Query 034057
Match_columns 105
No_of_seqs 183 out of 1046
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjk_A Molybdopterin convertin 99.9 5.6E-27 1.9E-31 151.9 10.2 83 23-105 8-98 (98)
2 3po0_A Small archaeal modifier 99.9 4.6E-26 1.6E-30 144.7 10.6 80 26-105 2-89 (89)
3 1fm0_D Molybdopterin convertin 99.9 4.4E-25 1.5E-29 137.6 8.1 79 26-105 1-81 (81)
4 2qjl_A URM1, ubiquitin-related 99.9 8E-25 2.8E-29 142.1 9.5 81 25-105 2-99 (99)
5 2q5w_D Molybdopterin convertin 99.9 8.4E-25 2.9E-29 135.3 7.1 77 27-105 1-77 (77)
6 3dwg_C 9.5 kDa culture filtrat 99.9 2.4E-24 8.2E-29 137.9 8.5 79 25-105 1-93 (93)
7 2l52_A Methanosarcina acetivor 99.9 2.6E-23 8.8E-28 135.1 9.5 80 23-105 2-99 (99)
8 3rpf_C Molybdopterin convertin 99.9 1E-23 3.6E-28 130.3 6.7 73 25-105 1-74 (74)
9 2g1e_A Hypothetical protein TA 99.9 1.1E-22 3.8E-27 128.7 8.0 77 27-105 2-90 (90)
10 1wgk_A Riken cDNA 2900073H19 p 99.9 2.3E-21 7.9E-26 129.3 8.6 83 23-105 10-108 (114)
11 2k9x_A Tburm1, uncharacterized 99.8 2E-19 6.7E-24 119.3 5.5 81 24-105 4-102 (110)
12 1v8c_A MOAD related protein; r 99.8 4.4E-19 1.5E-23 125.1 7.6 75 28-105 2-87 (168)
13 1rws_A Hypothetical protein PF 99.7 2.1E-18 7.1E-23 107.3 -0.2 68 31-105 10-77 (77)
14 1ryj_A Unknown; beta/alpha pro 99.5 1.2E-14 4.2E-19 88.6 6.3 56 43-105 15-70 (70)
15 1f0z_A THis protein; ubiquitin 99.5 1.3E-14 4.5E-19 87.4 4.2 55 44-105 8-66 (66)
16 2cu3_A Unknown function protei 99.5 4.1E-14 1.4E-18 84.8 4.7 54 44-105 7-64 (64)
17 2l32_A Small archaeal modifier 99.4 6.4E-14 2.2E-18 86.7 4.2 66 25-105 1-66 (74)
18 1tyg_B YJBS; alpha beta barrel 99.4 1.1E-13 3.9E-18 88.1 4.5 56 43-105 27-87 (87)
19 2k5p_A THis protein, thiamine- 99.2 9.2E-12 3.1E-16 77.6 3.9 56 44-105 8-69 (78)
20 2kl0_A Putative thiamin biosyn 99.2 2E-11 6.7E-16 75.2 5.1 54 44-105 8-65 (73)
21 2hj1_A Hypothetical protein; s 99.1 1E-10 3.4E-15 75.8 5.8 76 22-103 10-87 (97)
22 2kmm_A Guanosine-3',5'-BIS(dip 98.5 1.5E-07 5.3E-12 56.4 5.6 56 44-104 11-66 (73)
23 3hvz_A Uncharacterized protein 98.0 1E-05 3.5E-10 50.1 5.6 54 43-101 15-68 (78)
24 3mtn_B UBA80, ubcep1, ubiquiti 97.7 0.00036 1.2E-08 41.9 8.7 73 23-105 2-79 (85)
25 3n3k_B Ubiquitin; hydrolase, p 97.7 0.00048 1.7E-08 41.4 8.7 73 23-105 2-79 (85)
26 3a9j_A Ubiquitin; protein comp 97.6 0.00079 2.7E-08 39.4 8.7 71 25-105 1-76 (76)
27 3dbh_I NEDD8; cell cycle, acti 97.6 0.00082 2.8E-08 40.7 8.6 75 21-105 9-88 (88)
28 1ndd_A NEDD8, protein (ubiquit 97.5 0.0012 4E-08 38.6 8.2 71 25-105 1-76 (76)
29 1wh3_A 59 kDa 2'-5'-oligoadeny 97.4 0.0015 5E-08 39.6 8.4 74 22-105 5-83 (87)
30 4hcn_B Polyubiquitin, ubiquiti 97.4 0.0013 4.4E-08 41.3 7.9 77 19-105 17-98 (98)
31 2ojr_A Ubiquitin; lanthide-bin 97.3 0.0054 1.8E-07 39.3 10.5 73 23-105 34-111 (111)
32 1yx5_B Ubiquitin; proteasome, 97.2 0.0057 1.9E-07 38.0 9.4 71 25-105 1-76 (98)
33 3k9o_B Ubiquitin, UBB+1; E2-25 97.2 0.004 1.4E-07 38.4 8.5 71 25-105 2-77 (96)
34 3vdz_A Ubiquitin-40S ribosomal 97.1 0.0061 2.1E-07 39.1 9.0 73 23-105 34-111 (111)
35 1wy8_A NP95-like ring finger p 97.1 0.0095 3.3E-07 36.1 9.5 74 23-105 6-85 (89)
36 2l7r_A Ubiquitin-like protein 97.1 0.0043 1.5E-07 38.5 7.9 71 23-105 18-93 (93)
37 1wwt_A Threonyl-tRNA synthetas 97.0 0.00086 2.9E-08 41.3 4.4 52 45-101 21-73 (88)
38 4fbj_B NEDD8; effector-HOST ta 97.0 0.0069 2.4E-07 37.1 8.5 71 25-105 1-76 (88)
39 1sif_A Ubiquitin; hydrophobic 97.0 0.0061 2.1E-07 37.4 8.0 71 25-105 10-85 (88)
40 3phx_B Ubiquitin-like protein 96.8 0.014 4.9E-07 34.5 8.5 72 23-104 3-79 (79)
41 2hj8_A Interferon-induced 17 k 96.8 0.0077 2.6E-07 36.8 7.4 72 24-105 4-80 (88)
42 1wx8_A Riken cDNA 4931431F19; 96.7 0.011 3.8E-07 36.5 7.9 74 21-105 14-92 (96)
43 1wyw_B Ubiquitin-like protein 96.7 0.011 3.9E-07 36.8 7.5 75 21-105 18-97 (97)
44 2uyz_B Small ubiquitin-related 96.6 0.0094 3.2E-07 35.3 6.8 72 24-105 3-79 (79)
45 1v5o_A 1700011N24RIK protein; 96.6 0.029 9.9E-07 35.2 9.4 76 24-105 7-88 (102)
46 1wgd_A Homocysteine-responsive 96.6 0.026 8.9E-07 34.7 8.8 77 22-105 5-89 (93)
47 1j8c_A Ubiquitin-like protein 96.6 0.033 1.1E-06 36.5 9.7 80 15-105 23-107 (125)
48 1wx7_A Ubiquilin 3; ubiquitin- 96.5 0.023 8E-07 35.8 8.4 78 17-105 10-92 (106)
49 2wyq_A HHR23A, UV excision rep 96.4 0.06 2.1E-06 32.0 9.6 69 22-99 3-78 (85)
50 2d07_B Ubiquitin-like protein 96.4 0.032 1.1E-06 34.8 8.4 74 22-105 15-93 (93)
51 2dzi_A Ubiquitin-like protein 96.4 0.032 1.1E-06 32.9 8.0 69 23-101 6-79 (81)
52 2io1_B Small ubiquitin-related 96.4 0.023 7.8E-07 35.7 7.7 74 22-105 5-83 (94)
53 2io0_B Small ubiquitin-related 96.4 0.037 1.3E-06 34.5 8.6 72 24-105 5-81 (91)
54 1yqb_A Ubiquilin 3; structural 96.3 0.03 1E-06 35.2 8.1 74 21-105 19-97 (100)
55 3v6c_B Ubiquitin; structural g 96.3 0.037 1.3E-06 33.7 8.3 70 22-101 15-89 (91)
56 2eki_A DRG 1, developmentally- 96.3 0.0079 2.7E-07 38.3 5.1 52 44-101 27-87 (93)
57 1v2y_A 3300001G02RIK protein; 96.3 0.012 4.1E-07 37.9 6.0 76 22-104 5-98 (105)
58 2kan_A Uncharacterized protein 96.3 0.067 2.3E-06 33.2 9.3 77 18-105 9-91 (94)
59 3u30_A Ubiquitin, linear DI-ub 96.2 0.041 1.4E-06 37.3 8.9 76 20-105 16-96 (172)
60 2bwf_A Ubiquitin-like protein 96.2 0.044 1.5E-06 31.9 8.0 67 23-100 3-74 (77)
61 1wia_A Hypothetical ubiquitin- 96.1 0.033 1.1E-06 34.2 7.3 67 21-100 4-76 (95)
62 4a20_A Ubiquitin-like protein 96.1 0.058 2E-06 34.1 8.5 71 20-99 15-93 (98)
63 4dwf_A HLA-B-associated transc 96.0 0.063 2.2E-06 32.4 8.1 69 22-101 3-76 (90)
64 1we6_A Splicing factor, putati 95.9 0.071 2.4E-06 33.8 8.4 77 22-105 25-107 (111)
65 1ttn_A DC-UBP, dendritic cell- 95.9 0.059 2E-06 34.0 7.8 73 18-100 17-94 (106)
66 3l0w_B Monoubiquitinated proli 95.8 0.06 2E-06 37.0 8.3 71 25-105 1-76 (169)
67 1uel_A HHR23B, UV excision rep 95.8 0.087 3E-06 32.4 8.4 66 25-99 1-73 (95)
68 3m62_B UV excision repair prot 95.8 0.056 1.9E-06 34.2 7.5 65 25-99 2-71 (106)
69 2eke_C Ubiquitin-like protein 95.8 0.11 3.7E-06 33.4 8.9 74 21-105 28-106 (106)
70 3b08_A Polyubiquitin-C, ubiqui 95.8 0.14 4.8E-06 33.3 9.6 71 25-105 77-152 (152)
71 2k8h_A Small ubiquitin protein 95.7 0.057 1.9E-06 35.0 7.4 73 23-105 25-102 (110)
72 3rt3_B Ubiquitin-like protein 95.7 0.098 3.4E-06 34.8 8.6 74 22-105 79-157 (159)
73 3q3f_A Ribonuclease/ubiquitin 95.6 0.061 2.1E-06 37.9 7.8 71 25-105 106-181 (189)
74 3b08_A Polyubiquitin-C, ubiqui 95.6 0.12 4E-06 33.7 8.7 71 25-105 1-76 (152)
75 2kk8_A Uncharacterized protein 95.5 0.084 2.9E-06 32.0 7.3 67 23-99 9-81 (84)
76 2klc_A Ubiquilin-1; ubiquitin- 95.4 0.25 8.4E-06 30.9 9.6 71 22-103 23-98 (101)
77 2faz_A Ubiquitin-like containi 95.3 0.2 6.9E-06 29.2 9.5 69 24-101 2-76 (78)
78 1tke_A Threonyl-tRNA synthetas 95.2 0.015 5.2E-07 41.4 3.6 53 44-101 10-62 (224)
79 1wz0_A Ubiquitin-like protein 95.1 0.13 4.6E-06 32.7 7.5 73 23-105 23-100 (104)
80 2daf_A FLJ35834 protein; hypot 95.0 0.23 7.9E-06 32.7 8.5 77 13-98 4-85 (118)
81 4eew_A Large proline-rich prot 94.9 0.19 6.6E-06 30.1 7.6 69 20-99 13-86 (88)
82 1we7_A SF3A1 protein; structur 94.8 0.14 4.8E-06 32.7 7.0 79 23-105 24-111 (115)
83 3plu_A Ubiquitin-like modifier 94.8 0.3 1E-05 30.8 8.3 75 15-99 12-91 (93)
84 3a4r_A Nfatc2-interacting prot 94.6 0.26 8.8E-06 29.6 7.5 68 23-99 6-78 (79)
85 2gow_A HCG-1 protein, ubiquiti 94.5 0.23 8E-06 32.7 7.7 68 22-96 15-92 (125)
86 1x1m_A Ubiquitin-like protein 94.5 0.47 1.6E-05 29.8 8.9 72 22-99 10-97 (107)
87 2kdi_A Ubiquitin, vacuolar pro 94.3 0.36 1.2E-05 30.8 8.1 71 25-105 10-85 (114)
88 1v5t_A 8430435I17RIK protein; 94.3 0.17 5.7E-06 30.9 6.2 67 23-100 6-81 (90)
89 1wgh_A Ubiquitin-like 3, HCG-1 94.2 0.58 2E-05 30.4 9.0 69 23-98 15-93 (116)
90 3goe_A DNA repair protein RAD6 94.2 0.22 7.5E-06 30.8 6.4 56 42-99 20-80 (82)
91 1wgg_A Ubiquitin carboxyl-term 93.9 0.27 9.1E-06 30.5 6.7 66 23-99 6-76 (96)
92 1uh6_A Ubiquitin-like 5; beta- 93.8 0.46 1.6E-05 30.2 7.7 77 13-99 16-98 (100)
93 1wm3_A Ubiquitin-like protein 93.7 0.5 1.7E-05 27.6 7.4 65 25-99 2-71 (72)
94 3b1l_X E3 ubiquitin-protein li 92.8 0.012 4E-07 34.5 0.0 70 25-104 1-75 (76)
95 2bps_A YUKD protein; ubiquitin 93.6 0.11 3.6E-06 32.1 4.3 71 23-99 3-81 (81)
96 3u5e_m 60S ribosomal protein L 93.5 0.013 4.5E-07 38.4 0.0 71 25-105 1-76 (128)
97 2kdb_A Homocysteine-responsive 92.9 0.23 7.9E-06 31.2 5.1 71 21-98 20-98 (99)
98 3u5c_f 40S ribosomal protein S 92.8 0.019 6.6E-07 39.1 0.0 71 25-105 1-76 (152)
99 1v86_A DNA segment, CHR 7, way 92.8 0.24 8.1E-06 30.6 5.1 69 20-99 13-85 (95)
100 1wxv_A BAG-family molecular ch 92.6 0.98 3.4E-05 27.2 7.9 68 22-100 5-83 (92)
101 3m63_B Ubiquitin domain-contai 92.5 0.18 6.3E-06 31.5 4.3 66 23-99 27-97 (101)
102 3rt3_B Ubiquitin-like protein 92.4 1.2 4.2E-05 29.3 8.6 68 24-101 2-76 (159)
103 3u30_A Ubiquitin, linear DI-ub 92.3 0.73 2.5E-05 31.0 7.5 61 42-105 107-172 (172)
104 2dzj_A Synaptic glycoprotein S 92.3 0.46 1.6E-05 29.0 5.9 69 24-98 10-85 (88)
105 2xzm_9 RPS31E; ribosome, trans 92.2 0.026 8.8E-07 40.0 0.0 71 25-105 1-71 (189)
106 3kyd_D Small ubiquitin-related 92.0 1.4 4.9E-05 28.6 8.2 74 19-102 35-113 (115)
107 2kd0_A LRR repeats and ubiquit 91.4 0.88 3E-05 27.3 6.4 56 42-100 22-82 (85)
108 1oqy_A HHR23A, UV excision rep 91.1 0.7 2.4E-05 35.6 7.0 67 22-97 5-78 (368)
109 1wju_A NEDD8 ultimate buster-1 90.8 2 6.9E-05 27.1 8.7 69 25-99 16-89 (100)
110 1se9_A Ubiquitin family; ubiqu 90.7 2.4 8.3E-05 27.9 9.6 72 17-94 9-89 (126)
111 3tix_A Ubiquitin-like protein 90.4 1.5 5E-05 31.4 7.5 63 39-105 65-132 (207)
112 2jxx_A Nfatc2-interacting prot 90.4 2.2 7.5E-05 26.8 7.7 54 43-99 38-96 (97)
113 2k6p_A Uncharacterized protein 90.2 0.25 8.5E-06 30.2 3.1 25 76-100 27-51 (92)
114 1p9k_A ORF, hypothetical prote 89.6 0.22 7.6E-06 29.7 2.5 53 46-98 13-70 (79)
115 4ejq_A Kinesin-like protein KI 89.5 0.27 9.1E-06 33.2 3.1 24 75-98 110-133 (154)
116 3pge_A SUMO-modified prolifera 89.2 3 0.0001 29.5 8.5 63 39-105 37-104 (200)
117 3fm8_A Kinesin-like protein KI 89.0 0.3 1E-05 32.0 2.9 24 75-98 90-113 (124)
118 3ai5_A Yeast enhanced green fl 88.8 1.8 6.2E-05 32.5 7.5 71 21-101 230-305 (307)
119 1wjn_A Tubulin-folding protein 88.5 2.9 9.8E-05 25.5 8.3 70 25-100 10-91 (97)
120 4egx_A Kinesin-like protein KI 87.7 0.4 1.4E-05 33.4 3.1 25 74-98 139-163 (184)
121 2fnj_B Transcription elongatio 87.2 2.9 9.9E-05 27.2 6.8 62 40-105 10-83 (118)
122 1dm9_A Hypothetical 15.5 KD pr 87.2 0.68 2.3E-05 30.5 3.8 26 75-100 34-59 (133)
123 2lxa_A Ubiquitin-like protein 86.3 1.1 3.8E-05 27.3 4.2 65 25-99 2-75 (87)
124 1oey_A P67-PHOX, neutrophil cy 85.2 2.8 9.4E-05 25.8 5.6 36 22-66 3-38 (83)
125 1wxq_A GTP-binding protein; st 84.4 0.58 2E-05 35.9 2.7 51 44-100 341-394 (397)
126 2kzr_A Ubiquitin thioesterase 83.8 3 0.0001 24.8 5.3 66 25-99 1-75 (86)
127 1wln_A Afadin; beta sandwich, 83.5 0.73 2.5E-05 29.5 2.5 26 74-99 79-104 (120)
128 1c05_A Ribosomal protein S4 de 83.4 1.1 3.8E-05 30.3 3.6 28 75-102 76-104 (159)
129 2pie_A E3 ubiquitin-protein li 82.1 1.5 5E-05 28.7 3.6 29 76-104 76-106 (138)
130 4dbg_A Ranbp-type and C3HC4-ty 81.8 7.7 0.00026 24.6 7.7 55 42-99 37-97 (105)
131 1y8x_B Ubiquitin-activating en 79.9 6.4 0.00022 24.7 5.9 57 43-100 6-83 (98)
132 2bs2_B Quinol-fumarate reducta 79.3 3.8 0.00013 28.8 5.3 58 43-100 25-93 (241)
133 1kf6_B Fumarate reductase iron 78.8 4.1 0.00014 28.7 5.3 69 25-93 6-84 (243)
134 3shq_A UBLCP1; phosphatase, hy 78.7 6.1 0.00021 29.6 6.5 67 22-99 3-77 (320)
135 2vqe_D 30S ribosomal protein S 77.8 2.2 7.5E-05 30.2 3.6 27 74-100 123-150 (209)
136 2wdq_B Succinate dehydrogenase 76.7 4.9 0.00017 28.2 5.2 68 25-92 3-81 (238)
137 4h87_A Kanadaptin; FHA domain 76.4 2.6 9E-05 27.4 3.5 24 75-98 94-119 (130)
138 3kwl_A Uncharacterized protein 75.0 2.1 7.1E-05 34.1 3.1 52 44-100 45-101 (514)
139 1vd2_A Protein kinase C, IOTA 74.5 7.1 0.00024 24.1 4.9 37 22-66 4-40 (89)
140 2bb6_A TCII, TC II, transcobal 73.8 26 0.0009 27.3 9.1 71 23-98 315-409 (414)
141 1v6e_A Cytoskeleton-associated 73.7 12 0.00042 22.5 8.5 70 23-99 6-85 (95)
142 3gqs_A Adenylate cyclase-like 73.1 1.7 5.9E-05 26.9 1.8 23 76-98 70-92 (106)
143 2kkc_A Sequestosome-1; P62, PB 72.3 6.7 0.00023 24.8 4.5 19 52-70 42-60 (102)
144 2csw_A Ubiquitin ligase protei 72.3 2.3 8E-05 28.0 2.4 27 76-102 84-112 (145)
145 1qf6_A THRRS, threonyl-tRNA sy 72.1 2.1 7.2E-05 34.9 2.6 52 45-101 11-62 (642)
146 2jqj_A DNA damage response pro 72.0 2.3 7.9E-05 28.2 2.4 23 77-99 89-112 (151)
147 3po8_A RV0020C protein, putati 71.0 2.2 7.6E-05 26.1 2.0 22 76-98 66-87 (100)
148 3hx1_A SLR1951 protein; P74513 71.0 1.9 6.4E-05 28.1 1.7 23 76-99 83-105 (131)
149 1gxc_A CHK2, CDS1, serine/thre 70.7 2.4 8.3E-05 28.0 2.2 25 77-101 105-131 (149)
150 1r21_A Antigen KI-67; beta san 70.3 1.7 5.8E-05 27.9 1.4 23 76-98 76-98 (128)
151 1nyr_A Threonyl-tRNA synthetas 69.8 1.3 4.4E-05 36.0 0.8 52 45-101 13-64 (645)
152 1lgp_A Cell cycle checkpoint p 69.7 2.7 9.2E-05 26.4 2.2 25 77-101 70-96 (116)
153 3v7o_A Minor nucleoprotein VP3 69.7 1 3.4E-05 32.7 0.2 61 42-105 31-96 (227)
154 2pmv_A Gastric intrinsic facto 69.5 23 0.00077 27.6 7.8 56 44-99 315-395 (399)
155 3u7z_A Putative metal binding 69.5 4.9 0.00017 25.5 3.4 55 43-99 22-96 (101)
156 3vr8_B Iron-sulfur subunit of 69.3 12 0.0004 27.6 5.9 79 21-99 32-124 (282)
157 1ksk_A Ribosomal small subunit 67.6 3.7 0.00013 28.9 2.8 24 76-99 29-53 (234)
158 1dmz_A Protein (protein kinase 66.7 2.5 8.5E-05 28.4 1.6 23 77-99 85-109 (158)
159 2xt9_B Putative signal transdu 66.6 3.8 0.00013 25.7 2.4 22 76-98 74-95 (115)
160 3dh3_A Ribosomal large subunit 65.9 4 0.00014 30.2 2.8 24 76-99 32-55 (290)
161 3bbn_D Ribosomal protein S4; s 65.6 5 0.00017 28.4 3.1 28 73-100 112-140 (201)
162 3kt9_A Aprataxin; FHA domain, 64.0 4.2 0.00014 25.7 2.2 23 78-100 67-91 (102)
163 2h88_B Succinate dehydrogenase 64.0 14 0.00049 26.1 5.4 78 23-100 10-101 (252)
164 1wv3_A Similar to DNA segregat 63.8 4.2 0.00014 29.1 2.5 22 77-98 137-159 (238)
165 2ns5_A Partitioning-defective 63.8 5.7 0.00019 24.5 2.7 33 24-66 2-37 (85)
166 1wf9_A NPL4 family protein; be 63.4 20 0.00069 22.0 5.4 35 24-66 7-42 (107)
167 1vio_A Ribosomal small subunit 63.4 4.8 0.00016 28.5 2.7 24 76-99 28-52 (243)
168 1uht_A Expressed protein; FHA 63.4 3.2 0.00011 26.2 1.6 24 76-99 77-102 (118)
169 1g6g_A Protein kinase RAD53; b 63.1 5.8 0.0002 25.3 2.9 27 76-102 80-108 (127)
170 1g3g_A Protien kinase SPK1; FH 62.7 4.9 0.00017 27.0 2.6 26 76-101 108-135 (164)
171 3uf8_A Ubiquitin-like protein 62.0 36 0.0012 23.5 8.6 71 24-105 21-96 (209)
172 3ivf_A Talin-1; FERM domain, c 61.3 28 0.00095 25.9 6.7 68 24-100 3-83 (371)
173 2kb3_A Oxoglutarate dehydrogen 57.1 5.1 0.00017 26.5 1.8 21 77-98 110-130 (143)
174 1qu5_A Protein kinase SPK1; FH 57.0 2.9 0.0001 28.8 0.6 22 77-98 109-132 (182)
175 2kfu_A RV1827 PThr 22; FHA dom 56.4 6.1 0.00021 26.7 2.1 21 77-98 119-139 (162)
176 2kdd_A Borealin; protein dimer 56.3 3 0.0001 25.1 0.5 26 74-105 7-32 (76)
177 3oun_A Putative uncharacterize 56.2 5.8 0.0002 26.9 2.0 21 77-98 129-149 (157)
178 2xzm_D Ribosomal protein S4 co 55.5 5.2 0.00018 27.8 1.7 34 72-105 129-167 (181)
179 1mzk_A Kinase associated prote 55.1 5.7 0.00019 25.8 1.8 23 76-98 77-109 (139)
180 3j20_D 30S ribosomal protein S 54.4 12 0.0004 26.1 3.3 31 73-103 126-161 (180)
181 2l76_A Nfatc2-interacting prot 54.3 37 0.0013 21.2 9.5 66 24-100 21-91 (95)
182 3va4_A Mediator of DNA damage 54.2 6.9 0.00023 25.5 2.0 22 77-98 91-116 (132)
183 2ktr_A Sequestosome-1; autopha 52.7 16 0.00055 23.7 3.6 19 52-70 57-75 (117)
184 1v9f_A Ribosomal large subunit 52.6 2.9 0.0001 31.0 0.0 49 51-99 16-67 (325)
185 3jxo_A TRKA-N domain protein; 51.8 24 0.00082 20.2 4.1 26 75-100 44-71 (86)
