Query 034056
Match_columns 105
No_of_seqs 171 out of 1012
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0805 Carbon-nitrogen hydrol 99.8 2.2E-18 4.8E-23 133.3 7.7 83 23-105 15-97 (337)
2 PLN02504 nitrilase 99.7 9.8E-18 2.1E-22 132.7 9.5 99 7-105 5-104 (346)
3 cd07564 nitrilases_CHs Nitrila 99.5 3.3E-13 7.2E-18 103.8 8.5 73 26-103 1-73 (297)
4 COG0388 Predicted amidohydrola 99.4 6.7E-13 1.5E-17 100.4 6.5 52 25-76 2-53 (274)
5 PLN02747 N-carbamolyputrescine 99.4 8.4E-13 1.8E-17 101.1 6.8 54 21-75 2-55 (296)
6 PRK02628 nadE NAD synthetase; 99.4 1.2E-12 2.7E-17 111.5 6.8 61 17-77 4-64 (679)
7 PRK10438 C-N hydrolase family 99.3 2.2E-12 4.7E-17 97.6 6.1 49 25-75 3-51 (256)
8 TIGR03381 agmatine_aguB N-carb 99.3 3.1E-12 6.7E-17 96.3 6.2 49 26-75 1-49 (279)
9 cd07578 nitrilase_1_R1 First n 99.3 4.4E-12 9.5E-17 95.2 6.1 50 26-75 1-50 (258)
10 cd07576 R-amidase_like Pseudom 99.3 5.4E-12 1.2E-16 93.7 6.2 52 27-78 1-52 (254)
11 cd07569 DCase N-carbamyl-D-ami 99.3 5.7E-12 1.2E-16 97.0 6.0 51 24-74 2-54 (302)
12 cd07570 GAT_Gln-NAD-synth Glut 99.3 6.1E-12 1.3E-16 94.1 5.6 49 27-75 1-49 (261)
13 cd07575 Xc-1258_like Xanthomon 99.3 7.4E-12 1.6E-16 93.8 6.0 48 26-74 1-48 (252)
14 cd07568 ML_beta-AS_like mammal 99.3 8.8E-12 1.9E-16 94.7 6.2 52 24-75 2-60 (287)
15 PLN02339 NAD+ synthase (glutam 99.3 6.8E-12 1.5E-16 107.5 5.9 54 24-77 2-55 (700)
16 cd07584 nitrilase_6 Uncharacte 99.2 1.8E-11 3.8E-16 91.5 5.9 49 27-75 1-49 (258)
17 cd07566 ScNTA1_like Saccharomy 99.2 1.9E-11 4.1E-16 95.1 6.1 49 27-75 1-53 (295)
18 cd07573 CPA N-carbamoylputresc 99.2 2.5E-11 5.5E-16 91.7 6.2 49 26-75 1-49 (284)
19 cd07585 nitrilase_7 Uncharacte 99.2 2.8E-11 6E-16 90.5 5.9 50 27-76 1-50 (261)
20 cd07586 nitrilase_8 Uncharacte 99.2 2.5E-11 5.4E-16 91.1 5.6 50 27-76 1-50 (269)
21 cd07587 ML_beta-AS mammalian-l 99.2 3E-11 6.5E-16 96.5 6.3 54 21-74 59-119 (363)
22 cd07572 nit Nit1, Nit 2, and r 99.2 3.1E-11 6.7E-16 90.2 5.9 49 27-76 1-49 (265)
23 cd07583 nitrilase_5 Uncharacte 99.2 3.1E-11 6.8E-16 89.9 5.9 50 27-76 1-50 (253)
24 PRK13981 NAD synthetase; Provi 99.2 2.8E-11 6.2E-16 100.3 5.9 51 26-76 1-51 (540)
25 cd07580 nitrilase_2 Uncharacte 99.2 4.7E-11 1E-15 89.9 6.1 50 27-76 1-50 (268)
26 cd07579 nitrilase_1_R2 Second 99.2 4.4E-11 9.6E-16 91.8 6.0 48 27-75 1-48 (279)
27 cd07574 nitrilase_Rim1_like Un 99.2 2.9E-11 6.2E-16 91.4 4.0 48 26-73 1-49 (280)
28 cd07567 biotinidase_like bioti 99.1 6E-11 1.3E-15 92.7 5.7 51 26-76 1-58 (299)
29 PF00795 CN_hydrolase: Carbon- 99.1 7.8E-11 1.7E-15 83.5 5.0 48 27-74 1-50 (186)
30 cd07581 nitrilase_3 Uncharacte 99.1 9.9E-11 2.1E-15 87.1 5.3 47 28-75 1-47 (255)
31 cd07565 aliphatic_amidase alip 99.1 1.5E-10 3.3E-15 89.3 6.2 49 26-74 1-55 (291)
32 PLN02798 nitrilase 99.1 2.5E-10 5.4E-15 87.3 6.6 54 21-75 6-60 (286)
33 cd07197 nitrilase Nitrilase su 99.1 2.4E-10 5.1E-15 84.1 5.9 50 28-77 1-50 (253)
34 cd07577 Ph0642_like Pyrococcus 99.1 2.6E-10 5.7E-15 85.5 5.4 46 27-75 1-46 (259)
35 PLN00202 beta-ureidopropionase 99.0 6.2E-10 1.3E-14 90.4 5.9 52 23-74 84-142 (405)
36 cd07571 ALP_N-acyl_transferase 99.0 6.4E-10 1.4E-14 84.7 5.3 48 26-73 1-54 (270)
37 PRK13287 amiF formamidase; Pro 99.0 9.2E-10 2E-14 87.0 6.3 52 24-75 12-69 (333)
38 cd07582 nitrilase_4 Uncharacte 98.9 1.8E-09 4E-14 82.8 6.0 49 27-75 2-59 (294)
39 PRK13286 amiE acylamide amidoh 98.8 9.1E-09 2E-13 81.9 5.5 51 24-74 11-67 (345)
40 KOG0806 Carbon-nitrogen hydrol 98.7 2.7E-08 5.7E-13 78.4 5.5 58 25-82 13-70 (298)
41 KOG0807 Carbon-nitrogen hydrol 98.6 1.1E-07 2.3E-12 73.8 6.1 71 25-100 15-86 (295)
42 TIGR00546 lnt apolipoprotein N 98.3 1.1E-06 2.4E-11 70.1 4.7 50 24-74 158-213 (391)
43 PRK00302 lnt apolipoprotein N- 98.0 5.9E-06 1.3E-10 68.1 4.8 48 25-73 219-272 (505)
44 PRK12291 apolipoprotein N-acyl 97.7 8.8E-05 1.9E-09 60.5 5.8 48 26-73 195-248 (418)
45 KOG2303 Predicted NAD synthase 97.0 0.0006 1.3E-08 57.9 3.2 57 22-78 1-57 (706)
46 PRK13825 conjugal transfer pro 96.1 0.0071 1.5E-07 49.2 3.8 33 42-74 206-238 (388)
47 KOG0808 Carbon-nitrogen hydrol 94.0 0.11 2.5E-06 41.3 4.8 52 23-74 71-129 (387)
48 COG0815 Lnt Apolipoprotein N-a 86.4 1.4 3.1E-05 37.2 4.9 50 24-73 226-283 (518)
49 PRK15018 1-acyl-sn-glycerol-3- 73.3 6.3 0.00014 29.9 4.2 33 39-71 120-152 (245)
50 PF01553 Acyltransferase: Acyl 66.3 11 0.00025 24.4 3.8 29 41-69 74-102 (132)
51 smart00563 PlsC Phosphate acyl 65.8 12 0.00025 23.5 3.6 28 41-69 59-86 (118)
52 TIGR00530 AGP_acyltrn 1-acyl-s 62.2 15 0.00033 23.7 3.8 28 43-70 74-101 (130)
53 cd07990 LPLAT_LCLAT1-like Lyso 55.8 20 0.00043 25.6 3.7 28 41-68 85-114 (193)
54 cd07992 LPLAT_AAK14816-like Ly 54.2 19 0.00041 25.9 3.5 26 45-70 97-122 (203)
55 PF10042 DUF2278: Uncharacteri 52.4 21 0.00046 26.9 3.6 31 41-71 118-148 (206)
56 cd07993 LPLAT_DHAPAT-like Lyso 51.4 19 0.00041 26.1 3.1 28 45-72 88-115 (205)
57 PTZ00261 acyltransferase; Prov 45.6 32 0.00069 28.1 3.8 27 43-69 200-226 (355)
58 COG0431 Predicted flavoprotein 44.6 36 0.00078 24.5 3.6 28 45-73 56-83 (184)
59 cd07986 LPLAT_ACT14924-like Ly 42.7 32 0.0007 24.9 3.2 29 42-71 83-111 (210)
60 PF04898 Glu_syn_central: Glut 41.5 31 0.00067 27.4 3.1 60 9-68 100-165 (287)
61 PRK14014 putative acyltransfer 41.3 36 0.00079 26.7 3.4 28 42-69 158-185 (301)
62 cd07988 LPLAT_ABO13168-like Ly 37.5 42 0.00091 23.6 3.0 28 42-71 81-108 (163)
63 PF12340 DUF3638: Protein of u 37.0 86 0.0019 24.1 4.8 44 27-70 100-143 (229)
64 cd07991 LPLAT_LPCAT1-like Lyso 36.8 36 0.00079 24.6 2.7 24 46-69 83-108 (211)
65 KOG2848 1-acyl-sn-glycerol-3-p 36.1 61 0.0013 25.7 3.9 30 39-68 144-173 (276)
66 COG0434 SgcQ Predicted TIM-bar 34.7 1.9E+02 0.0041 22.9 6.3 52 23-74 6-63 (263)
67 PRK11756 exonuclease III; Prov 33.9 41 0.00089 25.0 2.6 24 42-68 13-36 (268)
68 cd07945 DRE_TIM_CMS Leptospira 33.1 72 0.0016 24.7 3.9 35 38-72 108-142 (280)
