 17 GHSYITAEEAAGIGILIVILGILLLIGC 44 (118)
T ss_dssp -----------SSS--------------
T ss_pred CcceeeHHHhccceeHHHHHHHHHHHhh
Confidence 3445555666777777777776665555
No 348
>PRK10580 proY putative proline-specific permease; Provisional
Probab=22.36 E-value=50 Score=26.57 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 65 GLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 65 ~~~~~~~yK~WqkkKRe 81 (105)
++..++.|+.|+|.+|+
T Consensus 436 ~~~~~~~y~~~~~~~~~ 452 (457)
T PRK10580 436 IVLLLIGWMFKRRHDRQ 452 (457)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 44566789988765554
No 349
>PLN02351 cytochromes b561 family protein
Probab=22.35 E-value=3.2e+02 Score=22.27 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhccccCCCCCCcCCCcccccccccCCCCceeehhHHHHHHHHHHHHHHHHHHH
Q 034055 14 LLISSICLQFIPAISDDPSSTKKGKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKLWQ 76 (105)
Q Consensus 14 l~~~si~lqf~~gls~d~s~sk~~~k~~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~yK~Wq 76 (105)
++...-++||--|++=|+++.++-.=-.-|+ +..++|++.+..-+...||.++
T Consensus 25 ~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP----------~lMviGfi~L~geAILvYR~~~ 77 (242)
T PLN02351 25 VLVLYWALFFKSSFLPQSTSQEDLVYAVLHP----------LLMVIGFILISGEAILVHRWLP 77 (242)
T ss_pred HHHHHHHHHhCCccccCCCCCccceeecccH----------HHHHHHHHHHHHHHHHHhhccc
Confidence 3444557788899988763321101113454 5667788888888999999986
No 350
>PF14256 YwiC: YwiC-like protein
Probab=22.24 E-value=1.1e+02 Score=21.81 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKKR 80 (105)
Q Consensus 67 ~~~~~yK~WqkkKR 80 (105)
+++-+|--||||.|
T Consensus 94 ~~v~~~~~~~~~eR 107 (129)
T PF14256_consen 94 FAVNLYFAKRKRER 107 (129)
T ss_pred HHHHHHHHHhcCch
Confidence 33334444444443
No 351
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.23 E-value=1.6e+02 Score=24.47 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~q~AR 86 (105)
++.+++-.+|-+||+-+.-.+.|+
T Consensus 28 l~ml~AgA~Y~~yQ~~EQAr~~A~ 51 (301)
T PF06120_consen 28 LVMLGAGAWYYFYQNAEQARQEAI 51 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566888998776665554
No 352
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.20 E-value=2.6e+02 Score=21.56 Aligned_cols=6 Identities=67% Similarity=0.900 Sum_probs=2.9
Q ss_pred hhhcCC
Q 034055 98 EVELGL 103 (105)
Q Consensus 98 e~ELGL 103 (105)
.+|||+
T Consensus 120 ~~elg~ 125 (225)
T cd02434 120 TEELGL 125 (225)
T ss_pred HhhccC
Confidence 345554
No 353
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=22.19 E-value=90 Score=21.50 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKR 80 (105)
++.++...+++|.++-.|+.+|+
T Consensus 54 lll~~~~~vg~f~g~vmik~~~k 76 (78)
T PF07297_consen 54 LLLLGLSGVGTFLGYVMIKSKKK 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 33444556678888888877664
No 354
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=22.18 E-value=56 Score=35.73 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 48 GNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 48 ~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR 86 (105)
...|+--+|+++.++|++.+++++|-+-+||++...+++
T Consensus 3988 ~~~gkaEli~I~V~l~~ifilvvlf~~crKk~~rkky~~ 4026 (4289)
T KOG1219|consen 3988 LWLGKAELIIIIVLLALIFILVVLFWKCRKKNSRKKYGA 4026 (4289)
T ss_pred chhcccceeehhHHHHHHHHHHHHHHhhhhhccCCcccc
Confidence 347888888888999999999999999999988766554
No 355
>PHA03265 envelope glycoprotein D; Provisional
Probab=22.17 E-value=1.7e+02 Score=25.90 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=35.9
Q ss_pred CCcccccccccCCCCceeehhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhc
Q 034055 37 GKQSAAHHTSRGNTGAKVGIVLLGLVAVGLFSFFLFKL--WQKKKREEQYARLLKLFE 92 (105)
Q Consensus 37 ~~k~~~h~~s~~~tg~~v~ii~lg~va~~~~~~~~yK~--WqkkKRe~q~AR~lKLFE 92 (105)
++|..+..+.+.+.|..|-..+.|+|.|.+.+++.++- -|||..+.---|+-.-|.