186 3els_A PRE-mRNA leakage protei 51.4 6.3 0.00022 26.5 1.5 24 77-100 119-144 (158)
187 4da1_A Protein phosphatase 1K, 51.0 3.2 0.00011 31.4 0.0 85 10-105 16-105 (389)
188 2ff4_A Probable regulatory pro 50.8 7.2 0.00025 29.4 1.9 23 76-98 349-371 (388)
189 3r8n_D 30S ribosomal protein S 50.6 2.4 8.1E-05 30.2 -0.8 27 74-100 119-146 (205)
190 2al3_A TUG long isoform; TUG U 49.9 43 0.0015 20.6 6.8 67 24-100 9-80 (90)
191 2jpe_A Nuclear inhibitor of pr 49.1 3.9 0.00013 26.6 0.2 22 77-98 102-125 (140)
192 3elv_A PRE-mRNA leakage protei 49.0 8 0.00027 27.4 1.8 25 77-101 166-192 (205)
193 3u52_E Phenol hydroxylase comp 47.9 55 0.0019 21.3 5.6 73 29-101 25-109 (119)
194 4a9a_A Ribosome-interacting GT 47.7 13 0.00044 28.3 3.0 20 80-99 355-374 (376)
195 1ip9_A BEM1 protein; ubiquitin 45.9 36 0.0012 20.9 4.2 34 24-65 12-45 (85)
196 1t0y_A Tubulin folding cofacto 45.1 55 0.0019 20.5 5.8 54 43-99 19-84 (122)
197 2l05_A Serine/threonine-protei 44.9 55 0.0019 20.4 6.0 53 43-98 29-87 (95)
198 1wgr_A Growth factor receptor- 43.2 59 0.002 20.3 5.2 26 40-65 18-43 (100)
199 3iz6_C 40S ribosomal protein S 43.0 2.2 7.4E-05 30.2 -1.9 30 76-105 135-169 (195)
200 3ix6_A TS, tsase, thymidylate 43.0 5.1 0.00017 30.8 0.0 61 42-105 31-96 (360)
201 3tla_A MCCF; serine protease, 42.1 14 0.00049 28.1 2.4 17 88-104 38-54 (371)
202 2brf_A Bifunctional polynucleo 41.2 13 0.00044 23.8 1.7 23 78-100 73-97 (110)
203 4g65_A TRK system potassium up 38.5 62 0.0021 24.9 5.6 41 58-100 174-216 (461)
204 1wz3_A Autophagy 12B, ATG12B, 38.1 40 0.0014 20.8 3.6 38 43-85 29-66 (96)
205 2cqj_A BRMS2, U3 small nucleol 34.9 7.8 0.00027 22.6 -0.1 25 76-100 34-61 (71)
206 3uv0_A Mutator 2, isoform B; F 34.2 7.4 0.00025 24.8 -0.3 19 77-96 64-82 (102)
207 3ny5_A Serine/threonine-protei 33.8 87 0.003 19.5 6.9 52 43-97 25-82 (96)
208 2pjh_A Protein NPL4, nuclear p 33.6 31 0.001 20.3 2.5 55 43-100 15-79 (80)
209 2r2q_A Gamma-aminobutyric acid 32.9 74 0.0025 19.8 4.4 63 23-89 26-89 (110)
210 1rm6_C 4-hydroxybenzoyl-COA re 32.0 58 0.002 21.7 4.0 61 42-103 12-80 (161)
211 1wxm_A A-RAF proto-oncogene se 30.0 97 0.0033 18.9 6.2 53 43-98 19-77 (86)
212 4b6w_A Tubulin-specific chaper 29.5 90 0.0031 18.3 5.4 58 40-99 13-81 (86)
213 3j20_E 30S ribosomal protein S 29.5 89 0.003 22.6 4.8 36 52-98 57-93 (243)
214 3g2b_A Coenzyme PQQ synthesis 29.5 41 0.0014 20.5 2.6 20 48-67 52-71 (95)
215 3qij_A Protein 4.1; cytoskelet 29.4 65 0.0022 23.2 4.1 39 20-65 13-51 (296)
216 1yj5_C 5' polynucleotide kinas 29.1 23 0.00077 23.8 1.4 23 78-100 73-97 (143)
217 1ffv_A CUTS, iron-sulfur prote 29.0 70 0.0024 21.5 4.0 61 42-103 13-81 (163)
218 1vct_A Hypothetical protein PH 29.0 70 0.0024 21.7 4.1 26 75-100 153-181 (205)
219 4ajy_B Transcription elongatio 28.9 1.2E+02 0.004 19.5 6.8 59 41-102 11-81 (118)
220 3w1s_C Ubiquitin-like protein 28.8 1E+02 0.0035 18.8 5.3 52 26-85 8-61 (91)
221 2kjr_A CG11242; UBL, ubiquitin 28.7 98 0.0034 18.6 5.6 73 20-99 11-93 (95)
222 3fm3_A Methionine aminopeptida 28.3 1.4E+02 0.0048 22.2 6.0 50 48-98 66-129 (358)
223 1h4r_A Merlin; FERM, neurofibr 27.6 78 0.0027 22.7 4.3 38 20-65 18-55 (314)
224 3mt5_A Potassium large conduct 27.5 1.1E+02 0.0038 25.6 5.6 50 44-100 198-260 (726)
225 2kj6_A Tubulin folding cofacto 26.5 1.1E+02 0.0038 18.4 5.9 70 22-99 12-93 (97)
226 1eo6_A GATE-16, golgi-associat 26.4 77 0.0026 20.1 3.6 44 44-89 47-90 (117)
227 1q1o_A Cell division control p 26.2 1.1E+02 0.0037 19.1 4.2 41 24-65 5-46 (98)
228 3h9d_A ATG8, microtubule-assoc 25.7 1.1E+02 0.0039 19.4 4.4 44 44-89 50-93 (119)
229 3naf_A Calcium-activated potas 24.6 1.2E+02 0.0041 25.6 5.3 54 40-100 244-310 (798)
230 3ico_A 6PGL, 6-phosphogluconol 24.0 50 0.0017 23.8 2.6 44 42-86 55-98 (268)
231 2fl8_A Baseplate structural pr 24.0 42 0.0014 27.5 2.4 32 73-104 219-250 (602)
232 4hpf_A Potassium channel subfa 23.7 1.6E+02 0.0056 23.8 5.9 50 44-100 198-262 (722)
233 3rui_B Autophagy-related prote 23.5 1.4E+02 0.0049 18.9 4.5 43 44-88 49-91 (118)
234 3kbg_A 30S ribosomal protein S 23.5 1E+02 0.0034 21.9 4.1 23 76-98 35-58 (213)
235 2dzm_A FAS-associated factor 1 23.3 81 0.0028 19.3 3.2 60 42-103 19-84 (100)
236 3m95_A Autophagy related prote 22.6 1.4E+02 0.0047 19.3 4.3 43 44-88 55-97 (125)
237 3fpn_B Geobacillus stearotherm 22.6 1.4E+02 0.0048 18.3 4.4 23 42-64 13-35 (106)
238 3p42_A Predicted protein; beta 21.7 57 0.0019 23.2 2.5 64 28-98 129-200 (236)
239 1ef1_A Moesin; membrane, FERM 21.6 1.3E+02 0.0045 21.1 4.5 33 25-65 2-34 (294)
240 4he6_A Peptidase family U32; u 20.9 59 0.002 19.1 2.1 17 86-102 26-42 (89)
241 3ivr_A Putative long-chain-fat 20.3 1.7E+02 0.0058 21.9 5.1 46 51-102 5-65 (509)
242 2npt_B Mitogen-activated prote 20.2 1.7E+02 0.0058 18.3 4.4 37 23-67 19-55 (100)
243 4gmv_A RAS-associated and plec 20.1 1.3E+02 0.0044 22.0 4.2 35 26-65 31-65 (281)
No 1
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=99.94 E-value=5.6e-27 Score=151.92 Aligned_cols=83 Identities=28% Similarity=0.546 Sum_probs=74.6
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhc--------ceeEEEECCeecCCCCccCCCC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIR--------GCMVLALNEEYTNASVIVNEKD 94 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~--------~~~~vaVNg~~v~~d~~L~dGD 94 (105)
.+|+|+|+|||.||+++|..+++++++++.|+++|++.|..+||++++.+ +.++|+|||++++++++|++||
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGD 87 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGD 87 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTC
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCC
Confidence 46999999999999999998999999988999999999999999887653 6799999999999999999999
Q ss_pred EEEEEcCCCCC
Q 034057 95 ELAIIPPISGG 105 (105)
Q Consensus 95 eVaiiPPvsGG 105 (105)
+|+|||||+||
T Consensus 88 eV~i~ppv~GG 98 (98)
T 1vjk_A 88 VVGVFPPVSGG 98 (98)
T ss_dssp EEEEESCC---
T ss_pred EEEEECCCCCC
Confidence 99999999998
No 2
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=99.94 E-value=4.6e-26 Score=144.71 Aligned_cols=80 Identities=28% Similarity=0.466 Sum_probs=74.3
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchh-h-------cceeEEEECCeecCCCCccCCCCEEE
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEE-I-------RGCMVLALNEEYTNASVIVNEKDELA 97 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~-~-------~~~~~vaVNg~~v~~d~~L~dGDeVa 97 (105)
+|+|+|||.||+++|+.+++++++++.|+++|+++|..+||++++ + ++.++|+|||++++++++|++||+|+
T Consensus 2 ~i~V~~fa~lre~~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~ 81 (89)
T 3po0_A 2 SMEWKLFADLAEVAGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELA 81 (89)
T ss_dssp EEEEEECHHHHHHHTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEE
T ss_pred EEEEEEcHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEE
Confidence 589999999999999989999999899999999999999998864 2 24589999999999999999999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
|||||+||
T Consensus 82 i~Ppv~GG 89 (89)
T 3po0_A 82 LFPPVSGG 89 (89)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99999998
No 3
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=99.92 E-value=4.4e-25 Score=137.58 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=72.0
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhc--ceeEEEECCeecCCCCccCCCCEEEEEcCCC
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIR--GCMVLALNEEYTNASVIVNEKDELAIIPPIS 103 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~--~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvs 103 (105)
+|+|+|||.||+++|+.+++++ +++.|+.+|++.|..+||++++.+ ..++|+|||++++++++|++||+|+||||++
T Consensus 1 ~v~V~~fa~lr~~~g~~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 1 MIKVLFFAQVRELVGTDATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp CEEEEECHHHHHHHTCSEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEECCCC
T ss_pred CEEEEEeHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeCCCC
Confidence 4899999999999998888887 778999999999999999887653 3579999999999999999999999999999
Q ss_pred CC
Q 034057 104 GG 105 (105)
Q Consensus 104 GG 105 (105)
||
T Consensus 80 GG 81 (81)
T 1fm0_D 80 GG 81 (81)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 4
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=99.92 E-value=8e-25 Score=142.07 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=72.1
Q ss_pred eEEEEEecHHhHhhc-CCCceEEEeC--CCCCHHHHHHHHHHhCCCch----------hhcceeEEEECCeecC----CC
Q 034057 25 IQIKVLFFARARDLT-GLTDMPLEVS--CGSTTQDCLNKLIARFPNLE----------EIRGCMVLALNEEYTN----AS 87 (105)
Q Consensus 25 m~V~V~~fg~lre~~-g~~~~~vev~--~~~tv~dLl~~L~~~~p~l~----------~~~~~~~vaVNg~~v~----~d 87 (105)
|+|+|+|||.+|+++ |+++++++++ ++.|+++|+++|.++||++. .+++.+.++||++++. +|
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d 81 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKD 81 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCC
Confidence 899999999999999 7888889988 78999999999999998632 2345688999999874 68
Q ss_pred CccCCCCEEEEEcCCCCC
Q 034057 88 VIVNEKDELAIIPPISGG 105 (105)
Q Consensus 88 ~~L~dGDeVaiiPPvsGG 105 (105)
++|++||+|+||||++||
T Consensus 82 ~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 82 YILEDGDIISFTSTLHGG 99 (99)
T ss_dssp CBCCTTCEEEEEECTTCC
T ss_pred cCcCCCCEEEEECCCCCC
Confidence 999999999999999998
No 5
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=99.91 E-value=8.4e-25 Score=135.28 Aligned_cols=77 Identities=31% Similarity=0.573 Sum_probs=70.9
Q ss_pred EEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 27 V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
|+|+|||.||+++|..+++++++++.|+.+|++.|..+||++..+ .++++|||++++.++.|++||+|+||||++||
T Consensus 1 i~V~~fa~lr~~~g~~~~~~~~~~~~tv~~ll~~l~~~~p~~~~v--~~~v~vNg~~v~~~~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 1 MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNK--KFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp CEEECCHHHHHHHTCSEEECCCSSCEEHHHHHHHHHHHCGGGTTC--CCEEEETTEEECTTSEECTTCEEEEECSCCCC
T ss_pred CEEEEeHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCcchhcc--eEEEEECCEECCCCCCcCCCCEEEEECCCCCC
Confidence 589999999999999888999988999999999999999876543 35899999999999999999999999999998
No 6
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=99.91 E-value=2.4e-24 Score=137.87 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=69.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhh----------cceeEEEECCeecC----CCCcc
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEI----------RGCMVLALNEEYTN----ASVIV 90 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~----------~~~~~vaVNg~~v~----~d~~L 90 (105)
|+|+|+|||.||+++|.. .+++. ++.|+++|++.|..+||++++. ++.++|+|||++++ .+++|
T Consensus 1 M~v~V~~fa~lr~~~g~~-~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQ-KSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTC-SEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBC
T ss_pred CEEEEEEeHHHHHHhCCC-eEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCC
Confidence 789999999999999963 46774 5789999999999999988653 23699999999997 58999
Q ss_pred CCCCEEEEEcCCCCC
Q 034057 91 NEKDELAIIPPISGG 105 (105)
Q Consensus 91 ~dGDeVaiiPPvsGG 105 (105)
++||+|+|||||+||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 999999999999999
No 7
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=99.90 E-value=2.6e-23 Score=135.13 Aligned_cols=80 Identities=29% Similarity=0.617 Sum_probs=69.8
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhh-------ccee-------EEEECCeec----
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEI-------RGCM-------VLALNEEYT---- 84 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~-------~~~~-------~vaVNg~~v---- 84 (105)
.+|+|+|+|||.||+++|.++.+++ +.|+.+|++.|..+||++++. ++.+ +|+|||+++
T Consensus 2 ~mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 2 HMAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CCCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred CceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 3589999999999999998766555 689999999999999987652 2346 899999999
Q ss_pred CCCCccCCCCEEEEEcCCCCC
Q 034057 85 NASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 85 ~~d~~L~dGDeVaiiPPvsGG 105 (105)
..+++|++||+|+|||||+||
T Consensus 79 ~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 79 GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp STTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCCEEEEECCCCCC
Confidence 578999999999999999998
No 8
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=99.89 E-value=1e-23 Score=130.25 Aligned_cols=73 Identities=22% Similarity=0.454 Sum_probs=65.1
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCee-cCCCCccCCCCEEEEEcCCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEY-TNASVIVNEKDELAIIPPIS 103 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~-v~~d~~L~dGDeVaiiPPvs 103 (105)
|+|+|+|||.+|+ +++++ ++.|+++|+++|..+ |+++++++.++++|||++ .+++++|++||+|+||||++
T Consensus 1 M~v~V~~fa~l~~------~~~e~-~~~tv~~ll~~L~~~-~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~Ppvs 72 (74)
T 3rpf_C 1 MMVEVRFFGPIKE------ENFFI-KANDLKELRAILQEK-EGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPPVC 72 (74)
T ss_dssp CEEEEEECTTCCC------CCEEE-ECSSHHHHHHHHHTC-TTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEECCBC
T ss_pred CEEEEEEEeecce------eEEee-CCCcHHHHHHHHHHC-cCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEECCCC
Confidence 7899999999998 34666 678999999999875 778777788999999999 67899999999999999999
Q ss_pred CC
Q 034057 104 GG 105 (105)
Q Consensus 104 GG 105 (105)
||
T Consensus 73 GG 74 (74)
T 3rpf_C 73 GG 74 (74)
T ss_dssp CC
T ss_pred CC
Confidence 99
No 9
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=99.88 E-value=1.1e-22 Score=128.73 Aligned_cols=77 Identities=17% Similarity=0.341 Sum_probs=68.8
Q ss_pred EEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhh--------cceeEEEECCeecC----CCCccCCCC
Q 034057 27 IKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEI--------RGCMVLALNEEYTN----ASVIVNEKD 94 (105)
Q Consensus 27 V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~--------~~~~~vaVNg~~v~----~d~~L~dGD 94 (105)
|+|+|||.||+++|.++. +++.+.|+.+|++.|..+||++++. ++.++|+|||++++ .+++|++||
T Consensus 2 v~V~~fa~lr~~~g~~~~--~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD 79 (90)
T 2g1e_A 2 VTVRYYATLRPITKKKEE--TFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDD 79 (90)
T ss_dssp EEEEECSTHHHHHTCSEE--EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTC
T ss_pred EEEEEeHHHHHHcCCCEE--EcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCC
Confidence 899999999999997544 5666789999999999999988765 26789999999996 689999999
Q ss_pred EEEEEcCCCCC
Q 034057 95 ELAIIPPISGG 105 (105)
Q Consensus 95 eVaiiPPvsGG 105 (105)
+|+|||||+||
T Consensus 80 ~V~i~ppv~GG 90 (90)
T 2g1e_A 80 KIDLFPPVAGG 90 (90)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEeCCCCCC
Confidence 99999999998
No 10
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=99.85 E-value=2.3e-21 Score=129.27 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=72.5
Q ss_pred CceEEEEEecHHhHhhcCC-CceEEEeCC---CCCHHHHHHHHHHhCCCchh--------hcceeEEEECCeec----CC
Q 034057 23 SSIQIKVLFFARARDLTGL-TDMPLEVSC---GSTTQDCLNKLIARFPNLEE--------IRGCMVLALNEEYT----NA 86 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~-~~~~vev~~---~~tv~dLl~~L~~~~p~l~~--------~~~~~~vaVNg~~v----~~ 86 (105)
++|+|+|+|||.||+++|. ++.+++++. +.|+++|+++|.++||.+++ +++.++|+||++.+ ..
