BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034056
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42966|NRL4B_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4B OS=Nicotiana tabacum
GN=NIT4B PE=2 SV=1
Length = 348
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 3/108 (2%)
Query: 1 MAMVAS---DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
MA+V + + P+ AEVDMG +SS TVRATVVQASTIF DTPATLDKAERLLAEA+ Y
Sbjct: 1 MALVPTPVVNEGPMFAEVDMGDNSSTPTVRATVVQASTIFYDTPATLDKAERLLAEAASY 60
Query: 58 GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
G+Q+VVFPEAFIGGYPRG+ FGVSI NRTAKGKE+FRKYHASAIDVPG
Sbjct: 61 GAQLVVFPEAFIGGYPRGSTFGVSIGNRTAKGKEEFRKYHASAIDVPG 108
>sp|Q42965|NRL4A_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum
GN=NIT4A PE=2 SV=1
Length = 349
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 93/108 (86%), Gaps = 3/108 (2%)
Query: 1 MAMV---ASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
MA+V A + PL AEVDMG +SS TVRATVVQASTIF DTPATL KAERLLAEA+ Y
Sbjct: 1 MALVPTPAVNEGPLFAEVDMGDNSSTPTVRATVVQASTIFYDTPATLVKAERLLAEAASY 60
Query: 58 GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
G+Q+VVFPEAFIGGYPRG+ FGVSI NRTAKGKE+FRKYHASAIDVPG
Sbjct: 61 GAQLVVFPEAFIGGYPRGSTFGVSIGNRTAKGKEEFRKYHASAIDVPG 108
>sp|Q6H849|NRL4_ORYSJ Bifunctional nitrilase/nitrile hydratase NIT4 OS=Oryza sativa
subsp. japonica GN=NIT4 PE=2 SV=1
Length = 362
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/114 (68%), Positives = 93/114 (81%), Gaps = 9/114 (7%)
Query: 1 MAMVASDNA---PLLAEVDM--GTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEAS 55
MAMV S + P++AEV+M G DS A+TVRATVVQAST+F DTPATLDKAERL+ EA+
Sbjct: 1 MAMVPSGSGGGPPVIAEVEMNGGADSGAATVRATVVQASTVFYDTPATLDKAERLIEEAA 60
Query: 56 GYGSQVVVFPEAFIGGYPRGTNFG----VSIANRTAKGKEDFRKYHASAIDVPG 105
GYGSQ+VVFPEAF+GGYPRG+ FG +SI N KGKE+FRKYHA+AI+VPG
Sbjct: 61 GYGSQLVVFPEAFVGGYPRGSTFGFGANISIGNPKDKGKEEFRKYHAAAIEVPG 114
>sp|P46011|NRL4_ARATH Bifunctional nitrilase/nitrile hydratase NIT4 OS=Arabidopsis
thaliana GN=NIT4 PE=1 SV=1
Length = 355
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 82/95 (86%)
Query: 11 LLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIG 70
+ E+DM S+S VRATVVQAST+F DTPATLDKAERLL+EA+ GSQ+VVFPEAFIG
Sbjct: 21 IFPEIDMSAGDSSSIVRATVVQASTVFYDTPATLDKAERLLSEAAENGSQLVVFPEAFIG 80
Query: 71 GYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
GYPRG+ F ++I +RTAKG++DFRKYHASAIDVPG
Sbjct: 81 GYPRGSTFELAIGSRTAKGRDDFRKYHASAIDVPG 115
>sp|P32962|NRL2_ARATH Nitrilase 2 OS=Arabidopsis thaliana GN=NIT2 PE=1 SV=1
Length = 339
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 75/103 (72%), Gaps = 6/103 (5%)
