Query 034057
Match_columns 105
No_of_seqs 183 out of 1046
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02799 Molybdopterin synthas 99.9 1.5E-27 3.2E-32 150.9 9.9 82 24-105 1-82 (82)
2 TIGR01682 moaD molybdopterin c 99.9 2.9E-25 6.3E-30 139.9 9.6 79 27-105 1-80 (80)
3 PRK11130 moaD molybdopterin sy 99.9 6.8E-25 1.5E-29 138.9 9.7 79 26-105 1-81 (81)
4 cd00754 MoaD Ubiquitin domain 99.9 6.5E-24 1.4E-28 132.6 9.4 79 27-105 1-80 (80)
5 TIGR01687 moaD_arch MoaD famil 99.9 1E-23 2.2E-28 134.7 9.4 78 27-105 1-88 (88)
6 PF02597 ThiS: ThiS family; I 99.9 5.3E-22 1.1E-26 123.0 6.5 74 29-105 1-77 (77)
7 COG1977 MoaD Molybdopterin con 99.8 4.2E-21 9.2E-26 122.6 6.5 80 26-105 1-84 (84)
8 cd01764 Urm1 Urm1-like ubuitin 99.8 5.8E-19 1.2E-23 115.0 8.3 79 27-105 1-94 (94)
9 KOG3474 Molybdopterin converti 99.8 9.9E-19 2.2E-23 108.6 4.7 82 24-105 1-84 (84)
10 PRK08364 sulfur carrier protei 99.6 2.1E-15 4.7E-20 93.1 7.5 67 26-105 4-70 (70)
11 cd00565 ThiS ThiaminS ubiquiti 99.5 6.2E-14 1.4E-18 85.1 5.3 56 43-105 6-65 (65)
12 PRK06437 hypothetical protein; 99.4 5.8E-13 1.3E-17 81.7 6.5 59 40-105 9-67 (67)
13 PRK06944 sulfur carrier protei 99.4 1.1E-12 2.4E-17 79.2 6.3 55 43-105 7-65 (65)
14 TIGR01683 thiS thiamine biosyn 99.4 1.8E-12 4E-17 78.4 5.9 56 43-105 5-64 (64)
15 PRK08053 sulfur carrier protei 99.3 2.6E-12 5.6E-17 78.3 5.9 56 43-105 7-66 (66)
16 PRK06488 sulfur carrier protei 99.3 2.6E-12 5.6E-17 77.9 5.6 54 44-105 8-65 (65)
17 PF14451 Ub-Mut7C: Mut7-C ubiq 99.3 4.9E-12 1.1E-16 80.4 7.1 72 25-102 2-77 (81)
18 COG2104 ThiS Sulfur transfer p 99.2 4.9E-11 1.1E-15 73.6 6.8 56 43-105 9-68 (68)
19 PRK05659 sulfur carrier protei 99.2 4E-11 8.7E-16 72.6 5.8 55 44-105 8-66 (66)
20 PRK05863 sulfur carrier protei 99.2 5.2E-11 1.1E-15 72.4 5.0 55 44-105 8-65 (65)
21 PRK01777 hypothetical protein; 99.1 2E-10 4.4E-15 75.0 6.7 74 24-103 3-78 (95)
22 PRK07440 hypothetical protein; 99.1 3.3E-10 7.2E-15 70.0 5.7 55 44-105 12-70 (70)
23 PRK06083 sulfur carrier protei 99.1 8.1E-10 1.7E-14 70.7 7.4 56 43-105 25-84 (84)
24 PF09138 Urm1: Urm1 (Ubiquitin 99.0 5.5E-10 1.2E-14 73.1 6.0 80 26-105 1-96 (96)
25 PRK07696 sulfur carrier protei 99.0 9.6E-10 2.1E-14 67.3 4.9 55 44-105 8-67 (67)
26 COG5131 URM1 Ubiquitin-like pr 98.7 8.9E-08 1.9E-12 61.8 6.5 81 25-105 1-96 (96)
27 KOG4146 Ubiquitin-like protein 98.7 1.2E-07 2.6E-12 61.6 7.1 83 23-105 3-101 (101)
28 PRK11840 bifunctional sulfur c 98.6 9.9E-08 2.2E-12 74.1 5.8 55 44-105 8-66 (326)
29 PF03658 Ub-RnfH: RnfH family 98.3 2E-06 4.2E-11 55.1 5.3 73 25-103 1-75 (84)
30 PF06805 Lambda_tail_I: Bacter 98.2 4.9E-06 1.1E-10 52.9 6.0 76 26-105 2-82 (82)
31 cd01668 TGS_RelA_SpoT TGS_RelA 97.8 0.00014 3E-09 42.1 6.3 51 44-99 9-59 (60)
32 cd01616 TGS The TGS domain, na 97.7 0.00023 5E-09 40.1 6.6 51 44-99 9-59 (60)
33 PF02824 TGS: TGS domain; Int 97.5 0.00013 2.7E-09 43.6 3.6 52 43-99 8-59 (60)
34 cd01806 Nedd8 Nebb8-like ubiq 97.5 0.0014 3.1E-08 39.6 7.8 71 25-105 1-76 (76)
35 cd00196 UBQ Ubiquitin-like pro 97.4 0.0018 4E-08 35.4 7.4 59 40-101 6-69 (69)
36 cd01666 TGS_DRG_C TGS_DRG_C: 97.4 0.00059 1.3E-08 42.7 5.5 54 43-99 16-74 (75)
37 PF14453 ThiS-like: ThiS-like 97.4 0.00069 1.5E-08 40.4 5.4 49 43-100 7-55 (57)
38 cd01803 Ubiquitin Ubiquitin. U 97.3 0.0034 7.4E-08 37.9 7.9 71 25-105 1-76 (76)
39 cd01804 midnolin_N Ubiquitin-l 97.2 0.004 8.7E-08 38.6 7.4 72 24-105 1-76 (78)
40 COG2914 Uncharacterized protei 97.0 0.0031 6.6E-08 41.3 5.8 72 25-102 4-77 (99)
41 cd01802 AN1_N ubiquitin-like d 96.7 0.023 5.1E-07 37.3 8.3 72 24-105 27-103 (103)
42 PTZ00044 ubiquitin; Provisiona 96.7 0.03 6.6E-07 33.9 8.4 71 25-105 1-76 (76)
43 cd01793 Fubi Fubi ubiquitin-li 96.6 0.035 7.7E-07 33.8 8.4 69 25-105 1-74 (74)
44 cd01667 TGS_ThrRS_N TGS _ThrRS 96.6 0.019 4E-07 32.3 6.6 51 45-100 10-60 (61)
45 cd01805 RAD23_N Ubiquitin-like 96.6 0.03 6.5E-07 34.0 7.8 66 25-99 1-72 (77)
46 KOG1769 Ubiquitin-like protein 96.3 0.078 1.7E-06 34.9 8.7 74 24-105 18-96 (99)
47 cd01669 TGS_Ygr210_C TGS_Ygr21 96.2 0.032 7E-07 34.8 6.6 53 44-99 23-75 (76)
48 cd01812 BAG1_N Ubiquitin-like 96.0 0.062 1.3E-06 31.9 7.0 65 25-100 1-70 (71)
49 cd01807 GDX_N ubiquitin-like d 96.0 0.12 2.7E-06 31.2 8.2 66 25-100 1-71 (74)
50 cd01763 Sumo Small ubiquitin-r 95.9 0.15 3.3E-06 32.1 8.7 63 39-105 20-87 (87)
51 cd01810 ISG15_repeat2 ISG15 ub 95.9 0.078 1.7E-06 32.2 7.1 61 42-105 9-74 (74)
52 cd01809 Scythe_N Ubiquitin-lik 95.8 0.13 2.9E-06 30.4 7.7 66 25-100 1-71 (72)
53 cd01800 SF3a120_C Ubiquitin-li 95.7 0.093 2E-06 32.1 6.9 63 40-105 6-73 (76)
54 TIGR00691 spoT_relA (p)ppGpp s 95.3 0.071 1.5E-06 45.4 7.2 53 43-100 369-421 (683)
55 PRK11092 bifunctional (p)ppGpp 95.0 0.071 1.5E-06 45.6 6.1 53 43-100 395-447 (702)
56 PRK10872 relA (p)ppGpp synthet 94.7 0.13 2.7E-06 44.4 6.8 54 43-101 413-466 (743)
57 COG4723 Phage-related protein, 94.6 0.09 1.9E-06 38.3 5.1 75 26-105 5-88 (198)
58 cd01791 Ubl5 UBL5 ubiquitin-li 94.3 0.7 1.5E-05 28.3 8.0 57 39-99 10-71 (73)
59 cd01792 ISG15_repeat1 ISG15 ub 94.2 0.59 1.3E-05 28.7 7.7 68 24-99 2-74 (80)
60 TIGR00601 rad23 UV excision re 94.2 0.28 6.1E-06 39.1 7.6 66 25-99 1-73 (378)
61 COG0317 SpoT Guanosine polypho 93.9 0.16 3.4E-06 43.5 5.8 54 43-101 396-449 (701)
62 TIGR02988 YaaA_near_RecF S4 do 93.7 0.044 9.6E-07 32.1 1.6 28 71-98 30-58 (59)
63 smart00213 UBQ Ubiquitin homol 93.6 0.48 1E-05 27.0 6.0 53 25-88 1-53 (64)
64 PF00240 ubiquitin: Ubiquitin 93.2 0.49 1.1E-05 27.8 5.7 55 42-99 6-65 (69)
65 cd04938 TGS_Obg-like TGS_Obg-l 93.0 0.41 8.9E-06 29.7 5.3 51 43-99 23-75 (76)
66 PF11976 Rad60-SLD: Ubiquitin- 93.0 0.38 8.3E-06 28.6 5.1 56 42-99 11-71 (72)
67 cd01769 UBL Ubiquitin-like dom 92.1 1.4 2.9E-05 25.3 6.8 55 42-99 8-67 (69)
68 PF01479 S4: S4 domain; Inter 92.0 0.42 9.1E-06 26.4 4.1 21 76-96 27-48 (48)
69 PRK00413 thrS threonyl-tRNA sy 91.9 0.53 1.1E-05 39.3 6.2 51 45-100 11-61 (638)
70 PRK12444 threonyl-tRNA synthet 91.0 0.75 1.6E-05 38.6 6.3 51 45-100 15-65 (639)
71 PRK07570 succinate dehydrogena 91.0 1.4 3E-05 33.3 7.1 57 44-100 20-101 (250)
72 smart00363 S4 S4 RNA-binding d 90.7 0.37 7.9E-06 26.5 3.0 26 75-100 26-52 (60)
73 cd01808 hPLIC_N Ubiquitin-like 90.2 2.6 5.6E-05 25.1 8.0 54 44-100 12-70 (71)
74 PRK08640 sdhB succinate dehydr 89.7 0.88 1.9E-05 34.2 5.1 77 23-100 4-98 (249)
75 PF08817 YukD: WXG100 protein 89.7 1 2.2E-05 27.7 4.6 57 42-98 13-78 (79)
76 cd01796 DDI1_N DNA damage indu 88.7 3.6 7.9E-05 24.6 6.6 55 41-98 9-69 (71)
77 cd01797 NIRF_N amino-terminal 88.5 4 8.7E-05 25.1 6.7 67 25-100 1-73 (78)
78 PF11834 DUF3354: Domain of un 88.1 1.9 4.2E-05 26.4 5.0 67 26-99 3-69 (69)
79 cd01813 UBP_N UBP ubiquitin pr 88.0 4.3 9.3E-05 24.7 7.6 65 25-99 1-72 (74)
80 PF14478 DUF4430: Domain of un 87.5 0.75 1.6E-05 27.6 2.9 25 74-98 40-67 (68)
81 PLN02560 enoyl-CoA reductase 87.0 2.8 6E-05 32.6 6.4 24 44-67 16-39 (308)
82 PF10302 DUF2407: DUF2407 ubiq 86.7 3.4 7.3E-05 26.8 5.8 54 27-88 3-59 (97)
83 PF13019 Telomere_Sde2: Telome 86.4 6.7 0.00015 28.0 7.6 77 26-105 2-88 (162)
84 PF13881 Rad60-SLD_2: Ubiquiti 86.3 5.4 0.00012 26.5 6.7 60 25-90 3-66 (111)
85 COG0522 RpsD Ribosomal protein 86.3 1.1 2.5E-05 32.9 3.7 27 72-98 116-143 (205)
86 PRK12385 fumarate reductase ir 86.2 1.5 3.3E-05 32.7 4.5 76 24-99 6-92 (244)
87 TIGR00384 dhsB succinate dehyd 85.8 1.8 3.9E-05 31.6 4.7 53 43-95 16-78 (220)
88 cd00165 S4 S4/Hsp/ tRNA synthe 85.0 1.5 3.3E-05 24.6 3.2 26 75-100 26-52 (70)
89 PRK12577 succinate dehydrogena 84.7 2.2 4.8E-05 33.2 4.9 59 42-100 19-98 (329)
90 PF13085 Fer2_3: 2Fe-2S iron-s 84.7 3.1 6.7E-05 27.7 5.0 58 43-100 20-91 (110)
91 PRK11025 23S rRNA pseudouridyl 84.2 3.2 6.9E-05 31.9 5.5 28 73-100 43-70 (317)
92 cd01798 parkin_N amino-termina 84.1 6.6 0.00014 23.1 6.8 55 42-99 9-68 (70)
93 PRK13552 frdB fumarate reducta 83.5 3.7 8.1E-05 30.6 5.5 58 43-100 25-93 (239)
94 COG2501 S4-like RNA binding pr 83.4 3 6.5E-05 26.0 4.2 48 51-98 11-61 (73)
95 cd01794 DC_UbP_C dendritic cel 82.5 8.3 0.00018 23.1 6.8 55 42-99 9-68 (70)
96 PRK11507 ribosome-associated p 82.1 2.4 5.2E-05 26.2 3.3 47 52-98 12-61 (70)
97 COG1188 Ribosome-associated he 81.8 2.3 5E-05 28.0 3.4 27 73-99 32-58 (100)
98 cd01799 Hoil1_N Ubiquitin-like 81.1 10 0.00022 23.2 6.7 56 40-99 11-73 (75)
99 smart00666 PB1 PB1 domain. Pho 80.5 5.2 0.00011 24.1 4.6 35 25-67 2-36 (81)
100 PF06241 DUF1012: Protein of u 80.4 2.3 5E-05 31.2 3.2 31 74-104 119-152 (206)
101 COG1163 DRG Predicted GTPase [ 80.1 5.8 0.00013 31.6 5.7 55 43-99 305-363 (365)
102 PF13275 S4_2: S4 domain; PDB: 79.9 0.77 1.7E-05 27.9 0.6 48 51-98 7-57 (65)
103 PLN00129 succinate dehydrogena 79.9 11 0.00024 28.9 7.1 74 25-99 44-131 (276)
104 PF12053 DUF3534: Domain of un 79.4 2.5 5.5E-05 29.6 3.1 47 25-79 1-48 (145)
105 COG0564 RluA Pseudouridylate s 78.8 4.1 8.9E-05 31.2 4.4 52 50-102 11-64 (289)
106 PRK12576 succinate dehydrogena 78.7 4.8 0.0001 30.7 4.8 44 42-85 25-76 (279)
107 PF08154 NLE: NLE (NUC135) dom 78.2 9.1 0.0002 22.8 5.0 55 26-85 1-58 (65)
108 PF00498 FHA: FHA domain; Int 78.1 1.7 3.6E-05 25.3 1.7 25 74-98 41-67 (68)
109 PF00564 PB1: PB1 domain; Int 78.0 2.5 5.5E-05 25.6 2.6 38 24-68 1-38 (84)
110 PRK05327 rpsD 30S ribosomal pr 75.2 4.4 9.6E-05 29.5 3.6 30 72-101 115-145 (203)
111 cd01790 Herp_N Homocysteine-re 75.2 5.8 0.00013 24.9 3.6 54 44-98 16-76 (79)
112 PRK09602 translation-associate 75.2 6.2 0.00013 31.5 4.7 53 44-100 341-394 (396)
113 PRK12386 fumarate reductase ir 75.0 9.9 0.00022 28.7 5.5 61 23-85 3-71 (251)
114 COG0479 FrdB Succinate dehydro 74.4 11 0.00024 28.3 5.6 75 24-100 2-89 (234)
115 PF11543 UN_NPL4: Nuclear pore 73.0 6.5 0.00014 24.5 3.5 55 43-100 15-79 (80)
116 COG5227 SMT3 Ubiquitin-like pr 72.6 5.6 0.00012 26.0 3.2 66 25-98 23-93 (103)
117 KOG0010 Ubiquitin-like protein 72.0 30 0.00066 28.8 7.9 66 23-99 14-84 (493)
118 TIGR00005 rluA_subfam pseudour 70.5 7.4 0.00016 29.3 4.0 27 73-99 29-56 (299)
119 PLN02908 threonyl-tRNA synthet 70.3 11 0.00024 32.2 5.3 51 45-100 61-112 (686)
120 cd06407 PB1_NLP A PB1 domain i 69.4 16 0.00034 22.9 4.7 34 25-66 1-34 (82)
121 cd01801 Tsc13_N Ubiquitin-like 66.8 22 0.00048 21.4 4.9 50 49-98 20-74 (77)
122 TIGR01017 rpsD_bact ribosomal 66.3 8.1 0.00018 28.1 3.3 29 72-100 112-141 (200)
123 PF01802 Herpes_V23: Herpesvir 65.1 5.4 0.00012 31.0 2.3 52 53-105 54-114 (296)
124 PRK10475 23S rRNA pseudouridin 65.0 8.4 0.00018 29.6 3.3 28 72-99 28-55 (290)
125 CHL00113 rps4 ribosomal protei 64.8 8.4 0.00018 28.2 3.1 29 72-100 111-140 (201)
126 PRK10839 16S rRNA pseudouridyl 64.0 9.7 0.00021 27.8 3.4 25 75-99 25-50 (232)
127 PRK11180 rluD 23S rRNA pseudou 62.8 13 0.00029 28.6 4.1 50 51-100 17-69 (325)
128 TIGR03069 PS_II_S4 photosystem 62.6 17 0.00037 27.4 4.5 48 51-98 183-232 (257)
129 cd01815 BMSC_UbP_N Ubiquitin-l 62.0 31 0.00066 21.4 4.9 50 49-99 18-73 (75)
130 PHA03258 Capsid triplex subuni 61.7 6.7 0.00014 30.7 2.2 53 53-105 58-120 (304)
131 PHA03259 Capsid triplex subuni 61.3 6.8 0.00015 30.6 2.2 54 52-105 53-114 (302)
132 PRK10348 ribosome-associated h 59.2 15 0.00032 25.3 3.4 24 75-98 34-57 (133)
133 PHA03257 Capsid triplex subuni 58.3 8.3 0.00018 30.3 2.2 52 53-105 59-122 (316)
134 PRK05950 sdhB succinate dehydr 55.6 17 0.00036 26.7 3.4 59 42-100 18-88 (232)
135 PRK12575 succinate dehydrogena 53.4 61 0.0013 24.1 6.1 57 44-100 23-91 (235)
136 PTZ00258 GTP-binding protein; 52.1 35 0.00076 27.4 4.9 51 43-99 315-385 (390)
137 PF10844 DUF2577: Protein of u 51.7 12 0.00026 24.2 1.8 20 85-105 72-91 (100)
138 cd00060 FHA Forkhead associate 49.9 24 0.00052 21.3 3.0 25 75-99 66-92 (102)
139 cd01760 RBD Ubiquitin-like dom 49.5 59 0.0013 19.8 6.2 57 42-100 10-71 (72)
140 cd06402 PB1_p62 The PB1 domain 49.2 68 0.0015 20.4 5.4 22 49-70 24-45 (87)
141 cd06408 PB1_NoxR The PB1 domai 48.2 71 0.0015 20.4 5.2 35 24-66 2-36 (86)
142 smart00314 RA Ras association 46.6 47 0.001 20.3 4.0 27 40-66 14-40 (90)
143 COG4630 XdhA Xanthine dehydrog 45.7 21 0.00046 29.2 2.7 43 29-71 248-292 (493)
144 cd01768 RA RA (Ras-associating 45.7 54 0.0012 19.8 4.1 27 40-66 11-37 (87)
145 PRK06259 succinate dehydrogena 44.1 94 0.002 25.1 6.3 75 25-99 4-87 (486)
146 PF09358 UBA_e1_C: Ubiquitin-a 43.8 58 0.0012 21.9 4.3 24 43-66 34-57 (125)
147 PLN00051 RNA-binding S4 domain 43.7 56 0.0012 24.9 4.7 47 52-98 192-240 (267)
148 PF13510 Fer2_4: 2Fe-2S iron-s 43.5 37 0.00081 20.9 3.1 54 44-97 11-78 (82)
149 TIGR02958 sec_mycoba_snm4 secr 42.5 94 0.002 25.4 6.1 60 41-100 11-79 (452)
150 COG3383 Uncharacterized anaero 41.4 47 0.001 29.6 4.3 56 43-98 12-76 (978)
151 cd00458 SugarP_isomerase Sugar 40.2 89 0.0019 21.6 5.0 44 42-86 20-63 (169)
152 COG1716 FOG: FHA domain [Signa 38.8 36 0.00078 23.4 2.8 26 74-99 130-155 (191)
153 cd05992 PB1 The PB1 domain is 38.4 85 0.0018 18.5 4.6 25 43-67 11-36 (81)
154 KOG3439 Protein conjugation fa 36.0 1.4E+02 0.003 20.2 5.5 70 16-89 20-91 (116)
155 PF08825 E2_bind: E2 binding d 35.9 33 0.00072 21.6 2.0 19 46-64 1-19 (84)
156 COG5417 Uncharacterized small 35.2 1.2E+02 0.0025 19.2 4.4 67 24-99 4-81 (81)
157 COG0490 Putative regulatory, l 34.4 54 0.0012 23.4 3.1 26 74-99 116-144 (162)
158 smart00455 RBD Raf-like Ras-bi 33.8 96 0.0021 18.6 3.8 54 42-98 10-67 (70)
159 cd01787 GRB7_RA RA (RAS-associ 33.8 1.2E+02 0.0026 19.3 4.4 25 41-65 12-36 (85)
160 cd01783 DAGK_delta_RA Ubiquiti 33.8 1.2E+02 0.0027 19.7 4.5 48 31-80 8-56 (97)
161 PF14560 Ubiquitin_2: Ubiquiti 33.1 81 0.0018 19.3 3.5 25 42-66 14-38 (87)
162 PRK09908 xanthine dehydrogenas 33.0 1.7E+02 0.0038 20.7 5.5 56 20-85 2-62 (159)
163 PF09379 FERM_N: FERM N-termin 33.0 60 0.0013 19.1 2.8 36 42-79 7-42 (80)
164 TIGR00478 tly hemolysin TlyA f 32.5 52 0.0011 24.4 2.9 25 75-99 25-50 (228)
165 PF02080 TrkA_C: TrkA-C domain 32.4 54 0.0012 18.7 2.5 25 76-100 32-58 (71)
166 cd02954 DIM1 Dim1 family; Dim1 32.3 1.5E+02 0.0032 19.6 4.9 30 72-101 69-98 (114)
167 TIGR03859 PQQ_PqqD coenzyme PQ 32.2 55 0.0012 20.1 2.6 20 48-67 40-59 (81)
168 PF00788 RA: Ras association ( 32.1 83 0.0018 18.8 3.4 24 43-66 18-41 (93)
169 KOG3483 Uncharacterized conser 31.9 1.2E+02 0.0025 19.3 4.0 56 44-101 29-89 (94)
170 TIGR00008 infA translation ini 31.8 1.1E+02 0.0025 18.5 3.9 23 29-51 5-27 (68)
171 PF10262 Rdx: Rdx family; Int 30.0 1.3E+02 0.0028 18.0 4.2 31 54-84 17-54 (76)
172 PF05402 PqqD: Coenzyme PQQ sy 30.0 58 0.0013 18.7 2.3 19 49-67 27-45 (68)
173 cd01795 USP48_C USP ubiquitin- 29.5 1.7E+02 0.0038 19.4 6.4 55 42-99 15-75 (107)
174 cd01775 CYR1_RA Ubiquitin doma 29.2 75 0.0016 20.8 2.9 23 43-65 14-36 (97)
175 KOG0011 Nucleotide excision re 28.9 2.4E+02 0.0051 22.6 6.1 66 25-99 1-72 (340)
176 PRK02079 pyrroloquinoline quin 28.9 64 0.0014 20.4 2.5 21 48-68 45-65 (88)
177 smart00295 B41 Band 4.1 homolo 28.3 1.8E+02 0.0038 19.9 5.0 34 25-65 4-37 (207)
178 KOG0245 Kinesin-like protein [ 28.2 55 0.0012 30.0 2.7 26 73-98 521-546 (1221)
179 COG2517 Predicted RNA-binding 27.6 90 0.0019 23.1 3.3 27 75-101 142-173 (219)
180 PF14483 Cut8_M: Cut8 dimerisa 27.1 50 0.0011 17.8 1.5 18 53-70 14-31 (38)
181 PF10264 Stork_head: Winged he 26.9 66 0.0014 20.3 2.3 19 51-69 29-47 (80)
182 PF10407 Cytokin_check_N: Cdc1 26.6 1.6E+02 0.0035 18.1 4.1 49 49-99 10-68 (73)
183 TIGR03028 EpsE polysaccharide 26.5 1.6E+02 0.0035 21.5 4.7 53 44-98 175-234 (239)
184 KOG3367 Hypoxanthine-guanine p 25.8 1.4E+02 0.0031 21.9 4.1 44 25-68 110-155 (216)
185 KOG0005 Ubiquitin-like protein 25.5 1.4E+02 0.003 18.1 3.4 34 25-65 1-34 (70)
186 cd06410 PB1_UP2 Uncharacterize 25.5 1.1E+02 0.0024 19.7 3.2 29 38-66 19-47 (97)
187 PF02626 AHS2: Allophanate hyd 25.4 67 0.0014 24.5 2.5 31 74-104 54-86 (271)
188 KOG0313 Microtubule binding pr 25.4 1.9E+02 0.004 23.7 5.0 60 23-85 4-67 (423)
189 KOG0257 Kynurenine aminotransf 25.2 75 0.0016 26.0 2.8 16 87-102 111-126 (420)
190 PF13128 DUF3954: Protein of u 24.7 40 0.00086 19.5 0.9 16 89-104 14-29 (50)
191 cd01400 6PGL 6PGL: 6-Phosphogl 23.5 2.1E+02 0.0045 20.6 4.7 44 42-87 23-66 (219)
192 PF02991 Atg8: Autophagy prote 23.0 2E+02 0.0042 18.8 4.1 42 44-87 35-76 (104)
193 cd01611 GABARAP Ubiquitin doma 23.0 1.5E+02 0.0032 19.6 3.5 42 44-87 43-84 (112)
194 PF14533 USP7_C2: Ubiquitin-sp 22.8 1.2E+02 0.0025 22.1 3.3 37 27-66 21-58 (213)
195 smart00797 AHS2 Allophanate hy 22.8 1E+02 0.0023 23.6 3.1 31 74-104 54-86 (280)
196 PF06251 Caps_synth_GfcC: Caps 22.4 72 0.0016 23.3 2.1 64 28-98 130-201 (229)
197 PLN00189 40S ribosomal protein 22.1 1.1E+02 0.0023 22.5 2.9 27 72-98 131-158 (194)
198 COG3967 DltE Short-chain dehyd 21.8 32 0.00069 26.0 0.1 33 43-82 54-86 (245)
199 PF06463 Mob_synth_C: Molybden 21.4 1.9E+02 0.0041 19.3 3.8 46 52-104 23-69 (128)
200 TIGR03354 VI_FHA type VI secre 21.3 87 0.0019 25.1 2.5 25 76-100 68-96 (396)
201 PRK04980 hypothetical protein; 20.9 1.1E+02 0.0023 20.1 2.5 20 50-69 73-92 (102)
202 COG3840 ThiQ ABC-type thiamine 20.8 1.1E+02 0.0023 22.9 2.7 32 74-105 6-37 (231)
203 PF01561 Hanta_G2: Hantavirus 20.7 73 0.0016 26.3 1.9 18 88-105 188-205 (485)
204 PF04014 Antitoxin-MazE: Antid 20.6 81 0.0018 17.1 1.6 12 89-100 20-31 (47)
205 PF02196 RBD: Raf-like Ras-bin 20.6 1.7E+02 0.0036 17.5 3.1 43 43-88 12-56 (71)
206 PF03831 PhnA: PhnA protein; 20.2 50 0.0011 19.5 0.7 12 88-99 8-19 (56)
207 KOG1654 Microtubule-associated 20.2 2.9E+02 0.0062 18.6 4.8 58 25-85 29-86 (116)
208 TIGR00686 phnA alkylphosphonat 20.0 83 0.0018 21.0 1.8 14 87-100 48-61 (109)
No 1
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=99.95 E-value=1.5e-27 Score=150.94 Aligned_cols=82 Identities=68% Similarity=1.134 Sum_probs=78.5
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPIS 103 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvs 103 (105)
+|+|+|+|||.+|+.+|..++++++++++|+++|++.|..+||++.+++..+.+++|++++++++.|++||+|+||||||
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~Ppvs 80 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIPPIS 80 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeCCCC
Confidence 48999999999999999989999999999999999999999999988878889999999999999999999999999999
Q ss_pred CC
Q 034057 104 GG 105 (105)
Q Consensus 104 GG 105 (105)
||
T Consensus 81 GG 82 (82)
T PLN02799 81 GG 82 (82)
T ss_pred CC
Confidence 99
No 2
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=99.93 E-value=2.9e-25 Score=139.90 Aligned_cols=79 Identities=42% Similarity=0.688 Sum_probs=74.1
Q ss_pred EEEEecHHhHhhcCCCceEEEeCCC-CCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 27 IKVLFFARARDLTGLTDMPLEVSCG-STTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 27 V~V~~fg~lre~~g~~~~~vev~~~-~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
|+|+|||.+|+.+|+.++.++++.+ .|+++|++.|.++||++.+.++.++|+||+++++.+++|++||+|+||||||||
T Consensus 1 v~V~~fa~lr~~~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 1 IKVLYFARLREQAGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred CEEEEeHHHHHHhCCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeCCCCCC
Confidence 6899999999999998889999876 899999999999999877667789999999999999999999999999999999
No 3
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=99.92 E-value=6.8e-25 Score=138.91 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=68.6
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhh--cceeEEEECCeecCCCCccCCCCEEEEEcCCC
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEI--RGCMVLALNEEYTNASVIVNEKDELAIIPPIS 103 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~--~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvs 103 (105)
+|+|+|||.+|+.+|.++.+++ +++.|+++|++.|.++||.+... ...++++||+++++++++|++||||+||||||
T Consensus 1 ~v~V~~Fa~lre~~g~~~~~v~-~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~PPVs 79 (81)
T PRK11130 1 MIKVLFFAQVRELVGTDALELA-ADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVT 79 (81)
T ss_pred CEEEEEeHHHHHHhCCceEEec-CCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeCCCC
Confidence 3899999999999997655554 34689999999999999976432 35678999999999999999999999999999
Q ss_pred CC
Q 034057 104 GG 105 (105)
Q Consensus 104 GG 105 (105)
||
T Consensus 80 GG 81 (81)
T PRK11130 80 GG 81 (81)
T ss_pred CC
Confidence 99
No 4
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=99.91 E-value=6.5e-24 Score=132.57 Aligned_cols=79 Identities=43% Similarity=0.735 Sum_probs=72.9
Q ss_pred EEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCc-hhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNL-EEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 27 V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l-~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
|+|+|||.|++.+|+.+.+++++++.|+++|+++|..+||.+ ....+.++|+|||++++++++|++||+|+|+||++||
T Consensus 1 i~v~~f~~l~~~~g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 1 VKVLYFARLREAAGKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred CEEEEeHHHHHHhCCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCCCCCC
Confidence 589999999999999888999998999999999999999973 2345789999999999999999999999999999999
No 5
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=99.91 E-value=1e-23 Score=134.66 Aligned_cols=78 Identities=33% Similarity=0.615 Sum_probs=70.7
Q ss_pred EEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchh--------hcceeEEEECCeecCCCC--ccCCCCEE
Q 034057 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEE--------IRGCMVLALNEEYTNASV--IVNEKDEL 96 (105)
Q Consensus 27 V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~--------~~~~~~vaVNg~~v~~d~--~L~dGDeV 96 (105)
|+|+|||.+|+++|+++.+++++ +.|+++|++.|.++||++.. +++.++|+||+++++++. +|++||+|
T Consensus 1 v~V~~fa~lre~~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev 79 (88)
T TIGR01687 1 VRVKYFATLRDITGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVV 79 (88)
T ss_pred CEEEEEhHHHHHhCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEE
Confidence 68999999999999988899987 89999999999999997543 245799999999998776 99999999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
+||||+|||
T Consensus 80 ~i~PpvsGG 88 (88)
T TIGR01687 80 AIFPPVSGG 88 (88)
T ss_pred EEeCCCcCC
Confidence 999999999
No 6
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=99.86 E-value=5.3e-22 Score=122.95 Aligned_cols=74 Identities=39% Similarity=0.715 Sum_probs=69.8
Q ss_pred EEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC---CCccCCCCEEEEEcCCCCC
Q 034057 29 VLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA---SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 29 V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~---d~~L~dGDeVaiiPPvsGG 105 (105)
|+|||.+++.+| +..++++++.|+++|++.|..+||.+. ..+.++++|||+++++ ++.|++||+|+||||+|||
T Consensus 1 V~~fg~~~~~~g--~~~~~~~~~~tv~~ll~~l~~~~p~~~-~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 1 VKFFGELREIAG--EEEIEVPEGSTVRDLLEALAERYPELA-LRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEETTHHHHHHT--EEEEEESSTSBHHHHHHHHCHHTGGGH-TTTTEEEEETTEEEGGGTTTSBEETTEEEEEEESTSTS
T ss_pred CEEChhHHHHhC--CeEEecCCCCcHHHHHHHHHhhccccc-cCccEEEEECCEEcCCccCCcCcCCCCEEEEECCCCCC
Confidence 789999999999 678888999999999999999999887 5678999999999998 9999999999999999999
No 7
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=99.84 E-value=4.2e-21 Score=122.61 Aligned_cols=80 Identities=28% Similarity=0.317 Sum_probs=66.0
Q ss_pred EEEEEecHHhHhhcCCCceEEEe-CCCCCHHHHHHHHHHhCCCchhhc---ceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 26 QIKVLFFARARDLTGLTDMPLEV-SCGSTTQDCLNKLIARFPNLEEIR---GCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev-~~~~tv~dLl~~L~~~~p~l~~~~---~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
+|+|+|||.+|+.+|..+++++. ..+.|+.+|.++|..+++.+.... ..+..++|..+++++++|++||+|+||||
T Consensus 1 ~v~V~~fA~lre~~g~~~~~~~~~~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~t~L~dGDeVa~~PP 80 (84)
T COG1977 1 MVKVKYFAALREAAGKDEEELEGLTVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGLDTPLKDGDEVAFFPP 80 (84)
T ss_pred CeEEEEehhHHHHhCCCceeeecccHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccccccCCCCCEEEEeCC
Confidence 48899999999999998888873 335788889888888887544332 23677777888999999999999999999
Q ss_pred CCCC
Q 034057 102 ISGG 105 (105)
Q Consensus 102 vsGG 105 (105)
||||
T Consensus 81 VsGG 84 (84)
T COG1977 81 VSGG 84 (84)
T ss_pred CCCC
Confidence 9999
No 8
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=99.79 E-value=5.8e-19 Score=115.01 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=67.4
Q ss_pred EEEEecHHhHhhcCCCce-EEEeC--CCCCHHHHHHHHHHhCCCchh--------hcceeEEEECCeecC----CCCccC
Q 034057 27 IKVLFFARARDLTGLTDM-PLEVS--CGSTTQDCLNKLIARFPNLEE--------IRGCMVLALNEEYTN----ASVIVN 91 (105)
Q Consensus 27 V~V~~fg~lre~~g~~~~-~vev~--~~~tv~dLl~~L~~~~p~l~~--------~~~~~~vaVNg~~v~----~d~~L~ 91 (105)
|+|+|+|.|+..+|..+. .++++ .+.||++|++.|..+||.+++ +++.++|+||++.+. .+++|+
T Consensus 1 i~v~f~ggl~~~~~~~~~~~~~~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~ 80 (94)
T cd01764 1 IKVEFLGGLELLFGNQKEHHVVLDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILE 80 (94)
T ss_pred CEEEEechHHHHhCCceEEEEeccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCC
Confidence 589999999999997554 23344 568999999999999986543 467999999999974 689999
Q ss_pred CCCEEEEEcCCCCC
Q 034057 92 EKDELAIIPPISGG 105 (105)
Q Consensus 92 dGDeVaiiPPvsGG 105 (105)
+||+|+||||++||
T Consensus 81 dgD~v~i~P~v~GG 94 (94)
T cd01764 81 DGDHVVFISTLHGG 94 (94)
T ss_pred CcCEEEEECCCCCC
Confidence 99999999999998
No 9
>KOG3474 consensus Molybdopterin converting factor, small subunit [Energy production and conversion]
Probab=99.75 E-value=9.9e-19 Score=108.56 Aligned_cols=82 Identities=52% Similarity=0.902 Sum_probs=77.2
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC--CCCccCCCCEEEEEcC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN--ASVIVNEKDELAIIPP 101 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~--~d~~L~dGDeVaiiPP 101 (105)
++.|+|+|||..++.+|+.++.+++|++++..+.++.|.++||.|.++.+.+.+|+|.+++. ....|..-|||+++||
T Consensus 1 ~ieIKVL~Fa~A~eLtG~~d~ai~~Pe~s~~ee~~deil~kfPaLeei~k~mmLAldeEYanp~D~~~l~~~dEiAiIPP 80 (84)
T KOG3474|consen 1 MIEIKVLFFAEACELTGKPDEAIDFPEESDTEECLDEILEKFPALEEIEKCMMLALDEEYANPGDRAELQHFDEIAIIPP 80 (84)
T ss_pred CceEEEeeehhhHHhcCCchhhccCCCCCCHHHHHHHHHHhCccHHHHHHHhheehhhhhcCCCCceeeEeeceeeEcCC
Confidence 36799999999999999999999999999999999999999999999999999999999995 4568999999999999
Q ss_pred CCCC
Q 034057 102 ISGG 105 (105)
Q Consensus 102 vsGG 105 (105)
+|||
T Consensus 81 iSGG 84 (84)
T KOG3474|consen 81 ISGG 84 (84)
T ss_pred CCCC
Confidence 9998
No 10
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=99.62 E-value=2.1e-15 Score=93.11 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=58.2
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
+|+|+++|.. ....+++++++|+.+|++.|.... +.+++++||+++..++.|++||+|+|||||+||
T Consensus 4 mm~v~vng~~------~~~~~~~~~~~tv~~ll~~l~~~~-------~~v~v~vNg~iv~~~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 4 MIRVKVIGRG------IEKEIEWRKGMKVADILRAVGFNT-------ESAIAKVNGKVALEDDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEEeccc------cceEEEcCCCCcHHHHHHHcCCCC-------ccEEEEECCEECCCCcCcCCCCEEEEEccccCC
Confidence 3889999986 346788888999999999995321 458999999999999999999999999999999
No 11
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=99.49 E-value=6.2e-14 Score=85.10 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=49.0
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC----CccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS----VIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d----~~L~dGDeVaiiPPvsGG 105 (105)
.+.+++++++|+.+|++.|.... +.++|++||++++.+ +.|++||+|+|+|||+||
T Consensus 6 g~~~~~~~~~tv~~ll~~l~~~~-------~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 6 GEPREVEEGATLAELLEELGLDP-------RGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CeEEEcCCCCCHHHHHHHcCCCC-------CcEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 35788888999999999997432 468999999999876 899999999999999999
No 12
>PRK06437 hypothetical protein; Provisional
Probab=99.42 E-value=5.8e-13 Score=81.72 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=52.0
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
|..+..+++++++|+.+|++.|.-. .+.+.+++||++++.++.|++||+|.|+||++||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~-------~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLD-------EEEYVVIVNGSPVLEDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCC-------CccEEEEECCEECCCceEcCCCCEEEEEecccCC
Confidence 5567889999999999999998642 1457899999999999999999999999999998
No 13
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=99.39 E-value=1.1e-12 Score=79.24 Aligned_cols=55 Identities=25% Similarity=0.458 Sum_probs=47.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaiiPPvsGG 105 (105)
.+.+++++++|+.+|++.|... +.+++++||++++. ++.|++||+|+|+|||+||
T Consensus 7 g~~~~~~~~~tl~~ll~~l~~~--------~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 7 QQTLSLPDGATVADALAAYGAR--------PPFAVAVNGDFVARTQHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CEEEECCCCCcHHHHHHhhCCC--------CCeEEEECCEEcCchhcccccCCCCCEEEEEeeccCC
Confidence 4678888899999999988642 23689999999974 6889999999999999999
No 14
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=99.36 E-value=1.8e-12 Score=78.45 Aligned_cols=56 Identities=30% Similarity=0.414 Sum_probs=47.6
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC---C-CCccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN---A-SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~---~-d~~L~dGDeVaiiPPvsGG 105 (105)
...+++++++|+.+|++.|... | +.++|++|+++++ + ++.|++||+|+|+|||+||
T Consensus 5 g~~~~~~~~~tv~~ll~~l~~~-~------~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 5 GEPVEVEDGLTLAALLESLGLD-P------RRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CeEEEcCCCCcHHHHHHHcCCC-C------CeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 3577888899999999988643 1 5689999999997 3 4689999999999999999
No 15
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=99.35 E-value=2.6e-12 Score=78.34 Aligned_cols=56 Identities=27% Similarity=0.442 Sum_probs=48.2
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC---C-CCccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN---A-SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~---~-d~~L~dGDeVaiiPPvsGG 105 (105)
...+++++++|+.+|++.|...+ +.++|++|+++++ | ++.|++||+|.|+|||+||
T Consensus 7 g~~~~~~~~~tl~~ll~~l~~~~-------~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 7 DQPMQCAAGQTVHELLEQLNQLQ-------PGAALAINQQIIPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CeEEEcCCCCCHHHHHHHcCCCC-------CcEEEEECCEEeChHHcCccccCCCCEEEEEEEccCC
Confidence 35788888999999999886554 3589999999998 4 4689999999999999999
No 16
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=99.34 E-value=2.6e-12 Score=77.95 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=44.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaiiPPvsGG 105 (105)
+.++++ ..|+.+|++.|... .+.+++++|+++++. ++.|++||+|+|||||+||
T Consensus 8 ~~~~~~-~~tl~~Ll~~l~~~-------~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 8 ETLQTE-ATTLALLLAELDYE-------GNWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred eEEEcC-cCcHHHHHHHcCCC-------CCeEEEEECCEEcCHHHcCccccCCCCEEEEEEeccCC
Confidence 456664 57999999988422 145789999999985 7899999999999999999
No 17
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=99.34 E-value=4.9e-12 Score=80.44 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=62.7
Q ss_pred eEEEEEecHHhHhhcCC----CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 25 IQIKVLFFARARDLTGL----TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~----~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
.+|+++|||.|++++.. ....+.++.+.|++++++.|+-.+++.. .|.|||+.+++++.+++||.|+++|
T Consensus 2 ~~i~~rf~~~L~~flp~~~r~~~~~~~~~~~~tvkd~IEsLGVP~tEV~------~i~vNG~~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 2 PTITFRFYAELNDFLPPERRGGPFTHPFDGGATVKDVIESLGVPHTEVG------LILVNGRPVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred CEEEEEEchHHhhhcChhhcCCceEEecCCCCcHHHHHHHcCCChHHeE------EEEECCEECCCcccCCCCCEEEEEe
Confidence 46899999999999974 2456678888999999999998887553 7899999999999999999999999
Q ss_pred CC
Q 034057 101 PI 102 (105)
Q Consensus 101 Pv 102 (105)
..
T Consensus 76 ~~ 77 (81)
T PF14451_consen 76 VF 77 (81)
T ss_pred cc
Confidence 65
No 18
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=4.9e-11 Score=73.58 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=49.7
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC----CCCccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN----ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~----~d~~L~dGDeVaiiPPvsGG 105 (105)
...++++++.|+.||++.|.-.- +.+++++||++++ .|+.|++||+|.|+.+|+||
T Consensus 9 g~~~e~~~~~tv~dLL~~l~~~~-------~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 9 GKEVEIAEGTTVADLLAQLGLNP-------EGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred CEEEEcCCCCcHHHHHHHhCCCC-------ceEEEEECCEEccchhhhhccccCCCEEEEEEeecCC
Confidence 46788888899999999997542 4689999999999 68999999999999999998
No 19
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=99.21 E-value=4e-11 Score=72.60 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=47.3
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC----CCCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN----ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~----~d~~L~dGDeVaiiPPvsGG 105 (105)
..++++++.|+.+|+..|... ...+.+++|+++++ .++.|++||+|.|+++|+||
T Consensus 8 ~~~~~~~~~tl~~lL~~l~~~-------~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 8 EPRELPDGESVAALLAREGLA-------GRRVAVEVNGEIVPRSQHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred eEEEcCCCCCHHHHHHhcCCC-------CCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEEecCC
Confidence 467888899999999987532 24678999999998 68999999999999999998
No 20
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=99.17 E-value=5.2e-11 Score=72.44 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=47.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC---CCCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN---ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~---~d~~L~dGDeVaiiPPvsGG 105 (105)
..+++++++|+.+|++.|... .+.+++++|+.+++ |++.|++||+|.||+||+||
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~-------~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 8 EQVEVDEQTTVAALLDSLGFP-------EKGIAVAVDWSVLPRSDWATKLRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEEcCCCCcHHHHHHHcCCC-------CCcEEEEECCcCcChhHhhhhcCCCCEEEEEeeccCC
Confidence 567788889999999988532 24689999999986 56789999999999999998
No 21
>PRK01777 hypothetical protein; Validated
Probab=99.13 E-value=2e-10 Score=75.02 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=58.4
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHH--hCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIA--RFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~--~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
.|+|.|-|...=+ .....+++++|+|+.|++..++. .||++. .....+.|||+.+.+|++|++||+|.||||
T Consensus 3 ~i~v~V~ya~~~~----~~~~~l~vp~GtTv~dal~~sgi~~~~pei~--~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrP 76 (95)
T PRK01777 3 KIRVEVVYALPER----QYLQRLTLQEGATVEEAIRASGLLELRTDID--LAKNKVGIYSRPAKLTDVLRDGDRVEIYRP 76 (95)
T ss_pred eeEEEEEEECCCc----eEEEEEEcCCCCcHHHHHHHcCCCccCcccc--cccceEEEeCeECCCCCcCCCCCEEEEecC
Confidence 5889998874422 22378899999999999998764 445552 233578999999999999999999999999
Q ss_pred CC
Q 034057 102 IS 103 (105)
Q Consensus 102 vs 103 (105)
..
