Query 034056
Match_columns 105
No_of_seqs 171 out of 1012
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4h_A Glutamine dependent NAD 99.5 8.3E-14 2.8E-18 115.1 7.1 52 25-76 6-57 (565)
2 3p8k_A Hydrolase, carbon-nitro 99.4 2.5E-13 8.6E-18 102.4 7.1 53 23-75 18-70 (281)
3 3ivz_A Nitrilase; alpha-beta s 99.4 3.4E-13 1.1E-17 100.2 7.2 50 26-75 2-51 (262)
4 3hkx_A Amidase; alpha-beta-BET 99.4 6.8E-13 2.3E-17 100.1 5.9 54 22-75 17-70 (283)
5 3n05_A NH(3)-dependent NAD(+) 99.3 1.2E-12 4.1E-17 108.1 6.8 55 22-76 1-55 (590)
6 3ilv_A Glutamine-dependent NAD 99.3 1.7E-12 5.8E-17 108.4 6.8 55 22-76 2-56 (634)
7 1f89_A 32.5 kDa protein YLR351 99.3 4.2E-12 1.4E-16 95.2 7.5 54 21-74 6-61 (291)
8 1uf5_A N-carbamyl-D-amino acid 99.3 4E-12 1.4E-16 95.5 6.7 51 24-74 2-54 (303)
9 2e11_A Hydrolase; dimethylarse 99.3 3.3E-12 1.1E-16 94.7 6.1 49 25-74 3-51 (266)
10 3sdb_A Glutamine-dependent NAD 99.3 4.3E-12 1.5E-16 106.9 6.5 57 20-76 7-63 (680)
11 2w1v_A Nitrilase-2, nitrilase 99.3 7.8E-12 2.7E-16 93.3 6.9 51 24-75 2-52 (276)
12 1ems_A Nitfhit, NIT-fragIle hi 99.2 4.2E-11 1.4E-15 94.9 7.1 53 21-74 10-62 (440)
13 2dyu_A Formamidase; AMIF, CEK, 99.1 1E-10 3.4E-15 90.4 5.0 51 25-75 13-69 (334)
14 2vhh_A CG3027-PA; hydrolase; 2 99.1 1.7E-10 6E-15 91.6 6.1 54 21-74 68-128 (405)
15 2uxy_A Aliphatic amidase; nitr 99.1 1.1E-10 3.8E-15 90.5 4.8 51 24-74 11-67 (341)
16 1vyb_A ORF2 contains A reverse 77.6 4.2 0.00015 27.4 5.0 40 25-69 7-46 (238)
17 4fva_A 5'-tyrosyl-DNA phosphod 68.4 3.3 0.00011 28.1 2.6 41 25-68 13-54 (256)
18 4f1h_A Tyrosyl-DNA phosphodies 66.5 3.1 0.00011 27.5 2.1 40 25-67 3-43 (250)
19 3mpr_A Putative endonuclease/e 58.2 21 0.00073 25.5 5.5 24 42-68 30-53 (298)
20 2ei9_A Non-LTR retrotransposon 56.9 6.5 0.00022 28.0 2.5 42 25-73 7-49 (240)
21 3teb_A Endonuclease/exonucleas 55.2 6.3 0.00021 27.1 2.1 42 24-68 2-44 (266)
22 4gz1_A Tyrosyl-DNA phosphodies 55.1 7.2 0.00024 26.3 2.3 40 25-67 9-49 (256)
23 2jc4_A Exodeoxyribonuclease II 49.3 14 0.00048 25.1 3.1 18 52-69 20-37 (256)
24 1iuq_A Glycerol-3-phosphate ac 49.0 16 0.00054 28.9 3.7 27 42-68 207-233 (367)
25 3pdw_A Uncharacterized hydrola 47.1 51 0.0017 22.7 5.9 40 25-64 5-44 (266)
26 1wdu_A TRAS1 ORF2P; four-layer 41.9 26 0.00089 24.0 3.6 37 26-69 20-56 (245)
27 3uhf_A Glutamate racemase; str 39.9 83 0.0028 23.2 6.3 28 39-66 67-94 (274)
28 3l1w_A Uncharacterized protein 39.4 21 0.00073 24.4 2.8 26 40-68 20-45 (257)
29 3g6s_A Putative endonuclease/e 37.3 21 0.0007 24.7 2.5 25 41-68 24-48 (267)
30 3g91_A MTH0212, exodeoxyribonu 34.6 41 0.0014 23.2 3.7 17 53-69 25-41 (265)
31 1ako_A Exonuclease III; AP-end 32.8 18 0.00062 24.7 1.6 24 44-70 15-38 (268)
32 2voa_A AF_EXO, XTHA, exodeoxyr 32.3 24 0.00083 24.0 2.2 23 44-69 16-38 (257)
33 4gew_A 5'-tyrosyl-DNA phosphod 31.2 30 0.001 26.0 2.7 42 24-68 118-160 (362)
34 3u7r_A NADPH-dependent FMN red 28.4 55 0.0019 22.7 3.5 21 47-67 58-78 (190)
35 3obe_A Sugar phosphate isomera 28.4 95 0.0032 22.4 4.9 41 25-65 89-134 (305)
36 1tz9_A Mannonate dehydratase; 28.3 1.4E+02 0.0046 22.2 5.9 39 26-64 69-114 (367)
37 2jc5_A Exodeoxyribonuclease; h 28.0 34 0.0012 23.1 2.3 17 54-70 24-40 (259)
38 3hva_A Protein FIMX; ggdef dig 27.5 1.2E+02 0.0041 19.2 5.7 38 25-62 134-171 (177)
39 3ign_A Diguanylate cyclase; gg 27.2 1.2E+02 0.0041 19.2 4.8 37 25-61 129-165 (177)
40 3l23_A Sugar phosphate isomera 26.9 1.4E+02 0.0048 21.4 5.6 26 40-65 103-128 (303)
41 3mxt_A Pantothenate synthetase 24.9 31 0.0011 26.3 1.7 46 32-78 63-111 (285)
42 3rjt_A Lipolytic protein G-D-S 24.9 90 0.0031 20.1 3.9 25 40-64 112-136 (216)
43 3ngf_A AP endonuclease, family 24.6 1.8E+02 0.006 20.1 6.0 26 39-64 87-112 (269)
44 2g2c_A Putative molybdenum cof 23.9 50 0.0017 22.2 2.5 22 43-64 54-75 (167)
45 3qfm_A SAPH, putative uncharac 23.8 58 0.002 23.4 3.0 40 24-69 10-50 (270)
46 2i7g_A Monooxygenase, AGR_C_41 23.5 2.3E+02 0.008 21.1 6.6 50 23-72 19-76 (376)
47 3bdk_A D-mannonate dehydratase 23.4 1.4E+02 0.0048 23.1 5.3 43 25-67 77-126 (386)
48 3lkv_A Uncharacterized conserv 23.2 45 0.0016 24.0 2.3 19 45-63 56-74 (302)
49 3icl_A EAL/ggdef domain protei 22.6 1.5E+02 0.0051 18.6 4.9 42 25-66 120-162 (171)
50 1ofd_A Ferredoxin-dependent gl 21.9 59 0.002 30.2 3.1 58 9-67 543-603 (1520)
51 3qxb_A Putative xylose isomera 21.6 99 0.0034 22.1 3.9 25 41-65 110-134 (316)
52 4gi5_A Quinone reductase; prot 21.4 1.5E+02 0.005 21.9 4.9 41 21-63 18-58 (280)
53 1zwx_A SMCL, sphingomyelinase- 20.5 29 0.00098 24.4 0.7 14 55-68 43-56 (301)
54 2o3h_A DNA-(apurinic or apyrim 20.3 44 0.0015 23.2 1.6 39 25-70 28-67 (285)