69 PF03437 BtpA: BtpA family; I 32.1 2.4E+02 0.0052 21.9 6.7 52 24-75 2-59 (254)
70 PF02569 Pantoate_ligase: Pant 31.9 21 0.00046 28.2 0.8 46 31-77 60-108 (280)
71 COG0204 PlsC 1-acyl-sn-glycero 31.2 64 0.0014 23.2 3.2 26 45-70 125-150 (255)
72 cd07941 DRE_TIM_LeuA3 Desulfob 30.7 79 0.0017 24.2 3.8 30 39-68 113-142 (273)
73 PLN02901 1-acyl-sn-glycerol-3- 28.6 92 0.002 22.7 3.7 29 40-69 105-133 (214)
74 PF08238 Sel1: Sel1 repeat; I 28.3 84 0.0018 15.8 2.6 19 40-58 20-38 (39)
75 PLN02833 glycerol acyltransfer 28.3 87 0.0019 25.6 3.8 26 43-68 220-247 (376)
76 PF03372 Exo_endo_phos: Endonu 27.9 36 0.00078 23.3 1.3 21 46-69 20-40 (249)
77 TIGR03395 sphingomy sphingomye 27.3 58 0.0013 25.1 2.5 15 55-69 33-47 (283)
78 COG1794 RacX Aspartate racemas 27.0 84 0.0018 24.3 3.3 38 27-67 47-84 (230)
79 PF09587 PGA_cap: Bacterial ca 26.3 1.4E+02 0.003 22.2 4.4 50 44-103 170-219 (250)
80 PF08891 YfcL: YfcL protein; 26.3 14 0.00029 24.4 -1.0 30 42-75 3-32 (85)
81 PF00990 GGDEF: GGDEF domain; 26.2 1.8E+02 0.0039 18.5 4.5 34 25-58 124-158 (161)
82 PF00128 Alpha-amylase: Alpha 26.2 95 0.0021 22.6 3.4 21 43-63 50-70 (316)
83 PRK06801 hypothetical protein; 26.2 1.3E+02 0.0027 23.7 4.2 34 28-61 98-131 (286)
84 cd07409 MPP_CD73_N CD73 ecto-5 25.6 78 0.0017 24.1 2.9 21 44-64 168-188 (281)
85 TIGR01722 MMSDH methylmalonic 25.6 1.8E+02 0.0039 23.9 5.2 27 41-67 322-348 (477)
86 TIGR00111 pelota probable tran 25.3 87 0.0019 25.1 3.2 30 45-74 308-337 (351)
87 TIGR00633 xth exodeoxyribonucl 25.2 50 0.0011 23.9 1.7 20 51-70 20-39 (255)
88 COG0047 PurL Phosphoribosylfor 24.5 1.1E+02 0.0024 23.7 3.5 70 25-101 2-82 (231)
89 PRK10239 2-amino-4-hydroxy-6-h 24.5 1.3E+02 0.0027 21.7 3.6 49 28-78 3-54 (159)
90 cd06551 LPLAT Lysophospholipid 24.4 1E+02 0.0022 21.1 3.2 19 51-69 93-112 (187)
91 PF07131 DUF1382: Protein of u 24.1 1.1E+02 0.0024 18.9 2.8 23 44-66 9-31 (61)
92 TIGR01859 fruc_bis_ald_ fructo 24.0 1.5E+02 0.0033 23.0 4.3 33 28-60 98-130 (282)
93 PRK07315 fructose-bisphosphate 24.0 1.6E+02 0.0034 23.2 4.4 34 28-61 100-133 (293)
94 COG2100 Predicted Fe-S oxidore 23.4 89 0.0019 26.0 2.9 35 40-75 237-271 (414)
95 PRK06512 thiamine-phosphate py 22.4 1.9E+02 0.0041 21.6 4.4 36 28-63 41-76 (221)
96 COG2048 HdrB Heterodisulfide r 22.1 1.3E+02 0.0028 24.0 3.6 28 38-65 202-229 (293)
97 smart00642 Aamy Alpha-amylase 21.9 1E+02 0.0022 21.9 2.8 21 43-63 68-88 (166)
98 PF10649 DUF2478: Protein of u 21.8 1.1E+02 0.0024 22.2 2.9 25 41-65 76-100 (159)
99 TIGR02171 Fb_sc_TIGR02171 Fibr 21.8 2.7E+02 0.0059 25.8 5.9 44 39-85 802-847 (912)
100 COG0352 ThiE Thiamine monophos 21.7 2E+02 0.0043 21.7 4.4 38 27-64 34-71 (211)
101 TIGR00195 exoDNase_III exodeox 21.6 87 0.0019 23.0 2.4 20 51-70 19-38 (254)
102 cd02646 R3H_G-patch R3H domain 21.5 1.2E+02 0.0026 17.8 2.7 23 45-67 2-24 (58)
103 TIGR02364 dha_pts dihydroxyace 21.4 1.7E+02 0.0038 20.0 3.8 46 21-67 23-68 (125)
104 cd04795 SIS SIS domain. SIS (S 21.2 1.3E+02 0.0029 17.7 2.9 21 45-65 61-81 (87)
105 PRK10508 hypothetical protein; 21.0 4E+02 0.0087 21.1 6.2 50 23-72 3-54 (333)
106 TIGR00254 GGDEF diguanylate cy 20.5 2.5E+02 0.0053 18.0 5.3 38 26-63 125-162 (165)
107 PRK09856 fructoselysine 3-epim 20.4 1.5E+02 0.0033 21.9 3.5 27 40-66 85-111 (275)
108 PRK06252 methylcobalamin:coenz 20.4 3.5E+02 0.0076 20.8 5.7 22 49-70 184-205 (339)
109 cd07987 LPLAT_MGAT-like Lysoph 20.2 1E+02 0.0023 22.0 2.6 18 52-69 83-100 (212)
110 KOG2450 Aldehyde dehydrogenase 20.1 1.4E+02 0.003 25.7 3.6 28 40-67 347-374 (501)
No 1
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.75 E-value=2.2e-18 Score=133.28 Aligned_cols=83 Identities=63% Similarity=1.104 Sum_probs=80.0
Q ss_pred cCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCccccccccCccChHHHHHHHHcccC
Q 034056 23 ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAID 102 (105)
Q Consensus 23 ~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~ 102 (105)
+.+.||+++|......|..++|+++++++.+|+.+|++||+|||.|+.|||.|+.||-.+|.|.++||+.|++|++++|+
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 034056 103 VPG 105 (105)
Q Consensus 103 i~g 105 (105)
++|
T Consensus 95 v~g 97 (337)
T KOG0805|consen 95 VPG 97 (337)
T ss_pred CCC
Confidence 987
No 2
>PLN02504 nitrilase
Probab=99.74 E-value=9.8e-18 Score=132.74 Aligned_cols=99 Identities=76% Similarity=1.204 Sum_probs=80.8
Q ss_pred CCCccc-cccccccccccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCcccccccc
Q 034056 7 DNAPLL-AEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANR 85 (105)
Q Consensus 7 ~~~~~~-~~~~~~~~~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~~~~ 85 (105)
..||-. -|+||+++...+++|||++|+++.+.|+++|++++.++|++|+++|+|||||||+|++||+.+..+...++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~ 84 (346)
T PLN02504 5 ADMPAVEPEVDMGADASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDR 84 (346)
T ss_pred CCCccccCCccccccccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccc
Confidence 455643 5899999977788999999999988899999999999999999999999999999999999865443233334
Q ss_pred CccChHHHHHHHHcccCCCC
Q 034056 86 TAKGKEDFRKYHASAIDVPG 105 (105)
Q Consensus 86 ~~~~~~~~~~~~~~sv~i~g 105 (105)
..++++.+.+|++++++++|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~g 104 (346)
T PLN02504 85 SPKGREDFRKYHASAIDVPG 104 (346)
T ss_pred cchhHHHHHHHHHhcccCCC
Confidence 44566778888888877664
No 3
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=99.45 E-value=3.3e-13 Score=103.79 Aligned_cols=73 Identities=48% Similarity=0.777 Sum_probs=57.8
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCccccccccCccChHHHHHHHHcccCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDV 103 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~i 103 (105)
||||++|+.+.++|+++|++++.+++++|+++|++||||||+|++||+....+.. ...+.+.+.++++.+.+.