T Consensus 337 ~~~~~~s~~~~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k~~~~~~~~~~~~~~ 394 (402)
T PHA03265 337 TKPPPTSKSNSTFVGISVGLGIAGLVLVGVILYVCLRRKKELKKSAQNGLTRLRSTFK 394 (402)
T ss_pred cCCCCCCCCCCcccceEEccchhhhhhhhHHHHHHhhhhhhhhhhhhcCChhhhhhhc
Confidence 34444444467789999999999998888888887754 444444333445544443
No 356
>PTZ00045 apical membrane antigen 1; Provisional
Probab=22.00 E-value=89 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=17.3
Q ss_pred eeehhHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHhh
Q 034055 53 KVGIVLLGLV-AVGLFSFFLFKLW--QKKKREEQYARLLKL 90 (105)
Q Consensus 53 ~v~ii~lg~v-a~~~~~~~~yK~W--qkkKRe~q~AR~lKL 90 (105)
+++|++++++ +++++....+.+| +||.....+-|+..-
T Consensus 514 ~~~i~iia~~~~~~~vl~~~~~~~~~k~~~~~~~ydk~~~~ 554 (595)
T PTZ00045 514 RILIIIIAATGAVVLVLLAYFSYRYYRKKGNKDKYDKMDEA 554 (595)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhh
Confidence 5555555433 3333323344455 444444555555443
No 357
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.83 E-value=2e+02 Score=19.44 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 64 VGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 64 ~~~~~~~~yK~WqkkKRe~q 83 (105)
++-..+..+-||+.||+-++
T Consensus 112 ~IYliIw~~~y~~~k~~i~k 131 (136)
T PF11457_consen 112 IIYLIIWLIFYLYWKKDIKK 131 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445556666655443
No 358
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=21.67 E-value=1.2e+02 Score=21.68 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 034055 66 LFSFFLFKLWQKKKRE 81 (105)
Q Consensus 66 ~~~~~~yK~WqkkKRe 81 (105)
...++.+-+++|||+=
T Consensus 69 ~~l~~~~lffkr~~~~ 84 (149)
T PF10754_consen 69 FTLWLLYLFFKRKRRF 84 (149)
T ss_pred HHHHHHHHHHHccchh
Confidence 3344455555555543
No 359
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=21.64 E-value=1e+02 Score=25.11 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 034055 65 GLFSFFLFKLWQKKKREEQYARLLKLFEEDDEL 97 (105)
Q Consensus 65 ~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdl 97 (105)
+++++.+. .|.|+|.+.|++ +-||+..+.
T Consensus 319 Il~Gv~l~-~~~~~~~~~~~~---~~~~~~~~~ 347 (358)
T PLN00411 319 ITLGFYAV-MWGKANEEKDQL---LSFSGKEKT 347 (358)
T ss_pred HHHHHHHH-Hhhhhhhhhhcc---cCccccccc
Confidence 33333333 466666665554 445544333
No 360
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=21.51 E-value=97 Score=27.78 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=13.9
Q ss_pred cCCCCceeehhHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLF 67 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~ 67 (105)
+-++|+|.++...++++++++
T Consensus 9 ~ls~~~Kkvl~atA~g~v~l~ 29 (514)
T PF10265_consen 9 KLSPGLKKVLFATAVGVVSLI 29 (514)
T ss_pred eccccceeeeehhHHHHHHHH
Confidence 445788888777766665543
No 361
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.30 E-value=1.4e+02 Score=21.91 Aligned_cols=25 Identities=8% Similarity=0.402 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
|.+|+...++.....++.||+..-.