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 4599999999999999995 466789883 36999999999999986542 57789999999976 47
Q ss_pred CCccCCCCEEEEEcCCCCC
Q 034057 87 SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 87 d~~L~dGDeVaiiPPvsGG 105 (105)
|++|++||+|+||||++||
T Consensus 90 dt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TCBCCSSEEEEEEECSCCC
T ss_pred CcCCCCCCEEEEeCCCCCC
Confidence 9999999999999999998
No 11
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=99.78 E-value=2e-19 Score=119.30 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=71.3
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCC----CCCHHHHHHHHHHhCCCch----------hhcceeEEEECCeec----C
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSC----GSTTQDCLNKLIARFPNLE----------EIRGCMVLALNEEYT----N 85 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~----~~tv~dLl~~L~~~~p~l~----------~~~~~~~vaVNg~~v----~ 85 (105)
+|+|+|+|||.|++++|+ +.++++|+ +.|+++|+++|.++||.++ ++++.+.|+|||+.+ .
T Consensus 4 ~m~v~V~f~g~l~~l~g~-~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAK-QTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SSCCEEEEESSCGGGTTS-CSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred ccEEEEEEEecHHHHhCC-eEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 499999999999999995 67899984 3699999999999997542 256779999999998 4
Q ss_pred CCCccCCCCEEEEEcCCCCC
Q 034057 86 ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 86 ~d~~L~dGDeVaiiPPvsGG 105 (105)
.+++|++||+|+||||++||
T Consensus 83 ldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC
T ss_pred cccCCCCcCEEEEeCCCccc
Confidence 79999999999999999998
No 12
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=99.78 E-value=4.4e-19 Score=125.07 Aligned_cols=75 Identities=31% Similarity=0.500 Sum_probs=67.2
Q ss_pred EEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhh-------cceeEEEECCeecCC----CCccCCCCEE
Q 034057 28 KVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEI-------RGCMVLALNEEYTNA----SVIVNEKDEL 96 (105)
Q Consensus 28 ~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~-------~~~~~vaVNg~~v~~----d~~L~dGDeV 96 (105)
+|+|||.||+++|+. +++++. .|+.+|++.|..+||+++.. .+.++|+|||++++. +++|++||+|
T Consensus 2 ~V~~FA~Lre~~G~~--~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeV 78 (168)
T 1v8c_A 2 KVNLYATFRDLTGKS--QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATL 78 (168)
T ss_dssp EEEECTHHHHHHTCS--EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEE
T ss_pred EEEEeHHHHHHhCCC--eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEE
Confidence 799999999999975 456665 89999999999999988763 467899999999987 8999999999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
+|||||+||
T Consensus 79 ai~PpVsGG 87 (168)
T 1v8c_A 79 DLFPPVAGG 87 (168)
T ss_dssp EEECSCCSE
T ss_pred EEECccccc
Confidence 999999998
No 13
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=99.68 E-value=2.1e-18 Score=107.27 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=61.5
Q ss_pred ecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 31 FFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 31 ~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
-||.+|+.+|...+.++++++.|+.+|++.|. +| .+.++|+|||++++.++.|++||+|+|||||+||
T Consensus 10 ~fa~~~e~~~~n~~~~~~~~~~Tv~dLl~~L~--~~-----~~~v~VavNg~~v~~~~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 10 KMIKVKVIGRNIEKEIEWREGMKVRDILRAVG--FN-----TESAIAKVNGKVVLEDDEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCBSTTCCCCCCCCCCSSCCHHHHHHTTT--CS-----SCSSCEEETTEEECSSSCCCSSCCCBCSCCCCCC
T ss_pred HHHHHHHhcccCCEEEECCCCCcHHHHHHHhC--CC-----CcCEEEEECCEECCCCCCcCCCCEEEEEcccccC
Confidence 48999999999999999999999999999986 33 2457899999999999999999999999999998
No 14
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=99.54 E-value=1.2e-14 Score=88.64 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=49.1
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
+.+++++++.|+.+|+++|... .+.+++++||++++.++.|++||+|+|||||+||
T Consensus 15 ~~~~~~~~~~tv~~Ll~~l~~~-------~~~v~vavN~~~v~~~~~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 15 KKILESGAPRRIKDVLGELEIP-------IETVVVKKNGQIVIDEEEIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEEESSCCBHHHHHHHTTCC-------TTTEEEEETTEECCTTSBCCTTCEEEEEECTTCC
T ss_pred ceeEECCCCCcHHHHHHHhCCC-------CCCEEEEECCEECCCcccCCCCCEEEEEeccccC
Confidence 4568888889999999998532 1457899999999999999999999999999998
No 15
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=99.50 E-value=1.3e-14 Score=87.37 Aligned_cols=55 Identities=25% Similarity=0.472 Sum_probs=47.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaiiPPvsGG 105 (105)
+.++++++.|+.+|++.|... .+.++|++|+++++. ++.|++||+|+|||||+||
T Consensus 8 ~~~~~~~~~tv~~ll~~l~~~-------~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 8 QAMQCAAGQTVHELLEQLDQR-------QAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp CEECCCTTCCHHHHHHHHTCC-------CSSEEEEETTEEECHHHHTTCCCCTTEEECEEESCCCC
T ss_pred EEEEcCCCCcHHHHHHHcCCC-------CCCEEEEECCEECCchhcCCcCCCCCCEEEEEeecccC
Confidence 467788889999999999532 246789999999985 7999999999999999998
No 16
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=99.47 E-value=4.1e-14 Score=84.79 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=45.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC----CccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS----VIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d----~~L~dGDeVaiiPPvsGG 105 (105)
+.+++ ++.|+.+|++.|... .+.++|++|+++++.+ +.|++||+|+|||||+||
T Consensus 7 ~~~~~-~~~tv~~ll~~l~~~-------~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 7 EPRPL-EGKTLKEVLEEMGVE-------LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp EEECC-TTCCHHHHHHHHTBC-------GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC-
T ss_pred EEEEc-CCCcHHHHHHHcCCC-------CCcEEEEECCEECCccccCCcCCCCCCEEEEEeecccC
Confidence 46677 779999999999532 2467899999999854 899999999999999998
No 17
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=99.44 E-value=6.4e-14 Score=86.67 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=57.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISG 104 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsG 104 (105)
|+|+|++||. ....+++++++|++||++.|...- +.+++++||+++++|..+. ||+|.|++.++|
T Consensus 1 M~v~Vkl~g~-------~~~~~ev~~g~Tv~dLL~~Lgl~~-------~~VvV~vNG~~v~~d~~l~-GD~VeIv~~V~G 65 (74)
T 2l32_A 1 MNVTVEVVGE-------ETSEVAVDDDGTYADLVRAVDLSP-------HEVTVLVDGRPVPEDQSVE-VDRVKVLRLIKG 65 (74)
T ss_dssp CEEEEECSSS-------SEEEEECSTTCSHHHHHHTTCCCS-------SCCCEECCCCCCCTTSSSC-CCCEEECSSCSC
T ss_pred CEEEEEEeCc-------cceeEEcCCCCcHHHHHHHcCCCc-------ceEEEEECCEECCHHHCCC-CCEEEEEEeecc
Confidence 8899999976 356789999999999999886432 3468999999999999885 999999999999
Q ss_pred C
Q 034057 105 G 105 (105)
Q Consensus 105 G 105 (105)
|
T Consensus 66 ~ 66 (74)
T 2l32_A 66 G 66 (74)
T ss_dssp C
T ss_pred c
Confidence 8
No 18
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=99.42 E-value=1.1e-13 Score=88.08 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=47.0
Q ss_pred ceEEEeCCC-CCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEEcCCCCC
Q 034057 43 DMPLEVSCG-STTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 43 ~~~vev~~~-~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaiiPPvsGG 105 (105)
.+.++++++ .|+.+|++.|... .+.++|+|||++++. ++.|++||+|+|||||+||
T Consensus 27 Ge~~el~~~~~Tv~dLL~~L~~~-------~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 27 GKDVKWKKDTGTIQDLLASYQLE-------NKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TEEECCSSSCCBHHHHHHHTTCT-------TSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC-
T ss_pred CEEEECCCCCCcHHHHHHHhCCC-------CCCEEEEECCEECChhhcCCcCCCCCCEEEEEcccccC
Confidence 457888887 9999999998532 245789999999985 6899999999999999998
No 19
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=99.21 E-value=9.2e-12 Score=77.59 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=47.3
Q ss_pred eEEEeC--CCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC----CccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVS--CGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS----VIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~--~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d----~~L~dGDeVaiiPPvsGG 105 (105)
+.++++ ++.|+.+|++.|....| +.++|++||++++.+ +.|++||+|.|+|||+||
T Consensus 8 e~~e~~~~~~~Tl~~LL~~l~~~~~------~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 8 KPSTVDGAESLNVTELLSALKVAQA------EYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEEECSSCSCEEHHHHHHHHTCSCT------TTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred EEEEcCCCCCCcHHHHHHHcCCCCC------CcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCC
Confidence 467777 88999999999864311 347899999999864 899999999999999998
No 20
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=99.20 E-value=2e-11 Score=75.15 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=45.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCEEEEEcCCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDeVaiiPPvsGG 105 (105)
+.+++ ++.|+.+|++.|... .+.++|++||++++. ++.|++||+|.|+|||+||
T Consensus 8 ~~~e~-~~~Tl~~LL~~l~~~-------~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 8 EQREV-QSASVAALMTELDCT-------GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp EEECC-CCSBHHHHHHHTTCC-------SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCC
T ss_pred EEEEc-CCCcHHHHHHHcCCC-------CCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCC
Confidence 46667 679999999988633 145789999999984 6899999999999999998
No 21
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=99.12 E-value=1e-10 Score=75.76 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=61.1
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHH--hCCCchhhcceeEEEECCeecCCCCccCCCCEEEEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIA--RFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~--~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
-..|.|.|-|--+-+. ....+++++++|+.++++.++. ++|++. +..+.+.|||+.+++++.|++||.|.|+
T Consensus 10 ~~~~~v~v~ya~p~rq----~~~~~~v~~g~TV~daI~~~gi~~~~peId--l~~~~V~Vng~~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 10 LNQINIEIAYAFPERY----YLKSFQVDEGITVQTAITQSGILSQFPEID--LSTNKIGIFSRPIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp -CEEEEEEEEEETTEE----EEEEEEEETTCBHHHHHHHHTHHHHCTTCC--TTTSEEEEEECSCCTTCBCCTTCEEEEC
T ss_pred cceEEEEEEEeCCCCC----EEEEEEcCCCCcHHHHHHHcCCCccCCccc--ccccEEEEcCEECCCCccCCCCCEEEEE
Confidence 3458899888755432 3457788999999999999876 777653 2357899999999999999999999999
Q ss_pred cCCC
Q 034057 100 PPIS 103 (105)
Q Consensus 100 PPvs 103 (105)
||+.
T Consensus 84 rpl~ 87 (97)
T 2hj1_A 84 RPLL 87 (97)
T ss_dssp CCCC
T ss_pred eccc
Confidence 9984
No 22
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.54 E-value=1.5e-07 Score=56.37 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=45.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISG 104 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsG 104 (105)
...+++.++|+.+++..+... +. .+.+.+.|||+.++++++|++||.|.|+++.++
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~---l~--~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSD---LG--DHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSH---HH--HTEEEEEETTEECCTTCBCCSSSBEEEEECCCC
T ss_pred CEEEcCCCCcHHHHHHHHhhc---cc--cceEEEEECCEEeCCCcCcCCCCEEEEEECCCC
Confidence 357889999999999887422 21 245788999999999999999999999998764
No 23
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.04 E-value=1e-05 Score=50.07 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=44.2
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
...+++|.|+|+.|+...+ ++++.. ..+..-|||+.++++++|++||.|.|+..
T Consensus 15 G~~~~lp~GaT~~D~A~~I---h~~lg~--~~v~AkVNG~~v~L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 15 GDVISLPIGSTVIDFAYAI---HSAVGN--RMIGAKVDGRIVPIDYKVKTGEIIDVLTT 68 (78)
T ss_dssp SCEEEEETTCBHHHHHHHH---CHHHHH--TEEEEEETTEEECTTCBCCTTCBEEEEEC
T ss_pred CCEEEecCCCCHHHHHHHh---hhhhhc--ceEEEEECCEEcCCCcccCCCCEEEEEcc
Confidence 4578899999999988766 333432 45778899999999999999999999864
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.72 E-value=0.00036 Score=41.94 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=54.7
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVa 97 (105)
++|+|+|+.+. | ....++++...||.+|.+.+.+... +. .....+..+|+....+ +-+++|+.|.
T Consensus 2 s~m~i~vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 2 SHMQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLF 71 (85)
T ss_dssp -CEEEEEECTT------S-CEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEE
T ss_pred CeEEEEEEcCC------C-CEEEEEECCCCCHHHHHHHHHHHHC-cC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEE
Confidence 56999998763 3 4678899888999999999988652 11 1234566799887654 4578999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++...-||
T Consensus 72 l~~r~~GG 79 (85)
T 3mtn_B 72 LLLRLRGG 79 (85)
T ss_dssp EECCCCCC
T ss_pred EEEECcCC
Confidence 99998887
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.67 E-value=0.00048 Score=41.44 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=52.2
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
++|+|+|+.+. | ....++++...||.+|.+.+.+... +. .....+..+|+.... ++-+++|+.|.
T Consensus 2 s~m~i~vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 2 SHMRIVVKTLM------G-RTIILEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALY 71 (85)
T ss_dssp --CEEEEECGG------G-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEE
T ss_pred CeEEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-CC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEE
Confidence 46899998753 3 3578899888999999999988652 11 123466678888764 45688899999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++...-||
T Consensus 72 l~~rl~GG 79 (85)
T 3n3k_B 72 LLLKLRGG 79 (85)
T ss_dssp EEECCC--
T ss_pred EEEeccCC
Confidence 99888776
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.60 E-value=0.00079 Score=39.41 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=53.5
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|+|+... | ....++++...|+.+|.+.+.+... +. .....+..+|+.... +.-+.+|+.|.++
T Consensus 1 M~i~vk~~~------g-~~~~i~v~~~~tv~~lK~~i~~~~~-i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 1 MQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp CEEEEEETT------S-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CEEEEEcCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-cC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 678887753 3 3578889888999999999988652 11 134566778988754 3457899999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 71 ~~~~GG 76 (76)
T 3a9j_A 71 LRLRGG 76 (76)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 999998
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.55 E-value=0.00082 Score=40.72 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCE
Q 034057 21 KESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDE 95 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDe 95 (105)
++.+|+|+|+.+. | ....++++...||.+|...+.+... +. .....+..+|+.... ++-+++|+.