55 1k77_A EC1530, hypothetical pr 20.3 2.1E+02 0.0071 19.3 5.8 25 40-64 80-104 (260)
56 3qyy_A Response regulator; C-D 20.2 1.7E+02 0.0058 18.3 5.6 39 25-64 127-165 (167)
57 1gml_A T-complex protein 1 sub 20.2 1.5E+02 0.0051 20.2 4.4 39 25-63 27-83 (178)
No 1
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=99.46 E-value=8.3e-14 Score=115.10 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=49.8
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
+||||++|+++.++|++.|++++.+++++|+++|||||||||+|+|||++..
T Consensus 6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~D 57 (565)
T 4f4h_A 6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPED 57 (565)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGG
T ss_pred ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHH
Confidence 6999999999999999999999999999999999999999999999999754
No 2
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=99.42 E-value=2.5e-13 Score=102.37 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=49.9
Q ss_pred cCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 23 ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 23 ~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
.++||||++|+++.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus 18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~ 70 (281)
T 3p8k_A 18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLE 70 (281)
T ss_dssp TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGG
T ss_pred CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChh
Confidence 45799999999998899999999999999999999999999999999999864
No 3
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=99.42 E-value=3.4e-13 Score=100.20 Aligned_cols=50 Identities=38% Similarity=0.515 Sum_probs=48.1
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
||||++|+++.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus 2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~ 51 (262)
T 3ivz_A 2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFE 51 (262)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCS
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCC
Confidence 79999999999899999999999999999999999999999999999864
No 4
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=99.36 E-value=6.8e-13 Score=100.11 Aligned_cols=54 Identities=30% Similarity=0.338 Sum_probs=50.1
Q ss_pred ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
+.++||||++|+++..+|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus 17 ~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~ 70 (283)
T 3hkx_A 17 RGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPS 70 (283)
T ss_dssp TTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHH
T ss_pred cCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChH
Confidence 345699999999999889999999999999999999999999999999999864
No 5
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.34 E-value=1.2e-12 Score=108.08 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=50.8
Q ss_pred ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
|+++||||++|+++.++|++.|++++.+++++|+++|+|||||||+++|||++..
T Consensus 1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d 55 (590)
T 3n05_A 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 55 (590)
T ss_dssp -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGG
T ss_pred CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHH
Confidence 3457999999999998999999999999999999999999999999999999854
No 6
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.32 E-value=1.7e-12 Score=108.36 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=50.3
Q ss_pred ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
+++++|||++|+++.++|++.|++++.+++++|+++|+|||||||+++|||++..
T Consensus 2 ~M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~d 56 (634)
T 3ilv_A 2 SLSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCED 56 (634)
T ss_dssp --CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGG
T ss_pred CCCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHH
Confidence 3457999999999998999999999999999999999999999999999999854
No 7
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=99.31 E-value=4.2e-12 Score=95.24 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=48.4
Q ss_pred cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHH--hhCCceEEEcCCCCCCCCCC
Q 034056 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEA--SGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~A--a~~gadLIvfPEl~ltGY~~ 74 (105)
+|++++|||++|+++..+|++.|++++.+++++| +++|+|||||||++++||..