T Consensus 81 IVIg~a~tA~~L~L~~r~~~~~gt~ 105 (125)
T PRK12658 81 IVIGFGLLAFLLVLAYRAYQDLGTD 105 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4446656667777889999987653
No 362
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.29 E-value=1.1e+02 Score=19.13 Aligned_cols=6 Identities=17% Similarity=0.008 Sum_probs=2.7
Q ss_pred HHHHHH
Q 034055 70 FLFKLW 75 (105)
Q Consensus 70 ~~yK~W 75 (105)
.+++++
T Consensus 27 ~l~~~~ 32 (79)
T PF04277_consen 27 SLMSKL 32 (79)
T ss_pred HHHHHH
Confidence 344444
No 363
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=21.19 E-value=55 Score=27.68 Aligned_cols=18 Identities=0% Similarity=0.058 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 60 g~va~~~~~~~~yK~Wqk 77 (105)
+++.-.+..+++...+.|
T Consensus 319 ailig~vvtavl~~~~k~ 336 (359)
T PRK10478 319 AVAVGAVVTAVCVNVLKS 336 (359)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 333333344445555544
No 364
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.18 E-value=2.9e+02 Score=19.09 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 59 LGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 59 lg~va~~~~~~~~yK~W 75 (105)
..++.++++.++++++.
T Consensus 9 ~~~i~Flil~~il~~~~ 25 (156)
T PRK05759 9 GQLIAFLILVWFIMKFV 25 (156)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555555565553
No 365
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=21.08 E-value=76 Score=23.02 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q 83 (105)
..+.++..|.|+++|++
T Consensus 58 ~~i~G~~~W~~~~~~~~ 74 (181)
T PF04973_consen 58 MSIYGWYQWKKGRDEND 74 (181)
T ss_pred HHHHHHHHHHhhhccCc
Confidence 56778889997664443
No 366
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=21.06 E-value=1.4e+02 Score=22.38 Aligned_cols=18 Identities=11% Similarity=0.325 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH-HHH
Q 034055 60 GLVAVGLFSFFLFKL-WQK 77 (105)
Q Consensus 60 g~va~~~~~~~~yK~-Wqk 77 (105)
-+|++++++++++|| |..
T Consensus 10 q~I~FlIll~ll~kfawkP 28 (154)
T PRK06568 10 LAVSFVIFVYLIYRPAKKA 28 (154)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 344444555556665 653
No 367
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=21.04 E-value=82 Score=26.46 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=6.0
Q ss_pred eehhHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGL 66 (105)
Q Consensus 54 v~ii~lg~va~~~ 66 (105)
|||.++.+++++.
T Consensus 10 ivig~i~i~~il~ 22 (293)
T PRK00269 10 IVIGIIVIAGILF 22 (293)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 368
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=20.89 E-value=1.9e+02 Score=19.86 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 61 LVAVGLFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 61 ~va~~~~~~~~yK~WqkkKRe~q~AR 86 (105)
+++.+++.+...+..+|+|=++.++=
T Consensus 9 i~~~v~~~~~ii~~vr~~~l~~~~~l 34 (115)
T PF10066_consen 9 IIIAVLFLLFIIRLVRKRKLRLKYSL 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 33334445556777777776666653
No 369
>PF04479 RTA1: RTA1 like protein; InterPro: IPR007568 This family is comprised of fungal proteins with multiple transmembrane regions. RTA1 (P53047 from SWISSPROT) is involved in resistance to 7-aminocholesterol [], while RTM1 (P40113 from SWISSPROT) confers resistance to an unknown toxic chemical in molasses []. These proteins may bind to the toxic substance, and thus prevent toxicity. They are not thought to be involved in the efflux of xenobiotics [].; GO: 0006950 response to stress, 0016021 integral to membrane
Probab=20.86 E-value=2e+02 Score=21.86 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=20.2
Q ss_pred HHHHHHhhhhhcc-ccCCCCCCcCCCcccccccccCCCCceeehhHHHH
Q 034055 14 LLISSICLQFIPA-ISDDPSSTKKGKQSAAHHTSRGNTGAKVGIVLLGL 61 (105)