T Consensus 77 L~ 78 (95)
T PRK01777 77 LL 78 (95)
T ss_pred CC
Confidence 74
No 22
>PRK07440 hypothetical protein; Provisional
Probab=99.08 E-value=3.3e-10 Score=70.02 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=47.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC----CCCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN----ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~----~d~~L~dGDeVaiiPPvsGG 105 (105)
..+++++++|+.+|++.|... .+.+++++|+++++ .++.|++||+|.|+++++||
T Consensus 12 ~~~~~~~~~tl~~lL~~l~~~-------~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 12 ETRTCSSGTSLPDLLQQLGFN-------PRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred EEEEcCCCCCHHHHHHHcCCC-------CCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 467888899999999987532 25789999999998 57899999999999999998
No 23
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=99.07 E-value=8.1e-10 Score=70.68 Aligned_cols=56 Identities=23% Similarity=0.447 Sum_probs=47.2
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaiiPPvsGG 105 (105)
.+..+++++.|+.+|++.|. ++ ...++|++|+++++. ++.|++||.|.|+.+|+||
T Consensus 25 G~~~~~~~~~tl~~LL~~l~--~~-----~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 25 DQSIQVDISSSLAQIIAQLS--LP-----ELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CeEEEcCCCCcHHHHHHHcC--CC-----CceEEEEECCEEeCHHHcCcccCCCCCEEEEEEEecCC
Confidence 35777888999999999874 32 246899999999983 5789999999999999999
No 24
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=99.05 E-value=5.5e-10 Score=73.10 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=60.6
Q ss_pred EEEEEecHHhHhhcCC-CceEEEeC---CCCCHHHHHHHHHHhCCCch--------hhcceeEEEECCeecC----CCCc
Q 034057 26 QIKVLFFARARDLTGL-TDMPLEVS---CGSTTQDCLNKLIARFPNLE--------EIRGCMVLALNEEYTN----ASVI 89 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~-~~~~vev~---~~~tv~dLl~~L~~~~p~l~--------~~~~~~~vaVNg~~v~----~d~~ 89 (105)
+|+|.|-|.+--.++. +...+++| ...|+++|+.+|.+.+-.-+ .+++.+.|+||+.... .|++
T Consensus 1 ~i~vEF~GGlE~Lf~~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~ 80 (96)
T PF09138_consen 1 KITVEFSGGLELLFGNQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLINDADWELLGEEDYV 80 (96)
T ss_dssp EEEEEEETTCGGGTTT-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB
T ss_pred CEEEEEcCcHHHHhCCceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEEcCccceeecCcceE
Confidence 5899999999999984 45678888 56899999999998763212 2589999999999863 5899
Q ss_pred cCCCCEEEEEcCCCCC
Q 034057 90 VNEKDELAIIPPISGG 105 (105)
Q Consensus 90 L~dGDeVaiiPPvsGG 105 (105)
|++||.|.|++...||
T Consensus 81 l~~~D~I~FiSTLHGG 96 (96)
T PF09138_consen 81 LKDGDNITFISTLHGG 96 (96)
T ss_dssp --TTEEEEEEETTT--
T ss_pred cCCCCEEEEEccCCCC
Confidence 9999999999999998
No 25
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=98.98 E-value=9.6e-10 Score=67.33 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=46.1
Q ss_pred eEEEeCCC-CCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCG-STTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~-~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaiiPPvsGG 105 (105)
..++++++ +|+.+|++.|.-. .+.++|++|+++++. ++.|++||+|.|+++++||
T Consensus 8 ~~~~~~~~~~tv~~lL~~l~~~-------~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 8 NQIEVPESVKTVAELLTHLELD-------NKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred EEEEcCCCcccHHHHHHHcCCC-------CCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 46677777 6899999987543 146899999999985 3889999999999999998
No 26
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.9e-08 Score=61.75 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=64.5
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeC--CCCCHHHHHHHHHH-hC-CCc-------hhhcceeEEEECCeecC----CCCc
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVS--CGSTTQDCLNKLIA-RF-PNL-------EEIRGCMVLALNEEYTN----ASVI 89 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~--~~~tv~dLl~~L~~-~~-p~l-------~~~~~~~~vaVNg~~v~----~d~~ 89 (105)
|.+||.|.|.+--.++.+..++.+. +++++..+++.+.. .| |.- ..+++.+.+.||+.... .+++
T Consensus 1 ~~~KvellGgld~~fnqR~~el~~~~~e~~~vg~liD~~~~~i~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ 80 (96)
T COG5131 1 HEMKVELLGGLDVEFNQREIELTREEVEGSSVGTLIDALRYFIYAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYP 80 (96)
T ss_pred CCceEEEeccchhhhcceeeEEEEcccCCcchhhHHHHHHHHHhCCccceeeecCCCCcccEEEEEcCccHhhhhccccc
Confidence 4689999999999999886666654 46899999988876 11 311 12578999999998865 3689
Q ss_pred cCCCCEEEEEcCCCCC
Q 034057 90 VNEKDELAIIPPISGG 105 (105)
Q Consensus 90 L~dGDeVaiiPPvsGG 105 (105)
|++||.|.|+|-..||
T Consensus 81 ledgDiIvfistlHGg 96 (96)
T COG5131 81 LEDGDIIVFISTLHGG 96 (96)
T ss_pred CCCCCEEEEEecccCC
Confidence 9999999999999998
No 27
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.2e-07 Score=61.56 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=65.5
Q ss_pred CceEEEEEecHHhHhhcCCCceE-EEeC---CCCCHHHHHHHHHHhCC----Cc----hhhcceeEEEECCeecC----C
Q 034057 23 SSIQIKVLFFARARDLTGLTDMP-LEVS---CGSTTQDCLNKLIARFP----NL----EEIRGCMVLALNEEYTN----A 86 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~-vev~---~~~tv~dLl~~L~~~~p----~l----~~~~~~~~vaVNg~~v~----~ 86 (105)
..|.|+|+|.|.+--.+++.... +.++ +..|+++|+.++..+|- .+ ..+++.+.+.||..... .
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~lFi~~gsvrpGii~lINd~DWElleke 82 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDSLFIHHGSVRPGIIVLINDMDWELLEKE 82 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcceEeeCCcCcCcEEEEEeccchhhhccc
Confidence 45889999999999888865432 2333 24799999999998772 22 12578999999998764 5
Q ss_pred CCccCCCCEEEEEcCCCCC
Q 034057 87 SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 87 d~~L~dGDeVaiiPPvsGG 105 (105)
|++|++||.|.|+.-..||
T Consensus 83 dy~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 83 DYPLEDGDHIVFISTLHGG 101 (101)
T ss_pred ccCcccCCEEEEEEeccCC
Confidence 8999999999999999998
No 28
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.59 E-value=9.9e-08 Score=74.12 Aligned_cols=55 Identities=29% Similarity=0.338 Sum_probs=47.4
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC----CCCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN----ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~----~d~~L~dGDeVaiiPPvsGG 105 (105)
+.+++++++|+.||++.|... .+.+.|++|+++++ .++.|++||+|.||++|+||
T Consensus 8 k~~el~e~~TL~dLL~~L~i~-------~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 8 EPRQVPAGLTIAALLAELGLA-------PKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred EEEecCCCCcHHHHHHHcCCC-------CCeEEEEECCEECCHHHcCccccCCCCEEEEEEEecCC
Confidence 467888899999999988532 24689999999998 46899999999999999998
No 29
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=98.29 E-value=2e-06 Score=55.11 Aligned_cols=73 Identities=16% Similarity=0.376 Sum_probs=45.4
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHH--HHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNK--LIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPI 102 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~--L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPv 102 (105)
|+|.|-|-.. . ......+++++|+|+.+.++. |.+.||++. +....+-|=|+.+.+|+.|++||.|.|+-|.
T Consensus 1 i~VeV~yA~p-~---~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~id--l~~~~vGIfGk~~~~d~~L~~GDRVEIYRPL 74 (84)
T PF03658_consen 1 IRVEVAYALP-E---RQVILTLEVPEGTTVAQAIEASGILEQFPEID--LEKNKVGIFGKLVKLDTVLRDGDRVEIYRPL 74 (84)
T ss_dssp EEEEEEEEET-T---CEEEEEEEEETT-BHHHHHHHHTHHHH-TT----TTTSEEEEEE-S--TT-B--TT-EEEEE-S-
T ss_pred CEEEEEEECC-C---eEEEEEEECCCcCcHHHHHHHcCchhhCcccC--cccceeeeeeeEcCCCCcCCCCCEEEEeccC
Confidence 6788877533 1 233467889999999999875 667889863 2345788889999999999999999999886
Q ss_pred C
Q 034057 103 S 103 (105)
Q Consensus 103 s 103 (105)
.
T Consensus 75 ~ 75 (84)
T PF03658_consen 75 T 75 (84)
T ss_dssp -
T ss_pred c
Confidence 3
No 30
>PF06805 Lambda_tail_I: Bacteriophage lambda tail assembly protein I; InterPro: IPR010654 This family consists of several Bacteriophage lambda tail assembly protein I and related phage and bacterial sequences. Members of this family are typically around 200 residues in length. The function of this family is unknown.
Probab=98.22 E-value=4.9e-06 Score=52.88 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred EEEEEecHHhH-hhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC---C-CCccCCCCEEEEEc
Q 034057 26 QIKVLFFARAR-DLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN---A-SVIVNEKDELAIIP 100 (105)
Q Consensus 26 ~V~V~~fg~lr-e~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~---~-d~~L~dGDeVaiiP 100 (105)
..+|+++|.|. ..+|. ...+. ..|+.|.+..|..+.|+++........-.||+... | +..+++|++|.|.|
T Consensus 2 ~~tI~L~G~L~~~~fGr-~~~l~---v~t~~Eai~AL~~~~pGf~~~~~v~~~~~ng~~~l~~~~~~~~~~~g~~I~IvP 77 (82)
T PF06805_consen 2 MRTIRLYGPLGPRRFGR-RHRLA---VDTPAEAIRALCVQLPGFEQFFAVFIGKRNGEDELEARWHDERPKGGSVIRIVP 77 (82)
T ss_pred cEEEEEeCcCcCccceE-EEEec---cCCHHHHHHHHHhcChhhhhhcceEEeeeCChhhhhhhhhcccCCCCCEEEEEE
Confidence 46899999998 78884 34433 46999999999999999987634445555655543 2 25799999999999
Q ss_pred CCCCC
Q 034057 101 PISGG 105 (105)
Q Consensus 101 PvsGG 105 (105)
-+.|+
T Consensus 78 vi~Gs 82 (82)
T PF06805_consen 78 VIAGS 82 (82)
T ss_pred ecCCC
Confidence 99996
No 31
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=97.79 E-value=0.00014 Score=42.11 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=40.8
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
..++++.++|+.++++.+.. .+. ...+.+.+||+.++.+++|.+||+|.++
T Consensus 9 ~~~~~~~~~t~~~~~~~~~~---~~~--~~~va~~vng~~vdl~~~l~~~~~ve~v 59 (60)
T cd01668 9 EIIELPAGATVLDFAYAIHT---EIG--NRCVGAKVNGKLVPLSTVLKDGDIVEII 59 (60)
T ss_pred CEEEcCCCCCHHHHHHHHCh---Hhh--hheEEEEECCEECCCCCCCCCCCEEEEE
Confidence 46778999999998876642 222 1457888999999999999999999886
No 32
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.74 E-value=0.00023 Score=40.11 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=41.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
..++++.++|+.+++..+...++ ...+++.+||+.++.+++|.+||+|.|+
T Consensus 9 ~~~~~~~g~t~~~~~~~~~~~~~-----~~~~~~~vn~~~~~l~~~l~~~~~i~~i 59 (60)
T cd01616 9 SAVELPKGATAMDFALKIHTDLG-----KGFIGALVNGQLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred CEEEcCCCCCHHHHHHHHHHHHH-----hheEEEEECCEECCCCcCcCCCCEEEEe
Confidence 46777889999999988865432 1346788999999999999999999987
No 33
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=97.54 E-value=0.00013 Score=43.56 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=41.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
....+++.++|+.|+...+... +.+ ..+...|||+.++.+++|++||.|.|+
T Consensus 8 G~~~~~~~g~T~~d~A~~I~~~---l~~--~~~~A~Vng~~vdl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 8 GSIKELPEGSTVLDVAYSIHSS---LAK--RAVAAKVNGQLVDLDHPLEDGDVVEII 59 (60)
T ss_dssp SCEEEEETTBBHHHHHHHHSHH---HHH--CEEEEEETTEEEETTSBB-SSEEEEEE
T ss_pred CCeeeCCCCCCHHHHHHHHCHH---HHh--heeEEEEcCEECCCCCCcCCCCEEEEE
Confidence 4567789999999999887643 332 456788999999999999999999997
No 34
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=97.47 E-value=0.0014 Score=39.59 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=53.9
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.+. | +...++++...|+.+|.+.+..+. ++.. ...++..+|+.... ++-+.+|+.|.++
T Consensus 1 m~i~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~-g~~~--~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~ 70 (76)
T cd01806 1 MLIKVKTLT------G-KEIEIDIEPTDKVERIKERVEEKE-GIPP--QQQRLIYSGKQMNDDKTAADYKLEGGSVLHLV 70 (76)
T ss_pred CEEEEEeCC------C-CEEEEEECCCCCHHHHHHHHhHhh-CCCh--hhEEEEECCeEccCCCCHHHcCCCCCCEEEEE
Confidence 667777753 4 467888988899999999998875 2211 23456688988754 4679999999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
+...||
T Consensus 71 ~~~~gg 76 (76)
T cd01806 71 LALRGG 76 (76)
T ss_pred EEccCC
Confidence 998887
No 35
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.42 E-value=0.0018 Score=35.40 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=46.5
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcC
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPP 101 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPP 101 (105)
+.....+.++...|++++++.+..+++.. .+.+.+++|+..... +..+.+|++|.+.|+
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 69 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLP---PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVPR 69 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcC---hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 34567788887899999999999998521 245788999998763 358999999999874
No 36
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.40 E-value=0.00059 Score=42.66 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=38.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEE-----EECCeecCCCCccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVL-----ALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~v-----aVNg~~v~~d~~L~dGDeVaii 99 (105)
...+.++.|+|+.|+...+.... .+-.....+ -++|+.++.+++|++||.|.|+
T Consensus 16 ~~~liL~~GaTV~D~a~~iH~di---~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~ 74 (75)
T cd01666 16 DEPVILRRGSTVEDVCNKIHKDL---VKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIV 74 (75)
T ss_pred CCCEEECCCCCHHHHHHHHHHHH---HHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEe
Confidence 46788899999999988776321 110011111 2499999999999999999986
No 37
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=97.39 E-value=0.00069 Score=40.41 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=40.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
+..+++.+++|+.+|.+.+.... =.+.+||=.+..|..|++||+|.|++
T Consensus 7 ~k~~~~~~~~tl~~lr~~~k~~~---------DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 7 EKEIETEENTTLFELRKESKPDA---------DIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CEEEEcCCCcCHHHHHHhhCCCC---------CEEEEcCcccCCccccCCCCEEEEEe
Confidence 46778888899999998775321 15679999999999999999999986
No 38
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=97.28 E-value=0.0034 Score=37.88 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=53.3
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.+. | +...++++...|+++|.+.+..... +.. ....+..+|+.... ++-+++|+.|.+.
T Consensus 1 m~i~v~~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~g-~~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (76)
T cd01803 1 MQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (76)
T ss_pred CEEEEEcCC------C-CEEEEEECCcCcHHHHHHHHHHHhC-CCH--HHeEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 667777664 4 4577899888999999999988752 111 23455678888764 4678999999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
....||
T Consensus 71 ~~~~gg 76 (76)
T cd01803 71 LRLRGG 76 (76)
T ss_pred EEccCC
Confidence 999998
No 39
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=97.16 E-value=0.004 Score=38.64 Aligned_cols=72 Identities=15% Similarity=0.322 Sum_probs=52.9
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAII 99 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaii 99 (105)
.|+|+|+-.. | +...++++...|+++|.+.+.++. ++.. ...++...|+.... ++-+++|+.|.++
T Consensus 1 ~m~I~Vk~~~------G-~~~~l~v~~~~TV~~LK~~I~~~~-~~~~--~~qrL~~~Gk~L~d~~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 1 PMNLNIHSTT------G-TRFDLSVPPDETVEGLKKRISQRL-KVPK--ERLALLHRETRLSSGKLQDLGLGDGSKLTLV 70 (78)
T ss_pred CeEEEEEECC------C-CEEEEEECCcCHHHHHHHHHHHHh-CCCh--HHEEEEECCcCCCCCcHHHcCCCCCCEEEEE
Confidence 3778887663 4 357899988899999999998875 2221 22345566776654 3568999999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
+++-||
T Consensus 71 ~~~~~~ 76 (78)
T cd01804 71 PTVEAG 76 (78)
T ss_pred eecccc
Confidence 999887
No 40
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0031 Score=41.30 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=51.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHH--HHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNK--LIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPI 102 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~--L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPv 102 (105)
+.|.|.|--+=+.+ -..+.+++|+|+.+.+.. |.+.+|++. ...+.+=|=++.+.++..|++||.|.|+-|.
T Consensus 4 I~VevvyAlPerq~----l~~v~v~egatV~dAi~~Sgll~~~~~id--l~~n~~GI~~k~~kl~~~l~dgDRVEIyRPL 77 (99)
T COG2914 4 IAVEVVYALPERQY----LCRVQLQEGATVEDAILASGLLELFPDID--LHENKVGIYSKPVKLDDELHDGDRVEIYRPL 77 (99)
T ss_pred eEEEEEEEcCCcce----EEEEEeccCcCHHHHHHhcchhhccccCC--ccccceeEEccccCccccccCCCEEEEeccc
Confidence 55666554332221 246788899999988764 666777664 2345666777888899999999999999885
No 41
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=96.69 E-value=0.023 Score=37.27 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=54.1
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai 98 (105)
+|+|.|+-.+ | ....++++...||.+|.+.+.+.+. +.. ....+.-+|+.... ++-|.+|+.|.+
T Consensus 27 ~M~I~Vk~l~------G-~~~~leV~~~~TV~~lK~kI~~~~g-ip~--~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l 96 (103)
T cd01802 27 TMELFIETLT------G-TCFELRVSPFETVISVKAKIQRLEG-IPV--AQQHLIWNNMELEDEYCLNDYNISEGCTLKL 96 (103)
T ss_pred CEEEEEEcCC------C-CEEEEEeCCCCcHHHHHHHHHHHhC-CCh--HHEEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence 5777776553 3 4688999888999999999988753 211 22355678888764 467888999999
Q ss_pred EcCCCCC
Q 034057 99 IPPISGG 105 (105)
Q Consensus 99 iPPvsGG 105 (105)
..+.-||
T Consensus 97 ~~~l~GG 103 (103)
T cd01802 97 VLAMRGG 103 (103)
T ss_pred EEecCCC
Confidence 9999887
No 42
>PTZ00044 ubiquitin; Provisional
Probab=96.68 E-value=0.03 Score=33.91 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=52.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+-+ -| ....+++....|+.+|...+.+... +.. ....+..+|+.... ++-+.+|+.|.++
T Consensus 1 m~i~vk~~------~G-~~~~l~v~~~~tv~~lK~~i~~~~g-i~~--~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 1 MQILIKTL------TG-KKQSFNFEPDNTVQQVKMALQEKEG-IDV--KQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred CEEEEEeC------CC-CEEEEEECCCCcHHHHHHHHHHHHC-CCH--HHeEEEECCEEccCCCcHHHcCCCCCCEEEEE
Confidence 55666655 34 4778899888999999999988763 211 22345578888753 4678999999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
.+..||
T Consensus 71 ~~~~gg 76 (76)
T PTZ00044 71 LQLRGG 76 (76)
T ss_pred EEccCC
Confidence 988887
No 43
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=96.63 E-value=0.035 Score=33.75 Aligned_cols=69 Identities=22% Similarity=0.136 Sum_probs=51.1
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+. + ....++++...||+++...+.+... +. .....+.-+|+.... ++-+++++.|.+.
T Consensus 1 mqi~vk~--------~-~~~~l~v~~~~tV~~lK~~i~~~~g-ip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 1 MQLFVRA--------Q-NTHTLEVTGQETVSDIKAHVAGLEG-ID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEEC--------C-CEEEEEECCcCcHHHHHHHHHhhhC-CC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 5677764 2 3578899888999999999987752 11 123456678888764 4678999999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
.+.-||
T Consensus 69 ~~l~GG 74 (74)
T cd01793 69 GRLLGG 74 (74)
T ss_pred EecCCC
Confidence 998887
No 44
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=96.60 E-value=0.019 Score=32.25 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=40.2
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 45 PLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 45 ~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
.++++.++|+.+++..+...++ ...+...+||+..++.+++.++++|.++.
T Consensus 10 ~~~~~~~~t~~~~~~~~~~~~~-----~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 10 VKEFPKGTTPLDIAKSISPGLA-----KKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEEeCCCCCHHHHHHHHHHHHH-----hheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 4567788999998887765432 13467779999999999999999999874
No 45
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=96.56 E-value=0.03 Score=33.97 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=47.9
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCC-chhhcceeEEEECCeecCC-----CCccCCCCEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPN-LEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~-l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai 98 (105)
|+|.|+.++ | ....++++...|+.+|.+.+.+...- +. .....+..+|+.... +.-+++|+.|.+
T Consensus 1 m~i~vk~~~------g-~~~~l~v~~~~TV~~lK~~i~~~~~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~ 71 (77)
T cd01805 1 MKITFKTLK------Q-QTFPIEVDPDDTVAELKEKIEEEKGCDYP--PEQQKLIYSGKILKDDTTLEEYKIDEKDFVVV 71 (77)
T ss_pred CEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHhhCCCCC--hhHeEEEECCEEccCCCCHHHcCCCCCCEEEE
Confidence 677777753 3 46788998889999999999887631 01 133567789998864 457889998876
Q ss_pred E
Q 034057 99 I 99 (105)
Q Consensus 99 i 99 (105)
+
T Consensus 72 ~ 72 (77)
T cd01805 72 M 72 (77)
T ss_pred E
Confidence 5
No 46
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.078 Score=34.89 Aligned_cols=74 Identities=12% Similarity=0.215 Sum_probs=57.3
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-----CCCccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-----ASVIVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-----~d~~L~dGDeVai 98 (105)
+..|+++.-|. +.....+.+...+++.-|+..-+++-. +. ...+++..||+.+. .+....+||+|.+
T Consensus 18 ~~hi~LKV~gq-----d~~~~~Fkikr~t~LkKLM~aYc~r~G-l~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev 89 (99)
T KOG1769|consen 18 SEHINLKVKGQ-----DGSVVVFKIKRHTPLKKLMKAYCERQG-LS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEV 89 (99)
T ss_pred cceEEEEEecC-----CCCEEEEEeecCChHHHHHHHHHHHcC-Cc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEE
Confidence 57777777773 334557788888899999998887642 32 35789999999985 3567999999999
Q ss_pred EcCCCCC
Q 034057 99 IPPISGG 105 (105)
Q Consensus 99 iPPvsGG 105 (105)
+.+-.||
T Consensus 90 ~~~q~gG 96 (99)
T KOG1769|consen 90 VQEQTGG 96 (99)
T ss_pred EeecccC
Confidence 9998887
No 47
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.22 E-value=0.032 Score=34.79 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=38.5
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
+.+.++.++|+.|+-..+-..... .+ .....+.|++.+++++.|++||.|.|+
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~--~f-~~Ai~~k~~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGD--GF-LHAIDARTGRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHh--cc-eeeEEeeCCEEeCCCcEecCCCEEEEe
Confidence 577889999999988766543211 01 112334599999999999999999997
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=96.03 E-value=0.062 Score=31.91 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=45.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|+|++.| ....++++...|+.+|.+.+..... +.. ....+..+|+.... +.-+++|++|.++
T Consensus 1 i~i~vk~~g--------~~~~i~v~~~~tv~~lK~~i~~~~g-i~~--~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHGG--------ESHDLSISSQATFGDLKKMLAPVTG-VEP--RDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEECC--------EEEEEEECCCCcHHHHHHHHHHhhC-CCh--HHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 456676643 3467888888999999999987752 211 23456678877754 3557999999887
Q ss_pred c
Q 034057 100 P 100 (105)
Q Consensus 100 P 100 (105)
.