T Consensus 9 ~~~~m~i~vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~g-ip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~ 78 (88)
T 3dbh_I 9 SGGSMLIKVKTLT------G-KEIEIDIEPTDKVERIKERVEEKEG-IP--PQQQRLIYSGKQMNDEKTAADYKILGGSV 78 (88)
T ss_dssp CCCCEEEEEECTT------S-CEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGCCEEETTEECCTTSBGGGGTCCTTCE
T ss_pred CCCcEEEEEEcCC------C-CEEEEEECCCCCHHHHHHHHHHHHC-cC--HHHEEEEECCeECCCCCcHHHcCCCCCCE
Confidence 4556999998763 3 4678899888999999999988752 11 122356678988764 456889999
Q ss_pred EEEEcCCCCC
Q 034057 96 LAIIPPISGG 105 (105)
Q Consensus 96 VaiiPPvsGG 105 (105)
|.++...-||
T Consensus 79 i~l~~rl~GG 88 (88)
T 3dbh_I 79 LHLVLRLRGG 88 (88)
T ss_dssp EEECCCCCCC
T ss_pred EEEEEeCCCC
Confidence 9999999998
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.46 E-value=0.0012 Score=38.65 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=51.3
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVaii 99 (105)
|+|+|+... | ....++++...|+.+|.+.+.+... +. .....+..+|+....+ +-+++|+.|.++
T Consensus 1 M~i~vk~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~~-i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 1 MLIKVKTLT------G-KEIEIDIEPTDKVERIKERVEEKEG-IP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp CEEEEECTT------S-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEECCC------C-CEEEEEECCCChHHHHHHHHHHHHC-cC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 677777653 3 3568889888999999999987652 11 1345667789888643 557799999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 71 ~~~~GG 76 (76)
T 1ndd_A 71 LALRGG 76 (76)
T ss_dssp ECCC--
T ss_pred EeCCCC
Confidence 999988
No 29
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.41 E-value=0.0015 Score=39.62 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=55.5
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDEL 96 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeV 96 (105)
+..|+|+|+... | ....++++...|+.+|.+.+.+... +. ....++..+|+....+ +-+.+|+.|
T Consensus 5 ~~~m~i~Vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~g-i~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 5 SSGIQVFVKNPD------G-GSYAYAINPNSFILGLKQQIEDQQG-LP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTL 74 (87)
T ss_dssp SSSEEEEEEETT------T-EEEEEEECSSSBHHHHHHHHHHHTC-CC--TTTEEEEETTEECCSSSBHHHHTCCTTEEE
T ss_pred CCCEEEEEEcCC------C-CEEEEEeCCCChHHHHHHHHHHHhC-CC--hHHEEEEECCEEccCCCCHHHCCCCCCCEE
Confidence 356999999753 3 3567889888999999999998762 21 1234667799888654 457799999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
.++...-||
T Consensus 75 ~l~~~~~GG 83 (87)
T 1wh3_A 75 ILSKKKGSG 83 (87)
T ss_dssp EEEECSCCC
T ss_pred EEEEeccCC
Confidence 999888887
No 30
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0013 Score=41.26 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=55.7
Q ss_pred cCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCC
Q 034057 19 DNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEK 93 (105)
Q Consensus 19 ~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dG 93 (105)
...+..|+|.|+... | ....++++...||.+|.+.|.+... +. ....++..+|+.... ++-|++|
T Consensus 17 ~~~~~~m~I~Vk~~~------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g 86 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLT------G-KTITLEVESSDTIDNVKSKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKE 86 (98)
T ss_dssp -----CCEEEEEETT------C-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGCEEEETTEECCTTCBSGGGTCCTT
T ss_pred CCCCCeEEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHhC-CC--hhHEEEEECCEECCCCCcHHHCCCCCC
Confidence 345566999998763 3 4678899888999999999988753 11 123466679988764 4568899
Q ss_pred CEEEEEcCCCCC
Q 034057 94 DELAIIPPISGG 105 (105)
Q Consensus 94 DeVaiiPPvsGG 105 (105)
+.|.++-..-||
T Consensus 87 ~~i~l~~rl~GG 98 (98)
T 4hcn_B 87 STLHLVLRLRGG 98 (98)
T ss_dssp EEEEEECBCSCC
T ss_pred CEEEEEEecCCC
Confidence 999999999998
No 31
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=97.30 E-value=0.0054 Score=39.27 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=54.1
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
.+|+|+|+... | ....++++...||.+|...+.+... +. .....+..+|+.... +.-+++|+.|.
T Consensus 34 ~~m~I~Vk~~~------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 34 LAMQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp SCEEEEEECSS------S-CEEEEEECTTCBHHHHHHHHHHHHC-CC--TTTEEEEETTEECCSSCBTTTTTCCTTCEEE
T ss_pred CeEEEEEEcCC------C-CEEEEEeCCCCCHHHHHHHHHHHHC-cC--cccEEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence 56999998642 3 4668889888999999999988652 11 123456678888754 45677999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++...-||
T Consensus 104 l~~rl~GG 111 (111)
T 2ojr_A 104 LVLRLRGG 111 (111)
T ss_dssp EEECCCC-
T ss_pred EEEeCCCC
Confidence 99999998
No 32
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.18 E-value=0.0057 Score=38.04 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=52.6
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVaii 99 (105)
|+|+|+... | ....++++...|+.+|...+..... +. .....+..+|+....+ +-+.+|+.|.++
T Consensus 1 M~I~Vk~~~------g-~~~~~~v~~~~TV~~LK~~I~~~~g-i~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 1 MQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp CEEEEEETT------S-CEEEEECCTTCBHHHHHHHHHHHTC-CC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-cC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 678888753 3 3568889888999999999998762 21 1335667789887643 457899999998
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
....||
T Consensus 71 ~~~~gG 76 (98)
T 1yx5_B 71 LRLRGG 76 (98)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 887776
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=97.16 E-value=0.004 Score=38.37 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=53.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|+|+... | ....++++...||.+|.+.+.+... +. .....+..+|+.... ++-+.+|+.|.++
T Consensus 2 m~i~vk~~~------g-~~~~~~v~~~~TV~~LK~~i~~~~g-ip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETT------C-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCC------C-CEEEEEECCCCCHHHHHHHHHhhhC-CC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 788888753 3 4678899888999999999988752 11 123566779988764 4568899999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 72 ~r~~gG 77 (96)
T 3k9o_B 72 LRLRGY 77 (96)
T ss_dssp ECCCC-
T ss_pred EEcCCC
Confidence 888776
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=97.08 E-value=0.0061 Score=39.10 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=54.9
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
.+|+|+|+... | ....++++...||.+|...|..... +. ....++..+|+.... +.-+++|+.|.
T Consensus 34 ~~m~I~Vk~~~------G-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~ 103 (111)
T 3vdz_A 34 LAMQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp GCEEEEEECSS------S-CEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEE
T ss_pred ccEEEEEEeCC------C-CEEEEEeCCCCCHHHHHHHHHHHhC-CC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEE
Confidence 45899988653 3 4678899888999999999988752 11 123466779988764 46788999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++...-||
T Consensus 104 l~~rl~GG 111 (111)
T 3vdz_A 104 LVLRLRGG 111 (111)
T ss_dssp EEECCCC-
T ss_pred EEEecCCC
Confidence 99999988
No 35
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.06 E-value=0.0095 Score=36.10 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=54.3
Q ss_pred CceEEEEEecHHhHhhcCCCceEE-EeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPL-EVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDEL 96 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~v-ev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeV 96 (105)
..|+|+|+... |.....+ +++...||.+|.+.+..... +. .....+..+|+....+ +-+.+|+.|
T Consensus 6 ~~m~i~Vk~~~------g~~~~~l~~v~~~~tV~~lK~~i~~~~g-ip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 6 SGMWIQVRTID------GSKTCTIEDVSRKATIEELRERVWALFD-VR--PECQRLFYRGKQLENGYTLFDYDVGLNDII 76 (89)
T ss_dssp SCEEEEEEETT------CSCEEEEEEECTTCBHHHHHHHHHHHSC-CC--TTTEEEEETTEECCSSSBHHHHTCCTTCEE
T ss_pred CcEEEEEEECC------CCceEEEEecCCCCCHHHHHHHHHHHHC-cC--hhhEEEEECCeECCCCCCHHHCCCCCCCEE
Confidence 45899988763 4346788 49888999999999988752 21 1234566789887654 457899999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
.++...-||
T Consensus 77 ~l~~~~~gG 85 (89)
T 1wy8_A 77 QLLVRPDSG 85 (89)
T ss_dssp EEEECCCCS
T ss_pred EEEEeCCCC
Confidence 998887776
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.06 E-value=0.0043 Score=38.53 Aligned_cols=71 Identities=17% Similarity=0.084 Sum_probs=53.0
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVa 97 (105)
..|+|.|+. | +...++++...|+.+|.+.+.+... +. ....++..+|+....+ +.+.+|+.|.
T Consensus 18 ~~m~I~Vk~--------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~ 85 (93)
T 2l7r_A 18 GSMQLFVRA--------Q-ELHTFEVTGQETVAQIKAHVASLEG-IA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLE 85 (93)
T ss_dssp --CEEEEES--------S-SEEEEECCSSCBHHHHHHHHHHHHT-CC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEE
T ss_pred CcEEEEEEC--------C-CEEEEEeCCCCcHHHHHHHHHHHhC-cC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEE
Confidence 348888885 4 4678899888999999999988642 11 1234667789888654 4577999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++...-||
T Consensus 86 lv~rl~GG 93 (93)
T 2l7r_A 86 VAGRMLGG 93 (93)
T ss_dssp EECCCCCC
T ss_pred EEEecCCC
Confidence 99999998
No 37
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=97.03 E-value=0.00086 Score=41.29 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=40.5
Q ss_pred EEEeCC-CCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 45 PLEVSC-GSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 45 ~vev~~-~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
..+++. ++|+.|+...+. +.+. ...+.+.|||+.++++++|.++++|.|+..
T Consensus 21 ~~~~~~~~~T~~dia~~i~---~~l~--~~~vaakvNg~l~dL~~~l~~d~~ve~vt~ 73 (88)
T 1wwt_A 21 QVDAESWKTTPYQIACGIS---QGLA--DNTVIAKVNNVVWDLDRPLEEDCTLELLKF 73 (88)
T ss_dssp EEEEETTTCCHHHHHHHSS---TTTG--GGCCCEEESSSEECSSSCCCSSEEEEECSS
T ss_pred EEEcccCCCCHHHHHHHhh---hccc--cceEEEEECCEEECCCcCcCCCCEEEEEeC
Confidence 466676 799999887763 3333 245677899999999999999999998853
No 38
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=97.01 E-value=0.0069 Score=37.08 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=51.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|+|+.+. | ....++++...||.+|.+.+.+... +. .+..++..+|+.... ++-+.+|+.|.++
T Consensus 1 M~I~Vk~~~------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 1 MLIKVKTLT------G-KEIEIDIEPTDKVERIKERVEEKEG-IP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp CEEEEEETT------C-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred CEEEEEcCC------C-CEEEEEECCCCCHHHHHHHHHHHHC-cC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 677887653 4 4678899888999999999987752 11 123456678988764 4678889999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
-..-||
T Consensus 71 ~rl~Gg 76 (88)
T 4fbj_B 71 LALRGG 76 (88)
T ss_dssp CBCC--
T ss_pred EECCCC
Confidence 887776
No 39
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.98 E-value=0.0061 Score=37.35 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=49.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.+. | +...++++...|+.+|.+.+.+... +. .+..++..+|+.... ++-+.+|+.|.++
T Consensus 10 ~~i~v~~~~------G-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 10 LQLFIKTLT------G-KTFTVEMEPSDTIENLKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp CEEEEEETT------S-CEEEEECCTTSBHHHHHHHHHHHHC-CC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEE
T ss_pred eEEEEEeCC------C-CEEEEEECCCChHHHHHHHHHHHHC-cC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 777777665 3 4678899888999999999988652 11 123466678988754 3557899999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 80 ~r~~GG 85 (88)
T 1sif_A 80 LRLRGG 85 (88)
T ss_dssp C-----
T ss_pred EeCCCC
Confidence 888887
No 40
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.81 E-value=0.014 Score=34.49 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=52.7
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
+.|+|.|+... | ....++++...|+.+|.+.+..... +. ....++..+|+.... ++-+++|+.|.
T Consensus 3 ~~m~i~Vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~g-ip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~ 72 (79)
T 3phx_B 3 EPLSILVRNNK------G-RSSTYEVRLTQTVAHLKQQVSGLEG-VQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 72 (79)
T ss_dssp CCEEEEEECTT------S-CEEEEEECTTSBHHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEE
T ss_pred CCEEEEEEeCC------C-CEEEEEECCcChHHHHHHHHHhhcC-CC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEE
Confidence 45889988653 3 4678899888999999999987642 11 123466779988764 45688899999
Q ss_pred EEcCCCC
Q 034057 98 IIPPISG 104 (105)
Q Consensus 98 iiPPvsG 104 (105)
++-+.-|
T Consensus 73 l~~rl~G 79 (79)
T 3phx_B 73 MNLRLRG 79 (79)
T ss_dssp EEECCBC
T ss_pred EEEecCC
Confidence 9877655
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.80 E-value=0.0077 Score=36.82 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=50.1
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVai 98 (105)
.|+|.|+... | ....++++...|+.+|...+..... +. ....++..+|+....+ +-+++|+.|.+
T Consensus 4 ~m~I~Vk~~~------g-~~~~~~v~~~~TV~~LK~~I~~~~g-ip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l 73 (88)
T 2hj8_A 4 PLSILVRNNK------G-RSSTYEVRLTQTVAHLKQQVSGLEG-VQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFM 73 (88)
T ss_dssp EEEEEEEETT------S-CEEEEEEESSSBHHHHHHHHHHHTC-SC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEE
T ss_pred cEEEEEECCC------C-CEEEEEECCCCcHHHHHHHHHHHhC-CC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence 5889888763 4 4667888888999999999988752 21 1234566788877654 45679999999
Q ss_pred EcCCCCC
Q 034057 99 IPPISGG 105 (105)
Q Consensus 99 iPPvsGG 105 (105)
+-...||
T Consensus 74 ~~~~~gg 80 (88)
T 2hj8_A 74 NLRLRGG 80 (88)
T ss_dssp EEC----
T ss_pred EEEcCCC
Confidence 8877776
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.74 E-value=0.011 Score=36.46 Aligned_cols=74 Identities=8% Similarity=0.050 Sum_probs=53.1
Q ss_pred CCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCE
Q 034057 21 KESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDE 95 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDe 95 (105)
....|+|+|+.. | ....++++...||.+|.+.+.+... +.. ...++..+|+....+ +-+++|+.
T Consensus 14 ~~~~m~i~Vk~~-------g-~~~~~~v~~~~TV~~LK~~I~~~~g-ip~--~~qrL~~~Gk~L~D~~tL~~~gi~~g~~ 82 (96)
T 1wx8_A 14 SSRIIRVSVKTP-------Q-DCHEFFLAENSNVRRFKKQISKYLH-CNA--DRLVLIFTGKILRDQDILSQRGILDGST 82 (96)
T ss_dssp CSCEEEEEEECS-------S-SEEEEEEETTCCHHHHHHHHHHHTC-SCT--TTBCCEETTEECCTTSCHHHHTCCTTEE
T ss_pred CCCcEEEEEEEC-------C-eEEEEEECCCCCHHHHHHHHHHHhC-CCH--HHEEEEECCEECCCcCCHHHCCCCCCCE
Confidence 446688888875 4 3567888888999999999998762 211 223455688887643 45789999
Q ss_pred EEEEcCCCCC
Q 034057 96 LAIIPPISGG 105 (105)
Q Consensus 96 VaiiPPvsGG 105 (105)
|.++-...||
T Consensus 83 i~l~~~~~~g 92 (96)
T 1wx8_A 83 VHVVVRSHSG 92 (96)
T ss_dssp EECCBCCSSC
T ss_pred EEEEEeCCCC
Confidence 9888777665
No 43
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.65 E-value=0.011 Score=36.85 Aligned_cols=75 Identities=12% Similarity=0.206 Sum_probs=55.9
Q ss_pred CCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCE
Q 034057 21 KESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDE 95 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDe 95 (105)
....|+|+|+.. .| ....+++....|+.+|.+.+..+.. +. ....++..+|+.+..+ +-+.+||.
T Consensus 18 ~~~~m~I~Vk~~------~g-~~~~l~v~~~~tv~~lK~~i~~~~g-ip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~ 87 (97)
T 1wyw_B 18 EGEYIKLKVIGQ------DS-SEIHFKVKMTTHLKKLKESYCQRQG-VP--MNSLRFLFEGQRIADNHTPKELGMEEEDV 87 (97)
T ss_dssp -CCEEEEEEECT------TC-CEEEEEEETTSCTHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTCCHHHHTCCTTCE
T ss_pred CCCcEEEEEEeC------CC-CEEEEEECCCCcHHHHHHHHHHHHC-CC--hhhEEEEECCeEcCCCCCHHHCCCCCCCE
Confidence 445588888854 34 4678888888999999999987652 11 1346777899988653 46789999
Q ss_pred EEEEcCCCCC
Q 034057 96 LAIIPPISGG 105 (105)
Q Consensus 96 VaiiPPvsGG 105 (105)
|.++-..-||
T Consensus 88 I~l~~~~~GG 97 (97)
T 1wyw_B 88 IEVYQEQTGG 97 (97)
T ss_dssp EEEEESSSCC
T ss_pred EEEEEecCCC
Confidence 9999998888
No 44
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.63 E-value=0.0094 Score=35.33 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=53.3
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVai 98 (105)
.|+|+|+.. .| +...+++....|+.+|.+.+.++.. +. .+..++.-+|+....+ +-+.+||.|.+
T Consensus 3 ~m~i~vk~~------~g-~~~~~~v~~~~tv~~lk~~i~~~~g-i~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 3 YIKLKVIGQ------DS-SEIHFKVKMTTHLKKLKESYCQRQG-VP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEV 72 (79)
T ss_dssp EEEEEEECT------TC-CEEEEEEETTSCTHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEE
T ss_pred eEEEEEECC------CC-CEEEEEECCCChHHHHHHHHHHHHC-CC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEE
Confidence 478888753 34 4678888888999999999987642 21 1345677899988654 46779999999
Q ss_pred EcCCCCC
Q 034057 99 IPPISGG 105 (105)
Q Consensus 99 iPPvsGG 105 (105)
+...-||
T Consensus 73 ~~~~~GG 79 (79)
T 2uyz_B 73 YQEQTGG 79 (79)
T ss_dssp EECCCC-
T ss_pred EEeccCC
Confidence 9998887
No 45
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.63 E-value=0.029 Score=35.22 Aligned_cols=76 Identities=11% Similarity=0.030 Sum_probs=52.1
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC------CccCCCCEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS------VIVNEKDELA 97 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d------~~L~dGDeVa 97 (105)
.|+|+|+....- .......++++...||.+|.+.|..... +.. +...+..+|+....+ +-|++|+.|.