T Consensus 6 ~m~~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~ 61 (291)
T 1f89_A 6 ILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYST 61 (291)
T ss_dssp SBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCH
T ss_pred cccccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCCh
Confidence 3556799999999955589999999999999999 88999999999999999964
No 8
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=99.29 E-value=4e-12 Score=95.50 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=47.7
Q ss_pred CcceEEEeccCCCC--CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 24 STVRATVVQASTIF--NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~--~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
+++|||++|+++.. +|++.|++++.+++++|+++|+|||||||++++||..
T Consensus 2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~ 54 (303)
T 1uf5_A 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFP 54 (303)
T ss_dssp CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGG
T ss_pred ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCc
Confidence 46899999999886 7999999999999999999999999999999999964
No 9
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=99.29 E-value=3.3e-12 Score=94.72 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=46.4
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
++|||++|+++.++|++.|++++.+++++| ++|+|||||||++++||+.
T Consensus 3 ~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~ 51 (266)
T 2e11_A 3 DLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSN 51 (266)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCS
T ss_pred ccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCCh
Confidence 589999999999899999999999999999 8999999999999999964
No 10
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.27 E-value=4.3e-12 Score=106.90 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=52.8
Q ss_pred ccccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056 20 DSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76 (105)
Q Consensus 20 ~~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~ 76 (105)
.|.++++|||++|+++.++|++.|++++.+++++|+++|++||||||+++|||++..
T Consensus 7 ~~~~g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~d 63 (680)
T 3sdb_A 7 AYQHGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIED 63 (680)
T ss_dssp TGGGTEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGG
T ss_pred HhhCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHH
Confidence 455678999999999998999999999999999999999999999999999999753
No 11
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=99.27 E-value=7.8e-12 Score=93.28 Aligned_cols=51 Identities=29% Similarity=0.409 Sum_probs=47.3
Q ss_pred CcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~ 75 (105)
+++|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus 2 ~~~~va~vQ~~~~-~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~ 52 (276)
T 2w1v_A 2 STFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTT 52 (276)
T ss_dssp CEEEEEEEECCCC-SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTT
T ss_pred CccEEEEEecccc-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHH
Confidence 3589999999976 89999999999999999999999999999999999764
No 12
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.17 E-value=4.2e-11 Score=94.89 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=48.7
Q ss_pred cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
|.++++|||++|+++. .|+++|++++.+++++|+++|+|||||||+|++||..
T Consensus 10 m~~~~~kVa~vQ~~~~-~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~ 62 (440)
T 1ems_A 10 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLN 62 (440)
T ss_dssp CCCSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSS
T ss_pred cccCCceEEEEecCCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcc
Confidence 5566799999999987 7999999999999999999999999999999988764
No 13
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=99.07 E-value=1e-10 Score=90.35 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=45.1
Q ss_pred cceEEEeccCC----CCCCHHHHHHHHHHHHHHHhh--CCceEEEcCCCCCCCCCCC
Q 034056 25 TVRATVVQAST----IFNDTPATLDKAERLLAEASG--YGSQVVVFPEAFIGGYPRG 75 (105)
Q Consensus 25 ~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~--~gadLIvfPEl~ltGY~~~ 75 (105)
++|||++|+++ .++|+++|++++.+++++|++ +|+|||||||++++||++.
T Consensus 13 ~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~ 69 (334)
T 2dyu_A 13 GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTA 69 (334)
T ss_dssp CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTT
T ss_pred ccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCC
Confidence 58999999984 345889999999999999987 7999999999999998754
No 14
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=99.06 E-value=1.7e-10 Score=91.57 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=47.2
Q ss_pred cccCcceEEEeccCCCC-------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056 21 SSASTVRATVVQASTIF-------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~-------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~ 74 (105)
.+.+++|||++|+++.. +++++|++++.+++++|+++|+|||||||+|++||..
T Consensus 68 ~~~~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~ 128 (405)
T 2vhh_A 68 RKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128 (405)
T ss_dssp SCCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC
T ss_pred cCCCCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccc
Confidence 44557999999998753 3679999999999999999999999999999999864
No 15
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=99.06 E-value=1.1e-10 Score=90.46 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=45.3
Q ss_pred CcceEEEeccCC----CCCCHHHHHHHHHHHHHHHhh--CCceEEEcCCCCCCCCCC
Q 034056 24 STVRATVVQAST----IFNDTPATLDKAERLLAEASG--YGSQVVVFPEAFIGGYPR 74 (105)
Q Consensus 24 ~~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~--~gadLIvfPEl~ltGY~~ 74 (105)
.++|||++|+++ .++|++.|++++.+++++|++ +|+|||||||++++||++
T Consensus 11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~ 67 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMY 67 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCC
T ss_pred CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCC
Confidence 468999999984 346899999999999999987 799999999999999865
No 16
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=77.60 E-value=4.2 Score=27.41 Aligned_cols=40 Identities=5% Similarity=0.165 Sum_probs=23.4
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
.+||...-.... ......+.+.++|++ .++|+|||.|...
