Query 034055
Match_columns 105
No_of_seqs 34 out of 36
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 15:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 94.0 0.0042 1.4E-07 38.0 -1.6 35 48-82 7-41 (44)
2 2ks1_B Epidermal growth factor 93.4 0.035 1.2E-06 33.7 1.7 34 48-81 8-41 (44)
3 2knc_B Integrin beta-3; transm 91.7 0.26 9E-06 32.3 4.4 33 56-88 16-48 (79)
4 3qf7_D MRE11; ABC-ATPase, ATPa 86.4 0.14 4.8E-06 32.3 0.0 25 69-94 10-34 (50)
5 2lx0_A Membrane fusion protein 84.9 0.38 1.3E-05 28.0 1.4 19 60-78 14-32 (32)
6 2jwa_A Receptor tyrosine-prote 84.4 0.27 9.2E-06 30.0 0.6 28 53-80 13-40 (44)
7 2k1k_A Ephrin type-A receptor 82.1 0.31 1.1E-05 28.4 0.3 28 51-78 10-38 (38)
8 1v54_I STA, cytochrome C oxida 81.4 2.9 9.8E-05 27.5 4.8 47 53-99 16-62 (73)
9 2j5l_A Apical membrane antigen 75.5 0.57 1.9E-05 41.0 0.0 37 58-94 518-554 (581)
10 1s7q_A H-2KB, H-2 class I hist 71.5 0.81 2.8E-05 35.3 0.0 15 65-79 298-313 (348)
11 2k9y_A Ephrin type-A receptor 69.7 0.54 1.8E-05 26.4 -1.0 7 59-65 21-27 (41)
12 2l6w_A Beta-type platelet-deri 64.5 1.8 6.3E-05 26.0 0.0 20 63-82 20-39 (39)
13 1oqw_A Fimbrial protein; type 57.1 19 0.00065 23.9 4.6 22 68-89 20-41 (144)
14 1rz2_A Conserved hypothetical 53.9 4.8 0.00017 29.7 1.4 40 53-92 11-54 (254)
15 1waz_A MERF; protein structure 53.8 10 0.00035 23.5 2.6 12 68-79 33-44 (46)
16 1cd1_A CD1, MCD1D.1; immunolog 50.7 3.3 0.00011 31.1 0.0 9 71-79 302-310 (315)
17 2l9u_A Receptor tyrosine-prote 49.7 25 0.00084 21.2 3.8 18 60-79 17-34 (40)
18 1scf_A Stem cell factor; steel 49.2 3.6 0.00012 33.2 0.0 25 55-79 217-241 (273)
19 2h3o_A MERF; membrane protein, 48.5 15 0.0005 23.7 2.8 12 68-79 45-56 (61)
20 2hi2_A Fimbrial protein; type 48.4 15 0.00053 24.5 3.1 21 69-89 21-41 (158)
21 3sok_A Fimbrial protein; pilus 47.0 36 0.0012 23.0 4.8 31 56-88 10-40 (151)
22 3vou_A ION transport 2 domain 46.6 26 0.00089 23.4 4.0 9 74-82 110-118 (148)
23 4b19_A PEPA1; toxin, toxin apo 45.0 16 0.00056 20.8 2.3 17 63-79 11-27 (30)
24 2rdd_B UPF0092 membrane protei 43.4 27 0.00091 19.5 3.1 6 68-73 17-22 (37)
25 1iij_A ERBB-2 receptor protein 41.8 1.4 4.9E-05 25.7 -2.5 26 54-79 10-35 (35)
26 3bxl_B CAM, voltage-dependent 36.7 33 0.0011 19.0 2.7 18 67-84 4-21 (26)
27 3lay_A Zinc resistance-associa 36.1 15 0.00052 26.8 1.6 43 52-94 29-83 (175)
28 3gia_A Uncharacterized protein 35.3 7.2 0.00025 28.8 -0.2 7 71-77 415-421 (444)
29 2knc_B Integrin beta-3; transm 34.1 93 0.0032 19.9 5.9 31 56-86 21-55 (79)
30 2knc_A Integrin alpha-IIB; tra 33.3 29 0.001 21.5 2.4 22 52-73 10-35 (54)
31 3rvy_A ION transport protein; 32.5 20 0.00069 25.7 1.8 13 14-26 160-172 (285)
32 2k9j_B Integrin beta-3; transm 31.6 31 0.0011 20.1 2.2 25 53-77 8-36 (43)
33 2l8s_A Integrin alpha-1; trans 31.3 33 0.0011 21.5 2.4 14 60-73 19-32 (54)
34 2k1a_A Integrin alpha-IIB; sin 30.5 33 0.0011 20.2 2.2 25 51-75 7-32 (42)
35 2k21_A Potassium voltage-gated 30.4 49 0.0017 24.3 3.5 14 75-88 96-109 (138)
36 1q55_A EP-cadherin, C-cadherin 29.7 11 0.00038 32.5 0.0 25 54-79 707-731 (880)
37 3t5x_B 26S proteasome complex 29.1 12 0.0004 24.8 0.0 12 88-99 10-21 (70)
38 3pe5_A Uncharacterized protein 28.9 12 0.0004 30.9 0.0 23 53-75 37-59 (403)
39 2jo1_A Phospholemman; FXYD1, N 27.1 22 0.00076 23.7 1.1 27 57-83 22-48 (72)
40 2kgl_A Mesoderm development ca 27.0 16 0.00055 28.0 0.5 19 81-99 22-40 (195)
41 3oei_C RELK (toxin RV3358); to 24.0 48 0.0016 21.8 2.3 22 71-93 24-45 (96)
42 3kg2_A Glutamate receptor 2; I 23.4 46 0.0016 26.5 2.5 8 55-62 786-793 (823)
43 4h33_A LMO2059 protein; bilaye 22.2 19 0.00063 24.2 -0.0 18 81-98 106-123 (137)
