BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034056
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGV-SIAN 84
V+ VQ + + KAE+L+ EAS G+Q+VV PE F GY T V IA
Sbjct: 2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQ 61
Query: 85 RTAKGK 90
+ +G+
Sbjct: 62 KIPEGE 67
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
V+ +Q + KAE+L+ EAS G+++VV PE F GY
Sbjct: 2 VKVGYIQXEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGY 48
>pdb|1A8D|A Chain A, Tetanus Toxin C Fragment
pdb|1AF9|A Chain A, Tetanus Neurotoxin C Fragment
Length = 452
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67
+++ STI N LD ++++ SG+ S V+ +P+A
Sbjct: 17 ILKKSTILN-----LDINNDIISDISGFNSSVITYPDA 49
>pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Complexed With Lactose
pdb|1YXW|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
pdb|1YYN|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
Length = 441
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67
+++ STI N LD ++++ SG+ S V+ +P+A
Sbjct: 6 ILKKSTILN-----LDINNDIISDISGFNSSVITYPDA 38
>pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67
+++ STI N LD ++++ SG+ S V+ +P+A
Sbjct: 37 ILKKSTILN-----LDINNDIISDISGFNSSVITYPDA 69
>pdb|3HMY|A Chain A, Crystal Structure Of Hcr/t Complexed With Gt2
pdb|3HN1|A Chain A, Crystal Structure Of HcrT COMPLEXED WITH GT2 AND LACTOSE
Length = 450
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67
+++ STI N LD ++++ SG+ S V+ +P+A
Sbjct: 15 ILKKSTILN-----LDINNDIISDISGFNSSVITYPDA 47
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With
N-Acetyl- Galactosamine
Length = 469
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67
+++ STI N LD ++++ SG+ S V+ +P+A
Sbjct: 34 ILKKSTILN-----LDINNDIISDISGFNSSVITYPDA 66
>pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Sialic
Acid
Length = 444
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67
+++ STI N LD ++++ SG+ S V+ +P+A
Sbjct: 9 ILKKSTILN-----LDINNDIISDISGFNSSVITYPDA 41
>pdb|1DIW|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With
Galactose
Length = 441
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67
+++ STI N LD ++++ SG+ S V+ +P+A
Sbjct: 6 ILKKSTILN-----LDINNDIISDISGFNSSVITYPDA 38
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 5 ASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEAS 55
A+ P+L EVD+ + A ++ T+ +A T+F P+ D RL+ +
Sbjct: 112 AATGVPVLIEVDL---AGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGT 159
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 5 ASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEAS 55
A+ P+L EVD+ + A ++ T+ +A T+F P+ D RL+ +
Sbjct: 109 AATGVPVLIEVDL---AGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGT 156
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
Nesterenkonia Sp
Length = 283
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
S +R ++Q + D LD + A AS G+Q+++ PE F GY
Sbjct: 19 SHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGY 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,879,301
Number of Sequences: 62578
Number of extensions: 103142
Number of successful extensions: 207
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 16
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)