T Consensus 7 ~lri~t~Nv~g~--~~~~~~~~~~~~i~~---~~~DIv~LQE~~~ 46 (238)
T 1vyb_A 7 HITILTLNINGL--NSAIKRHRLASWIKS---QDPSVCCIQETHL 46 (238)
T ss_dssp CEEEEEEECSCC--CSHHHHHHHHHHHHH---HCCSEEEEECCCC
T ss_pred cceEEEEecccC--CchhhHHHHHHHHHH---cCCCEEEEecccC
Confidence 466665544422 222233455555554 4799999999854
No 17
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=68.35 E-value=3.3 Score=28.06 Aligned_cols=41 Identities=5% Similarity=0.111 Sum_probs=24.1
Q ss_pred cceEEEeccCCC-CCCHHHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 25 TVRATVVQASTI-FNDTPATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 25 ~~rIA~vQ~~~~-~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
+|||...-+... ..+.....+.+.+.|++ .++|+|||.|..
T Consensus 13 ~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~---~~pDIi~LQEv~ 54 (256)
T 4fva_A 13 EVSVMSWNIDGLDGRSLLTRMKAVAHIVKN---VNPDILFLQEVV 54 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHH---HCCSEEEEEEEC
T ss_pred EEEEEEEecCCCCCcCHHHHHHHHHHHHHH---cCCCEEEEEecC
Confidence 455554443211 12345555566666654 479999999974
No 18
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=66.49 E-value=3.1 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=23.9
Q ss_pred cceEEEeccCCC-CCCHHHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 25 TVRATVVQASTI-FNDTPATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 25 ~~rIA~vQ~~~~-~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
+|||...-+... ..+....++.+.+.|++ .++|+|||.|.
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~---~~pDIi~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL---YTPDVVFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH---HCCSEEEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH---cCCCEEEEEeC
Confidence 456654433211 12445556666666654 47999999995
No 19
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=58.16 E-value=21 Score=25.45 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
...+++.+.|+ +.++|||||.|..
T Consensus 30 ~r~~~i~~~i~---~~~~DIv~LQEv~ 53 (298)
T 3mpr_A 30 QRYPVIAQMVQ---YHDFDIFGTQECF 53 (298)
T ss_dssp HHHHHHHHHHH---HTTCSEEEEESBC
T ss_pred HHHHHHHHHHH---HcCCCEEEEeCCC
Confidence 33445555554 4589999999984
No 20
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=56.91 E-value=6.5 Score=27.99 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=25.9
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCC-CCCC
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFI-GGYP 73 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~l-tGY~ 73 (105)
+|||+ |.++. + .....+++.+++++ .++|+||++|... .||.
T Consensus 7 ~mki~--s~Nvn-~-~r~~~~~l~~~l~~---~~~DIl~LQEt~~~~gy~ 49 (240)
T 2ei9_A 7 RLRIG--QINLG-G-AEDATRELPSIARD---LGLDIVLVQEQYSMVGFL 49 (240)
T ss_dssp EEEEE--EEECT-T-CHHHHHTHHHHHHH---HTCSEEEEESCCTTSSSE
T ss_pred cceEE--EEecC-c-cHHHHHHHHHHHHH---cCCCEEEeecceEcCCce
Confidence 36666 55554 2 23344555555554 5799999999863 4554
No 21
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=55.17 E-value=6.3 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=26.8
Q ss_pred CcceEEEeccCCCC-CCHHHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 24 STVRATVVQASTIF-NDTPATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~-~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
+++||+..-+.... .+....++++.+.|++ .++|+|||.|..
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~---~~~DIi~LQEv~ 44 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAE---KQYDVIAMQEVN 44 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHH---HTCSEEEEEEEE
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHh---cCCCEEEEEEcc
Confidence 35677655443221 2456677777777765 479999999984
No 22
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=55.08 E-value=7.2 Score=26.26 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=23.9
Q ss_pred cceEEEeccCCC-CCCHHHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 25 TVRATVVQASTI-FNDTPATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 25 ~~rIA~vQ~~~~-~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
++||..--+... ..+..+..+.+.+.|++ .++|+|||.|.
T Consensus 9 ~l~v~swNi~g~~~~~~~~r~~~i~~~i~~---~~pDIi~LQEv 49 (256)
T 4gz1_A 9 TISFITWNIDGLDGCNLPERARGVCSCLAL---YSPDVVFLQEV 49 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHH---HCCSEEEEEEE
T ss_pred cEEEEEEEcCCCcCcCHHHHHHHHHHHHHH---cCCCEEEEEcC
Confidence 466665444321 11345555666666654 47999999995
No 23
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=49.30 E-value=14 Score=25.09 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=13.5
Q ss_pred HHHhhCCceEEEcCCCCC
Q 034056 52 AEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 52 ~~Aa~~gadLIvfPEl~l 69 (105)
+...+.++|+|||.|...
T Consensus 20 ~~i~~~~~DIv~LQE~~~ 37 (256)
T 2jc4_A 20 NLLADNPPDILVLQELKL 37 (256)
T ss_dssp HHHHSSCCSEEEEECCCS
T ss_pred HHHHhcCCCEEEEEeecc
Confidence 333456899999999864
No 24
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=48.95 E-value=16 Score=28.87 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 42 ATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
+|++.+.+.++...+.|.-+++|||-.