Q Consensus 14 l~~~si~lqf~~g-ls~d~s~sk~~~k~~~h~~s~~~tg~~v~ii~lg~ 61 (105)
.=+.|+.+|..-| ++.+. + +.++|.++++.-+++
T Consensus 79 ~Dv~s~~lQ~~Gg~l~~~~------------~--s~~~G~~i~iaGl~~ 113 (226)
T PF04479_consen 79 LDVISLVLQAAGGGLAASA------------N--SRKTGRNIVIAGLAL 113 (226)
T ss_pred HHHHHHHHhhcCcceeeec------------c--cccCCCEEEEehHHH
Confidence 3456777787644 33222 1 256788988876654
No 370
>COG4420 Predicted membrane protein [Function unknown]
Probab=20.85 E-value=4.4e+02 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKKKREEQYAR 86 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKRe~q~AR 86 (105)
+++|.+-.-+++.. |.++.++|+.|
T Consensus 97 S~~AaiqAp~IlmS--QNRQa~rDr~~ 121 (191)
T COG4420 97 STLAAIQAPLILMS--QNRQAERDRLR 121 (191)
T ss_pred HHHHHHHHhHHHHH--HhHHHHHHHHH
Confidence 55666666666655 44444444443
No 371
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.74 E-value=3.4e+02 Score=19.73 Aligned_cols=12 Identities=0% Similarity=0.113 Sum_probs=4.8
Q ss_pred HHHHHHHhhhcc
Q 034055 82 EQYARLLKLFEE 93 (105)
Q Consensus 82 ~q~AR~lKLFEe 93 (105)
+.++++.+-.++
T Consensus 49 ~R~~~I~~~l~~ 60 (173)
T PRK13453 49 KRERDINRDIDD 60 (173)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 372
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.73 E-value=2.5e+02 Score=18.08 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 034055 68 SFFLFKLWQKKKREEQYARLLKLF 91 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q~AR~lKLF 91 (105)
.|...-+++=+|.=.+-.+.++-.
T Consensus 15 i~l~~~l~~l~~~l~~~~~ti~~l 38 (90)
T PF06103_consen 15 IFLIKVLKKLKKTLDEVNKTIDTL 38 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343333334444433
No 373
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=20.73 E-value=1.4e+02 Score=18.43 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~Wqk 77 (105)
|.+|++.+.++..|.--|-|-
T Consensus 9 iVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 9 IVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 456777666665554444443
No 374
>PRK12705 hypothetical protein; Provisional
Probab=20.69 E-value=2e+02 Score=25.53 Aligned_cols=12 Identities=25% Similarity=0.066 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKK 79 (105)
Q Consensus 68 ~~~~yK~WqkkK 79 (105)
.+++||+.|.+|
T Consensus 22 ~~~~~~~~~~~~ 33 (508)
T PRK12705 22 VVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHH
Confidence 444556665555
No 375
>PF08375 Rpn3_C: Proteasome regulatory subunit C-terminal; InterPro: IPR013586 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome is a self-compartmentalising protease responsible for the regulated degradation of intracellular proteins in eukaryotes [, ]. This giant intracellular protease is formed by several subunits arranged into two 19S polar caps, where protein recognition and ATP-dependent unfolding occur, flanking a 20S central barrel-shaped structure with an inner proteolytic chamber. This overall structure is highly conserved among eukaryotes and is essential for cell viability. Proteins targeted to the 26S proteasome are conjugated with a polyubiquitin chain by an enzymatic cascade before delivery to the 26S proteasome for degradation into oligopeptides. The 19S component is divided into a "base" subunit containing six ATPases (Rpt proteins) and two non-ATPases (Rpn1, Rpn2), and a "lid" subunit composed of eight stoichiometric proteins (Rpn3, Rpn5, Rpn6, Rpn7, Rpn8, Rpn9, Rpn11, Rpn12) []. Additional non-essential and species specific proteins may also be present. The 19S unit performs several essential functions including binding the specific protein substrates, unfolding them, cleaving the attached ubiquitin chains, opening the 20S subunit, and driving the unfolded polypeptide into the proteolytic chamber for degradation. The 26s proteasome and 19S regulator are of medical interest due to their involvement in burn rehabilitation []. This eukaryotic domain is found at the C terminus of 26S proteasome regulatory subunits such as the non-ATPase Rpn3 subunit which is essential for proteasomal function []. It occurs together with the PCI/PINT domain (IPR000717 from INTERPRO). ; GO: 0030234 enzyme regulator activity, 0042176 regulation of protein catabolic process, 0000502 proteasome complex