44 3eff_K Voltage-gated potassium 21.8 58 0.002 21.3 2.4 15 88-102 121-135 (139)
45 1pw4_A Glycerol-3-phosphate tr 20.6 1.1E+02 0.0038 21.4 3.7 7 56-62 416-422 (451)
46 2jp3_A FXYD domain-containing 20.5 20 0.00068 23.5 -0.1 27 56-82 22-48 (67)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=94.04 E-value=0.0042 Score=37.98 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=20.8
Q ss_pred CCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 48 GNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 48 ~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
++++.-..-++-|++.+++.+...+=||+||++++
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34444333333356666666677778888877654
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.37 E-value=0.035 Score=33.69 Aligned_cols=34 Identities=3% Similarity=-0.081 Sum_probs=22.1
Q ss_pred CCCCceeehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 48 GNTGAKVGIVLLGLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 48 ~~tg~~v~ii~lg~va~~~~~~~~yK~WqkkKRe 81 (105)
++++.-..-|+-|++.+++.++..+=||+||+++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 4555544445556777777777777888887654
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=91.72 E-value=0.26 Score=32.28 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREEQYARLL 88 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~l 88 (105)
.++.|++++.+.++.++|++..-+..++++||-
T Consensus 16 gvi~gilliGllllliwk~~~~i~DrrE~~kFE 48 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLITIHDRKEFAKFE 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666777554444444444443
No 4
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=86.36 E-value=0.14 Score=32.35 Aligned_cols=25 Identities=52% Similarity=0.731 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 034055 69 FFLFKLWQKKKREEQYARLLKLFEED 94 (105)
Q Consensus 69 ~~~yK~WqkkKRe~q~AR~lKLFEed 94 (105)
|-+||-+- |+|++++..++|+|||=
T Consensus 10 felfkey~-k~r~~~he~l~k~~~el 34 (50)
T 3qf7_D 10 FELFKEYL-KKREENHEKLLKILDEL 34 (50)
T ss_dssp HHHHHHHH-HHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhhHHHHHHHHHHH
Confidence 44677665 57999999999999863
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=84.88 E-value=0.38 Score=27.98 Aligned_cols=19 Identities=47% Similarity=0.737 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 60 g~va~~~~~~~~yK~Wqkk 78 (105)
+++.+..+.|.+|||-|||
T Consensus 14 alltflafgfwlfkylqkk 32 (32)
T 2lx0_A 14 ALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4444556677788888875
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=84.36 E-value=0.27 Score=29.96 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=16.1
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~WqkkKR 80 (105)
.+..+.+|++.+++.++..+=||+||+.
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 3555666765555555555556666544
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=82.10 E-value=0.31 Score=28.39 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=14.7
Q ss_pred CceeehhHHHH-HHHHHHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGL-VAVGLFSFFLFKLWQKK 78 (105)
Q Consensus 51 g~~v~ii~lg~-va~~~~~~~~yK~Wqkk 78 (105)
|-.+.-|.+|. +.+++....+|-+|+||
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 33344444444 34555556667677654
No 8
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=81.41 E-value=2.9 Score=27.46 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=32.8
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ 99 (105)
.+-.-+++.+++.+++-++||+---..|.+.||.|.|=++-.+|.|.