T Consensus 7 ~m~I~Vk~~~~~---~~~~~~~i~v~~~~TV~~LK~~I~~~~g-ip~--~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 7 GMLITVYCVRRD---LTEVTFSLQVNPDFELSNFRVLCELESG-VPA--EEAQIVYMEQLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp CEEEEEEECCCC---CCCCEEEEEECTTCBHHHHHHHHHHHTC-CCG--GGBCEEETTEEECCSSSBHHHHTCCTTEEEE
T ss_pred eEEEEEEECCCC---cCceEEEEEcCCCCCHHHHHHHHHHHHC-cCh--HHeEEEECCEECCCCcccHHHCCCCCCCEEE
Confidence 388888875211 1124667899888999999999998753 211 233556788877544 3477999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++-...||
T Consensus 81 l~~~~~gg 88 (102)
T 1v5o_A 81 LLQKDNVG 88 (102)
T ss_dssp ECBCCCCC
T ss_pred EEECCCCC
Confidence 98766665
No 46
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.58 E-value=0.026 Score=34.66 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=53.9
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC-CchhhcceeEEEECCeecCC-----CC--ccCCC
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP-NLEEIRGCMVLALNEEYTNA-----SV--IVNEK 93 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p-~l~~~~~~~~vaVNg~~v~~-----d~--~L~dG 93 (105)
.+.|+|+|+....- .....++++...||.+|.+.|.+..| ++.. +..++..+|+.... ++ .+++|
T Consensus 5 ~~~m~i~Vk~~~~~-----~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~--~~QrLi~~Gk~L~D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 5 SSGVTLLVKSPNQR-----HRDLELSGDRGWSVGHLKAHLSRVYPERPRP--EDQRLIYSGKLLLDHQCLRDLLPKQEKR 77 (93)
T ss_dssp SCCCEEEEECSSSS-----CCCEEEECCTTSCHHHHHHHHHHHSTTCCCT--TTCEEEETTEECCSSSCHHHHSCSSSCS
T ss_pred CcEEEEEEEeCCCC-----eEEEEEecCCCCcHHHHHHHHHHHhcCCCCh--HHeEEEECCEECcCcCCHHHHhcCCCCC
Confidence 34589999976320 12567777788999999999999863 3321 23456678988754 34 67899
Q ss_pred CEEEEEcCCCCC
Q 034057 94 DELAIIPPISGG 105 (105)
Q Consensus 94 DeVaiiPPvsGG 105 (105)
+.|.++-+.-||
T Consensus 78 ~~i~lv~~~~gg 89 (93)
T 1wgd_A 78 HVLHLVCNVKSG 89 (93)
T ss_dssp EEEEEECCCCCC
T ss_pred CEEEEEeCCCCC
Confidence 999998766665
No 47
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.58 E-value=0.033 Score=36.55 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=54.3
Q ss_pred CccccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCc
Q 034057 15 SALVDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVI 89 (105)
Q Consensus 15 ~~~~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~ 89 (105)
|.-.+.....|+|+|+.. | ....++++...||.+|...|..... +. ....++..+|+.... ++-
T Consensus 23 s~~~~~~~~~m~I~Vk~~-------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~L~D~~tL~dyg 91 (125)
T 1j8c_A 23 SAAAPAEPKIIKVTVKTP-------K-EKEEFAVPENSSVQQFKEAISKRFK-SQ--TDQLVLIFAGKILKDQDTLIQHG 91 (125)
T ss_dssp SSSCCCCCCCEEEEEECS-------S-CEEEEEECTTCCHHHHHHHHHHHHC-SC--SSSEEEEETTEEESTTSCGGGTT
T ss_pred CCcccCCCCcEEEEEEeC-------C-eEEEEEECCCCcHHHHHHHHHHHHC-cC--cceEEEEECCEEcCCCCCHHHcC
Confidence 344444556799999885 3 3578889888999999999988652 11 133466678888754 456
Q ss_pred cCCCCEEEEEcCCCCC
Q 034057 90 VNEKDELAIIPPISGG 105 (105)
Q Consensus 90 L~dGDeVaiiPPvsGG 105 (105)
|++|+.|.++-...||
T Consensus 92 I~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 92 IHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CSSSEEEEEEEC----
T ss_pred CCCCCEEEEEeccCCC
Confidence 7899999988766665
No 48
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.52 E-value=0.023 Score=35.82 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=55.4
Q ss_pred cccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccC
Q 034057 17 LVDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVN 91 (105)
Q Consensus 17 ~~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~ 91 (105)
=..+.+..|+|+|+... |+ ..++++...||.+|.+.|.+... +. ....++..+|+....+ +-|+
T Consensus 10 ~~~~~~~~m~I~Vk~~~------g~--~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~~gi~ 78 (106)
T 1wx7_A 10 APVQDPHLIKVTVKTPK------DK--EDFSVTDTCTIQQLKEEISQRFK-AH--PDQLVLIFAGKILKDPDSLAQCGVR 78 (106)
T ss_dssp SCCCCSSEEEEEEECSS------CE--EEEEEETTCCHHHHHHHHHHHHT-CC--TTTEEEEETTEECCTTSCHHHHTCC
T ss_pred CCCCCCceEEEEEEeCC------Cc--EEEEECCCCcHHHHHHHHHHHHC-cC--hhhEEEEECCEECCCcCcHHHcCCC
Confidence 34455677999999854 32 47788888999999999987652 11 1235667789888654 4577
Q ss_pred CCCEEEEEcCCCCC
Q 034057 92 EKDELAIIPPISGG 105 (105)
Q Consensus 92 dGDeVaiiPPvsGG 105 (105)
+|+.|.++-...||
T Consensus 79 ~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 79 DGLTVHLVIKRQHR 92 (106)
T ss_dssp TTEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCC
Confidence 99999998766554
No 49
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.43 E-value=0.06 Score=32.01 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=49.0
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC--CCchhhcceeEEEECCeecCC-----CCccCCCC
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF--PNLEEIRGCMVLALNEEYTNA-----SVIVNEKD 94 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~--p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGD 94 (105)
+.+|+|+|+... | ....++++...|+.+|.+.+...+ .++. .+..++..+|+.... ++-+.+|+
T Consensus 3 ~~~m~i~vk~~~------g-~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~ 73 (85)
T 2wyq_A 3 PMAVTITLKTLQ------Q-QTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN 73 (85)
T ss_dssp -CCEEEEEEETT------S-CEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTS
T ss_pred CceEEEEEEECC------C-CEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCC
Confidence 356889988763 3 356889988899999999999862 2222 123456678988764 35677999
Q ss_pred EEEEE
Q 034057 95 ELAII 99 (105)
Q Consensus 95 eVaii 99 (105)
.|.++
T Consensus 74 ~i~l~ 78 (85)
T 2wyq_A 74 FVVVM 78 (85)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98876
No 50
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=96.42 E-value=0.032 Score=34.84 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=53.3
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDEL 96 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeV 96 (105)
...|.|+|+- ..| ....+.+....++..|++..+++.. +. ...+++.-+|+.+.. +.-+.+||.|
T Consensus 15 ~~~i~ikV~~------~~g-~~i~~~v~~~t~l~kl~~~y~~~~g-i~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~I 84 (93)
T 2d07_B 15 NDHINLKVAG------QDG-SVVQFKIKRHTPLSKLMKAYCERQG-LS--MRQIRFRFDGQPINETDTPAQLEMEDEDTI 84 (93)
T ss_dssp CCEEEEEEEC------TTS-CEEEEEEETTSCHHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCeEEEEEEC------CCC-CEEEEEEccCCHHHHHHHHHHHHhC-CC--ccceEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 3457777662 234 4678888888999999999988753 21 246788899999863 4679999999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
.++.--.||
T Consensus 85 dv~~~q~GG 93 (93)
T 2d07_B 85 DVFQQQTGG 93 (93)
T ss_dssp EEEECC---
T ss_pred EEEeeccCC
Confidence 999988887
No 51
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.032 Score=32.85 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=49.3
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVa 97 (105)
..|+|+|+... | ....++++...|+.+|.+.+.+... +. .....+..+|+....+ +-+++|+.|.
T Consensus 6 ~~m~i~vk~~~------g-~~~~~~v~~~~tV~~LK~~i~~~~~-i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~ 75 (81)
T 2dzi_A 6 SGMQLTVKALQ------G-RECSLQVPEDELVSTLKQLVSEKLN-VP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLN 75 (81)
T ss_dssp SSEEEEEEETT------S-CEEEEEECSSCBHHHHHHHHHHHTC-CC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCE
T ss_pred CcEEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-cC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEE
Confidence 45899998642 4 4667889888999999999988762 21 1234566789887643 4567899888
Q ss_pred EEcC
Q 034057 98 IIPP 101 (105)
Q Consensus 98 iiPP 101 (105)
++..
T Consensus 76 l~~~ 79 (81)
T 2dzi_A 76 LVVK 79 (81)
T ss_dssp EECC
T ss_pred EEEe
Confidence 7654
No 52
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.39 E-value=0.023 Score=35.66 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=55.2
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDEL 96 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeV 96 (105)
...|+|+|+- ..| ++..+.+....++..|++..+++.. +. ...+++.-+|+.+.. |.-+.+||.|
T Consensus 5 ~~~i~ikVk~------~~g-~~i~~~v~~~t~l~kl~~~y~~~~g-i~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 5 NDHINLKVAG------QDG-SVVQFKIKRHTPLSKLMKAYCERQG-LS--MRQIRFRFDGQPINETDTPAQLEMEDEDTI 74 (94)
T ss_dssp -CEEEEEEEC------TTS-CEEEEEEETTSCTHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTCCTTTTTCCTTCEE
T ss_pred CCeEEEEEEC------CCC-CEEEEEECCCCHHHHHHHHHHHHhC-CC--cccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 3457777763 234 4688899888999999999988753 21 245788889999864 5679999999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
.++.--.||
T Consensus 75 dv~~~~~GG 83 (94)
T 2io1_B 75 DVFQQQTGG 83 (94)
T ss_dssp EEEECCEES
T ss_pred EEEEeccCC
Confidence 999877666
No 53
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=96.39 E-value=0.037 Score=34.52 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=54.5
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai 98 (105)
.|.|+|+- ..| +...+.+...+++..|.+..+++.. +. ...+++.-+|+.+.. |.-+.+||.|.+
T Consensus 5 ~i~ikVk~------~~g-~~v~~~vk~~t~l~kl~~~y~~~~g-i~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv 74 (91)
T 2io0_B 5 HINLKVAG------QDG-SVVQFKIKRHTPLSKLMKAYCERQG-LS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDV 74 (91)
T ss_dssp EEEEEEEC------TTS-CEEEEEEETTSCTHHHHHHHHHHTT-CC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred eEEEEEEC------CCC-CEEEEEECCCChHHHHHHHHHHHhC-CC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 46666662 234 4788899888999999999988752 22 245788889999864 467999999999
Q ss_pred EcCCCCC
Q 034057 99 IPPISGG 105 (105)
Q Consensus 99 iPPvsGG 105 (105)
+.--.||
T Consensus 75 ~~~q~gg 81 (91)
T 2io0_B 75 FQQQTGG 81 (91)
T ss_dssp EECCCCC
T ss_pred EEeccCC
Confidence 9877776
No 54
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.33 E-value=0.03 Score=35.18 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=52.9
Q ss_pred CCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCE
Q 034057 21 KESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDE 95 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDe 95 (105)
.+..|+|+|+..+ |+ ..++++...||.+|.+.+.+... +. ....++..+|+....+ +-+++|+.
T Consensus 19 ~~~~m~I~Vk~~~------g~--~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gst 87 (100)
T 1yqb_A 19 SPHLIKVTVKTPK------DK--EDFSVTDTCTIQQLKEEISQRFK-AH--PDQLVLIFAGKILKDPDSLAQCGVRDGLT 87 (100)
T ss_dssp CTTEEEEEEECSS------CE--EEEEEETTCBHHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTSBHHHHTCCTTCE
T ss_pred CCCeEEEEEEcCC------Cc--EEEEECCCCcHHHHHHHHHHHHC-cC--hhhEEEEECCEECCCcCcHHHCCCCCCCE
Confidence 3455899998854 32 47788888999999999988652 21 1334667789888654 45779999
Q ss_pred EEEEcCCCCC
Q 034057 96 LAIIPPISGG 105 (105)
Q Consensus 96 VaiiPPvsGG 105 (105)
|.++-...||
T Consensus 88 I~l~~r~~~~ 97 (100)
T 1yqb_A 88 VHLVIKRQHR 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEEcCCCC
Confidence 9998766654
No 55
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.33 E-value=0.037 Score=33.73 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=50.5
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDEL 96 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeV 96 (105)
+..|+|+|+... | ....++++...||.+|.+.+.+... +. ....++..+|+.... ++-+.+|+.|
T Consensus 15 ~~~m~i~Vk~~~------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 15 RGSMQIFVNTLT------G-THITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 84 (91)
T ss_dssp CCSEEEEEECTT------S-CEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGCEEEETTEECCTTCBTGGGTCCTTCEE
T ss_pred CCeEEEEEEeCC------C-CEEEEEECCCCCHHHHHHHHHhhhC-CC--hhhEEEEECCeECCCcCcHHHCCCCCCCEE
Confidence 445889888653 3 4678899888999999999988652 11 123456678988764 4568889999
Q ss_pred EEEcC
Q 034057 97 AIIPP 101 (105)
Q Consensus 97 aiiPP 101 (105)
.++-.
T Consensus 85 ~l~~r 89 (91)
T 3v6c_B 85 HLVLR 89 (91)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 88743
No 56
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=96.29 E-value=0.0079 Score=38.25 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=39.7
Q ss_pred eEEEe-CCCCCHHHHHHHHHHhCCCchhhcceeEEEE--------CCeecCCCCccCCCCEEEEEcC
Q 034057 44 MPLEV-SCGSTTQDCLNKLIARFPNLEEIRGCMVLAL--------NEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 44 ~~vev-~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV--------Ng~~v~~d~~L~dGDeVaiiPP 101 (105)
..+.+ +.+.|+.|+...+-.. +. +.+.-|+ |++.|+.++.|++||.|.|+.-
T Consensus 27 dpviL~~~GsTv~Dfa~~IH~d---i~---~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 27 SPVVLPYSRTTVEDFCMKIHKN---LI---KEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp SCEEEETTSCCHHHHHHHHCTT---CT---TTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred CCEEEecCCCCHHHHHHHHHHH---HH---hhccEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 45778 8999999998877533 33 2233333 8999999999999999999864
No 57
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.28 E-value=0.012 Score=37.94 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=51.9
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC--Cchh----------hcceeEEEECCeecC-C--
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP--NLEE----------IRGCMVLALNEEYTN-A-- 86 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p--~l~~----------~~~~~~vaVNg~~v~-~-- 86 (105)
+..|+|+|+- ..| ...+++++...||.+|.+.+.+... .-.. +.....+.-+|+... .
T Consensus 5 ~~~M~I~Vk~------l~g-~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~ 77 (105)
T 1v2y_A 5 SSGMTVRVCK------MDG-EVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRK 77 (105)
T ss_dssp CCSEEEEEEC------SSS-CEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSS
T ss_pred CCcEEEEEEe------cCC-CEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcC
Confidence 4459999984 224 5789999999999999999987651 1000 012234446787764 2
Q ss_pred ---CCccCCCCEEEEEcCCCC
Q 034057 87 ---SVIVNEKDELAIIPPISG 104 (105)
Q Consensus 87 ---d~~L~dGDeVaiiPPvsG 104 (105)
|+-|++|+.|.|+....|
T Consensus 78 tL~dygI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 78 KLRDYGIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp BHHHHTCCSSEEEEEEECSCS
T ss_pred CHHHcCCCCCCEEEEEehhcc
Confidence 347889999999987655
No 58
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.26 E-value=0.067 Score=33.15 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=55.2
Q ss_pred ccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-C-----ccC
Q 034057 18 VDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-V-----IVN 91 (105)
Q Consensus 18 ~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-~-----~L~ 91 (105)
+-.....|+|.|+..+ | ...++++...||.+|.+.|..... +. .+..++..+|+....+ . -++
T Consensus 9 ~~~~~~~~~I~Vk~~~------~--~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~L~D~~~tL~~ygI~ 77 (94)
T 2kan_A 9 SHAAVRKIHVTVKFPS------K--QFTVEVDRTETVSSLKDKIHIVEN-TP--IKRMQLYYSGIELADDYRNLNEYGIT 77 (94)
T ss_dssp SCSSSCCEEEEEECSS------C--EEEEEECTTCBHHHHHHHHHHHSS-SC--TTTEEEEETTEEECCTTSBHHHHTCC
T ss_pred cccCCCCEEEEEEcCC------c--EEEEEECCCCcHHHHHHHHHHHHC-cC--HHHEEEEECCEECCCCcccHHHCCCC
Confidence 3445566999998643 2 567888888999999999998752 21 1234566788887655 3 467
Q ss_pred CCCEEEEEcCCCCC
Q 034057 92 EKDELAIIPPISGG 105 (105)
Q Consensus 92 dGDeVaiiPPvsGG 105 (105)
+|+.|.++-...||
T Consensus 78 ~gstl~lv~r~~gg 91 (94)
T 2kan_A 78 EFSEIVVFLKSINR 91 (94)
T ss_dssp TTEEEEEEECCCSS
T ss_pred CCCEEEEEEeCCCC
Confidence 99999888777776
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.23 E-value=0.041 Score=37.33 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=53.8
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCC
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKD 94 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGD 94 (105)
..+.+|+|+|+.+. | +...++++...||.+|.+.+..... +. ...-.+..+|+.... ++-+.+|+
T Consensus 16 ~~~~~m~i~Vk~~~------g-~~~~l~v~~~~tV~~lK~~I~~~~g-ip--~~~QrL~~~g~~L~d~~tL~~~~i~~~~ 85 (172)
T 3u30_A 16 PRGSHMQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKES 85 (172)
T ss_dssp ---CCEEEEEEETT------T-EEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTCBTGGGTCCTTC
T ss_pred CCCCcEEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-cC--hHHEEEEECCccccccCCHhHcCCcccc
Confidence 44566999998753 3 4678899888999999999988652 11 122355678887754 46688999
Q ss_pred EEEEEcCCCCC
Q 034057 95 ELAIIPPISGG 105 (105)
Q Consensus 95 eVaiiPPvsGG 105 (105)
.|.++-...||
T Consensus 86 ~l~l~~~~~gg 96 (172)
T 3u30_A 86 TLHLVLRLRGG 96 (172)
T ss_dssp EEEEEECCCCC
T ss_pred eeeeeeccccc
Confidence 99998777665
No 60
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.23 E-value=0.044 Score=31.88 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=47.5
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVa 97 (105)
++|+|+|+. . | ....++++...|+.+|...+..... +. .....+..+|+....+ +-+++|+.|.
T Consensus 3 M~m~i~vk~-~------g-~~~~~~v~~~~tV~~LK~~i~~~~~-i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~ 71 (77)
T 2bwf_A 3 MSLNIHIKS-G------Q-DKWEVNVAPESTVLQFKEAINKANG-IP--VANQRLIYSGKILKDDQTVESYHIQDGHSVH 71 (77)
T ss_dssp EEEEEEEEE-T------T-EEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEE
T ss_pred eEEEEEEEE-C------C-EEEEEEECCCCcHHHHHHHHHHHhC-CC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEE
Confidence 447777775 2 3 3578889888999999999987652 21 1345667889887643 4567999998
Q ss_pred EEc
Q 034057 98 IIP 100 (105)
Q Consensus 98 iiP 100 (105)
++.
T Consensus 72 l~~ 74 (77)
T 2bwf_A 72 LVK 74 (77)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 61
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.12 E-value=0.033 Score=34.24 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=48.7
Q ss_pred CCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC------CccCCCC
Q 034057 21 KESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS------VIVNEKD 94 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d------~~L~dGD 94 (105)
++..|+|+|+... | ....++++...||.+|.+.+....| ...++..+|+....+ +-+.+|+
T Consensus 4 ~~~~m~i~Vk~~~------g-~~~~~~v~~~~TV~~LK~~i~~~~~------~~qrLi~~Gk~L~D~~~tL~~y~i~~g~ 70 (95)
T 1wia_A 4 GSSGINVRLKFLN------D-TEELAVARPEDTVGTLKSKYFPGQE------SQMKLIYQGRLLQDPARTLSSLNITNNC 70 (95)
T ss_dssp CCCSEEEEEEETT------T-EEEEEEECSSSBHHHHHHHHSSSTT------TTCEEEETTEECCCSSCBTTTTTCCTTE
T ss_pred CCCeEEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHhhCc------CcEEEEECCEEccCCcCCHHHcCCCCCC
Confidence 4556999998642 3 3567888888999999999987652 234556788877544 4577999
Q ss_pred EEEEEc
Q 034057 95 ELAIIP 100 (105)
Q Consensus 95 eVaiiP 100 (105)
.|.++-
T Consensus 71 ~i~l~~ 76 (95)
T 1wia_A 71 VIHCHR 76 (95)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 998874
No 62
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=96.11 E-value=0.058 Score=34.07 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=47.6
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEE--EeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCcc-C
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPL--EVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIV-N 91 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~v--ev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L-~ 91 (105)
...++|+|+|+... |. ...+ +++...|+.+|.+.|.+..+++.. +..++..+|+.... ++-+ +
T Consensus 15 ~~~~~m~I~VKtl~------g~-~~~i~v~v~~~~TV~~lK~~I~~~~~gip~--~~QrLi~~Gk~L~D~~tL~dy~I~~ 85 (98)
T 4a20_A 15 MDNAAVHLTLKKIQ------AP-KFSIEHDFSPSDTILQIKQHLISEEKASHI--SEIKLLLKGKVLHDNLFLSDLKVTP 85 (98)
T ss_dssp ---CCEEEEEEECS------SS-CEEEEEEECTTCBHHHHHHHHHHTTSCSCG--GGEEEEETTEEECTTCBGGGSCCBT
T ss_pred CCCCCEEEEEEcCC------CC-EEEEEEecCCCChHHHHHHHHHHHhcCCCh--hhEEEEECCEECcCcCCHHHcCcCC
Confidence 35567999998754 32 3444 666889999999999444444321 33466678988764 4678 8
Q ss_pred CCCEEEEE
Q 034057 92 EKDELAII 99 (105)
Q Consensus 92 dGDeVaii 99 (105)
+|+.|.++
T Consensus 86 ~g~ti~lm 93 (98)
T 4a20_A 86 ANSTITVM 93 (98)
T ss_dssp TBCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 63
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=95.99 E-value=0.063 Score=32.43 Aligned_cols=69 Identities=9% Similarity=0.083 Sum_probs=48.6
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDEL 96 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeV 96 (105)
+.+|+|+|+... | ....++++...||.+|.+.+.+... +. ....++..+|+....+ +-+ +|+.|
T Consensus 3 ~~~m~i~Vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~g-ip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLD------S-QTRTFIVGAQMNVKEFKEHIAASVS-IP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVI 71 (90)
T ss_dssp CCEEEEEEEETT------C-CEEEEEEETTCBHHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTSBGGGGTC-TTEEE
T ss_pred CcEEEEEEEcCC------C-CEEEEEECCCCCHHHHHHHHHHHhC-CC--HHHEEEEECCeECCCCCCHHHcCC-CCcEE
Confidence 456999998763 3 4678888888999999999988752 11 1234566799887654 456 68888
Q ss_pred EEEcC
Q 034057 97 AIIPP 101 (105)
Q Consensus 97 aiiPP 101 (105)
.++-.