Probab=20.57 E-value=85 Score=20.93 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhccch
Q 034055 77 KKKREEQYARLLKLFEEDD 95 (105)
Q Consensus 77 kkKRe~q~AR~lKLFEedD 95 (105)
++.|++|.--+.|..+|+|
T Consensus 47 ~~ere~~e~el~~e~~e~D 65 (68)
T PF08375_consen 47 RREREQQEEELAKEIEEGD 65 (68)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 4566777777888888874
No 376
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=20.56 E-value=39 Score=29.13 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=21.8
Q ss_pred CCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 50 TGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 50 tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q 83 (105)
.|..+++|....++.++++.++--+|-|.+||..
T Consensus 196 d~l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~r 229 (341)
T PF06809_consen 196 DGLTLVLIVVCCVAGAAALIVAGYCWYRLQREIR 229 (341)
T ss_pred CCeeeehhHHHHHHHHHHHHHhhheEEEeccccc
Confidence 3445566655666666666666667888777654
No 377
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=20.31 E-value=2.3e+02 Score=20.71 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=9.6
Q ss_pred HHHHHHHhhhccchhhhhhcCC
Q 034055 82 EQYARLLKLFEEDDELEVELGL 103 (105)
Q Consensus 82 ~q~AR~lKLFEedDdle~ELGL 103 (105)
|++.+-...-|+|.....|+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~e~~~ 89 (175)
T cd02437 68 EKEKILLRLEQMLTSTREELAI 89 (175)
T ss_pred HHhChhhhHHHHHHHHHHHhcc
Confidence 3333333333444444455554
No 378
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=20.29 E-value=1.4e+02 Score=19.70 Aligned_cols=20 Identities=15% Similarity=0.692 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQK 77 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~Wqk 77 (105)
++.+|++.+ +++++|=+|+|
T Consensus 72 li~~~~~~f--~~~v~yI~~rR 91 (92)
T PF03908_consen 72 LIFFAFLFF--LLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHH--HHHHHHHhhhc
Confidence 334444433 34445666654
No 379
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=20.20 E-value=1.6e+02 Score=25.09 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=14.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
++++++++.++.+.++++.+|.++.|.
T Consensus 597 ~F~i~~~g~~lal~vfi~E~~~~~~~~ 623 (656)
T KOG1052|consen 597 LFLILLVGYLLALLVFILELLYSRRRT 623 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555555554444
No 380
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=20.17 E-value=91 Score=25.26 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 034055 66 LFSFFLFK 73 (105)
Q Consensus 66 ~~~~~~yK 73 (105)
+++++.|.
T Consensus 18 ~~~~~~~~ 25 (342)
T TIGR00247 18 LGSILSYK 25 (342)
T ss_pred HHHHHHHH
Confidence 33333443
No 381
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=20.06 E-value=60 Score=28.06 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=17.4
Q ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 47 RGNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 47 ~~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
.++.+.+-++|.+.++++++ +.+|..|.+||+.
T Consensus 25 ~~~~~~~~~~v~~~~~~~~~--~~~w~~~~~~~~~ 57 (376)
T PRK13855 25 RRLSGSQKLIVAGLVLALSL--SLIWLGGRSKKEN 57 (376)
T ss_pred ccCccchhhhHHHHHHHHHH--HHHHhccCCCccc
Confidence 45566666666555554433 3445556455543
Done!