T Consensus 207 ~n~ksl~~~~~~Lk~GG~sI~IFPEGT 233 (367)
T 1iuq_A 207 ANTRSLKEMALLLRGGSQLIWIAPSGG 233 (367)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEECTTCS
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 455555555555556688999999963
No 25
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=47.09 E-value=51 Score=22.69 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=32.6
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEc
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
++|+-++=+.-+..+...-+....+.|+++.++|..+++.
T Consensus 5 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~la 44 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFV 44 (266)
T ss_dssp CCSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEE
Confidence 4788888887776676767788899999999999998876
No 26
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=41.87 E-value=26 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=22.7
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
|||. |.++. +... ..+.+.++++ +.++|+||+.|...
T Consensus 20 lri~--s~Nv~-~~~~-~~~~l~~~i~---~~~~DIv~lQE~~~ 56 (245)
T 1wdu_A 20 YRVL--QANLQ-RKKL-ATAELAIEAA---TRKAAIALIQEPYV 56 (245)
T ss_dssp EEEE--EEECT-TCHH-HHHHHHHHHH---HHTCSEEEEESCCC
T ss_pred eeee--eeecc-ccHH-HHHHHHHHHh---hcCCCEEEEEcccc
Confidence 5555 66665 3322 3444544444 45799999999865
No 27
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=39.86 E-value=83 Score=23.25 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHhhCCceEEEcCC
Q 034056 39 DTPATLDKAERLLAEASGYGSQVVVFPE 66 (105)
Q Consensus 39 d~~~Nl~~i~~~i~~Aa~~gadLIvfPE 66 (105)
++++-.+.+.+.++...++|+|+||.+=
T Consensus 67 s~e~i~~~~~~~~~~L~~~g~d~IVIAC 94 (274)
T 3uhf_A 67 DKDTIIKFCLEALDFFEQFQIDMLIIAC 94 (274)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 5677777777888777788999999873
No 28
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=39.42 E-value=21 Score=24.44 Aligned_cols=26 Identities=8% Similarity=-0.060 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
++...+++.+.|++. ++|+|||.|..
T Consensus 20 w~~r~~~i~~~i~~~---~~DIv~LQEv~ 45 (257)
T 3l1w_A 20 WSFRKEAVCQLINFH---DWSLCCIQEVR 45 (257)
T ss_dssp HHHHHHHHHHHHHHH---CCSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 335566666666654 79999999964
No 29
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=37.27 E-value=21 Score=24.72 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 41 PATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
....+++.+.|++ .++|+|||.|..
T Consensus 24 ~~r~~~i~~~i~~---~~~DIv~LQEv~ 48 (267)
T 3g6s_A 24 QYRKDRVCQFIKD---HELDIVGMQEVL 48 (267)
T ss_dssp GGTHHHHHHHHHH---TTCSEEEEESBC
T ss_pred HHHHHHHHHHHHH---cCCCEEEEecCC
Confidence 3455555555554 489999999984
No 30
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=34.59 E-value=41 Score=23.23 Aligned_cols=17 Identities=6% Similarity=-0.113 Sum_probs=12.6
Q ss_pred HHhhCCceEEEcCCCCC
Q 034056 53 EASGYGSQVVVFPEAFI 69 (105)
Q Consensus 53 ~Aa~~gadLIvfPEl~l 69 (105)
...+.++|+|||.|...
T Consensus 25 ~i~~~~~DIv~LQEt~~ 41 (265)
T 3g91_A 25 WFMEEKPDILCLQEIKA 41 (265)
T ss_dssp HHHHHCCSEEEEECCCS
T ss_pred HHHhcCCCEEEEEeccc
Confidence 33345899999999754
No 31
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=32.83 E-value=18 Score=24.70 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhCCceEEEcCCCCCC
Q 034056 44 LDKAERLLAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 44 l~~i~~~i~~Aa~~gadLIvfPEl~lt 70 (105)
.+.+.+.|++ .++|+|||.|....
T Consensus 15 ~~~i~~~i~~---~~~Dii~LQE~~~~ 38 (268)
T 1ako_A 15 PHQLEAIVEK---HQPDVIGLQETKVH 38 (268)
T ss_dssp HHHHHHHHHH---HCCSEEEEECCCCC
T ss_pred HHHHHHHHHH---cCCCEEEEEeccCC
Confidence 4455555554 57999999998643
No 32
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=32.30 E-value=24 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhCCceEEEcCCCCC
Q 034056 44 LDKAERLLAEASGYGSQVVVFPEAFI 69 (105)
Q Consensus 44 l~~i~~~i~~Aa~~gadLIvfPEl~l 69 (105)
.+++.++|++ .++|+|||.|...
T Consensus 16 ~~~i~~~i~~---~~~Dii~lQE~~~ 38 (257)
T 2voa_A 16 LHIVIPWLKE---NKPDILCMQETKV 38 (257)
T ss_dssp HHHHHHHHHH---HCCSEEEEECCCC
T ss_pred HHHHHHHHhh---cCCCEEEEEEeec
Confidence 3445555543 4799999999864
No 33
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=31.23 E-value=30 Score=26.04 Aligned_cols=42 Identities=5% Similarity=0.092 Sum_probs=24.1
Q ss_pred CcceEEEeccCCCC-CCHHHHHHHHHHHHHHHhhCCceEEEcCCCC
Q 034056 24 STVRATVVQASTIF-NDTPATLDKAERLLAEASGYGSQVVVFPEAF 68 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~-~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ 68 (105)
..|||..--+.... .+..+-.+.+.++|++ .++|+|||.|..