T Consensus 70 ~ 70 (71)
T cd01812 70 E 70 (71)
T ss_pred c
Confidence 3
No 49
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=95.95 E-value=0.12 Score=31.24 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=48.3
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.+ -| ....+++....|+++|.+.+.+... +.. ....+..+|+.... ++-+++|+.|.++
T Consensus 1 m~i~vk~~------~G-~~~~l~v~~~~tV~~lK~~i~~~~g-i~~--~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 1 MFLTVKLL------QG-RECSLQVSEKESVSTLKKLVSEHLN-VPE--EQQRLLFKGKALADDKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred CEEEEEeC------CC-CEEEEEECCCCcHHHHHHHHHHHHC-CCH--HHeEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 67777766 24 4678999888999999999988752 211 23466788998864 4678899999776
Q ss_pred c
Q 034057 100 P 100 (105)
Q Consensus 100 P 100 (105)
.
T Consensus 71 ~ 71 (74)
T cd01807 71 V 71 (74)
T ss_pred E
Confidence 4
No 50
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=95.89 E-value=0.15 Score=32.07 Aligned_cols=63 Identities=11% Similarity=0.278 Sum_probs=50.2
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcCCCCC
Q 034057 39 TGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 39 ~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPPvsGG 105 (105)
.| ....+.+....++..|.+.+.++. ++. ...+.+.-||+.+.. +.-+++||.|.++-..-||
T Consensus 20 ~g-~~~~~~v~~~~~l~~l~~~y~~~~-gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 20 DG-NEVFFKIKRSTPLKKLMEAYCQRQ-GLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CC-CEEEEEEcCCCHHHHHHHHHHHHh-CCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 45 467889988899999999999875 332 256788889999864 4679999999999888777
No 51
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.89 E-value=0.078 Score=32.21 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=46.8
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcCCCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPPvsGG 105 (105)
+...+++....||++|.+.+..... +.. +...+.-+|+.... ++-+++|+.|.+.++..||
T Consensus 9 ~~~~l~v~~~~tV~~lK~~I~~~~g-i~~--~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 9 RSSIYEVQLTQTVATLKQQVSQRER-VQA--DQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhC-CCH--HHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 4678899888999999999987642 211 22355678888764 4679999999999999988
No 52
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=95.78 E-value=0.13 Score=30.38 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=46.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.+. | +...++++...|+.+|.+.+..... .. .....+..+|+.... ++-+++|+.|.++
T Consensus 1 i~i~vk~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLD------S-QTHTFTVEEEITVLDLKEKIAEEVG-IP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-cC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 566666652 3 4678899888999999999988753 21 123455678988764 4578899998876
Q ss_pred c
Q 034057 100 P 100 (105)
Q Consensus 100 P 100 (105)
.
T Consensus 71 ~ 71 (72)
T cd01809 71 K 71 (72)
T ss_pred e
Confidence 3
No 53
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=95.71 E-value=0.093 Score=32.13 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=47.0
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcCCCCC
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPPvsGG 105 (105)
+.....++++...|+.+|...|..... +.. ....+..+|..... ++-+++|+.|.++...-||
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~~g-ip~--~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEETG-MPA--GKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHC-CCH--HHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 335788999988999999999987652 221 23456678887654 4689999999999888776
No 54
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.35 E-value=0.071 Score=45.38 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=40.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
...+.+|.|+|+-|+--.+- +++.. ......|||+.++++++|++||.|.|+.
T Consensus 369 G~~~~lp~gst~~DfAy~ih---~~~g~--~~~~a~vng~~v~l~~~l~~gd~vei~t 421 (683)
T TIGR00691 369 GDVVELPSGSTPVDFAYAVH---TDVGN--KCTGAKVNGKIVPLDKELENGDVVEIIT 421 (683)
T ss_pred CeEEEcCCCCCHHHHHHHHh---HHhHh--ceeEEEECCEECCCCccCCCCCEEEEEe
Confidence 56788999999998766543 33321 2334559999999999999999999985
No 55
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.95 E-value=0.071 Score=45.60 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=38.9
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
...+++|.|+|+-|.-=.+ |.++. ..++..-|||+.|+++++|+.||.|.|+.
T Consensus 395 G~v~~LP~GaT~lDFAY~i---Ht~iG--~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 395 GRIVELPAGATPVDFAYAV---HTDIG--HACVGARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred CCEEeCCCCCchhhhhHhh---Cchhh--ceeEEEEECCEECCCCccCCCCCEEEEEe
Confidence 4567777777776654322 23332 24678899999999999999999999985
No 56
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.66 E-value=0.13 Score=44.42 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=40.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
...+.+|.|.|+-|+--.+- +++. .......|||+.++++++|++||.|.|+.-
T Consensus 413 G~~~~Lp~gaT~lDfAy~iH---t~iG--~~~~gAkvng~~v~l~~~L~~GD~VeIits 466 (743)
T PRK10872 413 GDVVDLPAGSTPLDFAYHIH---SDVG--HRCIGAKIGGRIVPFTYQLQMGDQIEIITQ 466 (743)
T ss_pred CCeEEcCCCCcHHHHHHHHh---HHHH--hhceEEEECCEECCCCcCCCCCCEEEEEeC
Confidence 45788999999988765443 2222 123455699999999999999999999853
No 57
>COG4723 Phage-related protein, tail component [Function unknown]
Probab=94.64 E-value=0.09 Score=38.29 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=55.2
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhc--ceeEEEECCeecC-------CCCccCCCCEE
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIR--GCMVLALNEEYTN-------ASVIVNEKDEL 96 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~--~~~~vaVNg~~v~-------~d~~L~dGDeV 96 (105)
..+|.+||.| ..+|+ ...+.+. |.+|.++.|+.+-|+|+... ....+.+-+.... .-..+.+|+.|
T Consensus 5 m~~I~L~G~L-~rFGR-~~~l~V~---t~aEAi~AL~~q~pgfr~~m~~~~y~~~i~~~~~~~~~v~~~~~e~~~~g~~I 79 (198)
T COG4723 5 LARICLYGDL-QRFGR-RLSLYVN---TAAEAIRALSLQMPGFRRQMNEGWYQIRIAGVDTAPENVTASLHESLGPGAVI 79 (198)
T ss_pred eeEEEecChH-HHhhh-HHhhhhC---CHHHHHHHHHhcChhHHHHHhcceeeeEeeccccCcccccHhHhccCCCCcEE
Confidence 4789999999 88896 4566553 78999999999999998642 2233444444432 23568899999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
-|.|-++|+
T Consensus 80 ~iVPrlaGa 88 (198)
T COG4723 80 HIVPRLAGA 88 (198)
T ss_pred EecceeccC
Confidence 999999884
No 58
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=94.30 E-value=0.7 Score=28.30 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=40.2
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEEE
Q 034057 39 TGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAII 99 (105)
Q Consensus 39 ~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVaii 99 (105)
.| ....++++...||++|.+.+.+.. ++.. +..++...|+....+ +-|++|+.|-++
T Consensus 10 ~G-k~~~~~v~~~~TV~~LK~~I~~~~-~~~~--~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 10 LG-KKVRVKCNPDDTIGDLKKLIAAQT-GTRP--EKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CC-CEEEEEeCCCCcHHHHHHHHHHHh-CCCh--HHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 35 467889988899999999998875 2322 223445568777643 568899998775
No 59
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.25 E-value=0.59 Score=28.74 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=44.6
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai 98 (105)
.|+++|+-.. | +...++++...||.+|.+.+.+... +..-+..+...-+|+.... |+-+++|+.|.+
T Consensus 2 ~~~i~Vk~~~------G-~~~~~~v~~~~TV~~lK~~I~~~~~-i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l 73 (80)
T cd01792 2 GWDLKVKMLG------G-NEFLVSLRDSMTVSELKQQIAQKIG-VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLL 73 (80)
T ss_pred ceEEEEEeCC------C-CEEEEEcCCCCcHHHHHHHHHHHhC-CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEE
Confidence 3777776644 4 4677888888999999999988762 2211112211236776654 456888998876
Q ss_pred E
Q 034057 99 I 99 (105)
Q Consensus 99 i 99 (105)
+
T Consensus 74 ~ 74 (80)
T cd01792 74 V 74 (80)
T ss_pred E
Confidence 5
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.24 E-value=0.28 Score=39.13 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=48.6
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC--CchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP--NLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p--~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
|+|+||.+. | +...++++...||.+|.+.|..... .+. .....+..+|++... ++.|++||.|.
T Consensus 1 MkItVKtl~------g-~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Iv 71 (378)
T TIGR00601 1 MTLTFKTLQ------Q-QKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVV 71 (378)
T ss_pred CEEEEEeCC------C-CEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence 678887653 3 4678899888999999999987642 121 133567788998865 45689999998
Q ss_pred EE
Q 034057 98 II 99 (105)
Q Consensus 98 ii 99 (105)
++
T Consensus 72 vm 73 (378)
T TIGR00601 72 VM 73 (378)
T ss_pred EE
Confidence 87
No 61
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.87 E-value=0.16 Score=43.55 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
...+++|.|.|.-|.-=.+ |.++. ..++..-|||+.+++++.|+.||.|.|+..
T Consensus 396 G~vi~LP~GatplDFAY~v---Ht~iG--~~c~gAkVnG~ivpl~~~Lk~Gd~VEIit~ 449 (701)
T COG0317 396 GKVIDLPKGATPLDFAYAV---HTDIG--HRCIGAKVNGRIVPLTTKLQTGDQVEIITS 449 (701)
T ss_pred CCEEeCCCCCcchhhhhhh---hchhc--ceeeEEEECCEEeccceecCCCCEEEEEeC
Confidence 4788999998887764333 23222 246788999999999999999999999854
No 62
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=93.66 E-value=0.044 Score=32.05 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=22.9
Q ss_pred hcceeEEEECCeec-CCCCccCCCCEEEE
Q 034057 71 IRGCMVLALNEEYT-NASVIVNEKDELAI 98 (105)
Q Consensus 71 ~~~~~~vaVNg~~v-~~d~~L~dGDeVai 98 (105)
+...=.|.|||..+ .+.+.|+.||+|.|
T Consensus 30 li~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 30 FLQENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHHcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 33445789999998 57999999999986
No 63
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=93.56 E-value=0.48 Score=26.96 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=36.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASV 88 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~ 88 (105)
|+|.|+..+ ....++++...|+++|...+..... +. .....+..||+....+.
T Consensus 1 ~~i~vk~~~--------~~~~~~v~~~~tv~~lk~~i~~~~~-~~--~~~~~L~~~g~~L~d~~ 53 (64)
T smart00213 1 IELTVKTLD--------GTITLEVKPSDTVSELKEKIAELTG-IP--VEQQRLIYKGKVLEDDR 53 (64)
T ss_pred CEEEEEECC--------ceEEEEECCCCcHHHHHHHHHHHHC-CC--HHHEEEEECCEECCCCC
Confidence 567777764 2457888888899999999988763 21 12356778888876543
No 64
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=93.17 E-value=0.49 Score=27.79 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=42.5
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
....++++...|+.+|.+.+....+ +. .+...+..||+.... ++-+.+|+.|.+.
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~-~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETG-IP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHT-ST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEE
T ss_pred cEEEEEECCCCCHHHhhhhcccccc-cc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEE
Confidence 3678889888999999999998764 11 245678889999854 4678899988764
No 65
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=93.02 E-value=0.41 Score=29.71 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=36.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEEC--CeecCCCCccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALN--EEYTNASVIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVN--g~~v~~d~~L~dGDeVaii 99 (105)
...+-++.++|+.|+...+-... . ..+..|+. .+.++.|+.|++||.|.|.
T Consensus 23 ~~~~~l~~g~tv~d~a~~IH~d~---~---~~F~~A~v~~~~~vg~d~~l~d~DVv~i~ 75 (76)
T cd04938 23 RDCVLVKKGTTVGDVARKIHGDL---E---KGFIEAVGGRRRLEGKDVILGKNDILKFK 75 (76)
T ss_pred ceeEEEcCCCCHHHHHHHHhHHH---H---hccEEEEEccCEEECCCEEecCCCEEEEE
Confidence 45777899999999888776432 2 22233333 4688999999999999885
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=92.99 E-value=0.38 Score=28.63 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=41.0
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
....+.+....+++.|++..+++..--. ...+.+..||+.++. +.-+.+||.|.++
T Consensus 11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~--~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 11 KEIKFKVKPTTTVSKLIEKYCEKKGIPP--EESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEEETTSCCHHHHHHHHHHHTTTT---TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCc--cceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 3678888888999999999988752111 145889999999874 3569999999875
No 67
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=92.13 E-value=1.4 Score=25.32 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=40.0
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVaii 99 (105)
....++++...|+++|.+.+....+ +. .....+..||+.+..+ .-+.+|+.|.++
T Consensus 8 ~~~~~~~~~~~ti~~lK~~i~~~~~-~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 8 KTFELEVSPDDTVAELKAKIAAKEG-VP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHC-cC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 4667888888999999999998764 21 1234567788877643 467889888775
No 68
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=91.99 E-value=0.42 Score=26.40 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEEECCeecC-CCCccCCCCEE
Q 034057 76 VLALNEEYTN-ASVIVNEKDEL 96 (105)
Q Consensus 76 ~vaVNg~~v~-~d~~L~dGDeV 96 (105)
.|.|||+.+. +++.+++||.|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 5899999997 89999999987
No 69
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=91.90 E-value=0.53 Score=39.26 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=42.5
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 45 PLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 45 ~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
.+++|.++|+.++...+...++. ..++..|||+.+++++++..+++|.|+.
T Consensus 11 ~~~~~~gtt~~dia~~~~~~~~~-----~~v~a~vng~l~dL~~~l~~d~~Vefi~ 61 (638)
T PRK00413 11 VREFEAGVTVADVAASISPGLAK-----AAVAGKVNGELVDLSTPIEEDASLEIIT 61 (638)
T ss_pred EEEeCCCCCHHHHHHHhhhhchh-----heEEEEECCEEeeCCccccCCCceeeee
Confidence 56678899999999888765432 4578889999999999999999999885
No 70
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=91.04 E-value=0.75 Score=38.61 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=42.3
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 45 PLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 45 ~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
..+++.++|+.++.+.+...++. ..+++.|||+..+++++|..+.+|.|+.
T Consensus 15 ~~~~~~g~t~~~ia~~~~~~~~~-----~iv~a~vn~~l~dL~~~i~~d~~i~fv~ 65 (639)
T PRK12444 15 VKEFVKGITLEEIAGSISSSLKK-----KAVAGKVNDKLYDLRRNLEEDAEVEIIT 65 (639)
T ss_pred EEEecCCCCHHHHHHHhhhhcch-----heEEEEECCEEEEcCcccCCCCeEEEec
Confidence 45577899999999988765432 4578889999999999999999999985
No 71
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=90.95 E-value=1.4 Score=33.26 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=37.7
Q ss_pred eEEEeC---CCCCHHHHHHHHHHhC-----CCchh-------hcceeEEEECCeec-------CCCC---ccCCCCEEEE
Q 034057 44 MPLEVS---CGSTTQDCLNKLIARF-----PNLEE-------IRGCMVLALNEEYT-------NASV---IVNEKDELAI 98 (105)
Q Consensus 44 ~~vev~---~~~tv~dLl~~L~~~~-----p~l~~-------~~~~~~vaVNg~~v-------~~d~---~L~dGDeVai 98 (105)
.+++++ +++||-++|..+.++. +.|+- +=..+.+.|||+.. .-.+ .+.+|++|.|
T Consensus 20 q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~~~LAC~t~~~~~~~~~~i~i 99 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDRGTTTCQLHMRSFKDGDTITI 99 (250)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCcccchhhhhhhhcCCCCeEEE
Confidence 455555 5799999999997653 33431 12578999999983 1122 2456788888
Q ss_pred Ec
Q 034057 99 IP 100 (105)
Q Consensus 99 iP 100 (105)
-|
T Consensus 100 eP 101 (250)
T PRK07570 100 EP 101 (250)
T ss_pred EE
Confidence 76
No 72
>smart00363 S4 S4 RNA-binding domain.
Probab=90.75 E-value=0.37 Score=26.48 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.1
Q ss_pred eEEEECCeec-CCCCccCCCCEEEEEc
Q 034057 75 MVLALNEEYT-NASVIVNEKDELAIIP 100 (105)
Q Consensus 75 ~~vaVNg~~v-~~d~~L~dGDeVaiiP 100 (105)
-.|.|||..+ ..++.|..||.|.+..
T Consensus 26 g~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 26 GRVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CCEEECCEEecCCCeEeCCCCEEEEcc
Confidence 3688999999 7899999999998743
No 73
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=90.20 E-value=2.6 Score=25.07 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=39.1
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEc
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIP 100 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiP 100 (105)
..++++...|+.+|.+.+.++.+ ... ....+.-+|+.... |+-+++|+.|.+..
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~-i~~--~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFK-ANQ--EQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhC-CCH--HHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 47888888999999999988763 321 23344558887754 46788899988764
No 74
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=89.73 E-value=0.88 Score=34.19 Aligned_cols=77 Identities=6% Similarity=0.145 Sum_probs=45.0
Q ss_pred CceEEEEEecHHhHhhcC-CCceEEEeCCCCCHHHHHHHHHHh--------CCCchh-------hcceeEEEECCeecC-
Q 034057 23 SSIQIKVLFFARARDLTG-LTDMPLEVSCGSTTQDCLNKLIAR--------FPNLEE-------IRGCMVLALNEEYTN- 85 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g-~~~~~vev~~~~tv~dLl~~L~~~--------~p~l~~-------~~~~~~vaVNg~~v~- 85 (105)
+.|+++|+=|-. .+..+ ..+.++++.+++||-|+|..+.+. .+.|.- +=..+.+.|||+..-
T Consensus 4 ~~~~~~i~R~~~-~~~~~~~q~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~LA 82 (249)
T PRK08640 4 KTVRLIIKRQDG-PDSKPYWEEFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPRQA 82 (249)
T ss_pred cEEEEEEEeeCC-CCCCceeEEEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccchh
Confidence 346666665544 22222 123445555789999999999864 233421 124789999999853
Q ss_pred CCCccCC-CCEEEEEc
Q 034057 86 ASVIVNE-KDELAIIP 100 (105)
Q Consensus 86 ~d~~L~d-GDeVaiiP 100 (105)
=.+.|.+ +++|.|=|
T Consensus 83 C~t~v~~~~~~i~ieP 98 (249)
T PRK08640 83 CTALIDQLEQPIRLEP 98 (249)
T ss_pred hhChHHHcCCcEEEEE
Confidence 2333322 46676654
No 75
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=89.66 E-value=1 Score=27.66 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=35.3
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCC--chhh-cceeEEE-ECCeecCC-----CCccCCCCEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPN--LEEI-RGCMVLA-LNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~--l~~~-~~~~~va-VNg~~v~~-----d~~L~dGDeVai 98 (105)
....+.+|...++++|+..|.+.+.. .... .....+. .+|...+. +..+.+||.+.+
T Consensus 13 ~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 13 RQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp -EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 57899999999999999999887641 1111 1134555 67776653 567889998876
No 76
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=88.65 E-value=3.6 Score=24.63 Aligned_cols=55 Identities=15% Similarity=0.028 Sum_probs=39.3
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC------CccCCCCEEEE
Q 034057 41 LTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS------VIVNEKDELAI 98 (105)
Q Consensus 41 ~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d------~~L~dGDeVai 98 (105)
.....++++...||++|...+..... +.. ....+.-+|+....+ .-+++||.|.+
T Consensus 9 g~~~~l~v~~~~TV~~lK~~I~~~~g-ip~--~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 9 ETTFSLDVDPDLELENFKALCEAESG-IPA--SQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCEEEEEECCcCCHHHHHHHHHHHhC-CCH--HHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 35678999888999999999988753 211 223556788887543 45788988765
No 77
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=88.52 E-value=4 Score=25.09 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=43.7
Q ss_pred eEEEEEecHHhHhhcCCCceEEE-eCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLE-VSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~ve-v~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai 98 (105)
|+|.|+-. .|.....++ ++...||++|.+.+.+... +.. ..-.+.-+|+.... ++-+++|+.|.+
T Consensus 1 M~I~vk~~------~G~~~~~l~~v~~~~TV~~lK~~i~~~~g-i~~--~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l 71 (78)
T cd01797 1 MWIQVRTM------DGKETRTVDSLSRLTKVEELREKIQELFN-VEP--ECQRLFYRGKQMEDGHTLFDYNVGLNDIIQL 71 (78)
T ss_pred CEEEEEcC------CCCEEEEeeccCCcCcHHHHHHHHHHHhC-CCH--HHeEEEeCCEECCCCCCHHHcCCCCCCEEEE
Confidence 56666443 243223564 5667899999999987652 211 22355668888764 467899999988
Q ss_pred Ec
Q 034057 99 IP 100 (105)
Q Consensus 99 iP 100 (105)
+.
T Consensus 72 ~~ 73 (78)
T cd01797 72 LV 73 (78)
T ss_pred EE
Confidence 74
No 78
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=88.08 E-value=1.9 Score=26.41 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=43.0
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
+|+|..+..-.. -.....-+-+|+ |+.+|++.-.+++..- ....+.-||--++.=..|+|||.+.|+
T Consensus 3 RVtI~~~~~~~~-~~~~GKvi~lP~--SleeLl~ia~~kfg~~----~~~v~~~dgaeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 3 RVTIFPNHPPEK-GRRAGKVIWLPD--SLEELLKIASEKFGFS----ATKVLNEDGAEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred EEEEecCCCCcc-cCcCCEEEEcCc--cHHHHHHHHHHHhCCC----ceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence 455554444333 111234667774 9999999999998642 234555566656666789999998764
No 79
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=88.03 E-value=4.3 Score=24.71 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=41.5
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEE--ECCeecCC-----CCccCCCCEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLA--LNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~va--VNg~~v~~-----d~~L~dGDeVa 97 (105)
|.|+|++- .....++++...|+++|.+.|.+... +..-+.. +++ +.|..... +..+++|+.|.
