BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034057
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJK|A Chain A, Putative Molybdopterin Converting Factor, Subunit 1 From
Pyrococcus Furiosus, Pfu-562899-001
Length = 98
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNL-EEIRGCMV----- 76
S+++KV +FAR R L G+ + +E+ G+ +D + ++ R EE+ G
Sbjct: 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDAD 67
Query: 77 --LALNEEYTNASVIVNEKDELAIIPPISGG 105
+A+N Y + + + D + + PP+SGG
Sbjct: 68 VNIAVNGRYVSWDEELKDGDVVGVFPPVSGG 98
>pdb|2Q5W|D Chain D, The X-Ray Crystal Structure Of Molybdopterin Synthase From
Staphylococcus Aureus
pdb|2QIE|B Chain B, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|G Chain G, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|J Chain J, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|D Chain D, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
Length = 77
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA 86
+KVL+FA +D+ + + T Q + L R+P + + +A+NEE+
Sbjct: 1 MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKK--FQVAVNEEFVQK 58
Query: 87 SVIVNEKDELAIIPPISGG 105
S + D +A+IPP+SGG
Sbjct: 59 SDFIQPNDTVALIPPVSGG 77
>pdb|1FM0|D Chain D, Molybdopterin Synthase (MoadMOAE)
pdb|1FMA|D Chain D, Molybdopterin Synthase (MoadMOAE)
pdb|1JWB|D Chain D, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|D Chain D, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|D Chain D, Structure Of The Native Moeb-Moad Protein Complex
Length = 81
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIA----RFP-NLEEIRGCMVLALNE 81
IKVLFFA+ R+L G TD EV+ T + L + +A R+ LE+ G ++ A+N+
Sbjct: 2 IKVLFFAQVRELVG-TDA-TEVAADFPTVEALRQHMAAQSDRWALALED--GKLLAAVNQ 57
Query: 82 EYTNASVIVNEKDELAIIPPISGG 105
+ + + DE+A PP++GG
Sbjct: 58 TLVSFDHPLTDGDEVAFFPPVTGG 81
>pdb|1NVI|D Chain D, Orthorhombic Crystal Form Of Molybdopterin Synthase
Length = 81
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIA----RFP-NLEEIRGCMVLALNE 81
+KVLFFA+ R+L G TD EV+ T + L + +A R+ LE+ G ++ A+N+
Sbjct: 2 VKVLFFAQVRELVG-TDA-TEVAADFPTVEALRQHMAAQSDRWALALED--GKLLAAVNQ 57
Query: 82 EYTNASVIVNEKDELAIIPPISGG 105
+ + + DE+A PP++GG
Sbjct: 58 TLVSFDHPLTDGDEVAFFPPVTGG 81
>pdb|3BII|D Chain D, Crystal Structure Of Activated Mpt Synthase
Length = 81
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIA----RFP-NLEEIRGCMVLALNE 81
IKVLFFA+ R+L G TD EV+ T + L + +A R+ LE+ G ++ A+N+
Sbjct: 2 IKVLFFAQVRELVG-TDA-TEVAADFPTVEALRQHMAAQSDRWALALED--GKLLAAVNQ 57
Query: 82 EYTNASVIVNEKDELAIIPPISG 104
+ + + DE+A PP++G
Sbjct: 58 TLVSFDHPLTDGDEVAFFPPVTG 80
>pdb|3PO0|A Chain A, Crystal Structure Of Samp1 From Haloferax Volcanii
Length = 89
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEE 82
S++ K+ FA ++ G + ++V +T D L+ L+ P LE V + E
Sbjct: 1 GSMEWKL--FADLAEVAGSRTVRVDVDGDATVGDALDALVGAHPALE----SRVFGDDGE 54
Query: 83 -YTNASVIVN-----------EKDELAIIPPISGG 105
Y + +V+ N DELA+ PP+SGG
Sbjct: 55 LYDHINVLRNGEAAALGEATAAGDELALFPPVSGG 89
>pdb|2L52|A Chain A, Solution Structure Of The Small Archaeal Modifier Protein
1 (Samp1) From Methanosarcina Acetivorans
Length = 99
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEI---RG-----CMVL 77
++KV FA R+ G ++PL G D L L ++P L+ + +G ++L
Sbjct: 5 EVKVKLFANLREAAGTPELPL---SGEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILIL 61
Query: 78 ----------ALNEEYTNASVIVNEKDELAIIPPISGG 105
++ + DE+ I+PP+SGG
Sbjct: 62 CGSINILINGNNIRHLEGLETLLKDSDEIGILPPVSGG 99
>pdb|2L83|A Chain A, A Protein From Haloferax Volcanii
Length = 95
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 31 FFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEE-YTNASVI 89
FA ++ G + ++V +T D L+ L+ P LE V + E Y + +V+
Sbjct: 5 LFADLAEVAGSRTVRVDVDGDATVGDALDALVGAHPALE----SRVFGDDGELYDHINVL 60
Query: 90 VN-----------EKDELAIIPPISGG 105
N DELA+ PP+SGG
Sbjct: 61 RNGEAAALGEATAAGDELALFPPVSGG 87
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLE--EIRGCMVL 77
E SI + F RD T PL V+C ++ ++KL+ F LE +I G L
Sbjct: 17 EKSINQNLDFLRNYRDSYNRT--PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTAL 72
>pdb|3RPF|C Chain C, Protein-Protein Complex Of Subunit 1 And 2 Of
Molybdopterin-Converting Factor From Helicobacter Pylori
26695
pdb|3RPF|D Chain D, Protein-Protein Complex Of Subunit 1 And 2 Of
Molybdopterin-Converting Factor From Helicobacter Pylori
26695
Length = 74
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 68 LEEIRGCMVLALNEEYT-NASVIVNEKDELAIIPPISGG 105
L+E G +ALN+ N + + + D ++++PP+ GG
Sbjct: 36 LKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPPVCGG 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,598,046
Number of Sequences: 62578
Number of extensions: 80428
Number of successful extensions: 160
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 14
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)