T Consensus 16 ~lr~~i~~a~~lsl~~~~~~k~~v~~pRK~aYadFYknYD~~k~fer 62 (73)
T 1v54_I 16 RLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHH
Confidence 34444555556666666777776666667789999999988887764
No 9
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=75.51 E-value=0.57 Score=41.00 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEED 94 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEed 94 (105)
+++.+.++++...+|++|+||+.-+++.|+++-.+=|
T Consensus 518 ~~~~~~~~~a~~~~~~~~k~~~~~~~ydk~~~~~~y~ 554 (581)
T 2j5l_A 518 ASSAAVAVLATILMVYLYKRKGNAEKYDKMDQPQHYG 554 (581)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchhhhcchhccC
Confidence 3344444445555666998888888899988766544
No 10
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=71.50 E-value=0.81 Score=35.33 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHH
Q 034055 65 GLFSFFLFKLWQ-KKK 79 (105)
Q Consensus 65 ~~~~~~~yK~Wq-kkK 79 (105)
++++++++-+|+ ||+
T Consensus 298 ~~~~~~~~~~~~~k~~ 313 (348)
T 1s7q_A 298 VTGAVVAFVMKMRRRN 313 (348)
T ss_dssp ----------------
T ss_pred hheeEEEEEEEEEEec
Confidence 334455677898 554
No 11
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=69.73 E-value=0.54 Score=26.42 Aligned_cols=7 Identities=29% Similarity=0.468 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 034055 59 LGLVAVG 65 (105)
Q Consensus 59 lg~va~~ 65 (105)
.|++.++
T Consensus 21 ~Gv~ll~ 27 (41)
T 2k9y_A 21 VGVVLLL 27 (41)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 12
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=64.47 E-value=1.8 Score=26.01 Aligned_cols=20 Identities=40% Similarity=0.502 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkKRe~ 82 (105)
.+++...+++-.||||-|=|
T Consensus 20 i~iisLIiLi~~w~qKPrYe 39 (39)
T 2l6w_A 20 LTIISLIILIMLWQKKPRYE 39 (39)
Confidence 44555667888999998743
No 13
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=57.09 E-value=19 Score=23.91 Aligned_cols=22 Identities=0% Similarity=0.027 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 034055 68 SFFLFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q~AR~lK 89 (105)
++-.|.-|+++.|..+..+.++
T Consensus 20 a~p~~~~~~~~~~~~~~~~~~~ 41 (144)
T 1oqw_A 20 AIPQYQNYVARSEGASALASVN 41 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666665555444443
No 14
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=53.94 E-value=4.8 Score=29.73 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=8.9
Q ss_pred eeehhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhc
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLW----QKKKREEQYARLLKLFE 92 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~W----qkkKRe~q~AR~lKLFE 92 (105)
|++-.++-++++++++|.+|.+| +-++.++....+-+...
T Consensus 11 k~i~~lli~i~l~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 54 (254)
T 1rz2_A 11 IFFQRILTVVFLGTFFYSVYELGDIFMDYYENRKVMAEAQNIYE 54 (254)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444445555666666666 33444455556666663
No 15
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=53.78 E-value=10 Score=23.46 Aligned_cols=12 Identities=8% Similarity=0.465 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKK 79 (105)
Q Consensus 68 ~~~~yK~WqkkK 79 (105)
+...|-+|+|+|
T Consensus 33 ~lt~ya~~r~~~ 44 (46)
T 1waz_A 33 GLTIYAIQRKRQ 44 (46)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 455799999775
No 16
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=50.72 E-value=3.3 Score=31.08 Aligned_cols=9 Identities=0% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 034055 71 LFKLWQKKK 79 (105)
Q Consensus 71 ~yK~WqkkK 79 (105)
++-+|++++
T Consensus 302 ~~~~~~~~~ 310 (315)
T 1cd1_A 302 YYIWRRRSA 310 (315)
T ss_dssp ---------
T ss_pred HhheehhcC
Confidence 444455443
No 17
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=49.73 E-value=25 Score=21.16 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkK 79 (105)
.++.+++++ .|-||+-++
T Consensus 17 ~vif~~lg~--tflywrgrr 34 (40)
T 2l9u_A 17 VVIFMMLGG--TFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHhCc--eeEEEcccc
Confidence 334444444 456798654
No 18
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=49.19 E-value=3.6 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.289 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 55 GIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 55 ~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
.+++.++..++++..++--||.||.