T Consensus 118 ~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~---~~PDIV~LQEv~ 160 (362)
T 4gew_A 118 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN---VNPDILFLQEVV 160 (362)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHHH---HCCSEEEEEEEC
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH---cCCCEEEEEcCC
Confidence 34666654443211 1344445555555554 479999999963
No 34
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=28.41 E-value=55 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=14.0
Q ss_pred HHHHHHHHhhCCceEEEcCCC
Q 034056 47 AERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 47 i~~~i~~Aa~~gadLIvfPEl 67 (105)
+.++.++..+..+=+|+.||+
T Consensus 58 ~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 58 VLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp HHHHHHHHHTSSEEEEECCCB
T ss_pred HHHHHHHHHhCCcEEEechhh
Confidence 344444445557789999996
No 35
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=28.36 E-value=95 Score=22.35 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.3
Q ss_pred cceEEEeccCCCC-----CCHHHHHHHHHHHHHHHhhCCceEEEcC
Q 034056 25 TVRATVVQASTIF-----NDTPATLDKAERLLAEASGYGSQVVVFP 65 (105)
Q Consensus 25 ~~rIA~vQ~~~~~-----~d~~~Nl~~i~~~i~~Aa~~gadLIvfP 65 (105)
-+++..+...... ...++.++.+.+.++.|.+-|++.|++|
T Consensus 89 GL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~ 134 (305)
T 3obe_A 89 GLRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQP 134 (305)
T ss_dssp TCEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeC
Confidence 3677766654321 1246778899999999999999999987
No 36
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=28.33 E-value=1.4e+02 Score=22.19 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=29.9
Q ss_pred ceEEEeccCCC-------CCCHHHHHHHHHHHHHHHhhCCceEEEc
Q 034056 26 VRATVVQASTI-------FNDTPATLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 26 ~rIA~vQ~~~~-------~~d~~~Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
+++.+++.... ....++.++.+.+.++.+.+-|++.||+
T Consensus 69 L~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 69 LALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp CEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 67776653332 1346788999999999999999999998
No 37
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=28.03 E-value=34 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=13.0
Q ss_pred HhhCCceEEEcCCCCCC
Q 034056 54 ASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 54 Aa~~gadLIvfPEl~lt 70 (105)
..+.++|+|||.|....
T Consensus 24 i~~~~~DIi~LQE~~~~ 40 (259)
T 2jc5_A 24 IAASGADIVCVQELKAQ 40 (259)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhcCCCEEEEEEecch
Confidence 34568999999998643
No 38
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=27.51 E-value=1.2e+02 Score=19.17 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEE
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVV 62 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLI 62 (105)
.+.+|++..+....+.+.-++++...+.+|.+.|-.-+
T Consensus 134 ~~siGi~~~~~~~~~~~~ll~~A~~Al~~ak~~g~~~~ 171 (177)
T 3hva_A 134 TLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQI 171 (177)
T ss_dssp CEEEEEEEECTTCCCHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 46788888766545789999999999999987754333
No 39
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=27.17 E-value=1.2e+02 Score=19.25 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=28.9
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceE
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQV 61 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadL 61 (105)
.+.+|++.......+.++-++++...+.+|.+.|-.-
T Consensus 129 ~~siGi~~~~~~~~~~~~ll~~A~~Al~~Ak~~g~n~ 165 (177)
T 3ign_A 129 TVSMGIAQLTETPENYMQWMQKADEALYKAKESGRNK 165 (177)
T ss_dssp CEEEEEEECCSCCSSHHHHHHHHHHHHHHHHHTTSSS
T ss_pred EEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 4678888877654578899999999999998776433
No 40
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=26.95 E-value=1.4e+02 Score=21.36 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEcC
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVFP 65 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvfP 65 (105)
.++.++.+.+.++.|.+-|++.|++|
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~ 128 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQP 128 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 36778999999999999999999987
No 41
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=24.93 E-value=31 Score=26.25 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=27.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCC---CCCCCCCCCCCc
Q 034056 32 QASTIFNDTPATLDKAERLLAEASGYGSQVVVFPE---AFIGGYPRGTNF 78 (105)
Q Consensus 32 Q~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPE---l~ltGY~~~~~~ 78 (105)
|+.+. .|.+..=+.+.+=++.+.+.|+|+|..|+ +|-.|+..+...
T Consensus 63 QF~~~-EDl~~YPRtle~D~~ll~~~gvD~vF~P~~~emYP~g~~t~v~~ 111 (285)
T 3mxt_A 63 QFGPN-EDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNFSTYVDM 111 (285)
T ss_dssp GCCTT-SCTTTSCCCHHHHHHHHHHTTCSEEECCCHHHHSCTTCCCCCCC
T ss_pred ccCCc-hhhhcCCCCHHHHHHHHHHCCCCEEECCCHHHcCCCCCeeEEEc
Confidence 77665 45443323333444444566999999996 677676554433
No 42
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.90 E-value=90 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEc
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
+++-.+.+.++++++.+.++++|++
T Consensus 112 ~~~~~~~l~~~i~~~~~~~~~vil~ 136 (216)
T 3rjt_A 112 IDEYRDTLRHLVATTKPRVREMFLL 136 (216)
T ss_dssp HHHHHHHHHHHHHHHGGGSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5556667777777776669999987
No 43
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=24.57 E-value=1.8e+02 Score=20.10 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCceEEEc
Q 034056 39 DTPATLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 39 d~~~Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
..++.++.+.+.++.|.+-|++.|++
T Consensus 87 ~r~~~~~~~~~~i~~A~~lGa~~v~~ 112 (269)
T 3ngf_A 87 REQEFRDNVDIALHYALALDCRTLHA 112 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 35678899999999999999998886
No 44
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=23.89 E-value=50 Score=22.24 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhCCceEEEc
Q 034056 43 TLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 43 Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
+.+.+.+.++++.++++|+|+.