T Consensus 72 ~l~~~ 76 (90)
T 4dwf_A 72 HLVER 76 (90)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77643
No 64
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.94 E-value=0.071 Score=33.84 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=54.7
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCC-CCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSC-GSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDE 95 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~-~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDe 95 (105)
+..|+|+|+....- .| ....++++. ..||.+|...|..... +.. ....+..+|+.... ++-+.+|+.
T Consensus 25 ~~~i~i~Vk~~~~~---~g-~~~~l~v~~l~~TV~~LK~~I~~~~g-ip~--~~QrL~~~Gk~L~D~~tL~~y~I~~g~~ 97 (111)
T 1we6_A 25 PGPATIRVSKPNEN---DG-QFMEITVQSLSENVGSLKEKIAGEIQ-IPA--NKQKLSGKAGFLKDNMSLAHYNVGAGEI 97 (111)
T ss_dssp CSCEEEEECCTTCS---SS-CCEEEEESCSSSBHHHHHHHHHHHTT-CCT--TTSEEECSSSBCCTTSBTTTTTCSSSCE
T ss_pred CCcEEEEEEecccC---CC-cEEEEEecCCCCcHHHHHHHHHHHHC-CCH--HHeEEEECCEECCCCCcHHHCCCCCCCE
Confidence 34588998876211 24 467899987 8999999999998752 211 22345568877653 466779999
Q ss_pred EEEEcCCCCC
Q 034057 96 LAIIPPISGG 105 (105)
Q Consensus 96 VaiiPPvsGG 105 (105)
|.++-..-||
T Consensus 98 l~l~~r~~GG 107 (111)
T 1we6_A 98 LTLSLRERSG 107 (111)
T ss_dssp EEEECSSCCS
T ss_pred EEEEEEcCCC
Confidence 9999888887
No 65
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.86 E-value=0.059 Score=33.98 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=50.9
Q ss_pred ccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCC
Q 034057 18 VDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNE 92 (105)
Q Consensus 18 ~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~d 92 (105)
..+....|+|+|+..+ | +...++++...||.+|...|..... +. ....++..+|+.... ++-+.+
T Consensus 17 ~~~~~~~m~I~Vk~~~------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~ygI~~ 86 (106)
T 1ttn_A 17 PPNSGYECQLRLRLST------G-KDLKLVVRSTDTVFHMKRRLHAAEG-VE--PGSQRWFFSGRPLTDKMKFEELKIPK 86 (106)
T ss_dssp ----CCSEEEEEEETT------T-EEEEEEECTTSHHHHHHHHHHHTTC-CC--STTCEEEETTEECCTTSHHHHCCCSS
T ss_pred CCCCCCeEEEEEEcCC------C-CEEEEEeCCCCcHHHHHHHHHHHHC-cC--cccEEEEECCEECCCCCcHHHcCCCC
Confidence 4455667999999864 3 4567889888999999999988752 21 123456678988864 356789
Q ss_pred CCEEEEEc
Q 034057 93 KDELAIIP 100 (105)
Q Consensus 93 GDeVaiiP 100 (105)
|+.|.++-
T Consensus 87 g~ti~lv~ 94 (106)
T 1ttn_A 87 DYVVQVIV 94 (106)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEE
Confidence 99998764
No 66
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=95.85 E-value=0.06 Score=36.99 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=52.4
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+... | +...++++...|+.+|.+.+..... +. .+..++..+|+.... +.-+++|+.|.++
T Consensus 1 MqI~Vk~~~------G-k~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKSKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp CEEEEEETT------S-CEEEEECCTTCBHHHHHHHHHHHHC-CC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEEeCC------C-CEEEEEeCCCCCHHHHHHHHHHHHC-cC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEE
Confidence 678887642 4 4678899888999999999988652 11 123466778988764 4568899999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
-..-||
T Consensus 71 lrl~GG 76 (169)
T 3l0w_B 71 LRLRGG 76 (169)
T ss_dssp ECCCC-
T ss_pred EEeccc
Confidence 888776
No 67
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.85 E-value=0.087 Score=32.44 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=47.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC--CCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF--PNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~--p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
|+|+|+... | ....++++...||.+|.+.+...+ .++. ....++..+|+.... ++-+.+|+.|.
T Consensus 1 M~I~Vk~~~------g-~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~ 71 (95)
T 1uel_A 1 MQVTLKTLQ------Q-QTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVV 71 (95)
T ss_dssp CEEEEEETT------C-CEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEE
T ss_pred CEEEEEeCC------C-CEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEE
Confidence 677887652 3 367889988899999999999873 1221 123466778988764 35677999997
Q ss_pred EE
Q 034057 98 II 99 (105)
Q Consensus 98 ii 99 (105)
++
T Consensus 72 l~ 73 (95)
T 1uel_A 72 VM 73 (95)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 68
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.056 Score=34.18 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=47.3
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|+|+.+. | ....++++...||.+|.+.+..... +.. ...++..+|+.... ++-|++|+.|.++
T Consensus 2 m~I~Vk~~~------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip~--~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFK------K-EKVPLDLEPSNTILETKTKLAQSIS-CEE--SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp -CEEEECTT------C-CEEEECCCTTSBHHHHHHHHHHTTT-SCG--GGCEEEETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-CCh--hhEEEEECCEECCCcCCHHHcCCCCCCEEEEE
Confidence 778888543 3 4678888888999999999998763 211 23456678988754 5678899999887
No 69
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=95.81 E-value=0.11 Score=33.43 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=53.7
Q ss_pred CCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCE
Q 034057 21 KESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDE 95 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDe 95 (105)
....|.|+|+. .| ....+.+...+++..|++..+++.. +. ...+++.-+|+.+.. +.-+.+||.
T Consensus 28 ~~~~I~IkV~~-------~g-~~i~fkIk~tt~l~kL~~ay~ek~g-i~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~ 96 (106)
T 2eke_C 28 PETHINLKVSD-------GS-SEIFFKIKKTTPLRRLMEAFAKRQG-KE--MDSLRFLYDGIRIQADQTPEDLDMEDNDI 96 (106)
T ss_dssp CCSEEEEEEEC-------SS-CEEEEEEETTSCTHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTCCTTTTTCCTTEE
T ss_pred CCCeEEEEEec-------CC-cEEEEEeCCCCHHHHHHHHHHHHhC-CC--cccEEEEECCeEcCCCCCHHHcCCCCCCE
Confidence 34457777763 24 4678889888999999999988753 21 246788889999863 467999999
Q ss_pred EEEEcCCCCC
Q 034057 96 LAIIPPISGG 105 (105)
Q Consensus 96 VaiiPPvsGG 105 (105)
|.++.--.||
T Consensus 97 Idv~~~q~GG 106 (106)
T 2eke_C 97 IEAHREQIGG 106 (106)
T ss_dssp EEEEECC---
T ss_pred EEEEeecccC
Confidence 9999888887
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.76 E-value=0.14 Score=33.34 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=51.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|.|.|+.+ .| ....++++...|+.+|.+.+..... +. .+...+..+|+.... ++-+++|+.|.++
T Consensus 77 ~~i~Vk~~------~g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 77 MQIFVKTL------TG-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp EEEEEEES------SS-CEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred cceeeeec------CC-CEEEEEeCCCCcHHHHHHHHHHHhC-cC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 56666543 24 4678899888999999999988642 11 123456678988754 4567899999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 147 ~r~~GG 152 (152)
T 3b08_A 147 LRLRGG 152 (152)
T ss_dssp ECCCC-
T ss_pred EecCCC
Confidence 999888
No 71
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=95.74 E-value=0.057 Score=34.96 Aligned_cols=73 Identities=11% Similarity=0.276 Sum_probs=55.4
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVa 97 (105)
..|.|+|+- ..| ....+.+...+++..|++..+++.. +. ...+++..+|+.+..+ .-+.+||.|.
T Consensus 25 ~~I~IkVk~------~~g-~~i~fkVk~~t~l~kL~~ay~ek~g-i~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Id 94 (110)
T 2k8h_A 25 ALVAVKVVN------ADG-AEMFFRIKSRTALKKLIDTYCKKQG-IS--RNSVRFLFDGTPIDETKTPEELGMEDDDVID 94 (110)
T ss_dssp CCEEEEEEE------TTS-CCEEEEECTTSSHHHHHHHHHHHHT-CC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEE
T ss_pred CeEEEEEEC------CCC-CEEEEEECCCChHHHHHHHHHHHhC-CC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 447777763 234 4688999888999999999988642 21 2457888899998753 4699999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++..-.||
T Consensus 95 v~~~q~Gg 102 (110)
T 2k8h_A 95 AMVEQTGG 102 (110)
T ss_dssp EECCCCCC
T ss_pred EEEcccCc
Confidence 99998887
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.65 E-value=0.098 Score=34.79 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDEL 96 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeV 96 (105)
+..|+|.|+.. .| +...++++...|+.+|.+.+..... +. .+...+..+|+.... ++-+++|+.|
T Consensus 79 ~~~m~i~vk~~------~g-~~~~~~v~~~~tV~~lK~~i~~~~g-ip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 79 DEPLSILVRNN------KG-RSSTYEVRLTQTVAHLKQQVSGLEG-VQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 148 (159)
T ss_dssp CCCEEEEEECT------TS-CEEEEEECTTSBHHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCcEEEEEECC------CC-CEEEEEeCCCCCHHHHHHHHHHHHC-CC--HHHEEEEECCeecCCCCCHHHcCCCCCCEE
Confidence 34577776643 24 4678999988999999999987642 11 123456679988764 4678889999
Q ss_pred EEEcCCCCC
Q 034057 97 AIIPPISGG 105 (105)
Q Consensus 97 aiiPPvsGG 105 (105)
.++-..-||
T Consensus 149 ~l~~rl~GG 157 (159)
T 3rt3_B 149 FMNLRLRGG 157 (159)
T ss_dssp EEEECCC--
T ss_pred EEEEecCCC
Confidence 999777766
No 73
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=95.62 E-value=0.061 Score=37.92 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=52.9
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+... | ....++++...||.+|.+.|.+... +.. +...+..+|+.... +.-+++|+.|.++
T Consensus 106 MqI~VKtl~------G-kt~~l~V~~s~TV~~LK~kI~~~~g-Ip~--~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 106 GQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp EEEEEECTT------S-CEEEEEECTTCBHHHHHHHHHHHHC-CCG--GGCCEEETTEECCTTCBGGGGTCCTTCEEEEC
T ss_pred eeeeeecCC------C-CEEEEEeCCCCcHHHHHHHHHhccC-CCH--HHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 888888642 4 4678999888999999999987652 111 22345578888764 4568899999999
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 176 lrlrGG 181 (189)
T 3q3f_A 176 LRLRGG 181 (189)
T ss_dssp CCCCCC
T ss_pred EEcCCC
Confidence 888887
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.58 E-value=0.12 Score=33.73 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=50.5
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|+|+... | ....++++...|+.+|.+.+..... +. .....+..+|+.... ++-+.+|+.|.++
T Consensus 1 M~i~vk~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-ip--~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 1 MQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp CEEEEEETT------S-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CEEEEEeCC------C-CEEEEEECCCCCHHHHHHHHHHHHC-cC--hHHeEEEECCeECcCcccHHHhccCCCCeeEEE
Confidence 677877653 3 3678899888999999999988652 11 123456678887754 4567899999988
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
....||
T Consensus 71 ~~~~~~ 76 (152)
T 3b08_A 71 LRLRGG 76 (152)
T ss_dssp ECCTTC
T ss_pred eecccc
Confidence 766554
No 75
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.53 E-value=0.084 Score=32.03 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=49.0
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCee-cCCC-----CccCCCCEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEY-TNAS-----VIVNEKDEL 96 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~-v~~d-----~~L~dGDeV 96 (105)
+.|+|.|+.+. | +...++++...|+.+|.+.|..... +. .+..++..+|+. ...+ +-+++|+.|
T Consensus 9 ~~~~i~vk~l~------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 9 SHMKFLVENLN------G-SSFELEVDYRDTLLVVKQKIERSQH-IP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDI 78 (84)
T ss_dssp CCEEEEEEETT------S-CEEEEEECTTSBHHHHHHHHHHHHT-CC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCE
T ss_pred CceEEEEEecC------C-cEEEEEECCCChHHHHHHHHHHHHC-cC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEE
Confidence 46999998875 3 4678999988999999999988752 11 123466778988 6543 456789988
Q ss_pred EEE
Q 034057 97 AII 99 (105)
Q Consensus 97 aii 99 (105)
.++
T Consensus 79 ~lv 81 (84)
T 2kk8_A 79 QLE 81 (84)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 76
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.43 E-value=0.25 Score=30.86 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=50.5
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEE
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDEL 96 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeV 96 (105)
...|+|+|+.. | ....++++...||.+|.+.|..... +. .....+..+|+.... ++-+.+|+.|
T Consensus 23 ~~~m~I~Vk~~-------g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I 91 (101)
T 2klc_A 23 PKIMKVTVKTP-------K-EKEEFAVPENSSVQQFKEEISKRFK-SH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTV 91 (101)
T ss_dssp CCCEEEEEECS-------S-CEEEEEECSCCCHHHHHHHHHHHHT-CC--GGGEEEEETTEEECTTCCTGGGTCCTTCEE
T ss_pred CCeEEEEEEeC-------C-cEEEEEECCCCCHHHHHHHHHHHHC-cC--hhhEEEEECCEECCCcCcHHHcCCCCCCEE
Confidence 45699999875 3 2568889888999999999987652 11 123456678888754 4567799999
Q ss_pred EEEcCCC
Q 034057 97 AIIPPIS 103 (105)
Q Consensus 97 aiiPPvs 103 (105)
.++-...
T Consensus 92 ~l~~~~~ 98 (101)
T 2klc_A 92 HLVIKTQ 98 (101)
T ss_dssp EEEECCS
T ss_pred EEEEcCC
Confidence 8875443
No 77
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.32 E-value=0.2 Score=29.18 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=48.4
Q ss_pred ceEEEEEecHHhHhhcCCCceEEE-eCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLE-VSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~ve-v~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
.|+|.|+... |+.-..++ ++...|+.+|.+.+..... +. ....++..+|+.... ++-+.+|+.|.
T Consensus 2 ~m~i~Vk~~~------g~~~~~l~~v~~~~tv~~lK~~i~~~~g-ip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~ 72 (78)
T 2faz_A 2 SMWIQVRTMD------GRQTHTVDSLSRLTKVEELRRKIQELFH-VE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQ 72 (78)
T ss_dssp CEEEEEEETT------SSCEEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEE
T ss_pred cEEEEEEECC------CCEEEEEeccCCCCCHHHHHHHHHHHHC-cC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEE
Confidence 4888888753 43223788 8888999999999988652 11 123456678988754 45677999998
Q ss_pred EEcC
Q 034057 98 IIPP 101 (105)
Q Consensus 98 iiPP 101 (105)
++..
T Consensus 73 l~~r 76 (78)
T 2faz_A 73 LLVR 76 (78)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8754
No 78
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=95.22 E-value=0.015 Score=41.36 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=42.4
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
...+++.++|+.|+...+... +. ...+...|||+.++.+++|.+|++|.|+..
T Consensus 10 ~~~~~~~g~T~~dia~~i~~~---l~--~~~vaakvNg~l~dL~~~l~~~~~ve~it~ 62 (224)
T 1tke_A 10 SQRHYDHAVSPMDVALDIGPG---LA--KACIAGRVNGELVDACDLIENDAQLSIITA 62 (224)
T ss_dssp CEEECSSCBCHHHHHHHHCHH---HH--HHCCEEEETTEEEETTCCBCSCEEEEEECT
T ss_pred CEEEecCCCCHHHHHHHHhhh---cc--cceEEEEECCEEeccceEcCCCCeEEEEec
Confidence 357889999999998877432 22 235678899999999999999999998753
No 79
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.11 E-value=0.13 Score=32.74 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=54.4
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
..|.|+|+- ..| ....+.+...+++..|++..+++.. +. ...+++.-+|+.+.. +.-+.+||.|.
T Consensus 23 ~~I~IkVk~------~~g-~~i~~kVk~~t~l~kL~~~y~ek~g-i~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Id 92 (104)
T 1wz0_A 23 DHINLKVAG------QDG-SVVQFKIKRHTPLSKLMKAYCERQG-LS--MRQIRFRFDGQPINETDTPAQLEMEDEDTID 92 (104)
T ss_dssp CCEEEEEEC------SSS-CEEEEEECTTSCHHHHHHHHHHHHT-CC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEE
T ss_pred CeEEEEEEC------CCC-CEEEEEEcCCChHHHHHHHHHHHhC-CC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 457777763 234 4678999888999999999988752 11 235677889988853 46799999999
Q ss_pred EEcCCCCC
Q 034057 98 IIPPISGG 105 (105)
Q Consensus 98 iiPPvsGG 105 (105)
++.--.||
T Consensus 93 v~~~q~GG 100 (104)
T 1wz0_A 93 VFQQQTSG 100 (104)
T ss_dssp ECCCCCCC
T ss_pred EEEeccCC
Confidence 99877776
No 80
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.02 E-value=0.23 Score=32.67 Aligned_cols=77 Identities=6% Similarity=0.065 Sum_probs=55.4
Q ss_pred CCCccccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----
Q 034057 13 SDSALVDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS----- 87 (105)
Q Consensus 13 ~~~~~~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d----- 87 (105)
++|-...-.++.+.|+|+.... ....+++++...|+++|.+.|...+.-- .+..++.-+|+.+..+
T Consensus 4 ~~~~~~~~~~~~itvkv~l~~~------~~k~tv~v~~d~TV~dLKe~ls~~~~iP---~e~qrLIy~GKiLKD~eTL~~ 74 (118)
T 2daf_A 4 GSSGQESVEDSLATVKVVLIPV------GQEIVIPFKVDTILKYLKDHFSHLLGIP---HSVLQIRYSGKILKNNETLVQ 74 (118)
T ss_dssp CCCCCCCCCSSCEEEEEEETTT------CCEEEEEECSSSCSHHHHHHHHHHHTCC---TTTEEEEETTEEECSSCCHHH
T ss_pred chhhhhcccCccEEEEEEEcCC------CcEEEEEeCCCCcHHHHHHHHHhhhCCC---hHHEEEEECCeEcCCcchHHH
Confidence 3455555666778888886653 3568899998999999999999876211 2345677899998653
Q ss_pred CccCCCCEEEE
Q 034057 88 VIVNEKDELAI 98 (105)
Q Consensus 88 ~~L~dGDeVai 98 (105)
+-+++|..|-+
T Consensus 75 ~gIk~g~TIhL 85 (118)
T 2daf_A 75 HGVKPQEIVQV 85 (118)
T ss_dssp HSCCSSCEEEE
T ss_pred cCCCCCCEEEE
Confidence 46788888765
No 81
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=94.95 E-value=0.19 Score=30.06 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=46.9
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCC
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKD 94 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGD 94 (105)
..+..|+|+|+... | ....++++...|+.+|.+.+..... +. ....++..+|+....+ +-+ +|+
T Consensus 13 ~~~~~m~i~Vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~~~i-~g~ 81 (88)
T 4eew_A 13 EEPDSLEVLVKTLD------S-QTRTFIVGAQMNVKEFKEHIAASVS-IP--SEKQRLIYQGRVLQDDKKLQEYNV-GGK 81 (88)
T ss_dssp --CCEEEEEEEETT------S-CEEEEEEETTCBHHHHHHHHHHHHT-CC--GGGEEEEETTEECCTTSBGGGGTC-TTE
T ss_pred cCCCeEEEEEEcCC------C-CEEEEEECCCCCHHHHHHHHHHHhC-CC--HHHEEEEECCEECCCCCcHHHcCC-CCc
Confidence 34566999998753 3 4577888888999999999987752 11 1223566689887654 445 688
Q ss_pred EEEEE
Q 034057 95 ELAII 99 (105)
Q Consensus 95 eVaii 99 (105)
.|.++
T Consensus 82 ~i~lv 86 (88)
T 4eew_A 82 VIHLV 86 (88)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87765
No 82
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=94.83 E-value=0.14 Score=32.67 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=56.1
Q ss_pred CceEEEEEecHHhH----hhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCC
Q 034057 23 SSIQIKVLFFARAR----DLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEK 93 (105)
Q Consensus 23 ~~m~V~V~~fg~lr----e~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dG 93 (105)
..++|+|+....-. .+.| ....++++...||.+|...|..... +. .....+..+|+....+ +-+.+|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g 99 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKIHEATG-MP--AGKQKLQYEGIFIKDSNSLAYYNMASG 99 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHHHHHSS-CC--TTTEEEEETTEEECTTSBHHHHTCCSS
T ss_pred CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHHHHHHC-CC--hHHEEEEECCEECCCCCCHHHCCCCCC
Confidence 46888888765310 1234 4678899888999999999998762 21 1234566688887543 467899
Q ss_pred CEEEEEcCCCCC
Q 034057 94 DELAIIPPISGG 105 (105)
Q Consensus 94 DeVaiiPPvsGG 105 (105)
+.|.++...-||
T Consensus 100 ~~i~lv~rl~GG 111 (115)
T 1we7_A 100 AVIHLALKERSG 111 (115)
T ss_dssp CEEEEEECCCSC
T ss_pred CEEEEEEEcCCC
Confidence 999999888887
No 83
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.75 E-value=0.3 Score=30.78 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=48.5
Q ss_pred CccccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCc
Q 034057 15 SALVDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVI 89 (105)
Q Consensus 15 ~~~~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~ 89 (105)
|-.+...++.|+|.|+.. +| +...+++....||.+|.+.+.++.. +.. +..++.-.|+.... |+.