T Consensus 217 ~~~l~al~slvigf~~ga~~wk~k~ 241 (273)
T 1scf_A 217 AMALPALFSLIIGFAFGALYWKKRQ 241 (273)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3334455433334334445698887
No 19
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=48.46 E-value=15 Score=23.69 Aligned_cols=12 Identities=8% Similarity=0.465 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKK 79 (105)
Q Consensus 68 ~~~~yK~WqkkK 79 (105)
++..|-+|+|||
T Consensus 45 gl~~Y~~~r~~~ 56 (61)
T 2h3o_A 45 GLTIYAIQRKRQ 56 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 555677777664
No 20
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=48.39 E-value=15 Score=24.49 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034055 69 FFLFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 69 ~~~yK~WqkkKRe~q~AR~lK 89 (105)
+-.|.-++++.|+.+..+.++
T Consensus 21 ~p~~~~~~~~~~~~~~~~~~~ 41 (158)
T 2hi2_A 21 LPAYQDYTARAQVSEAILLAE 41 (158)
T ss_dssp TTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhHHHHH
Confidence 335655666666555544443
No 21
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=47.00 E-value=36 Score=23.00 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREEQYARLL 88 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~l 88 (105)
++++|+++.+ ++-.|.-|+++.|..+....+
T Consensus 10 iaIigiLaai--a~p~~~~~~~~~~~~~~~~~~ 40 (151)
T 3sok_A 10 VAIIGILAAF--AIPAYNDYIARSQAAEGLTLA 40 (151)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 334455555555444433333
No 22
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=46.57 E-value=26 Score=23.40 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 034055 74 LWQKKKREE 82 (105)
Q Consensus 74 ~WqkkKRe~ 82 (105)
+|++++++.
T Consensus 110 ~~~~~~~~~ 118 (148)
T 3vou_A 110 ILSNRKKET 118 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455554443
No 23
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=45.02 E-value=16 Score=20.79 Aligned_cols=17 Identities=12% Similarity=0.499 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034055 63 AVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 63 a~~~~~~~~yK~WqkkK 79 (105)
++.++.+.+|.||-+++
T Consensus 11 visGcivalF~hWL~~r 27 (30)
T 4b19_A 11 VISGCAIAFFSYWLSRR 27 (30)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34566778899998875
No 24
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=43.41 E-value=27 Score=19.48 Aligned_cols=6 Identities=17% Similarity=0.788 Sum_probs=2.4
Q ss_pred HHHHHH
Q 034055 68 SFFLFK 73 (105)
Q Consensus 68 ~~~~yK 73 (105)
-|++++
T Consensus 17 YFl~iR 22 (37)
T 2rdd_B 17 YFMILR 22 (37)
T ss_dssp HHHTHH
T ss_pred HHHHhh
Confidence 344443
No 25
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=41.84 E-value=1.4 Score=25.72 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=14.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
|....+|++.+++.+....=||+|++
T Consensus 10 IaagVvglll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHCC
T ss_pred eHHHHHHHHHHHHHHHHhheEEeecC
Confidence 44445565555555555666787763
No 26
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=36.65 E-value=33 Score=19.00 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034055 67 FSFFLFKLWQKKKREEQY 84 (105)
Q Consensus 67 ~~~~~yK~WqkkKRe~q~ 84 (105)
+++..|-||++-|..++|
T Consensus 4 Aa~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQR 21 (26)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 456788888765443333
No 27
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.10 E-value=15 Score=26.83 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=10.4
Q ss_pred ceeehhHHHHHHHH--HHHHHHHHHHHHH----HH------HHHHHHHHhhhccc
Q 034055 52 AKVGIVLLGLVAVG--LFSFFLFKLWQKK----KR------EEQYARLLKLFEED 94 (105)
Q Consensus 52 ~~v~ii~lg~va~~--~~~~~~yK~Wqkk----KR------e~q~AR~lKLFEed 94 (105)
+|++|+++++.+++ ..+.+++..|-+- +. +|||+.+=+++++-
T Consensus 29 kk~~la~~al~~l~l~s~~A~A~g~~~~g~gm~~q~~LnLT~EQq~ql~~I~~e~ 83 (175)
T 3lay_A 29 NKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPLTTEQQATAQKIYDDY 83 (175)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCccccccccCCHHHHHHHHHHHHHH
Confidence 44455554444333 3345565555322 22 67888887777654
No 28
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=35.25 E-value=7.2 Score=28.79 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 034055 71 LFKLWQK 77 (105)
Q Consensus 71 ~yK~Wqk 77 (105)
.|.+|+|
T Consensus 415 ~~~~~~~ 421 (444)
T 3gia_A 415 FEIIYRK 421 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 29