T Consensus 1 ~~i~vk~~--------g~~~~v~v~~~~Tv~~lK~~i~~~tg-vp~~~QK-Li~~~~~Gk~l~D~~~L~~~~i~~g~~i~ 70 (74)
T cd01813 1 VPVIVKWG--------GQEYSVTTLSEDTVLDLKQFIKTLTG-VLPERQK-LLGLKVKGKPAEDDVKISALKLKPNTKIM 70 (74)
T ss_pred CEEEEEEC--------CEEEEEEECCCCCHHHHHHHHHHHHC-CCHHHEE-EEeecccCCcCCCCcCHHHcCCCCCCEEE
Confidence 45666663 34678889888999999999988652 2111122 222 34655543 35688999988
Q ss_pred EE
Q 034057 98 II 99 (105)
Q Consensus 98 ii 99 (105)
++
T Consensus 71 lm 72 (74)
T cd01813 71 MM 72 (74)
T ss_pred EE
Confidence 76
No 80
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=87.53 E-value=0.75 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=17.4
Q ss_pred eeEEEECCeecC---CCCccCCCCEEEE
Q 034057 74 CMVLALNEEYTN---ASVIVNEKDELAI 98 (105)
Q Consensus 74 ~~~vaVNg~~v~---~d~~L~dGDeVai 98 (105)
.-.+.|||+..+ .+..|++||.|.|
T Consensus 40 ~W~~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 40 YWMYYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEEEEETTEE-SS-CCC-B--TTEEEEE
T ss_pred eeEEEECCEEhhcCcceeEeCCCCEEEe
Confidence 557889999976 4789999999986
No 81
>PLN02560 enoyl-CoA reductase
Probab=86.97 E-value=2.8 Score=32.58 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=20.4
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPN 67 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~ 67 (105)
.+++++...|++||...+.++.+.
T Consensus 16 ~~lev~~~aTV~dLK~~Isk~~~~ 39 (308)
T PLN02560 16 GGLEVPDSATVADLKKAIHKRKKK 39 (308)
T ss_pred eeEEcCCCCcHHHHHHHHHHHcCC
Confidence 478898889999999999987654
No 82
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=86.74 E-value=3.4 Score=26.84 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=38.8
Q ss_pred EEEEecHHhHhhcCCCceEEEeC--CCCCHHHHHHHHHHhC-CCchhhcceeEEEECCeecCCCC
Q 034057 27 IKVLFFARARDLTGLTDMPLEVS--CGSTTQDCLNKLIARF-PNLEEIRGCMVLALNEEYTNASV 88 (105)
Q Consensus 27 V~V~~fg~lre~~g~~~~~vev~--~~~tv~dLl~~L~~~~-p~l~~~~~~~~vaVNg~~v~~d~ 88 (105)
++|+|-..+ ....++++ ..+|+.+|...+.+.. |..+. ...++.-||+.....+
T Consensus 3 l~IRFs~si------pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~--~rLRlI~~Gr~L~d~t 59 (97)
T PF10302_consen 3 LTIRFSDSI------PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSR--RRLRLIYAGRLLNDHT 59 (97)
T ss_pred EEEEECCCC------CCceeecCCCCcccHHHHHHHHHhhcCCCCcc--ccEEeeecCcccCccc
Confidence 678887744 34677776 6689999999999988 44442 4567778998876543
No 83
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=86.43 E-value=6.7 Score=27.97 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=45.8
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-CCCccC-----CCC----E
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-ASVIVN-----EKD----E 95 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-~d~~L~-----dGD----e 95 (105)
.|-|..|..+- + .....+.+|..+|+.+|...|...+|........+.+.-|+.... .+..+. +.| .
T Consensus 2 ~Vlvss~~g~~--l-p~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~ 78 (162)
T PF13019_consen 2 NVLVSSFDGLT--L-PPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT 78 (162)
T ss_pred eEEEecCCCCC--C-CCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence 44555554431 1 256788899889999999999998875432211123333555543 233221 222 5
Q ss_pred EEEEcCCCCC
Q 034057 96 LAIIPPISGG 105 (105)
Q Consensus 96 VaiiPPvsGG 105 (105)
+.+.+++-||
T Consensus 79 l~l~~rl~GG 88 (162)
T PF13019_consen 79 LRLSLRLRGG 88 (162)
T ss_pred EEEEEeccCC
Confidence 7888888887
No 84
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=86.29 E-value=5.4 Score=26.48 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=41.6
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCC-chh---hcceeEEEECCeecCCCCcc
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPN-LEE---IRGCMVLALNEEYTNASVIV 90 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~-l~~---~~~~~~vaVNg~~v~~d~~L 90 (105)
+.++++++ -|.+...+.++..+|+.+|.+.|-..+|. +.. -...+++...|++...+..|
T Consensus 3 i~lkf~l~------~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL 66 (111)
T PF13881_consen 3 IELKFRLA------DGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTL 66 (111)
T ss_dssp EEEEEEET------TS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBT
T ss_pred EEEEEEEe------CCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcH
Confidence 45666555 36556788888899999999999999974 332 13578899999998754433
No 85
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=86.26 E-value=1.1 Score=32.92 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.4
Q ss_pred cceeEEEECCeecC-CCCccCCCCEEEE
Q 034057 72 RGCMVLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 72 ~~~~~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
..+=.|+|||+.|+ +.+.++.||+|.|
T Consensus 116 V~HGHI~VnGk~V~iPSy~V~~gdei~V 143 (205)
T COG0522 116 VSHGHILVNGKRVNIPSYLVSPGDEISV 143 (205)
T ss_pred hhcceEEECCEEeccCcEEecCCCEEEe
Confidence 45568999999997 7999999999987
No 86
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=86.18 E-value=1.5 Score=32.75 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=43.9
Q ss_pred ceEEEEEecHHhHhhcC-CCceEEEeCCCCCHHHHHHHHHHhC-CCch--h-----hcceeEEEECCeecC-CCCccCC-
Q 034057 24 SIQIKVLFFARARDLTG-LTDMPLEVSCGSTTQDCLNKLIARF-PNLE--E-----IRGCMVLALNEEYTN-ASVIVNE- 92 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g-~~~~~vev~~~~tv~dLl~~L~~~~-p~l~--~-----~~~~~~vaVNg~~v~-~d~~L~d- 92 (105)
.|+++|+=|-+=.+..+ .....++++++.||.++|..+.+.. |.|. . +=..+.+.|||+.+- -.+.+.+
T Consensus 6 ~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~~~~~ 85 (244)
T PRK12385 6 NLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDY 85 (244)
T ss_pred EEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhHHHHc
Confidence 36666665554222222 2345566668899999999998765 5442 1 112378899998753 2444443
Q ss_pred CCEEEEE
Q 034057 93 KDELAII 99 (105)
Q Consensus 93 GDeVaii 99 (105)
++.+.|-
T Consensus 86 ~~~~~ie 92 (244)
T PRK12385 86 TGGMKVE 92 (244)
T ss_pred CCCeEEe
Confidence 2334443
No 87
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=85.81 E-value=1.8 Score=31.58 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=37.6
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhC-CCchhh-------cceeEEEECCeec-CCCCccCC-CCE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARF-PNLEEI-------RGCMVLALNEEYT-NASVIVNE-KDE 95 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~-p~l~~~-------~~~~~vaVNg~~v-~~d~~L~d-GDe 95 (105)
...++++++.||-+++..+...+ |.+.-- =..+.+.|||+.+ .-.+.+.+ |..
T Consensus 16 ~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~ 78 (220)
T TIGR00384 16 SYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQP 78 (220)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCC
Confidence 45667778999999999988544 554311 1246899999886 45778888 875
No 88
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=84.96 E-value=1.5 Score=24.60 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.0
Q ss_pred eEEEECCeec-CCCCccCCCCEEEEEc
Q 034057 75 MVLALNEEYT-NASVIVNEKDELAIIP 100 (105)
Q Consensus 75 ~~vaVNg~~v-~~d~~L~dGDeVaiiP 100 (105)
=.|.|||+.+ ...+.+..||.|.+..
T Consensus 26 g~V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 26 GHVLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred CCEEECCEEccCCccCcCCCCEEEEcC
Confidence 3688999998 7889999999998753
No 89
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=84.72 E-value=2.2 Score=33.17 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=40.1
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhC-CCchh---h----cceeEEEECCeecC-CCCccCC------------CCEEEEEc
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARF-PNLEE---I----RGCMVLALNEEYTN-ASVIVNE------------KDELAIIP 100 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~-p~l~~---~----~~~~~vaVNg~~v~-~d~~L~d------------GDeVaiiP 100 (105)
.+.+++++++.||-|++..+.... |.|.- . =..|.+-|||+.+- -.+.+.+ +++|.|=|
T Consensus 19 ~~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~~~~~~~~~~~~~~~~i~ieP 98 (329)
T PRK12577 19 QTYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGSELARLSDSNSGAIPEITIAP 98 (329)
T ss_pred EEEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhhhhccccccccCCCCeEEEEE
Confidence 346777888999999999998876 44431 1 12578999998753 3455543 36776654
No 90
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=84.66 E-value=3.1 Score=27.67 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=38.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhC-CCchh-------hcceeEEEECCeec-CCCCccCCCC-----EEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARF-PNLEE-------IRGCMVLALNEEYT-NASVIVNEKD-----ELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~-p~l~~-------~~~~~~vaVNg~~v-~~d~~L~dGD-----eVaiiP 100 (105)
+.+++++.++||-++|..+.++. |.|+- +=..+.+.|||+.. .-.+.+.+.. +|.|=|
T Consensus 20 ~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~~~~~~~~i~IeP 91 (110)
T PF13085_consen 20 EYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDLIEKFGNVITIEP 91 (110)
T ss_dssp EEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGCTTSETBEEEEEE
T ss_pred EEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhccCCCcceEEEEE
Confidence 34566677899999999999885 55532 12478999999984 3345554443 566654
No 91
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=84.15 E-value=3.2 Score=31.94 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=23.7
Q ss_pred ceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 73 GCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 73 ~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
..=.|.|||+.+..++.|+.||+|.+.+
T Consensus 43 ~~G~V~VNg~~v~~~~~v~~GD~I~i~~ 70 (317)
T PRK11025 43 RKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 (317)
T ss_pred HcCCEEECCEEcCcccccCCCCEEEeCC
Confidence 3347889999999999999999999854
No 92
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=84.08 E-value=6.6 Score=23.14 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=40.1
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
....++++...|++++.+.+..+.. +.. ....+.-+|+.... +.-+++|+.|.+.
T Consensus 9 ~~~~~~v~~~~tV~~lK~~i~~~~g-i~~--~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 9 HTFPVEVDPDTDIKQLKEVVAKRQG-VPP--DQLRVIFAGKELRNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHC-CCH--HHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4778899888999999999988752 211 23456688888764 4568888888654
No 93
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=83.48 E-value=3.7 Score=30.59 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=37.3
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhC-CCchh-------hcceeEEEECCeecC-CCCccCC-CC-EEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARF-PNLEE-------IRGCMVLALNEEYTN-ASVIVNE-KD-ELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~-p~l~~-------~~~~~~vaVNg~~v~-~d~~L~d-GD-eVaiiP 100 (105)
+.++++++++||-|+|..+.++. |.|+- +=..+.+.|||+..- =.+.+.+ ++ +|.|=|
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~v~~~~~~~i~ieP 93 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTLTSDYPDGVITLMP 93 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhccHhhcCCCcEEEEE
Confidence 44555667899999999998764 55531 224789999999853 2343433 22 555543
No 94
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=83.40 E-value=3 Score=25.98 Aligned_cols=48 Identities=13% Similarity=-0.060 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhCCC--chhhcceeEEEECCeecC-CCCccCCCCEEEE
Q 034057 51 GSTTQDCLNKLIARFPN--LEEIRGCMVLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 51 ~~tv~dLl~~L~~~~p~--l~~~~~~~~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
-.|+.+|++.+.--..+ .+.++..--|.|||+.-. .-..|.+||.|.|
T Consensus 11 ~I~L~qlLK~~g~i~sGG~AK~~i~eg~V~vNGe~EtRRgkKlr~gd~V~i 61 (73)
T COG2501 11 FITLGQLLKLAGLIESGGQAKAFIAEGEVKVNGEVETRRGKKLRDGDVVEI 61 (73)
T ss_pred eEEHHHHHHHhCcccCcHHHHHHHHCCeEEECCeeeeccCCEeecCCEEEE
Confidence 47999999988765432 223455568999999864 5788999999987
No 95
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=82.48 E-value=8.3 Score=23.14 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=38.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVaii 99 (105)
+...++++...||++|.+.+.+... +.. ....+...|+....+ +-+++|..|-++
T Consensus 9 ~~~~l~v~~~~TV~~lK~~I~~~~g-i~~--~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 9 KDVKLSVSSKDTVGQLKKQLQAAEG-VDP--CCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhC-CCH--HHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 5788999888999999999987642 221 123455788887653 567778877765
No 96
>PRK11507 ribosome-associated protein; Provisional
Probab=82.09 E-value=2.4 Score=26.19 Aligned_cols=47 Identities=4% Similarity=-0.144 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhCCC--chhhcceeEEEECCeecC-CCCccCCCCEEEE
Q 034057 52 STTQDCLNKLIARFPN--LEEIRGCMVLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 52 ~tv~dLl~~L~~~~p~--l~~~~~~~~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
+++.+|+++..--..+ .+.++..-.|.|||+.-. .-..|.+||.|.|
T Consensus 12 I~L~QlLK~~~~v~SGG~AK~~I~eg~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred EEHHHHHhhhCcccChHHHHHHHHcCceEECCEEecccCCCCCCCCEEEE
Confidence 6889998876654322 222445568999999864 5788999999987
No 97
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=81.76 E-value=2.3 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=23.8
Q ss_pred ceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 73 GCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 73 ~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
+.=.|.|||..+-+...++.||+|.|-
T Consensus 32 ~~GrV~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 32 EGGRVKVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred HCCeEEECCEEcccccccCCCCEEEEE
Confidence 344899999999999999999999875
No 98
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=81.10 E-value=10 Score=23.18 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=37.7
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-C-----CCccC-CCCEEEEE
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-A-----SVIVN-EKDELAII 99 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-~-----d~~L~-dGDeVaii 99 (105)
+.....++++...||++|.+.|..+.. +.. ..-++ .+|+... . +.-++ +||.+.++
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~g-ip~--~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYG-FPP--AVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHC-cCH--HHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 345678999888999999999987752 211 12244 6776653 2 34666 78888775
No 99
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=80.54 E-value=5.2 Score=24.11 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=27.6
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPN 67 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~ 67 (105)
+++|+.| |.....+.++.+.|..+|...+...++-
T Consensus 2 ~~vK~~~--------~~~~~~~~~~~~~s~~dL~~~i~~~~~~ 36 (81)
T smart00666 2 VDVKLRY--------GGETRRLSVPRDISFEDLRSKVAKRFGL 36 (81)
T ss_pred ccEEEEE--------CCEEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 4567766 3346678888899999999999999873
No 100
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=80.37 E-value=2.3 Score=31.20 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=25.4
Q ss_pred eeEEEECCeec---CCCCccCCCCEEEEEcCCCC
Q 034057 74 CMVLALNEEYT---NASVIVNEKDELAIIPPISG 104 (105)
Q Consensus 74 ~~~vaVNg~~v---~~d~~L~dGDeVaiiPPvsG 104 (105)
.|-++-||.++ +.|+.|.+||++.|+-|+.|
T Consensus 119 ~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~ 152 (206)
T PF06241_consen 119 VCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNG 152 (206)
T ss_pred eeeeeeCCeeEECCCCCceeecCCEEEEEeecCC
Confidence 36677888886 35789999999999999865
No 101
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=80.12 E-value=5.8 Score=31.62 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=38.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCC-Cchh---hcceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFP-NLEE---IRGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p-~l~~---~~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
++.+-+..|.||.|+.+.|...+- .|+- |.+ .+-.+++.|++|++|.|+|.|.|+
T Consensus 305 ~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGk--Svk~~~QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 305 DEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGK--SVKHPGQRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred CCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEecc--CCCCCccccCcCcCccCCCeEEEe
Confidence 356777889999999988865431 1211 111 233567778899999999999986
No 102
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=79.92 E-value=0.77 Score=27.90 Aligned_cols=48 Identities=13% Similarity=-0.058 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHhCC--CchhhcceeEEEECCeecC-CCCccCCCCEEEE
Q 034057 51 GSTTQDCLNKLIARFP--NLEEIRGCMVLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 51 ~~tv~dLl~~L~~~~p--~l~~~~~~~~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
.+++.+||++..--.. +.+.++..-.|.|||+... ....|.+||.|.|
T Consensus 7 ~I~L~qlLK~~glv~sGGeAK~~I~~g~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 7 YITLGQLLKLAGLVSSGGEAKALIQEGEVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp ---HHHHHHHHTS-SSSSTTSHHHHHHHHEETTB----SS----SSEEEEE
T ss_pred cEEHHHHHhHcCCcccHHHHHHHHHcCceEECCEEccccCCcCCCCCEEEE
Confidence 4789999987765432 2233444557899999865 5789999999987
No 103
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=79.88 E-value=11 Score=28.90 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=42.5
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeC--C-CCCHHHHHHHHHHhC-CCchh-------hcceeEEEECCeecC-CCCccCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVS--C-GSTTQDCLNKLIARF-PNLEE-------IRGCMVLALNEEYTN-ASVIVNE 92 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~--~-~~tv~dLl~~L~~~~-p~l~~-------~~~~~~vaVNg~~v~-~d~~L~d 92 (105)
|+++|+=|-.=.+..+ ...+++++ . ++||-|+|..+.++. |.|.- +=..+.+.|||+..- =.+.|.+
T Consensus 44 ~~~~i~R~~p~~~~~~-~~~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~ 122 (276)
T PLN00129 44 KEFQIYRWNPDNPGKP-HLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDR 122 (276)
T ss_pred EEEEEEeeCCCCCCCc-eeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhh
Confidence 6666664432111111 23455555 3 689999999998754 55531 224789999999853 2444543
Q ss_pred C--CEEEEE
Q 034057 93 K--DELAII 99 (105)
Q Consensus 93 G--DeVaii 99 (105)
. ++|.|=
T Consensus 123 ~~~~~i~ie 131 (276)
T PLN00129 123 DESGPTTIT 131 (276)
T ss_pred cCCCcEEEE
Confidence 2 355543
No 104
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=79.37 E-value=2.5 Score=29.58 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=25.9
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCC-CCHHHHHHHHHHhCCCchhhcceeEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCG-STTQDCLNKLIARFPNLEEIRGCMVLAL 79 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~-~tv~dLl~~L~~~~p~l~~~~~~~~vaV 79 (105)
|+|+|.| |.....+-+.++ .+|++|+.+...+|..+....+..+|.|
T Consensus 1 mkvtV~f--------g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V 48 (145)
T PF12053_consen 1 MKVTVCF--------GRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVV 48 (145)
T ss_dssp -EEEEEE--------TTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEE
T ss_pred CeEEEEe--------CCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEE
Confidence 7788765 433455555555 7999999999988854433223334444
No 105
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=78.82 E-value=4.1 Score=31.22 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHhCC--CchhhcceeEEEECCeecCCCCccCCCCEEEEEcCC
Q 034057 50 CGSTTQDCLNKLIARFP--NLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPI 102 (105)
Q Consensus 50 ~~~tv~dLl~~L~~~~p--~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPv 102 (105)
.+..+..++..|.. ++ .+.++...-.|.|||..+.....|..||.|.+-+|.
T Consensus 11 ~g~rld~~L~~l~~-~sr~~~~~~i~~g~v~vNg~~v~~~~~l~~gd~i~~~~~~ 64 (289)
T COG0564 11 AGQRLDKFLAKLLP-ISRSRIQKLIRKGRVRVNGKKVKPSYKLKPGDVVRIPLPE 64 (289)
T ss_pred cCCCHHHHHHHccC-cCHHHHHHHHHCCCEEECCEEccCCeeeCCCCEEEEeccc
Confidence 35567666655332 22 122333334799999999999999999999998764
No 106
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=78.72 E-value=4.8 Score=30.70 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=31.4
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhC-CCchhh-------cceeEEEECCeecC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARF-PNLEEI-------RGCMVLALNEEYTN 85 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~-p~l~~~-------~~~~~vaVNg~~v~ 85 (105)
....++++.+.||-|++..+...+ |.|.-. =..+.+.|||+.+-
T Consensus 25 ~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~l 76 (279)
T PRK12576 25 QEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRL 76 (279)
T ss_pred EEEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEec
Confidence 345677788999999999998765 544321 12578999998753
No 107
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=78.16 E-value=9.1 Score=22.76 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=34.0
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHH---HHHHHHhCCCchhhcceeEEEECCeecC
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDC---LNKLIARFPNLEEIRGCMVLALNEEYTN 85 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dL---l~~L~~~~p~l~~~~~~~~vaVNg~~v~ 85 (105)
+|.|+|+....+ .......+.+|..+|..+| +..|. ++..+- -.+.++|||+.+.
T Consensus 1 qv~v~F~t~~~~-~~~~~~~~~VP~~~t~~~Ls~LvN~LL---~~~~~~-vpfdF~i~~~~lr 58 (65)
T PF08154_consen 1 QVQVQFVTEDGE-YEVPGTPISVPSNITRKELSELVNQLL---DDEEEP-VPFDFLINGEELR 58 (65)
T ss_pred CEEEEEEcCCCC-ccCCCCCEEEeCCCCHHHHHHHHHHHh---ccCCCC-CcEEEEECCEEee
Confidence 477888888874 2233457888887776554 44444 111111 2468899998764
No 108
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=78.05 E-value=1.7 Score=25.32 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=18.6
Q ss_pred eeEEEECCeecCC--CCccCCCCEEEE
Q 034057 74 CMVLALNEEYTNA--SVIVNEKDELAI 98 (105)
Q Consensus 74 ~~~vaVNg~~v~~--d~~L~dGDeVai 98 (105)
.--++|||..+.. ...|++||+|.|
T Consensus 41 ~ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 41 TNGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp SS-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CCcEEECCEEcCCCCEEECCCCCEEEc
Confidence 3467789988876 578999999976
No 109
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=78.02 E-value=2.5 Score=25.57 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=29.0
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCc
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNL 68 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l 68 (105)
++++|+.|-+..+- .+.++.+.+..+|...+...||..
T Consensus 1 t~~vK~~~~~~~~~-------~~~~~~~~s~~~L~~~i~~~~~~~ 38 (84)
T PF00564_consen 1 TVRVKVRYGGDIRR-------IISLPSDVSFDDLRSKIREKFGLL 38 (84)
T ss_dssp SEEEEEEETTEEEE-------EEEECSTSHHHHHHHHHHHHHTTS
T ss_pred CEEEEEEECCeeEE-------EEEcCCCCCHHHHHHHHHHHhCCC
Confidence 35677777665432 477888889999999999999754
No 110
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=75.23 E-value=4.4 Score=29.52 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=24.6
Q ss_pred cceeEEEECCeecC-CCCccCCCCEEEEEcC
Q 034057 72 RGCMVLALNEEYTN-ASVIVNEKDELAIIPP 101 (105)
Q Consensus 72 ~~~~~vaVNg~~v~-~d~~L~dGDeVaiiPP 101 (105)
...=.|.|||+.+. +.+.|++||.|.|-..