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 73 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGA-----PAEGRELFARYYENSVEV 73 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCC-----cccchHHHHHHHHhCcCC
Confidence 6899999998888999999999999999999999999999999999997543321 122445555665555443
No 4
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=99.39 E-value=6.7e-13 Score=100.36 Aligned_cols=52 Identities=35% Similarity=0.595 Sum_probs=49.5
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
++|||++|+.+...|+++|++++.+++++|+++|||||||||+|+|||++..
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~ 53 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED 53 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc
Confidence 5899999999988999999999999999999999999999999999999873
No 5
>PLN02747 N-carbamolyputrescine amidase
Probab=99.39 E-value=8.4e-13 Score=101.11 Aligned_cols=54 Identities=31% Similarity=0.431 Sum_probs=50.0
Q ss_pred cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
+|.+++|||++|+++. +|++.|++++.+++++|++.|+|||||||+|++||++.
T Consensus 2 ~~~~~~~va~~Q~~~~-~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~ 55 (296)
T PLN02747 2 GMGRKVVVAALQFACS-DDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQ 55 (296)
T ss_pred CCCcceEEEEEEecCC-CCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCcc
Confidence 5667899999999986 89999999999999999999999999999999999764
No 6
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.36 E-value=1.2e-12 Score=111.50 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred cccccccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCC
Q 034056 17 MGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTN 77 (105)
Q Consensus 17 ~~~~~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~ 77 (105)
++.+|..+.||||++|+++.++|++.|++++.+++++|+++|||||||||+|+|||++...
T Consensus 4 ~~~~~~~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl 64 (679)
T PRK02628 4 FFSIYRHGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDL 64 (679)
T ss_pred chhhhhCCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchh
Confidence 3334556789999999999989999999999999999999999999999999999997543
No 7
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=99.33 E-value=2.2e-12 Score=97.57 Aligned_cols=49 Identities=31% Similarity=0.556 Sum_probs=45.3
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
+||||++|+++.++|+++|++++.++++++ +|+|||||||+|++||+..
T Consensus 3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~ 51 (256)
T PRK10438 3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAME 51 (256)
T ss_pred CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCccc
Confidence 599999999998889999999999999985 6999999999999999763
No 8
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=99.32 E-value=3.1e-12 Score=96.34 Aligned_cols=49 Identities=33% Similarity=0.554 Sum_probs=46.5
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
||||++|+.+. +|+++|++++.+++++|+++|+|||||||+|++||...
T Consensus 1 ~~ia~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~ 49 (279)
T TIGR03381 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCK 49 (279)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCC
Confidence 68999999987 89999999999999999999999999999999999764
No 9
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.30 E-value=4.4e-12 Score=95.17 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=47.5
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
+|||++|+++.++|+++|++++.+++++|+++|+|||||||+++|||+..
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~ 50 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWY 50 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcC
Confidence 58999999999899999999999999999999999999999999999864
No 10
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=99.29 E-value=5.4e-12 Score=93.73 Aligned_cols=52 Identities=31% Similarity=0.512 Sum_probs=48.1
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCc
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF 78 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~ 78 (105)
|||++|+++..+|+++|++++.+++++|+++|+|||||||++++||.....+
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~ 52 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAV 52 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchh
Confidence 7999999998789999999999999999999999999999999999875433
No 11
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=99.28 E-value=5.7e-12 Score=97.04 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=47.1
Q ss_pred CcceEEEeccCCCCC--CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 24 STVRATVVQASTIFN--DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~~--d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
+++|||++|+++.++ ++++|++++.+++++|+++|+|||||||++++||..
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~ 54 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFP 54 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCccc
Confidence 479999999988755 899999999999999999999999999999999864
No 12
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=99.27 E-value=6.1e-12 Score=94.11 Aligned_cols=49 Identities=31% Similarity=0.501 Sum_probs=46.7
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
|||++|+++.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~ 49 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPE 49 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChH
Confidence 6999999998899999999999999999999999999999999999864
No 13
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=99.27 E-value=7.4e-12 Score=93.79 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=45.9
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
||||++|+++.++|++.|++++.+++++|++ |+|||||||++++||..
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~ 48 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSM 48 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCc
Confidence 6999999999999999999999999999987 99999999999999975
No 14
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.27 E-value=8.8e-12 Score=94.68 Aligned_cols=52 Identities=31% Similarity=0.447 Sum_probs=47.6
Q ss_pred CcceEEEeccCCC-------CCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 24 STVRATVVQASTI-------FNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 24 ~~~rIA~vQ~~~~-------~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
+++|||++|+++. +.++++|++++.+++++|+++|+|||||||+|++||+..
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~ 60 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCA 60 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCcc
Confidence 5799999999976 478999999999999999999999999999999999753
No 15
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.26 E-value=6.8e-12 Score=107.53 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=50.1
Q ss_pred CcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCC
Q 034056 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTN 77 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~ 77 (105)
+.||||++|+++..+|++.|++++.+.|++|+++||+||||||+++|||++...
T Consensus 2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl 55 (700)
T PLN02339 2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDH 55 (700)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHH
Confidence 369999999998878999999999999999999999999999999999997533
No 16
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.23 E-value=1.8e-11 Score=91.45 Aligned_cols=49 Identities=31% Similarity=0.555 Sum_probs=46.7
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
|||++|+.+.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~ 49 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPD 49 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCcc
Confidence 6999999999899999999999999999999999999999999999864
No 17
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.22 E-value=1.9e-11 Score=95.05 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=46.0
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhh----CCceEEEcCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASG----YGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~----~gadLIvfPEl~ltGY~~~ 75 (105)
|||++|+++.++|+++|++++.++|++|++ +|+|||||||+|+|||...
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~ 53 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFH 53 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcc
Confidence 699999999888999999999999999988 8999999999999999864
No 18
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=99.21 E-value=2.5e-11 Score=91.74 Aligned_cols=49 Identities=37% Similarity=0.449 Sum_probs=46.7
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
||||++|+++. .|+++|++++.+++++|+++|+|||||||++++||+.+
T Consensus 1 ~~ia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~ 49 (284)
T cd07573 1 VTVALVQMACS-EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQ 49 (284)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcc
Confidence 68999999997 89999999999999999999999999999999999875
No 19
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.20 E-value=2.8e-11 Score=90.55 Aligned_cols=50 Identities=30% Similarity=0.445 Sum_probs=47.3
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
|||++|+++..+|++.|++++++++++|+++|+|||||||++++||....
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~ 50 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVR 50 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCc
Confidence 69999999987899999999999999999999999999999999999754
No 20
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.20 E-value=2.5e-11 Score=91.14 Aligned_cols=50 Identities=30% Similarity=0.561 Sum_probs=47.2
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
|||++|+++.++|.+.|++++.+++++|+++|++||||||++++||....
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~ 50 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGD 50 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchh
Confidence 69999999998999999999999999999999999999999999998753
No 21
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.20 E-value=3e-11 Score=96.52 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=47.7
Q ss_pred cccCcceEEEeccCCCC-------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 21 SSASTVRATVVQASTIF-------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~-------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
+-.+.+|||++|+.+.+ +|+++|++++.+++++|+++|++||||||+|++||.+
T Consensus 59 ~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~ 119 (363)
T cd07587 59 RPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAF 119 (363)
T ss_pred CCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccc
Confidence 33557999999998654 4899999999999999999999999999999999864
No 22
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=99.20 E-value=3.1e-11 Score=90.17 Aligned_cols=49 Identities=31% Similarity=0.475 Sum_probs=46.0
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||....
T Consensus 1 kia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~ 49 (265)
T cd07572 1 RVALIQMTST-ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDA 49 (265)
T ss_pred CEEEEEeeCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchh
Confidence 6999999988 899999999999999999999999999999999998643
No 23
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.20 E-value=3.1e-11 Score=89.90 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=47.0
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
|||++|+++...|+++|++++.+++++|+++|+|||||||++++||....
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~ 50 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDD 50 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhh
Confidence 69999999998899999999999999999999999999999999997643
No 24
>PRK13981 NAD synthetase; Provisional
Probab=99.19 E-value=2.8e-11 Score=100.25 Aligned_cols=51 Identities=29% Similarity=0.524 Sum_probs=48.5
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
||||++|+++.++|++.|++++.+++++|+++|+|||||||++++||+...
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d 51 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPED 51 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhh
Confidence 699999999998999999999999999999999999999999999998753
No 25
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.18 E-value=4.7e-11 Score=89.89 Aligned_cols=50 Identities=32% Similarity=0.420 Sum_probs=46.8
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
|||++|+++.++++++|++++.+++++|.++|+|||||||++++||+...