T Consensus 12 ~~~~~~~~~mIqI~Vk~~------~G-kk~~v~v~p~DTI~~LK~~I~~k~G-ip~--~qQrLif~Gk~LkD~~TL~dY~ 81 (93)
T 3plu_A 12 SGLVPRGSHMIEVVVNDR------LG-KKVRVKCLGEDSVGDFKKVLSLQIG-TQP--NKIVLQKGGSVLKDHISLEDYE 81 (93)
T ss_dssp --------CEEEEEEECT------TS-CEEEEEEETTSBHHHHHHHHHHHHT-CCG--GGEEEEETTEECCTTSBTGGGT
T ss_pred ccccCCCCceEEEEEECC------CC-CEEEEEECCcCHHHHHHHHHHHHhC-CCH--HHEEEEeCCEEccCcCCHHHcC
Confidence 345566777799998874 56 4788999888999999999987752 111 12233347877653 678
Q ss_pred cCCCCEEEEE
Q 034057 90 VNEKDELAII 99 (105)
Q Consensus 90 L~dGDeVaii 99 (105)
|++|+.|.++
T Consensus 82 I~dgstLhL~ 91 (93)
T 3plu_A 82 VHDQTNLELY 91 (93)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998875
No 84
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=94.61 E-value=0.26 Score=29.56 Aligned_cols=68 Identities=7% Similarity=0.056 Sum_probs=49.2
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDeVa 97 (105)
..|.|+|+- ..|.....+.+...+++..|.+..+++.. +. ...+++.-+|+.+..+ .-+.+||.|.
T Consensus 6 ~~i~ikV~~------~~g~~~i~~~i~~~t~l~kl~~~y~~~~g-i~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Id 76 (79)
T 3a4r_A 6 QELRLRVQG------KEKHQMLEISLSPDSPLKVLMSHYEEAMG-LS--GHKLSFFFDGTKLSGKELPADLGLESGDLIE 76 (79)
T ss_dssp CCEEEEEEC------SSTTCEEEEEECTTSCHHHHHHHHHHHHT-CT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEE
T ss_pred CEEEEEEEe------CCCCEEEEEEECCCChHHHHHHHHHHHhC-CC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 346676653 23433678899888999999999988742 22 2457888899998753 4689999998
Q ss_pred EE
Q 034057 98 II 99 (105)
Q Consensus 98 ii 99 (105)
++
T Consensus 77 v~ 78 (79)
T 3a4r_A 77 VW 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 85
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=94.52 E-value=0.23 Score=32.66 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCc-h-hh---cceeEEEECCeecCCC-----CccC
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNL-E-EI---RGCMVLALNEEYTNAS-----VIVN 91 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l-~-~~---~~~~~vaVNg~~v~~d-----~~L~ 91 (105)
.+.|.|+|+.+. | ....++++...||.+|.+.+...+|.- . .+ .+..++.-+|+...++ +.+.
T Consensus 15 ~~~m~I~vktl~------G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~ 87 (125)
T 2gow_A 15 ADMINLRLILVS------G-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP 87 (125)
T ss_dssp TTCEEEEEECTT------S-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCC
T ss_pred CCeEEEEEEeCC------C-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCC
Confidence 344888887663 5 578999998899999999999876531 1 11 2455677788887653 4566
Q ss_pred CCCEE
Q 034057 92 EKDEL 96 (105)
Q Consensus 92 dGDeV 96 (105)
+|+.+
T Consensus 88 ~~~~~ 92 (125)
T 2gow_A 88 FGKTT 92 (125)
T ss_dssp TTSEE
T ss_pred CCCce
Confidence 78854
No 86
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.47 E-value=0.47 Score=29.76 Aligned_cols=72 Identities=7% Similarity=0.038 Sum_probs=48.9
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCC---------CCCHHHHHHHHHHhCC-Cchhhcce-eEEEECCeecCCC---
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSC---------GSTTQDCLNKLIARFP-NLEEIRGC-MVLALNEEYTNAS--- 87 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~---------~~tv~dLl~~L~~~~p-~l~~~~~~-~~vaVNg~~v~~d--- 87 (105)
.+.|+|+|+..+.- .. ....++++. ..||.+|.+.|....| ++. ... .++..+|+....+
T Consensus 10 ~~~~~i~Vk~~~~~---~~-~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL 83 (107)
T 1x1m_A 10 LSDWHLAVKLADQP---LA-PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTL 83 (107)
T ss_dssp CCSCCEEEEETTCT---TS-CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBH
T ss_pred CCceEEEEEeCCCC---Cc-cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcH
Confidence 44588999976420 00 345677554 4899999999999875 333 133 4667889888654
Q ss_pred --CccCCCCEEEEE
Q 034057 88 --VIVNEKDELAII 99 (105)
Q Consensus 88 --~~L~dGDeVaii 99 (105)
+-+++|+.|.++
T Consensus 84 ~~y~i~~g~~i~lv 97 (107)
T 1x1m_A 84 DFYGIQPGSTVHVL 97 (107)
T ss_dssp HHHTCCTTCEEEEE
T ss_pred HHcCCCCCCEEEEE
Confidence 456799999876
No 87
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.36 Score=30.83 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=50.9
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
.+|.|+.+. | ....++++...||.+|...|..... +. .+..++..+|+.... +.-+.+|+.|.++
T Consensus 10 ~~i~vk~l~------G-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 10 FQIFAKTLT------G-KTITLEVESSDTIDNVKSKIQDKEG-IP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CEEEEEETT------C-CEEEEECCTTCBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEE
T ss_pred EEEEEEeCC------C-cEEEEEECCCCcHHHHHHHHHHHHC-cC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 456665543 4 4678899888999999999988652 11 123456678888754 4567799999998
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
-...||
T Consensus 80 ~~~~GG 85 (114)
T 2kdi_A 80 LRLRGG 85 (114)
T ss_dssp ECCCSS
T ss_pred EEcCCC
Confidence 877776
No 88
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.27 E-value=0.17 Score=30.89 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=46.7
Q ss_pred CceEEEEEecHHhHhhcCCCceEE-EeCCCCCHHHHHHHHHHhCCCchhhcceeEEE---ECCeecCCC-----CccCCC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPL-EVSCGSTTQDCLNKLIARFPNLEEIRGCMVLA---LNEEYTNAS-----VIVNEK 93 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~v-ev~~~~tv~dLl~~L~~~~p~l~~~~~~~~va---VNg~~v~~d-----~~L~dG 93 (105)
..|+|+|++- | ....+ +++...|+.+|.+.|.+... +.. +.-.+. .+|.....+ +-|++|
T Consensus 6 ~~m~i~Vk~~-------g-~~~~i~~v~~~~TV~~lK~~I~~~~g-ip~--~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 6 SGLPIIVKWG-------G-QEYSVTTLSEDDTVLDLKQFLKTLTG-VLP--ERQKLLGLKVKGKPAENDVKLGALKLKPN 74 (90)
T ss_dssp CSCCEEEEET-------T-EEEEECSCCSSSBHHHHHHHHHHHTC-CCT--TTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred ceEEEEEEEC-------C-EEEEEEEeCCCCCHHHHHHHHHHHHC-cCH--HHeEEEeeccCCcCcCCCCCHHHcCCCCC
Confidence 4588999862 2 35678 88888999999999998752 211 223445 688887654 356799
Q ss_pred CEEEEEc
Q 034057 94 DELAIIP 100 (105)
Q Consensus 94 DeVaiiP 100 (105)
+.|.++-
T Consensus 75 ~~l~l~~ 81 (90)
T 1v5t_A 75 TKIMMMG 81 (90)
T ss_dssp EEEEEEC
T ss_pred CEEEEEe
Confidence 9998873
No 89
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.20 E-value=0.58 Score=30.37 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=48.4
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCc-h-hh---cceeEEEECCeecCCCC-----ccCC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNL-E-EI---RGCMVLALNEEYTNASV-----IVNE 92 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l-~-~~---~~~~~vaVNg~~v~~d~-----~L~d 92 (105)
..|.|+|+... | ....++++...||.+|.+.+...+|.- . .+ .+..++.-.|+....+. .|..
T Consensus 15 ~~m~I~vKtl~------G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~ 87 (116)
T 1wgh_A 15 DMINLRLILVS------G-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPF 87 (116)
T ss_dssp SSEEEEEECSS------S-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCS
T ss_pred CeEEEEEEeCC------C-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCC
Confidence 44889888754 5 578999998899999999999976531 1 10 24567778899887654 4446
Q ss_pred CCEEEE
Q 034057 93 KDELAI 98 (105)
Q Consensus 93 GDeVai 98 (105)
|+.+.+
T Consensus 88 ~~~~tl 93 (116)
T 1wgh_A 88 GKTTVM 93 (116)
T ss_dssp SCEEEE
T ss_pred CCceEE
Confidence 776433
No 90
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=94.17 E-value=0.22 Score=30.78 Aligned_cols=56 Identities=14% Similarity=0.377 Sum_probs=44.1
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
....+.++.++++.+|+...+.+.. +. +...+++..+|..+++ |..+.|||.|.++
T Consensus 20 ~dl~f~I~~~t~v~kLi~ayc~~~~-I~-~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 20 EDLRLSIPVDFTVKDLIKRYCTEVK-IS-FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHT-CC-CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHHHcC-CC-cCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 4578889999999999999887642 11 1236899999999874 6789999999876
No 91
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.95 E-value=0.27 Score=30.50 Aligned_cols=66 Identities=8% Similarity=0.065 Sum_probs=44.2
Q ss_pred CceEEEEEecHHhHhhcCCCce-EEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC----CccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDM-PLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS----VIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~-~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d----~~L~dGDeVa 97 (105)
.+|+|+|++- | ... .++++...|+.+|.+.|.+... +.. +.-.+..+|+....+ +-|++|+.|.
T Consensus 6 ~~m~i~Vk~~-------g-~~~~~l~v~~~~TV~~lK~~I~~~tg-ip~--~~QkLi~~Gk~L~D~tL~~~~I~~g~~i~ 74 (96)
T 1wgg_A 6 SGYSVTVKWG-------K-EKFEGVELNTDEPPMVFKAQLFALTG-VQP--ARQKVMVKGGTLKDDDWGNIKMKNGMTVL 74 (96)
T ss_dssp CEEEEEEEET-------T-EEEEEEEEESSSCHHHHHHHHHHHTC-CCT--TTSCCEETTEECCSSCCCSCCCCSSCEEE
T ss_pred cEEEEEEEEC-------C-EEEEEEEECCCCcHHHHHHHHHHHHC-cCH--HHeEEEECCcCCCCCCHHHCCCCCCCEEE
Confidence 4588999852 2 355 5888888999999999998752 211 112233578776543 4567899887
Q ss_pred EE
Q 034057 98 II 99 (105)
Q Consensus 98 ii 99 (105)
++
T Consensus 75 l~ 76 (96)
T 1wgg_A 75 MM 76 (96)
T ss_dssp CC
T ss_pred EE
Confidence 75
No 92
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.81 E-value=0.46 Score=30.17 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=51.3
Q ss_pred CCCccccCCCCc-eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC----
Q 034057 13 SDSALVDNKESS-IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS---- 87 (105)
Q Consensus 13 ~~~~~~~~~~~~-m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d---- 87 (105)
+--.|.+-.++. |+|.|+-.. | +...++++...||.+|.+.+.++.. +. .+..++...|+...++
T Consensus 16 ~~~~~~~~~~~~mm~I~VKtl~------G-k~i~lev~p~dTV~~lK~~Ia~k~G-ip--~~qQrLi~~Gk~L~D~~TL~ 85 (100)
T 1uh6_A 16 SLVPRGSEGAATMIEVVCNDRL------G-KKVRVKCNTDDTIGDLKKLIAAQTG-TR--WNKIVLKKWYTIFKDHVSLG 85 (100)
T ss_dssp SSCCCCCSSCCCEEEEEEECSS------S-SCEEEEEETTSBHHHHHHHHHHHHC-CC--GGGCEEEETTEECCSSCBHH
T ss_pred ccccccCCCCCCeEEEEEECCC------C-CEEEEEeCCCCcHHHHHHHHHHHhC-CC--HHHEEEEECCEECCCCCCHH
Confidence 334455544444 778777543 4 4678999888999999999998742 22 1234566778888654
Q ss_pred -CccCCCCEEEEE
Q 034057 88 -VIVNEKDELAII 99 (105)
Q Consensus 88 -~~L~dGDeVaii 99 (105)
+-|.+|+.|.+.
T Consensus 86 dygI~~gstlhL~ 98 (100)
T 1uh6_A 86 DYEIHDGMNLELY 98 (100)
T ss_dssp HHTCCTTEEEEEE
T ss_pred HcCCCCCCEEEEE
Confidence 456689887764
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=93.72 E-value=0.5 Score=27.60 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=47.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|.|+|+- ..| +...+.+....++..|.+..+++.. +. ...+++.-+|+.+.. +.-+.+||.|.++
T Consensus 2 i~lkV~~------~~g-~~v~~~v~~~t~l~kl~~~y~~~~g-i~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAG------QDG-SVVQFKIKRHTPLSKLMKAYCERQG-LS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEEC------TTS-CEEEEEECTTSCTHHHHHHHHHHHT-CC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEEC------CCC-CEEEEEECCCChHHHHHHHHHHHhC-CC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5566552 334 4788899888999999999987642 21 245788889999864 4568999999886
No 94
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=92.77 E-value=0.012 Score=34.49 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=45.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.. .| ....++++...|+.+|.+.+..... +. .....+..+|+.... ++-+.+|+.|.++
T Consensus 1 M~i~Vk~~------~g-~~~~~~v~~~~tV~~lK~~i~~~~g-i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFN------SS-YGFPVEVDSDTSILQLKEVVAKQQG-VP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 56666643 23 3456788778899999999987652 11 123345567776643 4567789999888
Q ss_pred cCCCC
Q 034057 100 PPISG 104 (105)
Q Consensus 100 PPvsG 104 (105)
.+.-|
T Consensus 71 ~rlrg 75 (76)
T 3b1l_X 71 QRPRR 75 (76)
Confidence 76654
No 95
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=93.64 E-value=0.11 Score=32.05 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=45.5
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC-CchhhcceeEEEE-CCeec--C----CCCccCCCC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP-NLEEIRGCMVLAL-NEEYT--N----ASVIVNEKD 94 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p-~l~~~~~~~~vaV-Ng~~v--~----~d~~L~dGD 94 (105)
+.+.|++.| +.+.+ +...+.+|...|++.|++.+.+.|. .... .+.+.+.| |...+ + .|.++.+||
T Consensus 3 ~yI~ITidl----~~y~~-~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~-~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 3 SYIDITIDL----KHYNG-SVFDLRLSDYHPVKKVIDIAWQAQSVSMPP-REGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp CEEEEEEEC----TTTTC-CEEEEEEETTSBTTHHHHHHHHHSCCCSCC-CTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred cEEEEEEEe----eccCC-ceEEEECCCchhHHHHHHHHHHHhCCCcCC-CCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 345566654 33445 4789999999999999999999884 2211 12123333 32221 1 378899999
Q ss_pred EEEEE
Q 034057 95 ELAII 99 (105)
Q Consensus 95 eVaii 99 (105)
.+.|+
T Consensus 77 ~Leil 81 (81)
T 2bps_A 77 RLEIL 81 (81)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99874
No 96
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=93.50 E-value=0.013 Score=38.35 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.. .| ....++++...||.+|...+.+... +. .+...+..+|+...+ +.-|.+|+.|.++
T Consensus 1 M~I~Vk~~------~G-~~~~l~v~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 1 MQIFVKTL------TG-KTITLEVESSDTIDNVKSKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeC------CC-CEEEEEeCCCCCHHHHHHHHHHHhC-cC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEE
Confidence 55666543 23 3567888888899999999987642 11 122345567777653 4567889999998
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 71 ~rl~GG 76 (128)
T 3u5e_m 71 LRLRGG 76 (128)
T ss_dssp ------
T ss_pred EEcCCC
Confidence 877776
No 97
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=92.86 E-value=0.23 Score=31.24 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=44.1
Q ss_pred CCCceEEEEEecHHhHhhcCC-CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----C--ccCC
Q 034057 21 KESSIQIKVLFFARARDLTGL-TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----V--IVNE 92 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~-~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~--~L~d 92 (105)
++..|+|+|+... |. ....++++...||.+|.+.|.++.|+.-.. +.-++..+|+....+ + .+.+
T Consensus 20 ~~~~m~I~VK~~~------g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~-~~QrLIy~Gk~L~D~~tL~~y~~~I~~ 92 (99)
T 2kdb_A 20 QGHPVTLIIKAPN------QKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLT-KDQRLVYSGRLLPDHLQLKDILRKQDE 92 (99)
T ss_dssp ---CEEEEEECTT------SSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCT-TTCCEEETTEEECTTSBTHHHHTTTCS
T ss_pred CCCeEEEEEEcCC------CCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCCh-hhEEEEECCEECCCCCCHHHHhcCCCC
Confidence 3455899998643 22 246888888899999999999876432111 123455688887654 3 4556
Q ss_pred CCEEEE
Q 034057 93 KDELAI 98 (105)
Q Consensus 93 GDeVai 98 (105)
|+.|-+
T Consensus 93 ~~tihL 98 (99)
T 2kdb_A 93 YHMVHL 98 (99)
T ss_dssp EEEEEE
T ss_pred CCEEEe
Confidence 666543
No 98
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=92.85 E-value=0.019 Score=39.13 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
|+|.|+.. .| ....++++...||.+|.+.|.+... +. .+...+..+|+.... +.-|.+|+.|.++
T Consensus 1 MqI~VK~l------~G-~~~~l~V~~~~TV~~LK~~I~~~~g-ip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTL------TG-KTITLEVESSDTIDNVKSKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeC------CC-CEEEEEECCCCCHHHHHHHHHHHhC-CC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEE
Confidence 55665543 24 3567888888899999999987652 11 122345567777653 4567889999998
Q ss_pred cCCCCC
Q 034057 100 PPISGG 105 (105)
Q Consensus 100 PPvsGG 105 (105)
...-||
T Consensus 71 lrl~GG 76 (152)
T 3u5c_f 71 LRLRGG 76 (152)
T ss_dssp ------
T ss_pred eeccCC
Confidence 888776
No 99
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.83 E-value=0.24 Score=30.60 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=44.9
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC----CCccCCCCE
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA----SVIVNEKDE 95 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~----d~~L~dGDe 95 (105)
..++.|+|+|++- | ....++++...||.+|.+.|..... +.. +.-.+..+|+..+. ++-|++|+.