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.15 E-value=93 Score=19.95 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLF----KLWQKKKREEQYAR 86 (105)
Q Consensus 56 ii~lg~va~~~~~~~~y----K~WqkkKRe~q~AR 86 (105)
|+++|++++.+.-+..+ |=|+|-.+|+++++
T Consensus 21 illiGllllliwk~~~~i~DrrE~~kFEkE~~~~~ 55 (79)
T 2knc_B 21 ILLIGLAALLIWKLLITIHDRKEFAKFEEERARAK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555444433222 23444445555554
No 30
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.31 E-value=29 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=10.2
Q ss_pred ceeehhHH----HHHHHHHHHHHHHH
Q 034055 52 AKVGIVLL----GLVAVGLFSFFLFK 73 (105)
Q Consensus 52 ~~v~ii~l----g~va~~~~~~~~yK 73 (105)
..+-||++ |++.+++..+.+||
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 33344444555554
No 31
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=32.47 E-value=20 Score=25.69 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=7.8
Q ss_pred HHHHHHhhhhhcc
Q 034055 14 LLISSICLQFIPA 26 (105)
Q Consensus 14 l~~~si~lqf~~g 26 (105)
++++.++.+++.|
T Consensus 160 ~~fa~~g~~~f~~ 172 (285)
T 3rvy_A 160 YIFAIMATQLFGE 172 (285)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCc
Confidence 3455566677654
No 32
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=31.62 E-value=31 Score=20.09 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=12.2
Q ss_pred eeehhHHHHH----HHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLV----AVGLFSFFLFKLWQK 77 (105)
Q Consensus 53 ~v~ii~lg~v----a~~~~~~~~yK~Wqk 77 (105)
++..|.+|++ ++.+.....+|++..
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445554443 344444555665543
No 33
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.31 E-value=33 Score=21.47 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFK 73 (105)
Q Consensus 60 g~va~~~~~~~~yK 73 (105)
|++.+++..+.+||
T Consensus 19 GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 19 GLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555554
No 34
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=30.53 E-value=33 Score=20.22 Aligned_cols=25 Identities=20% Similarity=0.595 Sum_probs=10.2
Q ss_pred CceeehhHHHHH-HHHHHHHHHHHHH
Q 034055 51 GAKVGIVLLGLV-AVGLFSFFLFKLW 75 (105)
Q Consensus 51 g~~v~ii~lg~v-a~~~~~~~~yK~W 75 (105)
+.++-+|+++++ .+.+.+...|-+|
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554333 3333333344444
No 35
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=30.42 E-value=49 Score=24.33 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 034055 75 WQKKKREEQYARLL 88 (105)
Q Consensus 75 WqkkKRe~q~AR~l 88 (105)
|++|.++.=|||.+
T Consensus 96 W~ek~K~y~q~~~l 109 (138)
T 2k21_A 96 WQEKDKAYVQARVL 109 (138)
T ss_dssp CCSCCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhh
Confidence 44333333344444
No 36
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=29.72 E-value=11 Score=32.52 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=0.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKK 79 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkK 79 (105)
+++||+|++++++ +++++-.|++|+
T Consensus 707 ii~il~~~~~ll~-~~ll~~~~~~~~ 731 (880)
T 1q55_A 707 ILVILGSVLALLI-LFLLLLLFLKRK 731 (880)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHH-HHHHHHhhhhhc
Confidence 3444555554433 333344454443
No 37
>3t5x_B 26S proteasome complex subunit DSS1; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} PDB: 1iyj_A 1mje_B 1miu_B
Probab=29.12 E-value=12 Score=24.81 Aligned_cols=12 Identities=67% Similarity=0.911 Sum_probs=0.0
Q ss_pred Hhhhccchhhhh
Q 034055 88 LKLFEEDDELEV 99 (105)
Q Consensus 88 lKLFEedDdle~ 99 (105)
++++||||+.|+
T Consensus 10 ~~~lEeDDEFEe 21 (70)
T 3t5x_B 10 LGLLEEDDEFEE 21 (70)
T ss_dssp ------------
T ss_pred cCcccccccccc
Confidence 678999999875
No 38
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=28.86 E-value=12 Score=30.87 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred eeehhHHHHHHHHHHHHHHHHHH
Q 034055 53 KVGIVLLGLVAVGLFSFFLFKLW 75 (105)
Q Consensus 53 ~v~ii~lg~va~~~~~~~~yK~W 75 (105)
.|+|.|+.+.++++.+++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ 59 (403)
T 3pe5_A 37 IIIILCVVFSGLGGVIVYAHGLL 59 (403)
T ss_dssp -----------------------
T ss_pred EEEEehHHHHhhhHHHHHHHHHH
Confidence 34444455567777788888888
No 39
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=27.10 E-value=22 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.173 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 57 VLLGLVAVGLFSFFLFKLWQKKKREEQ 83 (105)
Q Consensus 57 i~lg~va~~~~~~~~yK~WqkkKRe~q 83 (105)
|+-+++.+++..+.+.+.++-|..++.