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~ 50 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFES 50 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCC
Confidence 69999999998999999999999999999999999999999999997643
No 26
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.17 E-value=4.4e-11 Score=91.76 Aligned_cols=48 Identities=35% Similarity=0.502 Sum_probs=45.1
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
|||++|+++. .|+++|++++.+++++|+++|+|||||||++++||...
T Consensus 1 ria~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~ 48 (279)
T cd07579 1 RIAVAQFAPT-PDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDP 48 (279)
T ss_pred CEEEEeccCc-cCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCCh
Confidence 6999999998 49999999999999999999999999999999999754
No 27
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.15 E-value=2.9e-11 Score=91.44 Aligned_cols=48 Identities=33% Similarity=0.406 Sum_probs=44.8
Q ss_pred ceEEEeccCCCC-CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056 26 VRATVVQASTIF-NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73 (105)
Q Consensus 26 ~rIA~vQ~~~~~-~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~ 73 (105)
||||++|+++.+ +|+++|++++++++++|+++|+|||||||+|++||.
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~ 49 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELL 49 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHH
Confidence 699999999874 799999999999999999999999999999999863
No 28
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=99.15 E-value=6e-11 Score=92.71 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=47.6
Q ss_pred ceEEEeccCCCCCCH-------HHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 26 VRATVVQASTIFNDT-------PATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~-------~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
.|+|++|+.+.+.++ ++|++++.+++++|+++|+|||||||+|+|||....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~ 58 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTR 58 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCc
Confidence 378999999999998 999999999999999999999999999999998654
No 29
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.13 E-value=7.8e-11 Score=83.52 Aligned_cols=48 Identities=38% Similarity=0.628 Sum_probs=43.5
Q ss_pred eEEEeccCC--CCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 27 RATVVQAST--IFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 27 rIA~vQ~~~--~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
|||++|+++ .+.|.++|++++.+++++|+++|+|||||||++++||+.
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~ 50 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPN 50 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-G
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhccccc
Confidence 799999996 668999999999999999999999999999999999954
No 30
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.11 E-value=9.9e-11 Score=87.14 Aligned_cols=47 Identities=36% Similarity=0.587 Sum_probs=44.6
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
||++|+++. +|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus 1 ia~~Q~~~~-~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~ 47 (255)
T cd07581 1 VALAQFASS-GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDG 47 (255)
T ss_pred CEEEEeeCC-CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcc
Confidence 689999998 89999999999999999999999999999999999864
No 31
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=99.10 E-value=1.5e-10 Score=89.33 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=44.6
Q ss_pred ceEEEeccCC----CCCCHHHHHHHHHHHHHHHhh--CCceEEEcCCCCCCCCCC
Q 034056 26 VRATVVQAST----IFNDTPATLDKAERLLAEASG--YGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 26 ~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~--~gadLIvfPEl~ltGY~~ 74 (105)
++||++|+++ ..+++++|++++.+++++|++ +|+|||||||++++||+.
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~ 55 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMY 55 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCC
Confidence 4799999998 567999999999999999986 599999999999999985
No 32
>PLN02798 nitrilase
Probab=99.09 E-value=2.5e-10 Score=87.32 Aligned_cols=54 Identities=33% Similarity=0.547 Sum_probs=47.8
Q ss_pred cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCC-CCCCCCC
Q 034056 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAF-IGGYPRG 75 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~-ltGY~~~ 75 (105)
||.+.+|||++|+.+. +|+++|++++.+++++|+++|+|||||||+| .+||...
T Consensus 6 ~~~~~~ria~~Q~~~~-~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~ 60 (286)
T PLN02798 6 TAGSSVRVAVAQMTST-NDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDG 60 (286)
T ss_pred cccCccEEEEEEccCC-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCch
Confidence 4567899999999975 8999999999999999999999999999996 4788743
No 33
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=99.08 E-value=2.4e-10 Score=84.07 Aligned_cols=50 Identities=36% Similarity=0.562 Sum_probs=46.9
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCC
Q 034056 28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTN 77 (105)
Q Consensus 28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~ 77 (105)
||++|+++.+++.++|++++.+++++|.++|+|||||||++++||..+..
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~ 50 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESA 50 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccc
Confidence 68999999989999999999999999999999999999999999987643
No 34
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.05 E-value=2.6e-10 Score=85.45 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=42.8
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
|||++|+.+.++|+++|++++.+++++|. +|||||||++++||+..
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~ 46 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFT 46 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcC
Confidence 69999999988899999999999999884 99999999999999864
No 35
>PLN00202 beta-ureidopropionase
Probab=99.00 E-value=6.2e-10 Score=90.35 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=47.0
Q ss_pred cCcceEEEeccCCCC-------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 23 ASTVRATVVQASTIF-------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 23 ~~~~rIA~vQ~~~~~-------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
.+++|||++|+++.+ .++++|++++.+++++|+++|+|||||||+|++||..
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~ 142 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAF 142 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhcccccc
Confidence 457999999999753 4899999999999999999999999999999999964
No 36
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=98.99 E-value=6.4e-10 Score=84.67 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=44.7
Q ss_pred ceEEEeccCCCCC------CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056 26 VRATVVQASTIFN------DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73 (105)
Q Consensus 26 ~rIA~vQ~~~~~~------d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~ 73 (105)
+|||++|+++..+ |.++|++++.+++++|+++|+|||||||++++||+
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~ 54 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDL 54 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccc
Confidence 5899999998865 67999999999999999999999999999999997
No 37
>PRK13287 amiF formamidase; Provisional
Probab=98.99 E-value=9.2e-10 Score=86.97 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=46.2
Q ss_pred CcceEEEeccCC----CCCCHHHHHHHHHHHHHHHhhC--CceEEEcCCCCCCCCCCC
Q 034056 24 STVRATVVQAST----IFNDTPATLDKAERLLAEASGY--GSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 24 ~~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~~--gadLIvfPEl~ltGY~~~ 75 (105)
..+|||++|++. ...++++|++++.+++++|++. |+|||||||++++||+..
T Consensus 12 ~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~ 69 (333)
T PRK13287 12 EGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTK 69 (333)
T ss_pred CceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCcc
Confidence 469999999986 3468999999999999999864 899999999999999864
No 38
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.93 E-value=1.8e-09 Score=82.81 Aligned_cols=49 Identities=29% Similarity=0.464 Sum_probs=43.5
Q ss_pred eEEEeccCCCC----CCHHHHHHHHHHHHHHHhh-----CCceEEEcCCCCCCCCCCC
Q 034056 27 RATVVQASTIF----NDTPATLDKAERLLAEASG-----YGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 27 rIA~vQ~~~~~----~d~~~Nl~~i~~~i~~Aa~-----~gadLIvfPEl~ltGY~~~ 75 (105)
+++++|..+.. +|++.|++++.++|++|++ +|+|||||||+|+|||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~ 59 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMG 59 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcc
Confidence 56788988776 7999999999999999987 4799999999999999874
No 39
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=98.79 E-value=9.1e-09 Score=81.94 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=43.2
Q ss_pred CcceEEEeccCC----CCCCHHHHHHHHHHHHHHHh--hCCceEEEcCCCCCCCCCC
Q 034056 24 STVRATVVQAST----IFNDTPATLDKAERLLAEAS--GYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 24 ~~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa--~~gadLIvfPEl~ltGY~~ 74 (105)
..++||++|.+. ...|+.+|++++.+++++|. ..|+|||||||++++||.+
T Consensus 11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y 67 (345)
T PRK13286 11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMY 67 (345)
T ss_pred CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCc
Confidence 359999999972 22578999999999999986 4589999999999999764
No 40
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=98.70 E-value=2.7e-08 Score=78.44 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=51.3
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCccccc
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSI 82 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~ 82 (105)
++++|++|......++.+|+++++..+++|+++|++||||||++++||.....|-++.
T Consensus 13 ~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~ 70 (298)
T KOG0806|consen 13 NATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYL 70 (298)
T ss_pred ccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchh
Confidence 5899999999997799999999999999999999999999999999999853333333
No 41
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.1e-07 Score=73.83 Aligned_cols=71 Identities=27% Similarity=0.318 Sum_probs=52.7
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCC-CCCCCCCccccccccCccChHHHHHHHHcc
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIG-GYPRGTNFGVSIANRTAKGKEDFRKYHASA 100 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~lt-GY~~~~~~~~~~~~~~~~~~~~~~~~~~~s 100 (105)
.-+||++|+.+. .|..+|++.+.++|++|+++||++|+|||+|.. |-.. +..+...++.+-+.-.+|.+.+
T Consensus 15 ~~~vAv~Qm~S~-~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~----~esi~Lae~l~~k~m~~y~ela 86 (295)
T KOG0807|consen 15 LKRVAVAQMTSS-NDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNP----LESIELAEPLDGKFMEQYRELA 86 (295)
T ss_pred cceeEEEeeccc-hHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCc----ccceecccccChHHHHHHHHHH
Confidence 378999999998 799999999999999999999999999999741 1111 1122223334556666776543
No 42
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=98.27 E-value=1.1e-06 Score=70.11 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=43.2
Q ss_pred CcceEEEeccCCCCC------CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 24 STVRATVVQASTIFN------DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~~------d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
+.+||+++|.++... +.++|++++.++++++.+ ++||||+||.++++|..