T Consensus 115 I~~G~V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 115 VSHGHILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred HHCCcEEECCEEECCCCcCCCCCCEEEECCc
Confidence 34447899999997 7999999999998654
No 111
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=75.18 E-value=5.8 Score=24.87 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=34.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCC-------ccCCCCEEEE
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASV-------IVNEKDELAI 98 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~-------~L~dGDeVai 98 (105)
.+++++...||++|.+.+.+.+|..-. .+.-++.-.|+....+. .+.+|..|-+
T Consensus 16 ~~ve~~~~~TV~~lK~~i~~~~~~~~~-~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHL 76 (79)
T cd01790 16 QTVSCFLNWTVGELKTHLSRVYPSKPL-EQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHL 76 (79)
T ss_pred EEEecCCcChHHHHHHHHHHhcCCCCC-hhHeEEEEcCeeccchhhHHHHhhcccCCceEEE
Confidence 556667789999999999988753111 12345667788776442 2555555544
No 112
>PRK09602 translation-associated GTPase; Reviewed
Probab=75.15 E-value=6.2 Score=31.55 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=36.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCC-CchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFP-NLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p-~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
..+.++.|+|+.|+-..+-.... ++.... .+-+++.++.|++|+|||.|.|+.
T Consensus 341 ~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~----~~~~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 341 DAFLLPKGSTARDLAYKIHTDIGEGFLYAI----DARTKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred eeEEECCCCCHHHHHHHHHHHHHhhceehh----cccCCcccCCCcEecCCCEEEEEe
Confidence 47888999999998776544331 111000 122677889999999999999984
No 113
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=74.96 E-value=9.9 Score=28.69 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=36.9
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHh-CCCchh-------hcceeEEEECCeecC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIAR-FPNLEE-------IRGCMVLALNEEYTN 85 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~-~p~l~~-------~~~~~~vaVNg~~v~ 85 (105)
.+++++|+=|-.-.. -..+.++++++++||-++|..|... -|.+.- .=..+.+.|||+.+-
T Consensus 3 ~~~~~~I~R~~~~~~--~~q~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~l 71 (251)
T PRK12386 3 YTAKFRVWRGDASGG--ELQDYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRL 71 (251)
T ss_pred cEEEEEEEcCCCCCC--ceEEEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEec
Confidence 345566554322111 1234566666789999999998753 243321 124689999999864
No 114
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=74.39 E-value=11 Score=28.30 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=46.1
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeC--CCCCHHHHHHHHHH-hCCCchh-------hcceeEEEECCeecC-CCCccCC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVS--CGSTTQDCLNKLIA-RFPNLEE-------IRGCMVLALNEEYTN-ASVIVNE 92 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~--~~~tv~dLl~~L~~-~~p~l~~-------~~~~~~vaVNg~~v~-~d~~L~d 92 (105)
.++++|+=|-.-.+ ....+++++| .+.||-|+|..+.. +.|.|.- +=.++.+.|||+..- -.+.+.+
T Consensus 2 ~~~~~i~R~~p~~~--~p~~~~yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~~ 79 (234)
T COG0479 2 TLKFKIYRYNPDDD--KPYWQTYEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMKD 79 (234)
T ss_pred cEEEEEEEECCCCC--CcceEEEEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhhh
Confidence 35666666666544 2234566655 78999999999984 5576542 125789999999853 2444433
Q ss_pred CC--EEEEEc
Q 034057 93 KD--ELAIIP 100 (105)
Q Consensus 93 GD--eVaiiP 100 (105)
-. +|.|-|
T Consensus 80 ~~~~~i~ieP 89 (234)
T COG0479 80 LEEGVITIEP 89 (234)
T ss_pred ccCCceEEEE
Confidence 21 455543
No 115
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=73.03 E-value=6.5 Score=24.48 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=27.6
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCee---c--C-----CCCccCCCCEEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEY---T--N-----ASVIVNEKDELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~---v--~-----~d~~L~dGDeVaiiP 100 (105)
...++++...|+.+|++.+.+.++- .. ....++.|... + . .+.-|+.||-|.+.|
T Consensus 15 ~~Rie~~~~~t~~~L~~kI~~~l~~-~~--~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 15 MKRIEVSPSSTLSDLKEKISEQLSI-PD--SSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP 79 (80)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHS----T--TT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred CEEEEcCCcccHHHHHHHHHHHcCC-CC--cceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence 4678888889999999999998741 10 11223333222 1 1 256789999997765
No 116
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=5.6 Score=26.00 Aligned_cols=66 Identities=9% Similarity=0.157 Sum_probs=45.4
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAI 98 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVai 98 (105)
-.|..++-++ +..+.-+.+...++.+-|++..+.+-..- .+.+++++||..+++| .-..++|+|..
T Consensus 23 ~hinLkvv~q-----d~telfFkiKktT~f~klm~af~~rqGK~---m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 23 KHINLKVVDQ-----DGTELFFKIKKTTTFKKLMDAFSRRQGKN---MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cccceEEecC-----CCCEEEEEEeccchHHHHHHHHHHHhCcC---cceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 3455555444 33466677877788999999988765321 3568999999999754 44677887653
No 117
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=71.97 E-value=30 Score=28.80 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=46.9
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
+.++|+|+.- +...++.++...||.+|.+.+...+..-. +...+.-.|++..+ .+-++||-.|-
T Consensus 14 ~~irV~Vkt~--------~dk~~~~V~~~ssV~qlKE~I~~~f~a~~---dqlvLIfaGrILKD~dTL~~~gI~Dg~TvH 82 (493)
T KOG0010|consen 14 SLIRVTVKTP--------KDKYEVNVASDSSVLQLKELIAQRFGAPP---DQLVLIYAGRILKDDDTLKQYGIQDGHTVH 82 (493)
T ss_pred ceeEEEEecC--------CcceeEecccchHHHHHHHHHHHhcCCCh---hHeeeeecCccccChhhHHHcCCCCCcEEE
Confidence 4477777653 34678888888999999999999883222 23455567888753 25688888887
Q ss_pred EE
Q 034057 98 II 99 (105)
Q Consensus 98 ii 99 (105)
++
T Consensus 83 LV 84 (493)
T KOG0010|consen 83 LV 84 (493)
T ss_pred EE
Confidence 65
No 118
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family. modifies uracil-65 in transfer RNAs to pseudouridine.
Probab=70.48 E-value=7.4 Score=29.32 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.8
Q ss_pred ceeEEEECCe-ecCCCCccCCCCEEEEE
Q 034057 73 GCMVLALNEE-YTNASVIVNEKDELAII 99 (105)
Q Consensus 73 ~~~~vaVNg~-~v~~d~~L~dGDeVaii 99 (105)
..=.|.|||. .+..++.|++||+|.|.
T Consensus 29 ~~G~V~VNg~~~~~~~~~v~~gd~I~i~ 56 (299)
T TIGR00005 29 ENGQVKVNGKVTANPKLKVKDGDRITVR 56 (299)
T ss_pred HCCcEEECCEeccCcccCCCCCCEEEEe
Confidence 3447889995 55789999999999984
No 119
>PLN02908 threonyl-tRNA synthetase
Probab=70.29 E-value=11 Score=32.21 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=40.1
Q ss_pred EEEeC-CCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEc
Q 034057 45 PLEVS-CGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 45 ~vev~-~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
..+.+ .++|+.++.+.+...++. ..++..|||+..+.+++|..+.+|.|+.
T Consensus 61 ~~~~~~~~tt~~~ia~~i~~~~~~-----~~v~a~Vng~l~dL~~~l~~d~~le~l~ 112 (686)
T PLN02908 61 VKDGKKWVTTPMDIAKEISKGLAN-----SALIAQVDGVLWDMTRPLEGDCKLKLFK 112 (686)
T ss_pred eEeecCCCCCHHHHHHHhCccchh-----hcEEEEECCEEeecCccccCCCeeEEec
Confidence 44444 348999999888765432 4578889999999999999999999985
No 120
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=69.38 E-value=16 Score=22.87 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=26.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
|+||+.| |.....+.++...++.+|.+.+..+++
T Consensus 1 ~~vK~~~--------~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 1 VRVKATY--------GEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred CEEEEEe--------CCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4566666 445678888888999999999999885
No 121
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=66.82 E-value=22 Score=21.41 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEE
Q 034057 49 SCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 49 ~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai 98 (105)
+...|+.+|...+...++.+..-+..+...-.|..+.. +.-+.+|.+|.|
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45689999999999876543211212221224555432 345677877654
No 122
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=66.31 E-value=8.1 Score=28.09 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=23.6
Q ss_pred cceeEEEECCeecC-CCCccCCCCEEEEEc
Q 034057 72 RGCMVLALNEEYTN-ASVIVNEKDELAIIP 100 (105)
Q Consensus 72 ~~~~~vaVNg~~v~-~d~~L~dGDeVaiiP 100 (105)
...=.|.|||+.+. +.+.|++||.|.|-.
T Consensus 112 I~~G~V~VNgk~v~~ps~~V~~GD~I~V~~ 141 (200)
T TIGR01017 112 VSHGHILVNGKKVDIPSYQVRPGDIISIKE 141 (200)
T ss_pred HHCCCEEECCEEeCCCCCCCCCCCEEEEee
Confidence 34557899999985 689999999998753
No 123
>PF01802 Herpes_V23: Herpesvirus VP23 like capsid protein; InterPro: IPR002690 This family consist of various capsid proteins from members of the Herpesviridae. The capsid protein VP23 in Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1) forms a triplex together with VP19C these fit between and link together adjacent capsomers as formed by VP5 and VP26 []. VP3 along with the scaffolding proteins helps to form normal capsids by defining the curvature of the shell and size of the particle [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=65.14 E-value=5.4 Score=31.00 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHhCCC-chhhcceeEEE----ECCee----cCCCCccCCCCEEEEEcCCCCC
Q 034057 53 TTQDCLNKLIARFPN-LEEIRGCMVLA----LNEEY----TNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 53 tv~dLl~~L~~~~p~-l~~~~~~~~va----VNg~~----v~~d~~L~dGDeVaiiPPvsGG 105 (105)
..-.++..+...+|. +.++.+.-+++ +++.+ ..+ ..+..||.|.++||+-|+
T Consensus 54 Dy~~l~~~lr~~t~aIl~~V~p~~l~l~~l~~g~~y~ikNTgP-f~w~ngd~l~liPPvf~~ 114 (296)
T PF01802_consen 54 DYLSLLSALRRRTLAILRRVEPNQLILTVLDHGQGYQIKNTGP-FDWCNGDQLCLIPPVFGR 114 (296)
T ss_pred cHHHHHHHHHhhhHHHHhhhcCCeEEEEecCCCCceEEeecCC-eeccCCCEEEEeCCCCCC
Confidence 456677777777765 23332211111 12211 134 678899999999999985
No 124
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=65.03 E-value=8.4 Score=29.60 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=22.9
Q ss_pred cceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 72 RGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 72 ~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
+..=.|.|||+.+...+.|.+||.|.|-
T Consensus 28 I~~G~V~VNGk~v~~~~~V~~gD~V~v~ 55 (290)
T PRK10475 28 IEQGNVFINGKRATIGDQVKAGDVVKVN 55 (290)
T ss_pred HHCCcEEECCEEccCCCCcCCCCEEEEC
Confidence 3344789999999888899999999873
No 125
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=64.84 E-value=8.4 Score=28.21 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=23.8
Q ss_pred cceeEEEECCeecC-CCCccCCCCEEEEEc
Q 034057 72 RGCMVLALNEEYTN-ASVIVNEKDELAIIP 100 (105)
Q Consensus 72 ~~~~~vaVNg~~v~-~d~~L~dGDeVaiiP 100 (105)
...=.|.|||+.+. +++.|++||+|.|-.
T Consensus 111 I~~G~V~VNGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 111 VNHGHILVNGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred HHCCcEEECCEEecCccccCCCCCEEEEcc
Confidence 34557899999995 689999999998753
No 126
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional
Probab=64.01 E-value=9.7 Score=27.75 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=21.5
Q ss_pred eEEEECCeecC-CCCccCCCCEEEEE
Q 034057 75 MVLALNEEYTN-ASVIVNEKDELAII 99 (105)
Q Consensus 75 ~~vaVNg~~v~-~d~~L~dGDeVaii 99 (105)
=.|.|||+.+. .++.|++||.|.+.
T Consensus 25 g~V~VNg~~~~~~~~~l~~gd~I~l~ 50 (232)
T PRK10839 25 NRVTVDGEIVKNGAFKLLPEHDVAYD 50 (232)
T ss_pred CeEEECCEEeccCCcCcCCCCEEEEC
Confidence 37889999986 78999999999874
No 127
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional
Probab=62.79 E-value=13 Score=28.55 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHhCC--CchhhcceeEEEECCeec-CCCCccCCCCEEEEEc
Q 034057 51 GSTTQDCLNKLIARFP--NLEEIRGCMVLALNEEYT-NASVIVNEKDELAIIP 100 (105)
Q Consensus 51 ~~tv~dLl~~L~~~~p--~l~~~~~~~~vaVNg~~v-~~d~~L~dGDeVaiiP 100 (105)
+.++..++.......+ .+..+...=.|.|||..+ ..++.|++||.|.+..
T Consensus 17 g~RLd~~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~v~~gD~I~v~~ 69 (325)
T PRK11180 17 GQRLDQALAELFPDYSRSRIKEWILDQRVLVNGKVINKPKEKVLGGEQVAIDA 69 (325)
T ss_pred CccHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCcCcCCCCEEEEee
Confidence 4566666544321111 122233344788999998 4788999999999874
No 128
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=62.57 E-value=17 Score=27.44 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHhC-CCchhhcceeEEEECCeec-CCCCccCCCCEEEE
Q 034057 51 GSTTQDCLNKLIARF-PNLEEIRGCMVLALNEEYT-NASVIVNEKDELAI 98 (105)
Q Consensus 51 ~~tv~dLl~~L~~~~-p~l~~~~~~~~vaVNg~~v-~~d~~L~dGDeVai 98 (105)
+..+..++....... .....+...=.|.|||..+ ..++.+++||.|.+
T Consensus 183 s~RLD~lls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~v~~gD~Isv 232 (257)
T TIGR03069 183 SLRIDAIASAGFGLSRSKIVDQIKAGRLRLNWKTVTQPSRELKVGDRLQL 232 (257)
T ss_pred cccHHHHHHhhhhhhHHHHHHHHHCCeEEECCEEcCCCCCcCCCCCEEEE
Confidence 345555544332100 1223344556899999998 68899999999876
No 129
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=62.01 E-value=31 Score=21.43 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHhCC-CchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 49 SCGSTTQDCLNKLIARFP-NLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 49 ~~~~tv~dLl~~L~~~~p-~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|...||.+|...+.++.+ +.-. .+..++.-.|+.... ++-+++|+.|.++
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~-~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv 73 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPD-PELIDLIHCGRKLKDDQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCC-hHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEE
Confidence 445799999999998853 1210 022355577777754 4678899988775
No 130
>PHA03258 Capsid triplex subunit 2; Provisional
Probab=61.72 E-value=6.7 Score=30.65 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHhCCC-chhhcceeEEEE----CCee-c---C-CCCccCCCCEEEEEcCCCCC
Q 034057 53 TTQDCLNKLIARFPN-LEEIRGCMVLAL----NEEY-T---N-ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 53 tv~dLl~~L~~~~p~-l~~~~~~~~vaV----Ng~~-v---~-~d~~L~dGDeVaiiPPvsGG 105 (105)
..-.++..+...+|. +.++.+.-.++. +|.+ + . +-..+..||.|.++||+.|+
T Consensus 58 Dyl~l~~~lr~~tlaIl~~V~p~~lil~~l~~~~~y~IkNTg~P~F~w~nGD~L~liPPvf~~ 120 (304)
T PHA03258 58 DYVAMYNYLSKCTLAILEEVNPDSLVLTRIDPGQTYQIKNKYQPFFQWDSHTQLSVIPPVFGR 120 (304)
T ss_pred cHHHHHHHHHHHHHHHHhhhcCCeEEEEecCCCceEEEEecCCCceeccCCCEEEEeCCcCCC
Confidence 445666677777765 233322222222 2333 2 1 22458899999999999885
No 131
>PHA03259 Capsid triplex subunit 2; Provisional
Probab=61.33 E-value=6.8 Score=30.59 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhCCC-chhhcceeEE-EE---CCee-cC--CCCccCCCCEEEEEcCCCCC
Q 034057 52 STTQDCLNKLIARFPN-LEEIRGCMVL-AL---NEEY-TN--ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 52 ~tv~dLl~~L~~~~p~-l~~~~~~~~v-aV---Ng~~-v~--~d~~L~dGDeVaiiPPvsGG 105 (105)
...-.++..+...+|. +.++.+.-++ -+ +|.+ +. --..+..||.|.++||+-||
T Consensus 53 pDyl~l~~~lr~~tlaIl~~V~p~~L~L~~~~~~~~y~IkNTgPF~w~nGD~L~liPPvf~~ 114 (302)
T PHA03259 53 RDYARIRTLLRNMTLTILRRVEGNQLLLGVPTHGHLYTIKNTGPVLWEKGDTLTLLPPLFTG 114 (302)
T ss_pred ccHHHHHHHHHHHhHHHHhhhcCCeEEEeecCCCceEEEEeccceeecCCCEEEEeCCcCCC
Confidence 3456667777777765 2333222222 11 1222 11 02457889999999999885
No 132
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=59.24 E-value=15 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred eEEEECCeecCCCCccCCCCEEEE
Q 034057 75 MVLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 75 ~~vaVNg~~v~~d~~L~dGDeVai 98 (105)
=.|.|||..+.+...+++||+|.|
T Consensus 34 G~V~vnG~~~Kps~~V~~gd~l~v 57 (133)
T PRK10348 34 GKVHYNGQRSKPSKIVELNATLTL 57 (133)
T ss_pred CCEEECCEECCCCCccCCCCEEEE
Confidence 367899999878899999999987
No 133
>PHA03257 Capsid triplex subunit 2; Provisional
Probab=58.27 E-value=8.3 Score=30.30 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHhCCC-chhhcceeEE--EEC-C----ee----cCCCCccCCCCEEEEEcCCCCC
Q 034057 53 TTQDCLNKLIARFPN-LEEIRGCMVL--ALN-E----EY----TNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 53 tv~dLl~~L~~~~p~-l~~~~~~~~v--aVN-g----~~----v~~d~~L~dGDeVaiiPPvsGG 105 (105)
..-.++..+...+|. +.++.+.-++ .+. + -+ ..+ ..+..||.|.++||+.|+
T Consensus 59 Dyl~l~~~lr~rtlAVl~rV~p~~Lia~~L~~g~~~~~y~IkNTgP-F~w~nGD~LcllPPvF~~ 122 (316)
T PHA03257 59 DTLSLLAAYRRRFPAVITRVLPGRMSAVALGVGPLPPGLFLQNTGP-FDLCNGDAVCLLPPIFGG 122 (316)
T ss_pred cHHHHHHHHHHHhHHHHhhhcCCeEEEEeccCCCCCCceEEEecCC-eeecCCCEEEEeCCcCCC
Confidence 445666777777765 2333222222 111 1 11 123 678899999999999885
No 134
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=55.60 E-value=17 Score=26.74 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=36.8
Q ss_pred CceEEEeC-CCCCHHHHHHHHHHhC-CCchhh-------cceeEEEECCeecC-CCCccCC--CCEEEEEc
Q 034057 42 TDMPLEVS-CGSTTQDCLNKLIARF-PNLEEI-------RGCMVLALNEEYTN-ASVIVNE--KDELAIIP 100 (105)
Q Consensus 42 ~~~~vev~-~~~tv~dLl~~L~~~~-p~l~~~-------~~~~~vaVNg~~v~-~d~~L~d--GDeVaiiP 100 (105)
...+++++ +++||-+++..+.+.. |.+.-- =..+.|.|||+.+- -.+.+.+ ++++.|=|
T Consensus 18 ~~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~~~~~~tiep 88 (232)
T PRK05950 18 QTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDLKKGKIVIRP 88 (232)
T ss_pred EEEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHcCCCeEEEEE
Confidence 34567777 8899999999987333 543211 12568999998742 2444443 55555543
No 135
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=53.36 E-value=61 Score=24.12 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=35.9
Q ss_pred eEEEeC--C-CCCHHHHHHHHHHhCCCchh-------hcceeEEEECCeecC-CCCccCC-CCEEEEEc
Q 034057 44 MPLEVS--C-GSTTQDCLNKLIARFPNLEE-------IRGCMVLALNEEYTN-ASVIVNE-KDELAIIP 100 (105)
Q Consensus 44 ~~vev~--~-~~tv~dLl~~L~~~~p~l~~-------~~~~~~vaVNg~~v~-~d~~L~d-GDeVaiiP 100 (105)
.+++++ . .+||-|+|..+.++.|.|+- +=..+.+.|||+..- =.+.+.+ +++|.|=|
T Consensus 23 ~~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~~~~~~~i~ieP 91 (235)
T PRK12575 23 QRYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNINGRNGLACLTNMQALPREIVLRP 91 (235)
T ss_pred EEEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcHhHcCCCEEEeE
Confidence 455554 3 47999999999866676542 225789999999853 2343332 24565543
No 136
>PTZ00258 GTP-binding protein; Provisional
Probab=52.09 E-value=35 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=34.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEEC------------------C--eecCCCCccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALN------------------E--EYTNASVIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVN------------------g--~~v~~d~~L~dGDeVaii 99 (105)
...+.++.|+|..++-..+-..+ ++ .+.-|.. | +..+.|+.|+|||.|.|.
T Consensus 315 ~raw~i~~Gsta~~aAg~IHsD~---~k---gFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~ 385 (390)
T PTZ00258 315 VRCWTIQKGTKAPQAAGVIHSDF---EK---GFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFK 385 (390)
T ss_pred eeEEEeCCCCcHHHHHhhhhhHH---hh---CcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEE
Confidence 45688899999988877665433 21 1222222 4 456789999999999985
No 137
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=51.74 E-value=12 Score=24.16 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=15.5
Q ss_pred CCCCccCCCCEEEEEcCCCCC
Q 034057 85 NASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 85 ~~d~~L~dGDeVaiiPPvsGG 105 (105)
.....|+.||+|.++| ..||
T Consensus 72 ~~~~~Lk~GD~V~ll~-~~~g 91 (100)
T PF10844_consen 72 TFTDGLKVGDKVLLLR-VQGG 91 (100)
T ss_pred EEecCCcCCCEEEEEE-ecCC
Confidence 3456899999999997 5554
No 138
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=49.93 E-value=24 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=20.2
Q ss_pred eEEEECCeecC--CCCccCCCCEEEEE
Q 034057 75 MVLALNEEYTN--ASVIVNEKDELAII 99 (105)
Q Consensus 75 ~~vaVNg~~v~--~d~~L~dGDeVaii 99 (105)
--+.||++.+. ....|.+||.|.|-
T Consensus 66 ~g~~vn~~~~~~~~~~~l~~gd~i~ig 92 (102)
T cd00060 66 NGTFVNGQRVSPGEPVRLRDGDVIRLG 92 (102)
T ss_pred CCeEECCEECCCCCcEECCCCCEEEEC
Confidence 35778998887 46789999999875
No 139
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=49.48 E-value=59 Score=19.84 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=35.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE-CC--eecCCC--CccCCCCEEEEEc
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL-NE--EYTNAS--VIVNEKDELAIIP 100 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV-Ng--~~v~~d--~~L~dGDeVaiiP 100 (105)
....+.+..|.|+.|+++.+.+++. |.. ........ ++ .+++++ ...-.|+||.+-+
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~-l~~-~~~~v~~~~~~~~~~~~~~~d~~~L~~~El~Ve~ 71 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRG-LNP-ECCDVFLLGLDEKKPLDLDTDSSSLAGEELEVEP 71 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcC-CCH-HHEEEEEecCCCcCCcCchhhhhhhcCCEEEEEe
Confidence 3567888889999999999998863 211 11222333 33 445554 3455788887754
No 140
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=49.16 E-value=68 Score=20.44 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHhCCCchh
Q 034057 49 SCGSTTQDCLNKLIARFPNLEE 70 (105)
Q Consensus 49 ~~~~tv~dLl~~L~~~~p~l~~ 70 (105)
+..++..+|.+.+...||.+.+
T Consensus 24 ~~~~s~~~L~~~V~~~f~~l~~ 45 (87)
T cd06402 24 DVSTSYEYLVEKVAAVFPSLRG 45 (87)
T ss_pred CCCcCHHHHHHHHHHHccccCC
Confidence 4446889999999999997753
No 141
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=48.17 E-value=71 Score=20.37 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.0
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
.|+|+|.|.| ....+.+|..++..+|.+.+.++++
T Consensus 2 ~ikVKv~~~~--------Dv~~i~v~~~i~f~dL~~kIrdkf~ 36 (86)
T cd06408 2 KIRVKVHAQD--------DTRYIMIGPDTGFADFEDKIRDKFG 36 (86)
T ss_pred cEEEEEEecC--------cEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3667777643 3457778888999999999999875
No 142
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.56 E-value=47 Score=20.29 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
+....++.+...+|..+++..+.++|.