T Consensus 54 d~~~I~~~l~~a~~~~~DlVit 75 (167)
T 2g2c_A 54 GYDTVVEAIATALKQGARFIIT 75 (167)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEE
Confidence 4466777777777767999974
No 45
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=23.81 E-value=58 Score=23.43 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=22.9
Q ss_pred CcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEc-CCCCC
Q 034056 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVF-PEAFI 69 (105)
Q Consensus 24 ~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvf-PEl~l 69 (105)
.++||+++- |.=.|+..+.+.++.+.+.++|.|++ --++.
T Consensus 10 ~~~~i~~iS------DiHg~~~~l~~vl~~~~~~~~D~ii~~GDlv~ 50 (270)
T 3qfm_A 10 DMTKIALLS------DIHGNTTALEAVLADARQLGVDEYWLLGDILM 50 (270)
T ss_dssp -CEEEEEEC------CCTTCHHHHHHHHHHHHHTTCCEEEECSCCSS
T ss_pred cccEEEEEe------cCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 457888653 22234555666666666668887654 44443
No 46
>2i7g_A Monooxygenase, AGR_C_4197P; alpha-beta, TIM barrel, helix-bundle, structural genomics, P protein structure initiative; HET: MSE; 1.73A {Agrobacterium tumefaciens str}
Probab=23.46 E-value=2.3e+02 Score=21.10 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=33.9
Q ss_pred cCcceEEEecc-CCCC-------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCC
Q 034056 23 ASTVRATVVQA-STIF-------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72 (105)
Q Consensus 23 ~~~~rIA~vQ~-~~~~-------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY 72 (105)
...||+++.-+ .... .+....++.+.++.+.|-+.|-|-+.++|.+..+|
T Consensus 19 ~~~m~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~A~~AE~~Gfd~~w~~eh~~~~~ 76 (376)
T 2i7g_A 19 FQGMELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGLGEHHRPDY 76 (376)
T ss_dssp --CCEEEEEECCBCCSSCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCCSTTB
T ss_pred CCCeEEEEEeccccCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCC
Confidence 44689998632 2110 12356777888888888888999999999876544
No 47
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=23.37 E-value=1.4e+02 Score=23.08 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=32.1
Q ss_pred cceEEEeccCCC-------CCCHHHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 25 TVRATVVQASTI-------FNDTPATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 25 ~~rIA~vQ~~~~-------~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
-+++.+++..+. ..+.++.++.+.+.|+.+++-|+++||...+
T Consensus 77 GL~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi~~v~~nf~ 126 (386)
T 3bdk_A 77 GLEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVCYNFM 126 (386)
T ss_dssp TCEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 377777653221 2357899999999999999999999997433
No 48
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=23.23 E-value=45 Score=23.98 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhCCceEEE
Q 034056 45 DKAERLLAEASGYGSQVVV 63 (105)
Q Consensus 45 ~~i~~~i~~Aa~~gadLIv 63 (105)
.+....+++...+++|+|+
T Consensus 56 ~~~~~~~~~l~~~~~DlIi 74 (302)
T 3lkv_A 56 AIAVQIARQFVGENPDVLV 74 (302)
T ss_dssp HHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHhcCCcEEE
Confidence 3444555566667888887
No 49
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=22.56 E-value=1.5e+02 Score=18.56 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=29.9
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCC-ceEEEcCC
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYG-SQVVVFPE 66 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~g-adLIvfPE 66 (105)
.+.+|++.......+.++-++++...+.+|.++| -.+.++.+
T Consensus 120 ~~siGia~~~~~~~~~~~ll~~A~~Al~~ak~~g~~~~~~~~~ 162 (171)
T 3icl_A 120 SVSIGIAVSPADGETMEQLLRNADTAMYHAKSRGKNNYQFFSP 162 (171)
T ss_dssp CEEEEEEETTTTCSSHHHHHHHHHHHHHHHHHHCSSEEEECCC
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 3678887765554578889999999999987665 45555443
No 50
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=21.88 E-value=59 Score=30.21 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=40.6
Q ss_pred CccccccccccccccCcceEEEeccCCC---CCCHHHHHHHHHHHHHHHhhCCceEEEcCCC
Q 034056 9 APLLAEVDMGTDSSASTVRATVVQASTI---FNDTPATLDKAERLLAEASGYGSQVVVFPEA 67 (105)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~rIA~vQ~~~~---~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl 67 (105)
.|+|-+-++.+... ..++...+-+... ....++-++++.+...+|.+.|+.+|||---
T Consensus 543 ~Pil~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~l~~al~~l~~~a~~av~~g~~iliLsDr 603 (1520)
T 1ofd_A 543 SPLVNEVELQAIKT-GQLQVAEVSTLYDLDGVNSLEDALTNLVKTAIATVQAGAEILVLTDR 603 (1520)