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~ 213 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLE 213 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchh
Confidence 468999999998754 357899999999999877 89999999999998854
No 43
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=98.05 E-value=5.9e-06 Score=68.08 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=40.4
Q ss_pred cceEEEeccCCCC------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056 25 TVRATVVQASTIF------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73 (105)
Q Consensus 25 ~~rIA~vQ~~~~~------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~ 73 (105)
++|||++|.+... .+.++|++++.+++++ +++|+|+||+||.++++|.
T Consensus 219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~-~~~~~dlvV~PE~a~p~~~ 272 (505)
T PRK00302 219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRP-ALGPADLIIWPETAIPFLL 272 (505)
T ss_pred CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhc-ccCCCCEEEeCCccccccc
Confidence 5899999999875 3567899999999985 4679999999999987763
No 44
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=97.68 E-value=8.8e-05 Score=60.51 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=40.2
Q ss_pred ceEEEeccCCCCCC------HHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056 26 VRATVVQASTIFND------TPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d------~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~ 73 (105)
.+|+++|.+..... .++|+++..++++++.++++|+||+||++.++|.
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~ 248 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLAL 248 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccch
Confidence 49999999877332 2689999999999998889999999999887654
No 45
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=96.99 E-value=0.0006 Score=57.85 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=52.0
Q ss_pred ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCc
Q 034056 22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF 78 (105)
Q Consensus 22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~ 78 (105)
|.++++||.++++.=-.|.+.|.++|.+.|++|+++||.+=+=||+=+|||.++-+|
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf 57 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHF 57 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhh
Confidence 346799999999865569999999999999999999999999999999999998877
No 46
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=96.08 E-value=0.0071 Score=49.21 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
++.+++.+.+++|.++|+|+|||||+++++|..
T Consensus 206 ~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~ 238 (388)
T PRK13825 206 ERRRELIATVRAAAAAGARVVVLPESALGFWTP 238 (388)
T ss_pred HHHHHHHHHHHhhcccCCCEEEccCcccccccc
Confidence 444456667777788899999999999999864
No 47
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=93.97 E-value=0.11 Score=41.34 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=40.3
Q ss_pred cCcceEEEeccCCCCC-------CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 23 ASTVRATVVQASTIFN-------DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 23 ~~~~rIA~vQ~~~~~~-------d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
.+.++|+++|-.+... ....-.+++...|+.|+-.|+.+|||.|.|.-+|.+
T Consensus 71 pr~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfaf 129 (387)
T KOG0808|consen 71 PRVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAF 129 (387)
T ss_pred CcEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhh
Confidence 3457999999765522 234566788888998989999999999999877653
No 48
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.44 E-value=1.4 Score=37.24 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=30.3
Q ss_pred CcceEEEeccCCCCC---CHHHHHHHHHHHHHHH---h--hCCceEEEcCCCCCCCCC
Q 034056 24 STVRATVVQASTIFN---DTPATLDKAERLLAEA---S--GYGSQVVVFPEAFIGGYP 73 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~~---d~~~Nl~~i~~~i~~A---a--~~gadLIvfPEl~ltGY~ 73 (105)
+.++|+++|.++... |.++-.+.+...+.+. . .+++|+||+||..++-+.
T Consensus 226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~ 283 (518)
T COG0815 226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDL 283 (518)
T ss_pred CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccch
Confidence 359999999987621 2222222222222222 2 378999999999886433
No 49
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=73.34 E-value=6.3 Score=29.93 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCC
Q 034056 39 DTPATLDKAERLLAEASGYGSQVVVFPEAFIGG 71 (105)
Q Consensus 39 d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltG 71 (105)
+...+.+.+.+.++...++|..+++|||-.-+.
T Consensus 120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~ 152 (245)
T PRK15018 120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSR 152 (245)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEECCccCCC
Confidence 566677777777777767788999999975543
No 50
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=66.25 E-value=11 Score=24.36 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 41 PATLDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
........+.+.+..++|--+++|||-..
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~i~ifPEG~~ 102 (132)
T PF01553_consen 74 RKKNRKALKDIKEILRKGGSIVIFPEGTR 102 (132)
T ss_dssp HHHHHHHHHHHHHHHHC---EEE-TT-S-
T ss_pred ccccchhHHHHHHHhhhcceeeecCCccC
Confidence 33445555555556666555999999844
No 51
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=65.80 E-value=12 Score=23.51 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 41 PATLDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
..+.+.+.+.++ +.++|..+++|||-..
T Consensus 59 ~~~~~~~~~~~~-~l~~~~~~~ifPeG~~ 86 (118)
T smart00563 59 RLARAALREAVR-LLRDGGWLLIFPEGTR 86 (118)
T ss_pred HHHHHHHHHHHH-HHhCCCEEEEeCCccc
Confidence 355555555554 5567899999999864
No 52
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=62.18 E-value=15 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhCCceEEEcCCCCCC
Q 034056 43 TLDKAERLLAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 43 Nl~~i~~~i~~Aa~~gadLIvfPEl~lt 70 (105)
......+.+.++.++|..+++|||-..+
T Consensus 74 ~~~~~~~~~~~~l~~g~~v~ifPeG~~~ 101 (130)
T TIGR00530 74 AIATALKAAIEVLKQGRSIGVFPEGTRS 101 (130)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3345555566667788899999998653
No 53
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=55.81 E-value=20 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhC--CceEEEcCCCC
Q 034056 41 PATLDKAERLLAEASGY--GSQVVVFPEAF 68 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~--gadLIvfPEl~ 68 (105)
++..+.+.+.+++..+. +-.+++|||-.
T Consensus 85 ~~d~~~i~~~~~~l~~~~~~~~lviFPEGT 114 (193)
T cd07990 85 EKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114 (193)
T ss_pred HHhHHHHHHHHHHHhcCCCCcEEEEeCccc
Confidence 34455666666665553 78899999963
No 54
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=54.15 E-value=19 Score=25.87 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCceEEEcCCCCCC
Q 034056 45 DKAERLLAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIvfPEl~lt 70 (105)
..+.+.+.++.++|-.+++|||--.+
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 44555666667788999999998653
No 55
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=52.43 E-value=21 Score=26.93 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEcCCCCCCC
Q 034056 41 PATLDKAERLLAEASGYGSQVVVFPEAFIGG 71 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltG 71 (105)
..=.+.+..++.+|.++++++-+|-|.|.+|
T Consensus 118 ndl~d~Le~~l~~A~~~~~~iyvFG~~F~~g 148 (206)
T PF10042_consen 118 NDLNDDLEPYLQRAISDDATIYVFGEPFRPG 148 (206)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEECceecCC
Confidence 3445778889999999999999999999877
No 56
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=51.41 E-value=19 Score=26.09 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhCCceEEEcCCCCCCCC
Q 034056 45 DKAERLLAEASGYGSQVVVFPEAFIGGY 72 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIvfPEl~ltGY 72 (105)
+.+.+.+++..++|-.+++|||-.-+..
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs~~ 115 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRSRT 115 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCCC
Confidence 4556667777788999999999865443
No 57
>PTZ00261 acyltransferase; Provisional
Probab=45.62 E-value=32 Score=28.15 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 43 TLDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 43 Nl~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
..+.+.+.+++..++|-.+++|||-.-
T Consensus 200 a~~~v~~~~~e~Lk~G~sLvIFPEGTR 226 (355)
T PTZ00261 200 KQAQVQQAIDAHLRLGGSLAFFPEGAI 226 (355)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCcCC
Confidence 444566666666788999999999754
No 58
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=44.55 E-value=36 Score=24.49 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056 45 DKAERLLAEASGYGSQVVVFPEAFIGGYP 73 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIvfPEl~ltGY~ 73 (105)
..+.++.++.....+-+++.||+ ..+|+
T Consensus 56 ~~v~~~~~~i~~aD~li~~tPeY-n~s~p 83 (184)
T COG0431 56 PAVQALREAIAAADGLIIATPEY-NGSYP 83 (184)
T ss_pred HHHHHHHHHHHhCCEEEEECCcc-CCCCC
Confidence 44556666666667899999995 33444
No 59
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=42.72 E-value=32 Score=24.94 Aligned_cols=29 Identities=10% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAFIGG 71 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltG 71 (105)
.+.+.+.+ +.++.++|-.+++|||-..+.
