Query 034055
Match_columns 105
No_of_seqs 34 out of 36
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 15:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034055.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034055hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 64.3 7 0.00051 22.6 4.8 30 54-85 8-37 (158)
2 d1v54i_ f.23.3.1 (I:) Mitochon 57.6 9.7 0.0007 23.8 4.8 42 58-99 21-62 (73)
3 d1ntva_ b.55.1.2 (A:) Disabled 35.9 13 0.00093 23.1 2.7 16 68-83 136-151 (152)
4 d1ojha_ a.214.1.1 (A:) Phycobi 29.5 9 0.00065 22.7 1.0 19 75-93 18-36 (52)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 25.9 24 0.0018 21.2 2.7 22 60-81 37-58 (100)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 22.9 37 0.0027 17.6 2.7 12 58-69 2-13 (27)
7 d1ppjd2 f.23.11.1 (D:196-241) 16.7 70 0.0051 17.6 3.2 19 62-80 13-31 (46)
8 d1fc2c_ a.8.1.1 (C:) Immunoglo 15.0 15 0.0011 21.1 -0.1 14 23-36 26-39 (44)
9 d2vv5a3 f.34.1.1 (A:27-112) Me 14.7 79 0.0057 17.7 3.2 36 54-89 9-44 (86)
10 d2a6sa1 d.298.1.1 (A:1-83) Tox 14.6 35 0.0026 20.6 1.6 21 72-93 13-33 (83)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=64.32 E-value=7 Score=22.65 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=15.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYA 85 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~A 85 (105)
|+|+++|++|.++ +-.|.-|+++-|..+-.
T Consensus 8 VViaIIgILaaia--~P~~~~~~~~a~~~~~~ 37 (158)
T d2pila_ 8 IVIAIVGILAAVA--LPAYQDYTARAQVSEAI 37 (158)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3445555554443 44566676665544443
No 2
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=57.61 E-value=9.7 Score=23.82 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 034055 58 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 99 (105)
Q Consensus 58 ~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lKLFEedDdle~ 99 (105)
++|..++.+++.++||+---.-|.+.+|-|-|-+.-.-|.|.
T Consensus 21 l~~a~~lsl~~a~~~Kf~v~eprKkaYadFYknYDa~KdFe~ 62 (73)
T d1v54i_ 21 IVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHccchhhhHHH
Confidence 445555666777889999999999999999998877766664
No 3
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.87 E-value=13 Score=23.11 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034055 68 SFFLFKLWQKKKREEQ 83 (105)
Q Consensus 68 ~~~~yK~WqkkKRe~q 83 (105)
.-..|+.|||++.|+|
T Consensus 136 F~~a~~~~~~~~~~~~ 151 (152)
T d1ntva_ 136 FQLIYELKQREELEKK 151 (152)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhHHHHhhc
Confidence 3348899998887765
No 4
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=29.46 E-value=9 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 034055 75 WQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 75 WqkkKRe~q~AR~lKLFEe 93 (105)
=++.-|||.|.++++|+|-
T Consensus 18 V~~mS~EQAqdfLv~Lykq 36 (52)
T d1ojha_ 18 VQNMSHDQAKDFLVKLYEQ 36 (52)
T ss_dssp HHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHH
Confidence 3677899999999999873
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=25.93 E-value=24 Score=21.16 Aligned_cols=22 Identities=9% Similarity=0.443 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034055 60 GLVAVGLFSFFLFKLWQKKKRE 81 (105)
Q Consensus 60 g~va~~~~~~~~yK~WqkkKRe 81 (105)
+++.+++..+..|-.|++++|.
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccC
Confidence 4444455556677778776653
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.85 E-value=37 Score=17.57 Aligned_cols=12 Identities=42% Similarity=0.492 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 034055 58 LLGLVAVGLFSF 69 (105)
Q Consensus 58 ~lg~va~~~~~~ 69 (105)
.+|++.+.++..
T Consensus 2 vlgli~~tl~gl 13 (27)
T d2e74g1 2 VLGLVFATLGGL 13 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 456665555544
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.71 E-value=70 Score=17.63 Aligned_cols=19 Identities=5% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034055 62 VAVGLFSFFLFKLWQKKKR 80 (105)
Q Consensus 62 va~~~~~~~~yK~WqkkKR 80 (105)
+.+++..+.+.-||.|+++
T Consensus 13 v~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 13 MLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
No 8
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=15.03 E-value=15 Score=21.08 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=0.0
Q ss_pred hhccccCCCCCCcC
Q 034055 23 FIPAISDDPSSTKK 36 (105)
Q Consensus 23 f~~gls~d~s~sk~ 36 (105)
||-.|-||||.|.+
T Consensus 26 fI~SLkDDPsqSan 39 (44)
T d1fc2c_ 26 FIQSLKDDPSQSAN 39 (44)
T ss_dssp HHHHHHHCTTTTTC
T ss_pred HHHHhccCchhhHH
No 9
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=14.67 E-value=79 Score=17.72 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=0.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034055 54 VGIVLLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 89 (105)
Q Consensus 54 v~ii~lg~va~~~~~~~~yK~WqkkKRe~q~AR~lK 89 (105)
+++++++....-...-..-|.-+|++.++...+++.
T Consensus 9 l~il~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~ 44 (86)
T d2vv5a3 9 LAIIIVGLIIARMISNAVNRLMISRKIDATVADFLS 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
No 10
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=14.62 E-value=35 Score=20.62 Aligned_cols=21 Identities=14% Similarity=0.540 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 034055 72 FKLWQKKKREEQYARLLKLFEE 93 (105)
Q Consensus 72 yK~WqkkKRe~q~AR~lKLFEe 93 (105)
|++||+.-+ +-..|+.+|.++
T Consensus 13 ~~~~~~~d~-k~~kkI~~ll~~ 33 (83)
T d2a6sa1 13 YLYWQETDK-RIVKKINELIKD 33 (83)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHhCH-HHHHHHHHHHHH
Done!