Query: 3 MVASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVV 62
M S+N P +S++ VRAT+VQAST++NDTPATL+KA + + EA+ GS++V
Sbjct: 1 MSTSENTPF------NGVASSTIVRATIVQASTVYNDTPATLEKANKFIVEAASKGSELV 54
Query: 63 VFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
VFPEAFIGGYPRG FG+ + +G+++FRKYHASAI VPG
Sbjct: 55 VFPEAFIGGYPRGFRFGLGVGVHNEEGRDEFRKYHASAIKVPG 97
>sp|P46010|NRL3_ARATH Nitrilase 3 OS=Arabidopsis thaliana GN=NIT3 PE=1 SV=1
Length = 346
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 17 MGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76
+G D S STVR T+VQ+ST++NDTPATLDKAE+ + EA+ G+++V+FPEAFIGGYPRG
Sbjct: 17 IGVDPS-STVRVTIVQSSTVYNDTPATLDKAEKFIVEAASKGAKLVLFPEAFIGGYPRGF 75
Query: 77 NFGVSIANRTAKGKEDFRKYHASAIDVPG 105
FG+++ +G+++FR YHASAI VPG
Sbjct: 76 RFGLAVGVHNEEGRDEFRNYHASAIKVPG 104
>sp|P32961|NRL1_ARATH Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1 PE=1 SV=2
Length = 346
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 69/83 (83%)
Query: 23 ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSI 82
++TVR T+VQ+ST++NDTPAT+DKAE+ + EA+ G+++V+FPE FIGGYPRG FG+++
Sbjct: 22 STTVRVTIVQSSTVYNDTPATIDKAEKYIVEAASKGAELVLFPEGFIGGYPRGFRFGLAV 81
Query: 83 ANRTAKGKEDFRKYHASAIDVPG 105
+G+++FRKYHASAI VPG
Sbjct: 82 GVHNEEGRDEFRKYHASAIHVPG 104
>sp|P40447|NIT1_YEAST Putative nitrilase-like protein NIT1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NIT1 PE=5 SV=1
Length = 199
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 31 VQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGK 90
+Q + T TL K E G+++VV PEA +GGYP+G+NFGV + R +G+
Sbjct: 9 LQIGSCPGSTKDTLKKILSYEKEIKESGAKLVVIPEATLGGYPKGSNFGVYLGYRLQEGR 68
Query: 91 EDFRKYHASAIDV 103
E++ KY A AI++
Sbjct: 69 EEYAKYLAEAIEI 81
>sp|P82605|NRL_BACSX Nitrilase OS=Bacillus sp. (strain OxB-1) GN=nit PE=1 SV=2
Length = 339
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
S+ R VQAS + D AT+DK RL+ EA+ G++V+ FPEAFI GYP
Sbjct: 2 SNYPKYRVAAVQASPVLLDLDATIDKTCRLVDEAAANGAKVIAFPEAFIPGYP 54
>sp|Q03217|NRL2_RHORH Aliphatic nitrilase OS=Rhodococcus rhodochrous GN=nitA PE=1 SV=2
Length = 366
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
+T + VQA ++ D T+DK ++AEA+ G ++V FPE FI GYP
Sbjct: 6 NTFKVAAVQAQPVWFDAAKTVDKTVSIIAEAARNGCELVAFPEVFIPGYP 55
>sp|Q02068|NRL1_RHORH Aliphatic nitrilase OS=Rhodococcus rhodochrous PE=1 SV=1
Length = 383
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFG 79
V+ VQA + D AT+DKA + EA+ G++ + FPE +I GYP G
Sbjct: 13 VKVATVQAEPVILDADATIDKAIGFIEEAAKNGAEFLAFPEVWIPGYPYWAWIG 66
>sp|P10045|NRLB_KLEPO Nitrilase, bromoxynil-specific OS=Klebsiella pneumoniae subsp.