T Consensus 83 ~~~~~~~~-~~~~L~~G~~l~IFPEGtrs~ 111 (210)
T cd07986 83 KNRESLRE-ALRHLKNGGALIIFPAGRVST 111 (210)
T ss_pred hhHHHHHH-HHHHHhCCCEEEEECCccccc
Confidence 34443333 334456788999999986544
No 60
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=41.47 E-value=31 Score=27.37 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=37.0
Q ss_pred Cccccccccccccc--cCcceEEEeccCCC----CCCHHHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 9 APLLAEVDMGTDSS--ASTVRATVVQASTI----FNDTPATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 9 ~~~~~~~~~~~~~~--~~~~rIA~vQ~~~~----~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
-|+|-.-++++.-. ...++...+-.... ....++-++++.+.+.+|.+.|+.+|++-.--
T Consensus 100 sPiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~~~~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~ 165 (287)
T PF04898_consen 100 SPILSNGQLEKLRSLDDPGFKAATLDATFPAEGGDEGLEEALDRLCEEAEAAVREGANILILSDRN 165 (287)
T ss_dssp SSB--HHHHHHHHHH--CCCCEEEEESEEESTTSTTCHHHHHHHHHHHHHHHHHCT-SEEEEESTC
T ss_pred CCEECHHHHHHHHHhhccCCCccEEEEEEECCcChhHHHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 46665555544411 13455544443222 24689999999999999999999999986543
No 61
>PRK14014 putative acyltransferase; Provisional
Probab=41.32 E-value=36 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
..++.+.+.+++..+.+..+++|||-.-
T Consensus 158 ~d~~~~~~a~~~~~~~~~~l~IFPEGTR 185 (301)
T PRK14014 158 KDLETTRRACEKFKRMPTTIVNFVEGTR 185 (301)
T ss_pred hHHHHHHHHHHHHhcCCcEEEEecccee
Confidence 3455566666666566888999999743
No 62
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=37.47 E-value=42 Score=23.57 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAFIGG 71 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltG 71 (105)
..++.+.+.+++ .++-.+++|||-.-+.
T Consensus 81 ~~~~~~~~~l~~--g~~~~l~IFPEGtR~~ 108 (163)
T cd07988 81 GLVEQVVEEFRR--REEFVLAIAPEGTRSK 108 (163)
T ss_pred cHHHHHHHHHHh--CCCcEEEEeCCCCCCC
Confidence 344444444443 2345799999986544
No 63
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=36.99 E-value=86 Score=24.06 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=32.3
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~lt 70 (105)
+|--+.++=......+.++.+.+.++++.+.|.=+++.||..++
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 45555555443334577899999999999888899999997543
No 64
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=36.83 E-value=36 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHHhh--CCceEEEcCCCCC
Q 034056 46 KAERLLAEASG--YGSQVVVFPEAFI 69 (105)
Q Consensus 46 ~i~~~i~~Aa~--~gadLIvfPEl~l 69 (105)
+..+.+.+..+ +|-.+++|||-..
T Consensus 83 ~~~~~~~~~~~~~~g~~v~iFPEGtr 108 (211)
T cd07991 83 KVVEEIKERATDPNWPPILIFPEGTT 108 (211)
T ss_pred HHHHHHHHHHhCCCCCeEEEecCccc
Confidence 33344444443 4688999999744
No 65
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=36.06 E-value=61 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 39 DTPATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 39 d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
++++-++.+.+..++-.+++.++-||||-.
T Consensus 144 r~~~Ai~~l~~~~~~mkk~~~kvWvFPEGT 173 (276)
T KOG2848|consen 144 RREKAIDTLDKCAERMKKENRKVWVFPEGT 173 (276)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEccCCc
Confidence 577888888888888888899999999964
No 66
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=34.70 E-value=1.9e+02 Score=22.85 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=37.1
Q ss_pred cCcceEEEeccCCCCCCH------HHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 23 ASTVRATVVQASTIFNDT------PATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 23 ~~~~rIA~vQ~~~~~~d~------~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
.++.-|+++.+.+-++++ ++-++++.+-.....+.|+|-|.+--.+-++|..
T Consensus 6 ~~k~vIGvvHL~PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k 63 (263)
T COG0434 6 TKKPVIGVVHLLPLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLK 63 (263)
T ss_pred CCCceEEEEecCCCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Confidence 445789999999888766 3344444444444456799999887777888877
No 67
>PRK11756 exonuclease III; Provisional
Probab=33.88 E-value=41 Score=25.05 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
..++++.++|++ .++|+|||.|..
T Consensus 13 ~~~~~i~~~i~~---~~pDIi~LQE~~ 36 (268)
T PRK11756 13 ARPHQLEAIIEK---HQPDVIGLQETK 36 (268)
T ss_pred HHHHHHHHHHHh---cCCCEEEEEecc
Confidence 344555555554 579999999974
No 68
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.12 E-value=72 Score=24.71 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCC
Q 034056 38 NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72 (105)
Q Consensus 38 ~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY 72 (105)
.++++.++++.+.++.|.+.|.++.+-.|.|.++|
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~ 142 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM 142 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC
Confidence 36899999999999999999999999999865555
No 69
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=32.13 E-value=2.4e+02 Score=21.85 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=38.9
Q ss_pred CcceEEEeccCCCCCC------HHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 24 STVRATVVQASTIFND------TPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~~d------~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
++.-||.+++.+-+++ .++-++++.+-++...+.|.|=|++-=++-.+|...
T Consensus 2 ~KpiIGmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~ 59 (254)
T PF03437_consen 2 EKPIIGMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKR 59 (254)
T ss_pred CCCEEEEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCC
Confidence 3567899999886664 456666666666666788999999988888778764
No 70
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=31.88 E-value=21 Score=28.16 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=24.7
Q ss_pred eccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCC---CCCCCCCCCCC
Q 034056 31 VQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPE---AFIGGYPRGTN 77 (105)
Q Consensus 31 vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPE---l~ltGY~~~~~ 77 (105)
.|+.+. .|.+..=+.+.+=++.+.+.|+|++..|. +|-.|+.....
T Consensus 60 ~QF~~~-eD~~~YPR~~e~D~~ll~~~gvD~vF~Ps~~emYP~~~~t~v~ 108 (280)
T PF02569_consen 60 TQFGPN-EDFDKYPRTLERDLELLEKAGVDAVFAPSVEEMYPEGFSTYVS 108 (280)
T ss_dssp GGSSTT-SHTTTS---HHHHHHHHHHTT-SEEE---HHHHSTTTSTCEEE
T ss_pred ccCCCc-chhhhCCCChHHHHHHHhccCCCEEEcCCCCccCCCCCceEEE
Confidence 377776 55543334444445555567999999995 67777765443
No 71
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=31.20 E-value=64 Score=23.15 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhCCceEEEcCCCCCC
Q 034056 45 DKAERLLAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIvfPEl~lt 70 (105)
+.+.+.++...++|-.+++|||-..+
T Consensus 125 ~~~~~~~~~~~~~g~~l~iFPEGtr~ 150 (255)
T COG0204 125 ETLRAAVARLKAGGRSLVIFPEGTRS 150 (255)
T ss_pred HHHHHHHHHHHhCCcEEEECCCcCcC
Confidence 44556666666668899999997653
No 72
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=30.68 E-value=79 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 39 DTPATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 39 d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
+.+++++++.+.++.|.+.|..+.+-+|.|
T Consensus 113 ~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 113 TLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 578899999999999999999887778866
No 73
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=28.62 E-value=92 Score=22.68 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
.....+.+.+ +.++.++|-.+++|||-..
T Consensus 105 ~~~~~~~~~~-~~~~l~~g~~v~IfPEGtr 133 (214)
T PLN02901 105 RRSQLECLKR-CMELLKKGASVFFFPEGTR 133 (214)
T ss_pred cHHHHHHHHH-HHHHHhCCCEEEEeCCCCC
Confidence 3344444333 4444567889999999853
No 74
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=28.34 E-value=84 Score=15.83 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 034056 40 TPATLDKAERLLAEASGYG 58 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~g 58 (105)
.+.|.++..++.++|++.|
T Consensus 20 ~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 20 VPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHcc
Confidence 4558999999999998875
No 75
>PLN02833 glycerol acyltransferase family protein
Probab=28.29 E-value=87 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhh--CCceEEEcCCCC
Q 034056 43 TLDKAERLLAEASG--YGSQVVVFPEAF 68 (105)
Q Consensus 43 Nl~~i~~~i~~Aa~--~gadLIvfPEl~ 68 (105)
..+.+.+.+++..+ +|-.+++|||-.
T Consensus 220 ~~~~~~~~l~~~l~~~~G~~llIFPEGT 247 (376)
T PLN02833 220 DREVVAKKLRDHVQDPDRNPLLIFPEGT 247 (376)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence 34445555555443 688999999963
No 76
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=27.89 E-value=36 Score=23.33 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhCCceEEEcCCCCC
Q 034056 46 KAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 46 ~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
++.+.|. +.++|||+|.|...
T Consensus 20 ~i~~~i~---~~~~Dii~LQEv~~ 40 (249)
T PF03372_consen 20 EIAQWIA---ELDPDIIALQEVRN 40 (249)
T ss_dssp HHHHHHH---HHT-SEEEEEEEES
T ss_pred HHHHHHH---hcCCCEEEEecchh
Confidence 3444444 34599999999873
No 77
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=27.29 E-value=58 Score=25.14 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.4
Q ss_pred hhCCceEEEcCCCCC
Q 034056 55 SGYGSQVVVFPEAFI 69 (105)
Q Consensus 55 a~~gadLIvfPEl~l 69 (105)
...++|+|+|.|.|.