T ss_dssp CSBCCHHHHHHHHH-SSSCEEEEECEEECSSSCCHHHHHHHHHHHHHHHHHTTCSEEEEESS
T ss_pred CCccCHHHHHHHhc-CCCceEEEEEEEeCCchhHHHHHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 47776666665522 2355555444332 1358999999999999999999999998764
No 51
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=21.65 E-value=99 Score=22.09 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhCCceEEEcC
Q 034056 41 PATLDKAERLLAEASGYGSQVVVFP 65 (105)
Q Consensus 41 ~~Nl~~i~~~i~~Aa~~gadLIvfP 65 (105)
++.++.+.+.|+.|.+-|++.|+.|
T Consensus 110 ~~~~~~~~~~i~~A~~lGa~~v~~~ 134 (316)
T 3qxb_A 110 SLGYQHLKRAIDMTAAMEVPATGMP 134 (316)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEec
Confidence 5678889999999999999999865
No 52
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=21.42 E-value=1.5e+02 Score=21.91 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=25.3
Q ss_pred cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEE
Q 034056 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVV 63 (105)
Q Consensus 21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIv 63 (105)
+.++.|||=+|...+.. ..-|-....+.++.+.++|.++-+
T Consensus 18 ~~m~~MKiLII~aHP~~--~S~n~aL~~~~~~~l~~~G~eV~v 58 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEP--RSLNGALKNFAIRHLQQAGHEVQV 58 (280)
T ss_dssp ----CCEEEEEECCSCT--TSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred chhhCCeEEEEEeCCCC--ccHHHHHHHHHHHHHHHCCCeEEE
Confidence 33456899999887763 234555566677777777766554
No 53
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=20.49 E-value=29 Score=24.36 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=11.9
Q ss_pred hhCCceEEEcCCCC
Q 034056 55 SGYGSQVVVFPEAF 68 (105)
Q Consensus 55 a~~gadLIvfPEl~ 68 (105)
...++|+|||.|..
T Consensus 43 ~~~~~DIv~LQEv~ 56 (301)
T 1zwx_A 43 YMKNNDVVILNEAF 56 (301)
T ss_dssp GGSSCSEEEEEEEC
T ss_pred ccCCCCEEEEeccc
Confidence 45689999999986
No 54
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=20.28 E-value=44 Score=23.24 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=22.4
Q ss_pred cceEEEeccCCCCCCHHHHHHH-HHHHHHHHhhCCceEEEcCCCCCC
Q 034056 25 TVRATVVQASTIFNDTPATLDK-AERLLAEASGYGSQVVVFPEAFIG 70 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~-i~~~i~~Aa~~gadLIvfPEl~lt 70 (105)
.+||... ++. + .....++ +.++|+ +.++|+|||.|....
T Consensus 28 ~l~v~t~--Ni~-~-~~~~~~~~i~~~i~---~~~~DIi~LQE~~~~ 67 (285)
T 2o3h_A 28 TLKIASW--NVD-G-LRAWIKKKGLDWVK---EEAPDILCLQETKCS 67 (285)
T ss_dssp CEEEEEE--ECS-S-HHHHHHTTHHHHHH---HHCCSEEEEECCCCC
T ss_pred ceEEEEE--ecc-c-ChhhhhhhHHHHHH---hcCCCEEEEEEeecc
Confidence 4666644 443 2 2222333 444444 457999999998654
No 55
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=20.26 E-value=2.1e+02 Score=19.33 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEEc
Q 034056 40 TPATLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 40 ~~~Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
.++.++.+.+.++.|.+-|++.|++
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~ 104 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHV 104 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4688999999999999999999987
No 56
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=20.20 E-value=1.7e+02 Score=18.31 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=30.8
Q ss_pred cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEc
Q 034056 25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVF 64 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvf 64 (105)
.+.+++...... .+.++-++++...+.+|.+.|-.-+++
T Consensus 127 ~~s~G~~~~~~~-~~~~~ll~~A~~Al~~Ak~~g~~~~~~ 165 (167)
T 3qyy_A 127 HVSAGSAVCEVG-IDATELYRRADAAMYRAKFSGGRRLVR 165 (167)
T ss_dssp CEEEEEEECCTT-CCHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred EEEEEEEEecCC-CCHHHHHHHHHHHHHHHHHHCCCceec
Confidence 467787777665 688999999999999998887666654
No 57
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=20.18 E-value=1.5e+02 Score=20.19 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=24.1
Q ss_pred cceEEEeccCCCCCCHHH------------------HHHHHHHHHHHHhhCCceEEE
Q 034056 25 TVRATVVQASTIFNDTPA------------------TLDKAERLLAEASGYGSQVVV 63 (105)
Q Consensus 25 ~~rIA~vQ~~~~~~d~~~------------------Nl~~i~~~i~~Aa~~gadLIv 63 (105)
.-||++++........+. --+.+.+.+++-.+.|+++|+
T Consensus 27 nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl 83 (178)
T 1gml_A 27 NPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVI 83 (178)
T ss_dssp SCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 368999998776432221 123455666677788999775
Done!