ozaenae GN=bxn PE=1 SV=1
Length = 349
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
+T +A VQA ++ D AT DK L+A+A+ G+Q+V FPE +I GYP
Sbjct: 3 TTFKAAAVQAEPVWMDAAATADKTVTLVAKAAAAGAQLVAFPELWIPGYP 52
>sp|Q9X0Y0|NADE2_THEMA Probable glutamine-dependent NAD(+) synthetase OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=nadE2 PE=3 SV=1
Length = 576
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
+R T+ Q + D L KA L A GS ++VFPE F+ GYP
Sbjct: 4 LRVTLAQLNPTLGDFEGNLKKAIEALRVAEDRGSDLLVFPELFLPGYP 51
>sp|Q4L5X2|RBFA_STAHJ Ribosome-binding factor A OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rbfA PE=3 SV=1
Length = 116
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 12 LAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGG 71
+ +VD+ D S + V TV+ + NDT LDKA+ + G ++ + PE F
Sbjct: 35 ITDVDLTNDLSQAKVYLTVLGSEKEVNDTFKALDKAKGFIKSELGSRMRLRIVPELFF-E 93
Query: 72 YPRGTNFGVSIANRTAKGKEDFRK 95
Y +G N+ K +D K
Sbjct: 94 YDESIEYG----NKIEKMIQDLHK 113
>sp|Q4VBV9|NIT2_DANRE Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1
Length = 277
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 24 STVRATVVQ--ASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF 78
S R VVQ S I D L +A+ L+ EA+G G++VVV PE F P GT F
Sbjct: 2 SKFRLAVVQLHVSKIKADN---LGRAQTLVKEAAGQGAKVVVLPECF--NSPYGTGF 53
>sp|P20960|NRLA_ALCFA Nitrilase, arylacetone-specific OS=Alcaligenes faecalis PE=1 SV=2
Length = 356
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFG 79
VRA VQA++ D +DK L +A G ++VF E ++ GYP G
Sbjct: 7 VRAAAVQAASPNYDLATGVDKTIELARQARDEGCDLIVFGETWLPGYPFHVWLG 60
>sp|P32964|CYHY_GLOSO Cyanide hydratase OS=Gloeocercospora sorghi GN=CHT PE=3 SV=1
Length = 368
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
+A VV + ++ + + K + EA G +++ FPE +I GYP
Sbjct: 7 KAAVVTSEPVWENLEGGVVKTIEFINEAGKAGCKLIAFPEVWIPGYP 53
>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1
Length = 276
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 44 LDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF 78
L+KA +L+ EA+ G+Q+V PE F P GT +
Sbjct: 21 LNKACKLIKEAAQKGAQIVALPECF--NSPYGTKY 53
>sp|Q4I1J3|PFA5_GIBZE Palmitoyltransferase PFA5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=PFA5 PE=3 SV=1
Length = 507
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 14 EVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERL 50
E+D+ +++S +T+ ATVV+ TI P TL ++ L
Sbjct: 12 ELDLASNTSDTTINATVVKDETIITRPPPTLTRSWSL 48
>sp|A3QDD6|Y1617_SHELP UPF0502 protein Shew_1617 OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=Shew_1617 PE=3 SV=1
Length = 215
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 39 DTPATLDK--AERLLAEASGYGSQVVVFPEAFIG 70
DT A LD +RL+AE SG+GS+VV + F
Sbjct: 52 DTQAALDSLAKKRLVAEQSGFGSRVVKYKHRFCN 85
>sp|Q61T02|KDM5_CAEBR Lysine-specific demethylase rbr-2 OS=Caenorhabditis briggsae
GN=rbr-2 PE=3 SV=2
Length = 1482
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 58 GSQVVVFPEAFIGGYPRGTNFGVSI----ANRTAKGKEDFRKY 96
G V+ FP A+ GY G NF ++ + AKG+E + Y
Sbjct: 594 GEFVITFPRAYHAGYNEGLNFAEAVNFAPIDWLAKGRECVQSY 636
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 38 NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTA 87
N P +D A + SG+ S V+ +PE I G PR G ++ A
Sbjct: 514 NMYPQNVDYAAEMTGGCSGFASNVLNWPEDMILGNPRRAKKGGKLSGADA 563
>sp|Q482U6|RNFD_COLP3 Electron transport complex protein RnfD OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=rnfD PE=3
SV=1
Length = 353
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 20 DSSASTV-----RATVVQASTIFND--TPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
DSSAST+ AT++ A I D T AT +K ++ +G ++V+ GGY
Sbjct: 264 DSSASTMFHWFSGATMLGAFFILTDPVTGATSNKGRIIVGLLAG----LLVYLIRTSGGY 319
Query: 73 PRGTNFGVSIANRTA 87
P G F + + N +A
Sbjct: 320 PDGVAFAILLCNMSA 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,811,745
Number of Sequences: 539616
Number of extensions: 1288021
Number of successful extensions: 2470
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2449
Number of HSP's gapped (non-prelim): 36
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)