T Consensus 33 ~~~~~DVV~LQEv~~ 47 (283)
T TIGR03395 33 YIKNQDVVILNEAFD 47 (283)
T ss_pred cccCCCEEEEecccc
Confidence 345899999999984
No 78
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.98 E-value=84 Score=24.31 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.3
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
.+-.+|-...|.++.+-|....+.++ +.|||+|++|=.
T Consensus 47 ~~~~~q~~~~w~~~~~~L~~~a~~Le---~~GAd~i~l~~N 84 (230)
T COG1794 47 EIETLQRAGEWDEAGEILIDAAKKLE---RAGADFIVLPTN 84 (230)
T ss_pred cHHHHHccCccccHHHHHHHHHHHHH---hcCCCEEEEeCC
Confidence 34455767676666665555554444 558999999843
No 79
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=26.33 E-value=1.4e+02 Score=22.18 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCccccccccCccChHHHHHHHHcccCC
Q 034056 44 LDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDV 103 (105)
Q Consensus 44 l~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~i 103 (105)
++.+.+.|+++. +++|+|++==-| |..+. ..+.+.+++..+++.+..+++
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~Hw--G~e~~-------~~p~~~q~~~a~~lidaGaDi 219 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHW--GIEYE-------NYPTPEQRELARALIDAGADI 219 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEecc--CCCCC-------CCCCHHHHHHHHHHHHcCCCE
Confidence 388899999887 788888763333 32221 113445777788877766553
No 80
>PF08891 YfcL: YfcL protein; InterPro: IPR014987 This group of proteins are functionally uncharacterised. They are related to the short YfcL protein from Escherichia coli.
Probab=26.32 E-value=14 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
+-.+++..+|+.....+.| -|+|.+||-+|
T Consensus 3 efe~~l~~~iD~~V~~asD----DeLFA~GYLrG 32 (85)
T PF08891_consen 3 EFEERLLALIDDMVEHASD----DELFASGYLRG 32 (85)
T ss_pred HHHHHHHHHHHHHHhcCCh----HHHHHHHHHhH
Confidence 4567888889988888888 89999999987
No 81
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=26.23 E-value=1.8e+02 Score=18.54 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=27.7
Q ss_pred cceEEEecc-CCCCCCHHHHHHHHHHHHHHHhhCC
Q 034056 25 TVRATVVQA-STIFNDTPATLDKAERLLAEASGYG 58 (105)
Q Consensus 25 ~~rIA~vQ~-~~~~~d~~~Nl~~i~~~i~~Aa~~g 58 (105)
.+.+|++.. .....+.++=++++...+.+|.+.|
T Consensus 124 ~~~~G~~~~~~~~~~~~~~ll~~a~~al~~ak~~g 158 (161)
T PF00990_consen 124 TLSIGIAVYDPNDGQDADELLKKADQALQEAKEQG 158 (161)
T ss_dssp EEEEEEEEEETSTTSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 477888888 3454689999999999999998776
No 82
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=26.19 E-value=95 Score=22.56 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhCCceEEE
Q 034056 43 TLDKAERLLAEASGYGSQVVV 63 (105)
Q Consensus 43 Nl~~i~~~i~~Aa~~gadLIv 63 (105)
+.+.++++|++|++.|.++|+
T Consensus 50 t~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhhhhhhhccccccceEEE
Confidence 567899999999999998886
No 83
>PRK06801 hypothetical protein; Provisional
Probab=26.18 E-value=1.3e+02 Score=23.71 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=28.4
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceE
Q 034056 28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQV 61 (105)
Q Consensus 28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadL 61 (105)
...+|+.....+.++|++..++..+.|.+.|+++
T Consensus 98 ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 98 FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3577887776678999999999999999888864
No 84
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=25.59 E-value=78 Score=24.12 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhCCceEEEc
Q 034056 44 LDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 44 l~~i~~~i~~Aa~~gadLIvf 64 (105)
++.+.+.++++.++|+|+||+
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~ 188 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIA 188 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 456677777777778999875
No 85
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=25.57 E-value=1.8e+02 Score=23.91 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 41 PATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
....+++.+++++|.++|+++++-.+.
T Consensus 322 ~~~~~~~~~~i~~a~~~Ga~il~gg~~ 348 (477)
T TIGR01722 322 PQAKDRVASLIAGGAAEGAEVLLDGRG 348 (477)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEeCCCc
Confidence 567899999999999999999987764
No 86
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=25.30 E-value=87 Score=25.12 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 45 DKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
+++.++++.+.+.|+++++||..+-+|-..
T Consensus 308 ~~~~~l~~~v~~~gg~V~i~Ss~~e~G~qL 337 (351)
T TIGR00111 308 EEIEKLLDSVESMGGKVVILSTEHELGKQL 337 (351)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCccHHHH
Confidence 468889999999999999999999988665
No 87
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.24 E-value=50 Score=23.92 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=15.0
Q ss_pred HHHHhhCCceEEEcCCCCCC
Q 034056 51 LAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 51 i~~Aa~~gadLIvfPEl~lt 70 (105)
++...+.++|+|||.|.-..
T Consensus 20 ~~~l~~~~~DIv~LQE~~~~ 39 (255)
T TIGR00633 20 LDWLKEEQPDVLCLQETKVA 39 (255)
T ss_pred HHHHHhcCCCEEEEEeccCc
Confidence 44445668999999998654
No 88
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=24.53 E-value=1.1e+02 Score=23.66 Aligned_cols=70 Identities=21% Similarity=0.176 Sum_probs=36.0
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHH---------HHHHhhC-CceEEEcCCCCCCC-CCCCCCccccccccCccChHHH
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERL---------LAEASGY-GSQVVVFPEAFIGG-YPRGTNFGVSIANRTAKGKEDF 93 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~---------i~~Aa~~-gadLIvfPEl~ltG-Y~~~~~~~~~~~~~~~~~~~~~ 93 (105)
++|+|++++.-+..|.+- .++.+. .++.... +.|.||+|=-|..| |.. .| ++..+ ++-.+.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~--~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr---~G-aiaa~-~~v~~~v 74 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDM--AAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLR---AG-AIAAI-APVMDEV 74 (231)
T ss_pred CceEEEEEcCCcCchHHH--HHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccC---cc-hHHhh-HHHHHHH
Confidence 579999999887433332 222221 1111122 57888888766544 332 22 22223 3345667
Q ss_pred HHHHHccc
Q 034056 94 RKYHASAI 101 (105)
Q Consensus 94 ~~~~~~sv 101 (105)
+++++...
T Consensus 75 ~~~a~~g~ 82 (231)
T COG0047 75 REFAEKGK 82 (231)
T ss_pred HHHHHCCC
Confidence 77666443
No 89
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=24.46 E-value=1.3e+02 Score=21.71 Aligned_cols=49 Identities=8% Similarity=0.179 Sum_probs=32.5
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCC---CCCCCCCc
Q 034056 28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIG---GYPRGTNF 78 (105)
Q Consensus 28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~lt---GY~~~~~~ 78 (105)
.+.+-+.+-.+|+.+|++++.+.+++. .+.+++.+-..|-| ||....+|
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~--~~~~i~~~S~~y~T~P~g~~~q~~F 54 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDI--PESRILAVSSFYRTPPLGPQDQPDY 54 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcC--CCCeEEEECCCEEeCCCCCCCCCCc
Confidence 345556666678999999999988653 46777777666542 44444344
No 90
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=24.38 E-value=1e+02 Score=21.05 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=13.7
Q ss_pred HHHHhhC-CceEEEcCCCCC
Q 034056 51 LAEASGY-GSQVVVFPEAFI 69 (105)
Q Consensus 51 i~~Aa~~-gadLIvfPEl~l 69 (105)
+.++.++ |-.+++|||.-.
T Consensus 93 ~~~~l~~~g~~v~ifPeG~~ 112 (187)
T cd06551 93 VARLLSKPGSVVWIFPEGTR 112 (187)
T ss_pred HHHHHhcCCcEEEEeCCccc
Confidence 3344455 889999999864
No 91
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.09 E-value=1.1e+02 Score=18.91 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhCCceEEEcCC
Q 034056 44 LDKAERLLAEASGYGSQVVVFPE 66 (105)
Q Consensus 44 l~~i~~~i~~Aa~~gadLIvfPE 66 (105)
|++..+.....++.|.++|+.|=
T Consensus 9 LR~~lE~A~~La~~GIRFVpiPv 31 (61)
T PF07131_consen 9 LRKALEMAHSLAHIGIRFVPIPV 31 (61)
T ss_pred HHHHHHHHHHHHHcCceeecccc
Confidence 77888888888889999999884
No 92
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=24.01 E-value=1.5e+02 Score=22.99 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=28.2
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCce
Q 034056 28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQ 60 (105)
Q Consensus 28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gad 60 (105)
+-.+|++....+.++|++...+..+.+.+.|+.