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~ 40 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFH 40 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhC
Confidence 455678889999999999999999884
No 143
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=45.72 E-value=21 Score=29.23 Aligned_cols=43 Identities=28% Similarity=0.511 Sum_probs=33.4
Q ss_pred EEecHHhHhhcC--CCceEEEeCCCCCHHHHHHHHHHhCCCchhh
Q 034057 29 VLFFARARDLTG--LTDMPLEVSCGSTTQDCLNKLIARFPNLEEI 71 (105)
Q Consensus 29 V~~fg~lre~~g--~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~ 71 (105)
|.|.+.+.+.-- ...-.+++..+.|+.+....|..+||.|.++
T Consensus 248 vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~~~P~l~~L 292 (493)
T COG4630 248 VIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAGRYPALGEL 292 (493)
T ss_pred eEEecchhhhheeeecCCcEEEccCccHHHHHHHHHhhCchHHHH
Confidence 556666665532 2345788999999999999999999998874
No 144
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=45.71 E-value=54 Score=19.81 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
+.....+.++..+|..+++..+.++|.
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~ 37 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFG 37 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhC
Confidence 445678899999999999999999884
No 145
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=44.14 E-value=94 Score=25.11 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=43.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHh-CCCchhh-------cceeEEEECCeecC-CCCccCCCCE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIAR-FPNLEEI-------RGCMVLALNEEYTN-ASVIVNEKDE 95 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~-~p~l~~~-------~~~~~vaVNg~~v~-~d~~L~dGDe 95 (105)
++++|.=|-+=.+.-.-...+++++++.||-|++..+... .|.+.-. =..+.+.|||+.+- -.+.+.+|-+
T Consensus 4 ~~~~i~r~~~~~~~~~~~~~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~~~~~ 83 (486)
T PRK06259 4 ITITVKRFDPEKDEPHFESYEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEVEDGMI 83 (486)
T ss_pred EEEEEEecCCCCCCceeEEEEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCCCCCCE
Confidence 4455554433222112234556666899999988877654 3544211 12367789998753 4567777766
Q ss_pred EEEE
Q 034057 96 LAII 99 (105)
Q Consensus 96 Vaii 99 (105)
|..+
T Consensus 84 i~~~ 87 (486)
T PRK06259 84 IEPL 87 (486)
T ss_pred EEec
Confidence 6654
No 146
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=43.79 E-value=58 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=17.7
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
...++++...|+++|++.+.++|.
T Consensus 34 WDr~~v~~~~Tl~~li~~~~~~~~ 57 (125)
T PF09358_consen 34 WDRIEVNGDMTLQELIDYFKEKYG 57 (125)
T ss_dssp T-EEEEES--BHHHHHHHHHHTTS
T ss_pred eeEEEEcCCCCHHHHHHHHHHHhC
Confidence 456677667999999999999985
No 147
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=43.74 E-value=56 Score=24.90 Aligned_cols=47 Identities=6% Similarity=-0.015 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhC-CCchhhcceeEEEECCeec-CCCCccCCCCEEEE
Q 034057 52 STTQDCLNKLIARF-PNLEEIRGCMVLALNEEYT-NASVIVNEKDELAI 98 (105)
Q Consensus 52 ~tv~dLl~~L~~~~-p~l~~~~~~~~vaVNg~~v-~~d~~L~dGDeVai 98 (105)
..+..++..+.... ....++.+.=.|.||+..+ ..++.+++||.|.+
T Consensus 192 ~RLD~vla~~~~~SRsk~~~lI~~g~V~vN~~~v~~~s~~v~~gD~isi 240 (267)
T PLN00051 192 LRLDALASAGFRMSRSKLVDLISSGDVRVNWREVTKNGTTLKTGDVVSV 240 (267)
T ss_pred ccHHHHHHHHhccCHHHHHHHHHcCcEEECCEEcCCCCCCCCCCCEEEE
Confidence 45556555544111 1122344555789999998 57899999999976
No 148
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=43.48 E-value=37 Score=20.87 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=33.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhh------------cceeEEEECCee-cC-CCCccCCCCEEE
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEI------------RGCMVLALNEEY-TN-ASVIVNEKDELA 97 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~------------~~~~~vaVNg~~-v~-~d~~L~dGDeVa 97 (105)
..++++++.||.+.+.......|.+-.. =..++|-|||+. +. -.+++++|-+|.
T Consensus 11 ~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~ 78 (82)
T PF13510_consen 11 KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVE 78 (82)
T ss_dssp EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE
T ss_pred EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEE
Confidence 4677788999999999887776643221 125899999988 53 478999998775
No 149
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=42.53 E-value=94 Score=25.36 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=43.2
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHhCC-Cchh---hcceeEEEECCeecCC-----CCccCCCCEEEEEc
Q 034057 41 LTDMPLEVSCGSTTQDCLNKLIARFP-NLEE---IRGCMVLALNEEYTNA-----SVIVNEKDELAIIP 100 (105)
Q Consensus 41 ~~~~~vev~~~~tv~dLl~~L~~~~p-~l~~---~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiP 100 (105)
.+..++-+|....+.||+..|-+... .+.+ -......-.+|...+. +.-+.|||.+.+-|
T Consensus 11 ~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 11 RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 34678889999999999988776542 2211 1234566778888775 46799999999987
No 150
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=41.45 E-value=47 Score=29.63 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=43.7
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCc------hhh--cceeEEEECCeecC-CCCccCCCCEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNL------EEI--RGCMVLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l------~~~--~~~~~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
..++++++|+|+-+.+.......|.+ ..+ =..|+|-+||+.+. -.|++.+|.+|.-
T Consensus 12 g~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t 76 (978)
T COG3383 12 GRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRT 76 (978)
T ss_pred CeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEec
Confidence 45788899999999988888777754 222 24789999999875 5899999998864
No 151
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=40.17 E-value=89 Score=21.60 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=29.7
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA 86 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~ 86 (105)
....+-++.|.|...+.+.|.+.+... ++.....+.++.+.++.
T Consensus 20 ~~~~i~lsgGsTp~~~y~~L~~~~~~~-~w~~v~~f~~DEr~v~~ 63 (169)
T cd00458 20 DDMVIGLGTGSTPAYFYKLLGEKLKRG-EISDIVGFPTDERYVPL 63 (169)
T ss_pred CCEEEEECCCccHHHHHHHHHhhhhhC-CccceEEEECccccCCC
Confidence 356788999999999999998765431 33333455556655543
No 152
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=38.77 E-value=36 Score=23.38 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=21.4
Q ss_pred eeEEEECCeecCCCCccCCCCEEEEE
Q 034057 74 CMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 74 ~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
.-..+||+..+..+..+++||.|.|-
T Consensus 130 ~nGt~vn~~~v~~~~~l~~gd~i~i~ 155 (191)
T COG1716 130 TNGTYVNGEKVRQRVLLQDGDVIRLG 155 (191)
T ss_pred CcceEECCeEccCcEEcCCCCEEEEC
Confidence 34678888888888999999999874
No 153
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=38.36 E-value=85 Score=18.45 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=20.7
Q ss_pred ceEEEeC-CCCCHHHHHHHHHHhCCC
Q 034057 43 DMPLEVS-CGSTTQDCLNKLIARFPN 67 (105)
Q Consensus 43 ~~~vev~-~~~tv~dLl~~L~~~~p~ 67 (105)
...+.++ ...+..+|...|...++.
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~ 36 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGL 36 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCC
Confidence 4566677 789999999999999874
No 154
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=36.01 E-value=1.4e+02 Score=20.18 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=41.8
Q ss_pred ccccCCCCceEEEEEecHHhH-hhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-CCCc
Q 034057 16 ALVDNKESSIQIKVLFFARAR-DLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-ASVI 89 (105)
Q Consensus 16 ~~~~~~~~~m~V~V~~fg~lr-e~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-~d~~ 89 (105)
++.+.+...-+|.|+|=+.-. .++. ...+.++...|++.++.-|...-. | ...+.+.++||..+++ +|+.
T Consensus 20 t~~~~~~~~~kV~i~l~aiG~~PilK--~~k~~i~~t~tfa~vi~Flkk~Lk-l-~as~slflYVN~sFAPsPDq~ 91 (116)
T KOG3439|consen 20 TESASEKNIRKVQIRLRAIGDAPILK--KSKFKINPTQTFAKVILFLKKFLK-L-QASDSLFLYVNNSFAPSPDQI 91 (116)
T ss_pred ccccCCCCcceEEEEEeccCCCccee--cceEEeCcchhhHHHHHHHHHHhC-C-cccCeEEEEEcCccCCCchhH
Confidence 344444444566666654321 1222 345667777799999888875431 1 1136789999999986 4543
No 155
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=35.92 E-value=33 Score=21.61 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=16.7
Q ss_pred EEeCCCCCHHHHHHHHHHh
Q 034057 46 LEVSCGSTTQDCLNKLIAR 64 (105)
Q Consensus 46 vev~~~~tv~dLl~~L~~~ 64 (105)
++++...|+.++++.|.++
T Consensus 1 i~v~~~~TL~~lid~L~~~ 19 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEK 19 (84)
T ss_dssp EEESTTSBSHHHHHHHHHS
T ss_pred CCcCccchHHHHHHHHHhC
Confidence 4678889999999999986
No 156
>COG5417 Uncharacterized small protein [Function unknown]
Probab=35.23 E-value=1.2e+02 Score=19.17 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=39.9
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHh----CCCchhhcceeEEEE-C-CeecC-----CCCccCC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIAR----FPNLEEIRGCMVLAL-N-EEYTN-----ASVIVNE 92 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~----~p~l~~~~~~~~vaV-N-g~~v~-----~d~~L~d 92 (105)
.|+|+|-|- ..-| ....+.+|.-.+++.|+..+-+. ++.. +.+.|-| | ++..+ -|..+.+
T Consensus 4 ~ikVTvD~t----~y~g-~~yDLrl~d~~pikklIdivwe~~kis~~~r----eg~~Ikv~nKa~llsgd~kL~d~~Iad 74 (81)
T COG5417 4 HIKVTVDFT----NYNG-GTYDLRLPDYLPIKKLIDIVWESLKISIFDR----EGTQIKVMNKAQLLSGDDKLIDYQIAD 74 (81)
T ss_pred eEEEEEEeE----ecCC-ceEEEeccccchHHHHHHHHHHHhhcccccc----CCCEEEEeccceEecCCceEEeccccC
Confidence 355666543 2233 57788888888999888776553 2222 2223322 2 23322 3678999
Q ss_pred CCEEEEE
Q 034057 93 KDELAII 99 (105)
Q Consensus 93 GDeVaii 99 (105)
||.+.|+
T Consensus 75 GD~LeiL 81 (81)
T COG5417 75 GDILEIL 81 (81)
T ss_pred CCEEEeC
Confidence 9998874
No 157
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=34.39 E-value=54 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=20.5
Q ss_pred eeEEEECCeec---CCCCccCCCCEEEEE
Q 034057 74 CMVLALNEEYT---NASVIVNEKDELAII 99 (105)
Q Consensus 74 ~~~vaVNg~~v---~~d~~L~dGDeVaii 99 (105)
.++|.-|++.+ +++++|+.||.+.|+
T Consensus 116 IIAI~r~~e~I~SPgPy~vle~gDtlvvi 144 (162)
T COG0490 116 VIAIVRNEEKILSPGPYTVLEAGDTLVVI 144 (162)
T ss_pred EEEEEecCcEecCCCchhhhcCCCEEEEE
Confidence 45666688775 368999999999886
No 158
>smart00455 RBD Raf-like Ras-binding domain.
Probab=33.84 E-value=96 Score=18.60 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=34.1
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE--CCeecCCCC--ccCCCCEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL--NEEYTNASV--IVNEKDELAI 98 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV--Ng~~v~~d~--~L~dGDeVai 98 (105)
....+.+..+.|+.|+++.+.++|. +. ...+.+.. .+..+++++ ..-+|.|+.+
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~-l~--~~~~~v~~~g~~k~ldl~~~~~~l~~~el~v 67 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRG-LN--PECCVVRLRGEKKPLDLNQPISSLDGQELVV 67 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcC-CC--HHHEEEEEcCCCcceecCCccccccCceEEE
Confidence 4567788889999999999999874 21 12344444 234566653 2335666543
No 159
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=33.78 E-value=1.2e+02 Score=19.28 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 41 LTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 41 ~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
..+..+.+++..|.+++.+.|..+.
T Consensus 12 g~sK~l~V~~~~Ta~dV~~~L~~K~ 36 (85)
T cd01787 12 GASKSLEVDERMTARDVCQLLVDKN 36 (85)
T ss_pred CCeeEEEEcCCCcHHHHHHHHHHHh
Confidence 3578999999999999999999875
No 160
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=33.77 E-value=1.2e+02 Score=19.74 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=32.0
Q ss_pred ecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCc-hhhcceeEEEEC
Q 034057 31 FFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNL-EEIRGCMVLALN 80 (105)
Q Consensus 31 ~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l-~~~~~~~~vaVN 80 (105)
|-|+|+- +..-.++.+...+|+.+++...-.+|.-- .+......+-||
T Consensus 8 Y~G~L~~--~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ 56 (97)
T cd01783 8 YPGWLRV--GVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVL 56 (97)
T ss_pred ecCcccc--CcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEE
Confidence 6667874 44456777777889999998877787521 123355666676
No 161
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=33.10 E-value=81 Score=19.26 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=20.7
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
...+..++...|+.+|...|...+.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~G 38 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTG 38 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHT
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3567788889999999999988763
No 162
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=32.98 E-value=1.7e+02 Score=20.65 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchh-----hcceeEEEECCeecC
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEE-----IRGCMVLALNEEYTN 85 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~-----~~~~~~vaVNg~~v~ 85 (105)
|+...+.|++.+=| ...+++++.+.++.+.|+.+ ...+.+. .=..+.|.|||+.+.
T Consensus 2 ~~~~~~~i~~~vNG--------~~~~~~~~~~~~Ll~~LR~~--gltgtK~GC~~G~CGACtVlvdg~~v~ 62 (159)
T PRK09908 2 NHSETITIECTING--------MPFQLHAAPGTPLSELLREQ--GLLSVKQGCCVGECGACTVLVDGTAID 62 (159)
T ss_pred CCCCceeEEEEECC--------EEEEEecCCCCcHHHHHHHc--CCCCCCCCcCCCCCCCcEEEECCcEee
Confidence 44444555544433 35567778888999988864 2222111 113578899998774
No 163
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=32.98 E-value=60 Score=19.11 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=25.2
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL 79 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV 79 (105)
...+++++..+|.++|++.++.+- ++.+ .+.+-+.+
T Consensus 7 ~~~~~~v~~~~t~~~l~~~v~~~l-~l~e-~~~FgL~~ 42 (80)
T PF09379_consen 7 TTKTFEVDPKTTGQDLLEQVCDKL-GLKE-KEYFGLQY 42 (80)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHH-TTSS-GGGEEEEE
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHc-CCCC-ccEEEEEE
Confidence 457888888899999999999875 3333 23344444
No 164
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=32.52 E-value=52 Score=24.36 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.1
Q ss_pred eEEEECCeec-CCCCccCCCCEEEEE
Q 034057 75 MVLALNEEYT-NASVIVNEKDELAII 99 (105)
Q Consensus 75 ~~vaVNg~~v-~~d~~L~dGDeVaii 99 (105)
=.|.|||+.+ ...+.+.+||+|.+-
T Consensus 25 G~V~Vng~~v~k~s~~V~~~d~I~v~ 50 (228)
T TIGR00478 25 GFVLVNGKKVDKPSALVDFDAKIELL 50 (228)
T ss_pred CcEEECCEEeCCCCCCCCCCCEEecc
Confidence 3688999998 578999999999875
No 165
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=32.44 E-value=54 Score=18.70 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=14.8
Q ss_pred EEEECCeec--CCCCccCCCCEEEEEc
Q 034057 76 VLALNEEYT--NASVIVNEKDELAIIP 100 (105)
Q Consensus 76 ~vaVNg~~v--~~d~~L~dGDeVaiiP 100 (105)
.+.=++... ..++.|++||.|.++-
T Consensus 32 ~i~R~~~~~~p~~~~~l~~gD~l~v~g 58 (71)
T PF02080_consen 32 AIKRGGEIIIPDGDTVLQAGDILIVVG 58 (71)
T ss_dssp EEEETEEEES--TT-BE-TTEEEEEEE
T ss_pred EEEECCEEECCCCCCEECCCCEEEEEE
Confidence 343344443 3589999999998863
No 166
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=32.32 E-value=1.5e+02 Score=19.61 Aligned_cols=30 Identities=0% Similarity=0.050 Sum_probs=24.1
Q ss_pred cceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 72 RGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 72 ~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
.+.+.++-||+.+..+.-..+.|.+..+||
T Consensus 69 iPTf~~fk~G~~v~~~~G~~~~~~~~~~~~ 98 (114)
T cd02954 69 PPTVMFFFRNKHMKIDLGTGNNNKINWVFE 98 (114)
T ss_pred CCEEEEEECCEEEEEEcCCCCCceEEEecC
Confidence 578899999999987777777778877765
No 167
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=32.22 E-value=55 Score=20.09 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.1
Q ss_pred eCCCCCHHHHHHHHHHhCCC
Q 034057 48 VSCGSTTQDCLNKLIARFPN 67 (105)
Q Consensus 48 v~~~~tv~dLl~~L~~~~p~ 67 (105)
+++..|+.+++..|.+.|+.
T Consensus 40 ldg~~tv~eI~~~L~~~Y~~ 59 (81)
T TIGR03859 40 CDGKRSLAEIIQELAQRFPA 59 (81)
T ss_pred ccCCCcHHHHHHHHHHHcCC
Confidence 35567999999999999986
No 168
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=32.08 E-value=83 Score=18.80 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.3
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
...+.++..+|..+++..+.++|.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~ 41 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFG 41 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC
Confidence 678888888999999999999985
No 169
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.94 E-value=1.2e+02 Score=19.28 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=36.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPP 101 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPP 101 (105)
..+++|+++....+++--.+.|..-. .....|.-+|--+.+ +.-|+.|.|+.++|-
T Consensus 29 kv~svpestpftavlkfaaeefkvpa--atsaiitndgiginpaq~agnvflkhgselr~ipr 89 (94)
T KOG3483|consen 29 KVLSVPESTPFTAVLKFAAEEFKVPA--ATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPR 89 (94)
T ss_pred ceecCCCCCchHHHHHHHHHHccCCc--cceeEEecCccccCccccccceeeccCCEEEeccc
Confidence 45678888888899988888773211 112233334444443 456999999999985
No 170
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=31.79 E-value=1.1e+02 Score=18.53 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=17.2
Q ss_pred EEecHHhHhhcCCCceEEEeCCC
Q 034057 29 VLFFARARDLTGLTDMPLEVSCG 51 (105)
Q Consensus 29 V~~fg~lre~~g~~~~~vev~~~ 51 (105)
+.++|..-+.+|.....+.+++|
T Consensus 5 ie~~G~V~e~L~~~~f~V~l~ng 27 (68)
T TIGR00008 5 IEMEGKVTESLPNAMFRVELENG 27 (68)
T ss_pred EEEEEEEEEECCCCEEEEEECCC
Confidence 66778888888877777777654
No 171
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=29.99 E-value=1.3e+02 Score=18.01 Aligned_cols=31 Identities=23% Similarity=0.543 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCC-chhh------cceeEEEECCeec
Q 034057 54 TQDCLNKLIARFPN-LEEI------RGCMVLALNEEYT 84 (105)
Q Consensus 54 v~dLl~~L~~~~p~-l~~~------~~~~~vaVNg~~v 84 (105)
..++-+.|...||. +.++ ...+-|.+||+.|
T Consensus 17 a~~l~~~l~~~fp~~~~~v~~~~~~~G~FEV~v~g~lI 54 (76)
T PF10262_consen 17 ALELAQELLQTFPDRIAEVELSPGSTGAFEVTVNGELI 54 (76)
T ss_dssp HHHHHHHHHHHSTTTCSEEEEEEESTT-EEEEETTEEE
T ss_pred HHHHHHHHHHHCCCcceEEEEEeccCCEEEEEEccEEE
Confidence 56788889999987 2221 3467788888765
No 172
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=29.99 E-value=58 Score=18.66 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 034057 49 SCGSTTQDCLNKLIARFPN 67 (105)
Q Consensus 49 ~~~~tv~dLl~~L~~~~p~ 67 (105)
.++.|+.++++.|.++|+.
T Consensus 27 ~g~~t~~ei~~~l~~~y~~ 45 (68)
T PF05402_consen 27 DGPRTVEEIVDALAEEYDV 45 (68)
T ss_dssp -SSS-HHHHHHHHHHHTT-
T ss_pred cCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999953
No 173
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=29.54 E-value=1.7e+02 Score=19.41 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=35.7
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC------CCccCCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA------SVIVNEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~------d~~L~dGDeVaii 99 (105)
.+..+++..+.||.+|...+.+.+.- ....+ .+..||....+ ++=|.+|..|.+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V-~P~dQ--kL~~dG~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSV-APFDQ--NLSIDGKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcC-Ccccc--eeeecCceeccCCccHHhcCCCCCCEEEEE
Confidence 36788888889999999999887731 11112 34455775543 2456677777664
No 174
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=29.16 E-value=75 Score=20.79 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=19.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
-.++.++-++|++|++..|..++
T Consensus 14 f~Tls~~l~tTv~eli~~L~rK~ 36 (97)
T cd01775 14 FTTLSCPLNTTVSELIPQLAKKF 36 (97)
T ss_pred EEEEEcCCcCcHHHHHHHHHHhh
Confidence 45777888899999999999986
No 175
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=28.93 E-value=2.4e+02 Score=22.56 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=43.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC-CCchhhcceeEEEECCeecCCC-----CccCCCCEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF-PNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAI 98 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~-p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVai 98 (105)
|+|+||-+- ....++++....|+.++...|...- |++. ...-...-+|++..++ +.+.+++-|.|
T Consensus 1 m~lt~KtL~-------q~~F~iev~Pe~tV~evK~kIet~~g~dyP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 1 MKLTVKTLK-------QQTFTIEVKPEDTVVEVKKKIETEKGPDYP--AEQQKLIYSGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred CeeEeeecc-------CceeEeecCcchhHHHHHHHHHhccCCCCc--hhhheeeecceeccCCcchhhhccccCceEEE
Confidence 556655432 2456888877889999999887642 2221 1234566788887654 56777888877
Q ss_pred E
Q 034057 99 I 99 (105)
Q Consensus 99 i 99 (105)
+
T Consensus 72 M 72 (340)
T KOG0011|consen 72 M 72 (340)
T ss_pred E
Confidence 6
No 176
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=28.89 E-value=64 Score=20.40 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.3
Q ss_pred eCCCCCHHHHHHHHHHhCCCc
Q 034057 48 VSCGSTTQDCLNKLIARFPNL 68 (105)
Q Consensus 48 v~~~~tv~dLl~~L~~~~p~l 68 (105)
+++..|+.++++.|.++||+.