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~ 48 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQ 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCC
Confidence 344444444555556666655554443
No 40
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=27.05 E-value=16 Score=27.96 Aligned_cols=19 Identities=42% Similarity=0.756 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhccchhhhh
Q 034055 81 EEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 81 e~q~AR~lKLFEedDdle~ 99 (105)
+.+-.||++-+|||||+|+
T Consensus 22 daDLe~L~~qWEedDelEe 40 (195)
T 2kgl_A 22 DADMARLLEQWEKDDDIEE 40 (195)
T ss_dssp HHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhcCCCCc
Confidence 6788899999999999874
No 41
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=24.02 E-value=48 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 034055 71 LFKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 71 ~yK~WqkkKRe~q~AR~lKLFEe 93 (105)
-|++|||.-+ ..+.|+.++.++
T Consensus 24 dl~~w~kldk-~~~krI~~~I~~ 45 (96)
T 3oei_C 24 DFLFWLAADR-KTARRITRLIGE 45 (96)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHH
T ss_pred HHHHHHhcCH-HHHHHHHHHHHH
Confidence 5778988755 456788877754
No 42
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=23.35 E-value=46 Score=26.53 Aligned_cols=8 Identities=13% Similarity=-0.313 Sum_probs=3.8
Q ss_pred ehhHHHHH
Q 034055 55 GIVLLGLV 62 (105)
Q Consensus 55 ~ii~lg~v 62 (105)
++++++++
T Consensus 786 ~f~il~~g 793 (823)
T 3kg2_A 786 VFYILVGG 793 (823)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44445444
No 43
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=22.17 E-value=19 Score=24.22 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccchhhh
Q 034055 81 EEQYARLLKLFEEDDELE 98 (105)
Q Consensus 81 e~q~AR~lKLFEedDdle 98 (105)
.++..+..++..+.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 106 TQRANKITQLISETPDLT 123 (137)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 334445666666655543
No 44
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=21.78 E-value=58 Score=21.30 Aligned_cols=15 Identities=40% Similarity=0.304 Sum_probs=9.0
Q ss_pred HhhhccchhhhhhcC
Q 034055 88 LKLFEEDDELEVELG 102 (105)
Q Consensus 88 lKLFEedDdle~ELG 102 (105)
-++-++-|++|.++.
T Consensus 121 ~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 121 RALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566667776654
No 45
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.64 E-value=1.1e+02 Score=21.40 Aligned_cols=7 Identities=0% Similarity=-0.235 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 034055 56 IVLLGLV 62 (105)
Q Consensus 56 ii~lg~v 62 (105)
+++.+++
T Consensus 416 ~~~~~~~ 422 (451)
T 1pw4_A 416 FMVMIGG 422 (451)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 46
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.50 E-value=20 Score=23.52 Aligned_cols=27 Identities=11% Similarity=0.237 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 56 IVLLGLVAVGLFSFFLFKLWQKKKREE 82 (105)
Q Consensus 56 ii~lg~va~~~~~~~~yK~WqkkKRe~ 82 (105)
+|+-+|+.+++..+.+.+.++-|+++.
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~~qk 48 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRRNHT 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHHcCcccccCCCC
Confidence 344455555555666666677666443
Done!