T Consensus 98 f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~ 130 (282)
T TIGR01859 98 FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS 130 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 346888888778999999999999999888875
No 93
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=23.99 E-value=1.6e+02 Score=23.17 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=29.3
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceE
Q 034056 28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQV 61 (105)
Q Consensus 28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadL 61 (105)
+..+|++....+.++|++..++..+-|.+.|+-+
T Consensus 100 ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 100 YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3578888887889999999999999999888766
No 94
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.40 E-value=89 Score=25.96 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
.+-+++++.+.++-.+..+.|+++-| .|++||...
T Consensus 237 ~dYdv~kvle~aE~i~~a~idvlIaP-v~lPG~ND~ 271 (414)
T COG2100 237 KDYDVKKVLEVAEYIANAGIDVLIAP-VWLPGVNDD 271 (414)
T ss_pred cccCHHHHHHHHHHHHhCCCCEEEee-eecCCcChH
Confidence 35578888998888888999999888 588888864
No 95
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=22.40 E-value=1.9e+02 Score=21.60 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=24.5
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEE
Q 034056 28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVV 63 (105)
Q Consensus 28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIv 63 (105)
+.++|+.-...+..+-++.+.++...+.+.|+.||+
T Consensus 41 v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liI 76 (221)
T PRK06512 41 VASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALI 76 (221)
T ss_pred ccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 568999866556666666666666556666788877
No 96
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=22.12 E-value=1.3e+02 Score=23.99 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCCceEEEcC
Q 034056 38 NDTPATLDKAERLLAEASGYGSQVVVFP 65 (105)
Q Consensus 38 ~d~~~Nl~~i~~~i~~Aa~~gadLIvfP 65 (105)
.+.+..++...+.++.+.++|+|.||.|
T Consensus 202 ~~~~~sl~~~~~kL~~~ke~gad~ivt~ 229 (293)
T COG2048 202 LNLSVSLKLAKRKLQSAKEAGADCIVTP 229 (293)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 5789999999999999999999999976
No 97
>smart00642 Aamy Alpha-amylase domain.
Probab=21.94 E-value=1e+02 Score=21.90 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhCCceEEE
Q 034056 43 TLDKAERLLAEASGYGSQVVV 63 (105)
Q Consensus 43 Nl~~i~~~i~~Aa~~gadLIv 63 (105)
+.+.+++++++|+++|.++|+
T Consensus 68 t~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 568899999999999998875
No 98
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=21.83 E-value=1.1e+02 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEcC
Q 034056 41 PATLDKAERLLAEASGYGSQVVVFP 65 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~gadLIvfP 65 (105)
..-+..+...++.+.++++||+++-
T Consensus 76 ~~~La~A~~~l~~al~~~~DLlivN 100 (159)
T PF10649_consen 76 PGALAEASAALRRALAEGADLLIVN 100 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4568889999999999999999964
No 99
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=21.75 E-value=2.7e+02 Score=25.79 Aligned_cols=44 Identities=23% Similarity=0.476 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCceEE--EcCCCCCCCCCCCCCcccccccc
Q 034056 39 DTPATLDKAERLLAEASGYGSQVV--VFPEAFIGGYPRGTNFGVSIANR 85 (105)
Q Consensus 39 d~~~Nl~~i~~~i~~Aa~~gadLI--vfPEl~ltGY~~~~~~~~~~~~~ 85 (105)
..+.|++.+..+|++|.++|..+| +||- .+||-.-..||.+ |.|
T Consensus 802 ~~~~~~~~l~~~i~~~~~~~~~~ig~~~p~--~p~y~~t~~fg~~-g~~ 847 (912)
T TIGR02171 802 IINENMNSLKAFIDETAKKGVKVIGTIFPQ--SPGYKNTGSFGRY-GPR 847 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCC--CCCccccCccccc-Ccc
Confidence 478999999999999999999987 4775 6788877777744 444
No 100
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.66 E-value=2e+02 Score=21.66 Aligned_cols=38 Identities=26% Similarity=0.214 Sum_probs=27.2
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEc
Q 034056 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
-|-++|+.....+..+-.+.+++...-+.+.++.+++=
T Consensus 34 Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liIN 71 (211)
T COG0352 34 GVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIN 71 (211)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEec
Confidence 36789998885455555677777777777778888874
No 101
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=21.57 E-value=87 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=14.1
Q ss_pred HHHHhhCCceEEEcCCCCCC
Q 034056 51 LAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 51 i~~Aa~~gadLIvfPEl~lt 70 (105)
++...+.++|+|||.|.-.+
T Consensus 19 ~~~l~~~~~DIi~LQE~~~~ 38 (254)
T TIGR00195 19 LAWLKENQPDVLCLQETKVQ 38 (254)
T ss_pred HHHHHhcCCCEEEEEecccc
Confidence 33344568999999997543
No 102
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.53 E-value=1.2e+02 Score=17.77 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhCCceEEEcCCC
Q 034056 45 DKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
+.+.+.++.-.....+.+.||.+
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm 24 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPM 24 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCC
Confidence 45666666666666888999996
No 103
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=21.39 E-value=1.7e+02 Score=19.99 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=33.8
Q ss_pred cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
|..+..+|..+=.... ++.....+++.+.|+++...+-.++||--+
T Consensus 23 ~~g~~~~i~~~gg~~d-~~~gt~~~~I~~ai~~~~~~~dgVlvl~DL 68 (125)
T TIGR02364 23 MAGDDVTIISAGGTDD-GRLGTSPDKIIEAIEKADNEADGVLIFYDL 68 (125)
T ss_pred HcCCCccEEEEecCCC-CCccchHHHHHHHHHHhcCCCCCEEEEEcC
Confidence 3333567776666665 678888999999999986545668888777
No 104
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.16 E-value=1.3e+02 Score=17.74 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhCCceEEEcC
Q 034056 45 DKAERLLAEASGYGSQVVVFP 65 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIvfP 65 (105)
..+.+.++++.++|+.+|++-
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 445667777788899988753
No 105
>PRK10508 hypothetical protein; Provisional
Probab=21.02 E-value=4e+02 Score=21.08 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=35.2
Q ss_pred cCcceEEEeccCCCCC--CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCC
Q 034056 23 ASTVRATVVQASTIFN--DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72 (105)
Q Consensus 23 ~~~~rIA~vQ~~~~~~--d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY 72 (105)
.++||++++=..+... +..+-++...++++.|-+.|-+-+-++|.+...+
T Consensus 3 ~~~~~ls~ld~~~~~~g~~~~~a~~~~~~~a~~ae~lG~~~~w~~Ehh~~~~ 54 (333)
T PRK10508 3 DKTIPFSVLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTG 54 (333)
T ss_pred CCccceeeEeecCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEeeccCCCCC
Confidence 4457777554433322 4577888888888888888999999999864433
No 106
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=20.51 E-value=2.5e+02 Score=18.00 Aligned_cols=38 Identities=24% Similarity=0.108 Sum_probs=27.7
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEE
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVV 63 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIv 63 (105)
+.++++.......+.+.-++++...+..|...|..-++
T Consensus 125 ~~~g~~~~~~~~~~~~~l~~~a~~al~~a~~~~~~~~~ 162 (165)
T TIGR00254 125 VSIGVACYPGHGLTLEELLKRADEALYQAKKAGRNRVV 162 (165)
T ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 56787777655456888888999999888777655443
No 107
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.43 E-value=1.5e+02 Score=21.87 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEcCC
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVFPE 66 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvfPE 66 (105)
.+++++.+.+.|+.|+.-|++.|+++-
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 457889999999999999999998854
No 108
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=20.36 E-value=3.5e+02 Score=20.83 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=15.3
Q ss_pred HHHHHHhhCCceEEEcCCCCCC
Q 034056 49 RLLAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 49 ~~i~~Aa~~gadLIvfPEl~lt 70 (105)
++++...+.|+|+|++-+-+.+
T Consensus 184 ~~~~~~~~aGad~I~i~d~~a~ 205 (339)
T PRK06252 184 EYAKAQLEAGADVICIADPSAS 205 (339)
T ss_pred HHHHHHHHcCCCEEEeCCCCcc
Confidence 3444455679999999886654
No 109
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=20.18 E-value=1e+02 Score=22.04 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=13.6
Q ss_pred HHHhhCCceEEEcCCCCC
Q 034056 52 AEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 52 ~~Aa~~gadLIvfPEl~l 69 (105)
.++.++|-.+++|||-.-
T Consensus 83 ~~~L~~G~~l~ifPeGtr 100 (212)
T cd07987 83 VRLLREGELVLIFPGGAR 100 (212)
T ss_pred HHHhcCCCEEEEEcCCHH
Confidence 344567889999999754
No 110
>KOG2450 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=20.13 E-value=1.4e+02 Score=25.69 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
-+.-+++++.+|+.+.++|++|+|=-+-
T Consensus 347 ~~~q~ekI~~yi~~~k~eGa~l~~gG~~ 374 (501)
T KOG2450|consen 347 SKTQYEKILGYIESGKKEGATLLCGGVR 374 (501)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEecCcc
Confidence 3566789999999999999999985433
Done!