T Consensus 45 ~DG~~tv~eIi~~L~~~y~~~ 65 (88)
T PRK02079 45 IDGKRTVAAIIAELQQQFPDV 65 (88)
T ss_pred ccCCCCHHHHHHHHHHHccch
Confidence 355679999999999999764
No 177
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=28.29 E-value=1.8e+02 Score=19.89 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=26.9
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
+.++|.+.. | ....+.+...+|+++++..++.+.
T Consensus 4 ~~~~V~l~d------g-~~~~~~~~~~~t~~ev~~~v~~~~ 37 (207)
T smart00295 4 RVLKVYLLD------G-TTLEFEVDSSTTAEELLETVCRKL 37 (207)
T ss_pred EEEEEEecC------C-CEEEEEECCCCCHHHHHHHHHHHh
Confidence 556776665 3 467888888899999999999876
No 178
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.23 E-value=55 Score=30.04 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=22.8
Q ss_pred ceeEEEECCeecCCCCccCCCCEEEE
Q 034057 73 GCMVLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 73 ~~~~vaVNg~~v~~d~~L~dGDeVai 98 (105)
+..-++|||+.|..-+.|+.||.|.+
T Consensus 521 e~aetyVNGk~v~ep~qL~~GdRiil 546 (1221)
T KOG0245|consen 521 EDAETYVNGKLVTEPTQLRSGDRIIL 546 (1221)
T ss_pred CccceeEccEEcCCcceeccCCEEEE
Confidence 45578999999999999999999975
No 179
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=27.65 E-value=90 Score=23.08 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=17.7
Q ss_pred eEEEECCe---ecCCCCccCCCCEE--EEEcC
Q 034057 75 MVLALNEE---YTNASVIVNEKDEL--AIIPP 101 (105)
Q Consensus 75 ~~vaVNg~---~v~~d~~L~dGDeV--aiiPP 101 (105)
+.+-+.++ .|..|..+++||.+ |++||
T Consensus 142 ~vvn~G~r~~tVVTN~~~vreg~~vaVAlLPP 173 (219)
T COG2517 142 TVVNIGGRAVTVVTNDLDVREGDRVAVALLPP 173 (219)
T ss_pred EEEecCCeEEEEEecccccccCCEEEEEecCh
Confidence 34444455 24578889999975 56787
No 180
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=27.09 E-value=50 Score=17.76 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHhCCCchh
Q 034057 53 TTQDCLNKLIARFPNLEE 70 (105)
Q Consensus 53 tv~dLl~~L~~~~p~l~~ 70 (105)
.+..++..+.++||+++.
T Consensus 14 qL~~lL~~l~~~HPei~~ 31 (38)
T PF14483_consen 14 QLQSLLQSLCERHPEIQQ 31 (38)
T ss_dssp HHHHHHHHHHHHSTHHHH
T ss_pred HHHHHHHHHHHhChhHHH
Confidence 567889999999998764
No 181
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=26.91 E-value=66 Score=20.29 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCCch
Q 034057 51 GSTTQDCLNKLIARFPNLE 69 (105)
Q Consensus 51 ~~tv~dLl~~L~~~~p~l~ 69 (105)
..|++.|+++|...||++.
T Consensus 29 ~at~E~l~~~L~~~yp~i~ 47 (80)
T PF10264_consen 29 PATQETLREHLRKHYPGIA 47 (80)
T ss_pred cchHHHHHHHHHHhCCCCC
Confidence 4689999999999999874
No 182
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=26.58 E-value=1.6e+02 Score=18.09 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHhC----CCchhhcceeEEEE--CCeecCCCC----ccCCCCEEEEE
Q 034057 49 SCGSTTQDCLNKLIARF----PNLEEIRGCMVLAL--NEEYTNASV----IVNEKDELAII 99 (105)
Q Consensus 49 ~~~~tv~dLl~~L~~~~----p~l~~~~~~~~vaV--Ng~~v~~d~----~L~dGDeVaii 99 (105)
+...|+.+|.+.+.++| |...++. +.=.- +|...++|. .+..||.|.++
T Consensus 10 ~~~~tl~~L~~eI~~~f~kLYP~~~~~~--I~~LQD~~~cDLD~d~~V~DVf~~~~~vrvi 68 (73)
T PF10407_consen 10 DPNNTLSQLKEEIEERFKKLYPNEPELE--ILSLQDSDGCDLDPDFLVKDVFNSNNVVRVI 68 (73)
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCCCce--EEEeecCCCCCCCcccEeeeeeccCCEEEEE
Confidence 44679999888887764 6554321 11122 344455553 55678877665
No 183
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.48 E-value=1.6e+02 Score=21.52 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=31.1
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEE---ECCee----cCCCCccCCCCEEEE
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLA---LNEEY----TNASVIVNEKDELAI 98 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~va---VNg~~----v~~d~~L~dGDeVai 98 (105)
-.+++..++|+.+++..-+---+. ++ ...+.+. -||.. ++....|++||.|.+
T Consensus 175 g~~~~~~~~tl~~al~~aGG~~~~-a~-~~~v~i~R~~~~g~~~~~~~~~~~~l~~gDii~V 234 (239)
T TIGR03028 175 GAYRLERNMTVMQALAQGGGLTPR-GT-ERGIRVMRRDDKGAVEEVSGELGDLVQPDDVIYV 234 (239)
T ss_pred eEEEeCCCCCHHHHHHhcCCCCcc-cC-cceEEEEEECCCCcEEEEecCCCcccCCCCEEEE
Confidence 467777889999988765433332 11 1223332 24432 234567999999876
No 184
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=25.81 E-value=1.4e+02 Score=21.93 Aligned_cols=44 Identities=25% Similarity=0.260 Sum_probs=33.7
Q ss_pred eEEEEEecHHhHhhcCCCceEEE--eCCCCCHHHHHHHHHHhCCCc
Q 034057 25 IQIKVLFFARARDLTGLTDMPLE--VSCGSTTQDCLNKLIARFPNL 68 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~ve--v~~~~tv~dLl~~L~~~~p~l 68 (105)
-.|++--+-.+.+++|+.-..++ ++.|.|+..|+..+.+..|..
T Consensus 110 g~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~ 155 (216)
T KOG3367|consen 110 GDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSM 155 (216)
T ss_pred CCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccc
Confidence 34566667778899998777666 456789999999998877753
No 185
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=1.4e+02 Score=18.08 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=24.5
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
|.|+|++. +| ++.+++++..-++..+.+.+.++.
T Consensus 1 m~iKvktL------t~-KeIeidIep~DkverIKErvEEke 34 (70)
T KOG0005|consen 1 MLIKVKTL------TG-KEIEIDIEPTDKVERIKERVEEKE 34 (70)
T ss_pred CeeeEeee------cc-ceEEEeeCcchHHHHHHHHhhhhc
Confidence 55676654 35 478888877778888888887764
No 186
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=25.46 E-value=1.1e+02 Score=19.70 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=24.3
Q ss_pred hcCCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 38 LTGLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 38 ~~g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
+.|.....+.++.+++..+|..+|.+.+.
T Consensus 19 Y~GG~tr~i~V~r~~s~~el~~kl~~~~~ 47 (97)
T cd06410 19 YVGGETRIVSVDRSISFKELVSKLSELFG 47 (97)
T ss_pred EcCCceEEEEEcCCCCHHHHHHHHHHHhC
Confidence 44667788899999999999999998864
No 187
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=25.43 E-value=67 Score=24.48 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=21.9
Q ss_pred eeEEEECCeecCCC--CccCCCCEEEEEcCCCC
Q 034057 74 CMVLALNEEYTNAS--VIVNEKDELAIIPPISG 104 (105)
Q Consensus 74 ~~~vaVNg~~v~~d--~~L~dGDeVaiiPPvsG 104 (105)
.+-+.+||+.++.. ..++.||++.|-+|-.|
T Consensus 54 ~~~~~lng~~~~~~~~~~v~~Gd~L~~~~~~~G 86 (271)
T PF02626_consen 54 DFEATLNGKPVPMWQPFLVKAGDVLKFGPPRSG 86 (271)
T ss_dssp CEEEEETTEEE-TTSEEEE-TT-EEEEEEESSE
T ss_pred CCceEECCEEccCCEEEEECCCCEEEecCCCCc
Confidence 45677899998754 57999999999888655
No 188
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=25.36 E-value=1.9e+02 Score=23.71 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=41.1
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCC---HHHHHHHHHHhC-CCchhhcceeEEEECCeecC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGST---TQDCLNKLIARF-PNLEEIRGCMVLALNEEYTN 85 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~t---v~dLl~~L~~~~-p~l~~~~~~~~vaVNg~~v~ 85 (105)
.+-+|+|+||....+ +-.....+.+|.+.+ +..++..|.+.. |..+. ..+=++|.|+++.
T Consensus 4 ~~~qvqvrF~Tk~e~-~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~--~pFDFLi~gelLR 67 (423)
T KOG0313|consen 4 NSGQVQVRFFTKNED-YAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKP--VPFDFLIKGELLR 67 (423)
T ss_pred CcceEEEEEEecccc-cCCCCcceeccCcceEccHHHHHHHHHhccCCcCCC--CcceEEEcceeee
Confidence 346799999999988 555677888887754 466676665544 33332 2356788888864
No 189
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=25.20 E-value=75 Score=26.04 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.9
Q ss_pred CCccCCCCEEEEEcCC
Q 034057 87 SVIVNEKDELAIIPPI 102 (105)
Q Consensus 87 d~~L~dGDeVaiiPPv 102 (105)
-..+.+||||.++-|.
T Consensus 111 ~~l~~~GDeVii~eP~ 126 (420)
T KOG0257|consen 111 LGLLNPGDEVIVFEPF 126 (420)
T ss_pred HHHcCCCCEEEEecCc
Confidence 4679999999999885
No 190
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=24.65 E-value=40 Score=19.48 Aligned_cols=16 Identities=44% Similarity=0.617 Sum_probs=10.1
Q ss_pred ccCCCCEEEEEcCCCC
Q 034057 89 IVNEKDELAIIPPISG 104 (105)
Q Consensus 89 ~L~dGDeVaiiPPvsG 104 (105)
.+++|..-.|=||-+|
T Consensus 14 iV~~G~v~~i~pP~sG 29 (50)
T PF13128_consen 14 IVKDGEVTFIEPPESG 29 (50)
T ss_pred EEECCeEEEcCCCCCC
Confidence 4567755555577776
No 191
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=23.51 E-value=2.1e+02 Score=20.61 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=31.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS 87 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d 87 (105)
....+-++.|.|...+.+.|...+ .+ +|.....+.+|.+.|+.|
T Consensus 23 ~~~~l~lsGGstp~~~y~~L~~~~-~i-~w~~v~~f~~DEr~Vp~~ 66 (219)
T cd01400 23 GRFSLALSGGSTPKPLYELLAAAP-AL-DWSKVHVFLGDERCVPPD 66 (219)
T ss_pred CeEEEEECCCccHHHHHHHhcccc-CC-CCceEEEEEeeccccCCC
Confidence 456788999999999999999876 22 233455677788777643
No 192
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=23.02 E-value=2e+02 Score=18.79 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=28.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS 87 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d 87 (105)
..+=+|...|+.+++..+..+-. +.. ...+.++||+..++.+
T Consensus 35 ~KfLvp~~~tv~qf~~~ir~rl~-l~~-~~alfl~Vn~~lp~~s 76 (104)
T PF02991_consen 35 KKFLVPKDLTVGQFVYIIRKRLQ-LSP-EQALFLFVNNTLPSTS 76 (104)
T ss_dssp SEEEEETTSBHHHHHHHHHHHTT---T-TS-EEEEBTTBESSTT
T ss_pred cEEEEcCCCchhhHHHHhhhhhc-CCC-CceEEEEEcCcccchh
Confidence 34557889999999999987753 221 2457788999655443
No 193
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=23.02 E-value=1.5e+02 Score=19.57 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=29.5
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS 87 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d 87 (105)
..+-+|...|+.+++..|..+.. +.. .+.+.++||+...+.+
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~-l~~-~~slfl~Vn~~~p~~~ 84 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQ-LRP-EKALFLFVNNSLPPTS 84 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhC-CCc-cceEEEEECCccCCch
Confidence 45668999999999999977642 221 2567899999543443
No 194
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=22.76 E-value=1.2e+02 Score=22.05 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=21.7
Q ss_pred EEEEecHH-hHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 27 IKVLFFAR-ARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 27 V~V~~fg~-lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
++|.+.+. +.+. ...++-+|...||+||++.+..+.+
T Consensus 21 ~kv~w~~~~~~~~---~~~~~~vpk~~tV~Dll~~l~~k~~ 58 (213)
T PF14533_consen 21 FKVTWLNDGLKEE---QEYELLVPKTGTVSDLLEELQKKVG 58 (213)
T ss_dssp EEEEEE-TTS-EE----EEEE--BTT-BHHHHHHHHHTT--
T ss_pred EEEEEECCCCcce---eEEEEEECCCCCHHHHHHHHHHHcC
Confidence 67777643 2221 3456777888999999999998763
No 195
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=22.76 E-value=1e+02 Score=23.56 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=23.9
Q ss_pred eeEEEECCeecCCC--CccCCCCEEEEEcCCCC
Q 034057 74 CMVLALNEEYTNAS--VIVNEKDELAIIPPISG 104 (105)
Q Consensus 74 ~~~vaVNg~~v~~d--~~L~dGDeVaiiPPvsG 104 (105)
.+.+.+|++.+... ..+++||++.|=+|..|
T Consensus 54 ~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~~G 86 (280)
T smart00797 54 DFPATLDGQPVPPWKPFLVRAGQVLSLGAPKAG 86 (280)
T ss_pred CCeeeECCEEcCCCeEEEECCCCEEEeCCCCCc
Confidence 35677888887642 57999999999888765
No 196
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=22.40 E-value=72 Score=23.27 Aligned_cols=64 Identities=8% Similarity=0.029 Sum_probs=32.3
Q ss_pred EEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-----C---CCccCCCCEEEE
Q 034057 28 KVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-----A---SVIVNEKDELAI 98 (105)
Q Consensus 28 ~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-----~---d~~L~dGDeVai 98 (105)
+|.++|.+. ....+....+.++.+-+.... +-.-++....+.|.=||+... | .+.+.+||.|.+
T Consensus 130 ~V~V~G~V~-----~p~~~~~~~g~sv~dYl~~~g--~~~~Ad~s~v~VI~pdG~v~~~~~a~Wn~~~~~l~PG~~I~V 201 (229)
T PF06251_consen 130 TVSVLGAVQ-----NPTSVPYQPGLSVSDYLDSAG--PTSGADKSRVYVIQPDGSVQKVPVAYWNNQHQELAPGATIYV 201 (229)
T ss_dssp EEEEEESBT-----T-EEEE--TT--HHHHHTTS---B-TTB-SSEEEEE-TTS-EEEEE-STTT--EEE--TT-EEEE
T ss_pred EEEEEEccC-----CcceeeccCCCCHHHHHHhCC--CccCCCcccEEEEeCCCcEEEcceehhccCCCCCCCCCEEEE
Confidence 577777763 245666678899999887653 212222233456666888752 3 367999998865
No 197
>PLN00189 40S ribosomal protein S9; Provisional
Probab=22.10 E-value=1.1e+02 Score=22.49 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=20.3
Q ss_pred cceeEEEECCeecC-CCCccCCCCEEEE
Q 034057 72 RGCMVLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 72 ~~~~~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
..+=.|.||++.|. +...++.|+|+.|
T Consensus 131 I~hgHI~V~~~~V~~Ps~~V~~~~e~~I 158 (194)
T PLN00189 131 IRQRHIRVGKQIVNVPSFMVRVDSQKHI 158 (194)
T ss_pred eeCCCEeECCEEEecCcEEEecCCEEEE
Confidence 44557899999986 6888888866644
No 198
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=21.82 E-value=32 Score=26.03 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=24.4
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCe
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEE 82 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~ 82 (105)
....++.+..+.+++.++|...||.+ .+.||.-
T Consensus 54 t~v~Dv~d~~~~~~lvewLkk~~P~l-------NvliNNA 86 (245)
T COG3967 54 TEVCDVADRDSRRELVEWLKKEYPNL-------NVLINNA 86 (245)
T ss_pred eeeecccchhhHHHHHHHHHhhCCch-------heeeecc
Confidence 34556666678899999999999975 4566653
No 199
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=21.39 E-value=1.9e+02 Score=19.27 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCC-EEEEEcCCCC
Q 034057 52 STTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKD-ELAIIPPISG 104 (105)
Q Consensus 52 ~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGD-eVaiiPPvsG 104 (105)
.+..++++.|.+.++... ..........-+.+..+. +|.|+.|+|.
T Consensus 23 ~~~~ei~~~l~~~~~~~~-------~~~~~~~pa~~y~~~g~~g~vG~I~~~s~ 69 (128)
T PF06463_consen 23 VPAQEILERLEERYELLP-------SEKRPNGPARYYRIPGGKGRVGFISPVSN 69 (128)
T ss_dssp --HHHHHHHHHHHS-EEE-------E--SST-SSEEEEETTT--EEEEE-TTTS
T ss_pred cCHHHHHHHHHHhCCccc-------cccccCCcceEEEECCCCcEEEEEeCCCC
Confidence 688999999998886321 111111111235666666 8999999873
No 200
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=21.26 E-value=87 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=17.1
Q ss_pred EEEEC--CeecCC--CCccCCCCEEEEEc
Q 034057 76 VLALN--EEYTNA--SVIVNEKDELAIIP 100 (105)
Q Consensus 76 ~vaVN--g~~v~~--d~~L~dGDeVaiiP 100 (105)
-++|| +..+.. ...|++||+|.|=+
T Consensus 68 GT~VN~sg~~l~~~~~~~L~~GD~I~iG~ 96 (396)
T TIGR03354 68 GVFLNGSGSPLGRGNPVRLEQGDRLRLGD 96 (396)
T ss_pred CeEECCCCCCCCCCCceEcCCCCEEEECC
Confidence 35566 555544 47899999998743
No 201
>PRK04980 hypothetical protein; Provisional
Probab=20.91 E-value=1.1e+02 Score=20.14 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHhCCCch
Q 034057 50 CGSTTQDCLNKLIARFPNLE 69 (105)
Q Consensus 50 ~~~tv~dLl~~L~~~~p~l~ 69 (105)
+|.|+.+|.+.|.+.||+..
T Consensus 73 Eg~sL~elk~~i~~iYp~~~ 92 (102)
T PRK04980 73 ENMTLPELKQVIAEIYPNLD 92 (102)
T ss_pred hCCCHHHHHHHHHHHCCCCc
Confidence 46689999999999999854
No 202
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=20.76 E-value=1.1e+02 Score=22.95 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=24.5
Q ss_pred eeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 74 CMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 74 ~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
.+.+..+.....+|..+..|+.|+|+-|-+-|
T Consensus 6 ~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaG 37 (231)
T COG3840 6 DVRFSYGHLPMRFDLTVPAGEIVAILGPSGAG 37 (231)
T ss_pred ceEEeeCcceEEEEEeecCCcEEEEECCCCcc
Confidence 45555566666678999999999999887655
No 203
>PF01561 Hanta_G2: Hantavirus glycoprotein G2; InterPro: IPR002532 The medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [], G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein.; GO: 0030683 evasion by virus of host immune response, 0044423 virion part
Probab=20.73 E-value=73 Score=26.34 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=16.3
Q ss_pred CccCCCCEEEEEcCCCCC
Q 034057 88 VIVNEKDELAIIPPISGG 105 (105)
Q Consensus 88 ~~L~dGDeVaiiPPvsGG 105 (105)
..+++||++.|+.|+-||
T Consensus 188 sk~~~~dtllflgple~g 205 (485)
T PF01561_consen 188 SKFQPGDTLLFLGPLEGG 205 (485)
T ss_pred eeeCCCcEEEEecccccC
Confidence 468999999999999887
No 204
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.56 E-value=81 Score=17.10 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=8.3
Q ss_pred ccCCCCEEEEEc
Q 034057 89 IVNEKDELAIIP 100 (105)
Q Consensus 89 ~L~dGDeVaiiP 100 (105)
-|++||+|.|.+
T Consensus 20 ~l~~Gd~v~i~~ 31 (47)
T PF04014_consen 20 GLKPGDEVEIEV 31 (47)
T ss_dssp TSSTTTEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 467777777763
No 205
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=20.56 E-value=1.7e+02 Score=17.52 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=25.9
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE--CCeecCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL--NEEYTNASV 88 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV--Ng~~v~~d~ 88 (105)
...+.+..|.|++|++..+.+++. |. ...+.+.. ....+++|+
T Consensus 12 ~t~V~vrpg~ti~d~L~~~~~kr~-L~--~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 12 RTVVQVRPGMTIRDALSKACKKRG-LN--PECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHTTT-----CCCEEEEEEEEEEEE-TTS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcC-CC--HHHEEEEEcCCCccccCCC
Confidence 456778889999999999998873 21 12333433 345566654
No 206
>PF03831 PhnA: PhnA protein; InterPro: IPR013988 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the C-terminal domain of PhnA.; PDB: 2AKK_A 2AKL_A.
Probab=20.21 E-value=50 Score=19.50 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=7.9
Q ss_pred CccCCCCEEEEE
Q 034057 88 VIVNEKDELAII 99 (105)
Q Consensus 88 ~~L~dGDeVaii 99 (105)
..|++||.|.++
T Consensus 8 n~L~dGDsV~~i 19 (56)
T PF03831_consen 8 NELQDGDSVTLI 19 (56)
T ss_dssp -B--TTEEEEES
T ss_pred CCccCCCEEEEE
Confidence 579999999886
No 207
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=20.17 E-value=2.9e+02 Score=18.64 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=35.7
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN 85 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~ 85 (105)
+-|-|.+.+. +++-.-....+=+|+..|+++++..+..+.. |.. .+.+.++||+....
T Consensus 29 iPVIvEk~~~-~~lp~lDK~KyLVP~dltvgqfi~iIRkRiq-L~~-~kA~flfVn~~~p~ 86 (116)
T KOG1654|consen 29 IPVIVEKAGK-SQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQ-LSP-EKAFFLFVNNTSPP 86 (116)
T ss_pred CcEEEEeccc-ccCcccccceeeccccccHHHHHHHHHHHhc-cCh-hHeEEEEEcCcCCc
Confidence 3455553332 2222223345668889999999998887652 211 24578999998754
No 208
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=20.02 E-value=83 Score=21.03 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=11.7
Q ss_pred CCccCCCCEEEEEc
Q 034057 87 SVIVNEKDELAIIP 100 (105)
Q Consensus 87 d~~L~dGDeVaiiP 100 (105)
-..|++||.|.++-
T Consensus 48 G~~L~dGDsV~liK 61 (109)
T TIGR00686 48 GNLLANGDSVILIK 61 (109)
T ss_pred CCCccCCCEEEEEe
Confidence 37899999999873
Done!