T Consensus 13 ~~~~~~~i~Vk~~-------g-~~~~i~v~~~~TV~~LK~~I~~~tg-ip~--~~QrL~~~Gk~Ldd~tL~~~~i~~g~~ 81 (95)
T 1v86_A 13 VGKELVDLKIIWN-------K-TKHDVKVPLDSTGSELKQKIHSITG-LPP--AMQKVMYKGLVPEDKTLREIKVTSGAK 81 (95)
T ss_dssp CCCCCEEEEEEET-------T-EEEEEEECTTSBHHHHHHHHHHHHC-SCS--TTCCCBSSSBCCSSSBHHHHCCCTTEE
T ss_pred CCCceEEEEEEEC-------C-EEEEEEECCCCcHHHHHHHHHHHHC-cCH--HHeEEEECCeeCCcCcHHHCCCCCCCE
Confidence 3445688888843 2 3567899988999999999987642 111 11223356666632 245779999
Q ss_pred EEEE
Q 034057 96 LAII 99 (105)
Q Consensus 96 Vaii 99 (105)
|.++
T Consensus 82 i~lv 85 (95)
T 1v86_A 82 IMVV 85 (95)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8876
No 100
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.65 E-value=0.98 Score=27.18 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=46.4
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCC-----CCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-C-----Ccc
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCG-----STTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-S-----VIV 90 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~-----~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-d-----~~L 90 (105)
+.+|+|+|+.- | ....++++.. .||.+|.+.|..... +.. ...++..+|+.... + +-+
T Consensus 5 ~~~~~v~Vk~~-------~-~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g-ip~--~~qrL~~~Gk~L~D~~~~L~~~~i 73 (92)
T 1wxv_A 5 SSGLTVTVTHS-------N-EKHDLHVTSQQGSSEPVVQDLAQVVEEVIG-VPQ--SFQKLIFKGKSLKEMETPLSALGI 73 (92)
T ss_dssp CSSEEEEEECS-------S-SEEEEEECCCSSSSSCBHHHHHHHHHHHTC-CCT--TTCEEEETTEEECCSSSBHHHHTC
T ss_pred CCeEEEEEEEC-------C-EEEEEEECCCcCcccCcHHHHHHHHHHHHC-cCH--HHEEEEECCeecCCCcccHHHCCC
Confidence 34688999873 2 2457888774 899999999988752 211 22355678887764 3 346
Q ss_pred CCCCEEEEEc
Q 034057 91 NEKDELAIIP 100 (105)
Q Consensus 91 ~dGDeVaiiP 100 (105)
++|+.|.++-
T Consensus 74 ~~g~~i~l~~ 83 (92)
T 1wxv_A 74 QDGCRVMLIG 83 (92)
T ss_dssp CSSEEEEEES
T ss_pred CCCCEEEEEe
Confidence 7899988764
No 101
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.18 Score=31.53 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=43.9
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEE
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELA 97 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVa 97 (105)
++|+|+|+. .| ....++++...||.+|.+.|..... +.. +..++..+|+.... +.-+++|+.|.
T Consensus 27 m~i~I~Vk~-------~g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip~--~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~ 95 (101)
T 3m63_B 27 MSLNIHIKS-------GQ-DKWEVNVAPESTVLQFKEAINKANG-IPV--ANQRLIYSGKILKDDQTVESYHIQDGHSVH 95 (101)
T ss_dssp --CCEEEEC-------SS-CCCCBCCCTTSBHHHHHHHHHHHHS-CCS--TTCCEEETTEECCTTSBTTTTTCCTTEEEE
T ss_pred cEEEEEEEE-------CC-EEEEEEeCCCCCHHHHHHHHHHHHC-cCh--HHEEEEECCEECCCcCcHHHCCCCCCCEEE
Confidence 446666663 23 4567888888999999999988752 111 12345568888754 46688899988
Q ss_pred EE
Q 034057 98 II 99 (105)
Q Consensus 98 ii 99 (105)
++
T Consensus 96 lv 97 (101)
T 3m63_B 96 LV 97 (101)
T ss_dssp EC
T ss_pred EE
Confidence 76
No 102
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=92.38 E-value=1.2 Score=29.27 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=47.1
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEE-E-CCeecCC-----CCccCCCCEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLA-L-NEEYTNA-----SVIVNEKDEL 96 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~va-V-Ng~~v~~-----d~~L~dGDeV 96 (105)
+|+|+|+.+. | ....++++...|+.+|.+.+..... +.. ..-++. . +|+.... ++-+.+|+.|
T Consensus 2 ~m~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~I~~~~g-ip~--~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 2 GWDLTVKMLA------G-NEFQVSLSSSMSVSELKAQITQKIG-VHA--FQQRLAVHPSGVALQDRVPLASQGLGPGSTV 71 (159)
T ss_dssp -CEEEEEETT------S-CEEEEECCTTCCHHHHHHHHHHHHC-CCG--GGEEEEEETTCCBCCTTSCGGGGTCCTTCEE
T ss_pred ceEEEEEECC------C-CEEEEEeCCCCcHHHHHHHHHHHhC-CCH--HHEEEEEcCCCCCCCCCCCHHHcCCCCCCEE
Confidence 4888888653 4 4678999988999999999988652 111 112333 5 7877654 4678899999
Q ss_pred EEEcC
Q 034057 97 AIIPP 101 (105)
Q Consensus 97 aiiPP 101 (105)
.++-.
T Consensus 72 ~l~~~ 76 (159)
T 3rt3_B 72 LLVVD 76 (159)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 88754
No 103
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=92.31 E-value=0.73 Score=30.96 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=41.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcCCCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPPvsGG 105 (105)
....++++...|+.+|...+..+.. +.. +..++..+|+.... ++-+++|+.|.++-..-||
T Consensus 107 ~~~~l~v~~~~tV~~lK~~I~~~~g-ip~--~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 107 KTITLEVEPSDTIENVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHC-CCG--GGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeEEecCCCCHHHHHHHHHHHhC-CCc--eeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 4678899888999999999988752 111 22345568887753 5679999999999988887
No 104
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.29 E-value=0.46 Score=29.04 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=41.4
Q ss_pred ceEEEEEecHHhHhhcCCCc-eEE-EeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEE
Q 034057 24 SIQIKVLFFARARDLTGLTD-MPL-EVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDEL 96 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~-~~v-ev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeV 96 (105)
.|+|+|+-. .|... ..+ +++...||.+|.+.+.+..+++..-+..+...-.|+.... ++.|.+|+.|
T Consensus 10 ~M~I~Vk~~------~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl 83 (88)
T 2dzj_A 10 HYEVEILDA------KTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATL 83 (88)
T ss_dssp CEEEEEEES------SSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEE
T ss_pred EEEEEEECC------CCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEE
Confidence 388888753 23322 357 8888899999999999865444322222222223656533 4567777776
Q ss_pred EE
Q 034057 97 AI 98 (105)
Q Consensus 97 ai 98 (105)
.|
T Consensus 84 ~~ 85 (88)
T 2dzj_A 84 YF 85 (88)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 105
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=92.23 E-value=0.026 Score=40.02 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcCCCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPPISG 104 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsG 104 (105)
|+|.|+.+. | ....++++...||.+|...|..... +. .+.-++..+|+...++..|.+++.|.++...-|
T Consensus 1 MqI~VKtL~------G-ktitLeV~~sdTV~~LK~kI~~keG-IP--~~qQRLIf~GK~LeD~~TLs~~STLhLvlRLrG 70 (189)
T 2xzm_9 1 MQVQVKTLE------G-ETKIYTLEQGTSVLDLKSQISQDMG-FE--IDMMTLVNNGFIAPNTELVTDDVTYYLSLKLLG 70 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCC------C-CEEEEEECCcChHHHHHHHHHHHhC-cC--hhHEEEEecCeECCCCCcccCCCEEEEEEecCC
Confidence 556665442 4 4677888878899999988876541 11 122345568888887778889999999888777
Q ss_pred C
Q 034057 105 G 105 (105)
Q Consensus 105 G 105 (105)
|
T Consensus 71 G 71 (189)
T 2xzm_9 71 G 71 (189)
T ss_dssp -
T ss_pred C
Confidence 6
No 106
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=92.00 E-value=1.4 Score=28.60 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=51.2
Q ss_pred cCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCC
Q 034057 19 DNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEK 93 (105)
Q Consensus 19 ~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dG 93 (105)
+.+...+.|+|+-- -| .+..+.+...+++..|++..+++.. +. ...+++.-+|+.+.. +.-+.+|
T Consensus 35 k~~~~~I~LKV~~q------dg-~ev~fkIk~tt~L~KLm~aY~er~G-l~--~~~irFlFDG~rI~~~~TP~dL~MEDg 104 (115)
T 3kyd_D 35 KKEGEYIKLKVIGQ------DS-SEIHFKVKMTTHLKKLKESYCQRQG-VP--MNSLRFLFEGQRIADNHTPKELGMEEE 104 (115)
T ss_dssp ----CEEEEEEECT------TS-CEEEEEEETTSCTHHHHHHHHHHHT-CC--TTSEEEEETTEECCTTCCTTTTTCCTT
T ss_pred CCCCCeEEEEEEcC------CC-CEEEEEEccCChHHHHHHHHHHHhC-CC--hhhEEEEECCeECCCCCCHHHcCCCCC
Confidence 33344566665422 24 4578888888999999999988753 22 356889999999863 4579999
Q ss_pred CEEEEEcCC
Q 034057 94 DELAIIPPI 102 (105)
Q Consensus 94 DeVaiiPPv 102 (105)
|.|.++.--
T Consensus 105 D~IdV~~~Q 113 (115)
T 3kyd_D 105 DVIEVYQEQ 113 (115)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeec
Confidence 999998643
No 107
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=91.38 E-value=0.88 Score=27.29 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=39.2
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEc
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIP 100 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiP 100 (105)
....++++...|+.+|.+.|..... +.. ....+..+|+.... ++.+++|+.|.++-
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~g-ip~--~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITN-VLP--RGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHC-CCT--TTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHC-cCh--HHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 3567888888999999999987642 111 23355678888754 35577899988763
No 108
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.10 E-value=0.7 Score=35.57 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=46.8
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC--CchhhcceeEEEECCeecCC-----CCccCCCC
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP--NLEEIRGCMVLALNEEYTNA-----SVIVNEKD 94 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p--~l~~~~~~~~vaVNg~~v~~-----d~~L~dGD 94 (105)
...|+|+|+... | +...++++...||.+|.+.|...++ ++. ....++..+|+.... ++-|++|+
T Consensus 5 ~~~M~I~VKtl~------G-k~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs 75 (368)
T 1oqy_A 5 SSAVTITLKTLQ------Q-QTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN 75 (368)
T ss_dssp -CCCCEEEEETT------T-EEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS
T ss_pred CceEEEEEEeCC------C-CEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC
Confidence 456899999863 3 4567888888999999999998532 121 134566678887753 46678999
Q ss_pred EEE
Q 034057 95 ELA 97 (105)
Q Consensus 95 eVa 97 (105)
.|.
T Consensus 76 tIv 78 (368)
T 1oqy_A 76 FVV 78 (368)
T ss_dssp CEE
T ss_pred EEE
Confidence 883
No 109
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.83 E-value=2 Score=27.11 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=47.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAII 99 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaii 99 (105)
..++|+.-. +.-+.....++++...|+.+|.+.+.++.. +. .+...+..+|+...+ |+-|++|..|.++
T Consensus 16 ati~V~~~~---~~~~~~~~~lev~~~~TV~~lK~kI~~k~g-ip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 16 ATIEVFLPP---RLKKDRKNLLETRLHITGRELRSKIAETFG-LQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEEEECCT---TTCCSSSEEEEEESSSBHHHHHHHHHHHTT-CC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred EEEEEEecC---CCCCCcEEEEEeCCcCHHHHHHHHHHHHHC-cC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 345555433 233346788999888999999999998863 11 123455678999865 4578899999766
No 110
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=90.73 E-value=2.4 Score=27.87 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=49.0
Q ss_pred cccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCC-chhh---cceeEEEECCeecCC-----C
Q 034057 17 LVDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPN-LEEI---RGCMVLALNEEYTNA-----S 87 (105)
Q Consensus 17 ~~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~-l~~~---~~~~~vaVNg~~v~~-----d 87 (105)
..+..+..|.|+|+... |..-..++++...||.+|.+.+...+|. .+.+ .+..++.-+|+.... |
T Consensus 9 ~~~~~~~~~~i~~kt~~------G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsd 82 (126)
T 1se9_A 9 LEAEVHNQLEIKFRLTD------GSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKD 82 (126)
T ss_dssp -CCSSCCCEEEEEEETT------SCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGG
T ss_pred hhhhhcccEEEEEEECC------CCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHH
Confidence 34445577999987754 4433368888889999999999887763 2111 134577778998865 4
Q ss_pred CccCCCC
Q 034057 88 VIVNEKD 94 (105)
Q Consensus 88 ~~L~dGD 94 (105)
+.+.+|+
T Consensus 83 y~I~~~~ 89 (126)
T 1se9_A 83 YRSPVSN 89 (126)
T ss_dssp GSCCTTS
T ss_pred cCCCcCC
Confidence 5777885
No 111
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=90.38 E-value=1.5 Score=31.44 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=50.4
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcCCCCC
Q 034057 39 TGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 39 ~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPPvsGG 105 (105)
.| .+..+.+...+++..|++..+++.. +. ...+++.-||..+.. +.-+.|||.|.++.--.||
T Consensus 65 dG-~eV~FKIKrtTpL~KLmeAYcERqG-L~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 65 GS-SEIFFKIKKTTPLRRLMEAFAKRQG-KE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp SS-CEEEEEEETTSCTHHHHHHHHHHTT-CC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CC-CEEEEEEccCChHHHHHHHHHHHhC-CC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 35 4788999888999999999998863 22 245778889999863 5679999999999888877
No 112
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=90.37 E-value=2.2 Score=26.77 Aligned_cols=54 Identities=7% Similarity=0.098 Sum_probs=42.4
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-C----CccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-S----VIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-d----~~L~dGDeVaii 99 (105)
...+.+...+++.-|+...+++.. +. ...+++..+|+.+.. + .-+.|||.|.++
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g-~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMG-LS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTT-CS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHC-CC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 467888888899999999988753 22 246889999999875 3 359999999986
No 113
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=90.24 E-value=0.25 Score=30.17 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.9
Q ss_pred EEEECCeecCCCCccCCCCEEEEEc
Q 034057 76 VLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
.|.|||+.+...+.|++||.|.|.-
T Consensus 27 ~V~VNg~~~~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 27 AVWLNGSCAKASKEVKAGDTISLHY 51 (92)
T ss_dssp CCEETTEECCTTCBCCTTCEEEECC
T ss_pred cEEECCEEcCCCCCcCCCCEEEEEe
Confidence 4889999998899999999998853
No 114
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=89.61 E-value=0.22 Score=29.72 Aligned_cols=53 Identities=4% Similarity=-0.137 Sum_probs=35.0
Q ss_pred EEeC--CCCCHHHHHHHHHHh--CCCchhhcceeEEEECCeec-CCCCccCCCCEEEE
Q 034057 46 LEVS--CGSTTQDCLNKLIAR--FPNLEEIRGCMVLALNEEYT-NASVIVNEKDELAI 98 (105)
Q Consensus 46 vev~--~~~tv~dLl~~L~~~--~p~l~~~~~~~~vaVNg~~v-~~d~~L~dGDeVai 98 (105)
+.++ ++..+..++.....- ....+.+...=.|.|||+.+ ...+.+.+||.|.+
T Consensus 13 ~~v~~~~~~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 13 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp EECCSCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEE
T ss_pred EEECCCCCchHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEE
Confidence 4454 347888888766321 12233444444678999987 57889999998876
No 115
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=89.55 E-value=0.27 Score=33.21 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=20.9
Q ss_pred eEEEECCeecCCCCccCCCCEEEE
Q 034057 75 MVLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 75 ~~vaVNg~~v~~d~~L~dGDeVai 98 (105)
-.++|||..+...+.|++||+|.|
T Consensus 110 ngt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 110 ADTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CCEEETTEECCSCEECCTTCEEEE
T ss_pred CceEECCEEcCCceECCCCCEEEE
Confidence 358899999987789999999987
No 116
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=89.20 E-value=3 Score=29.47 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=50.2
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcCCCCC
Q 034057 39 TGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 39 ~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPPvsGG 105 (105)
.| .+..+.+...+++..|+...+++.. +. ...+++.-+|+.+.. +.-+.+||.|.++.--.||
T Consensus 37 ~g-~~v~fkIk~~t~l~kL~~ay~er~G-i~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 37 GS-SEIFFKIKKTTPLRRLMEAFAKRQG-KE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp SS-CEEEEEECTTSCTHHHHHHHHHHHS-SC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CC-CEEEEEEecCCHHHHHHHHHHHHhC-CC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 35 4789999888999999999988753 22 356788999999863 5679999999999887776
No 117
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=89.02 E-value=0.3 Score=32.02 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=21.3
Q ss_pred eEEEECCeecCCCCccCCCCEEEE
Q 034057 75 MVLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 75 ~~vaVNg~~v~~d~~L~dGDeVai 98 (105)
..++|||+.+...+.|++||.|.|
T Consensus 90 ngt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 90 TRTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CCEEETTEECCSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCcEECCCCCEEEE
Confidence 468999999987889999999987
No 118
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=88.79 E-value=1.8 Score=32.55 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCCCCE
Q 034057 21 KESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNEKDE 95 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~dGDe 95 (105)
....|+|.|+... | +...++++...||.+|.+.|.+... +. .+..++..+|+....+ .-|++|+.
T Consensus 230 ~~~~MqI~VKtl~------G-k~~~leV~~s~TV~dLK~kI~~~~G-Ip--~~~QRLi~~Gk~L~D~~TLsdygI~~gst 299 (307)
T 3ai5_A 230 ITGSMQIFVKTLT------G-KTITLEVEPSDTIENVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLSDYNIQKEST 299 (307)
T ss_dssp SCCCEEEEEECTT------S-CEEEEEECTTCBHHHHHHHHHHHHC-CC--GGGCEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred CCCeEEEEEEeCC------C-CEEEEEECCCCcHHHHHHHHHHHHC-cC--hHHEEEEeCCeecCCCCCHHHcCCCCCCE
Confidence 4566888888752 3 3578889888999999999987642 11 1234566788887543 45779999
Q ss_pred EEEEcC
Q 034057 96 LAIIPP 101 (105)
Q Consensus 96 VaiiPP 101 (105)
|.++-.
T Consensus 300 L~LvlR 305 (307)
T 3ai5_A 300 LHLVLR 305 (307)
T ss_dssp EEEEC-
T ss_pred EEEEEe
Confidence 988643
No 119
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.45 E-value=2.9 Score=25.46 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=41.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE-----------CCeecCC-CCccCC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL-----------NEEYTNA-SVIVNE 92 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV-----------Ng~~v~~-d~~L~d 92 (105)
++++|.... .......+..++...||.+|...|...+. +...... +.+. +.....+ ++.+.+
T Consensus 10 v~l~I~~~~----~~~~~~~e~~l~~~~TV~~LK~~i~~~~g-ip~~~q~-L~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 10 LTLKIKCSN----QPERQILEKQLPDSMTVQKVKGLLSRLLK-VPVSELL-LSYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp EEEEEEESS----CSSSCCEEEEEETTSBHHHHHHHHHTTTT-CCTTTCE-EEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred EEEEEEecC----CCCCcEEEEECCCCCCHHHHHHHHHHHHC-CChhHeE-EEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 555555431 11334677888888999999999998773 1111111 1222 1212222 478999
Q ss_pred CCEEEEEc
Q 034057 93 KDELAIIP 100 (105)
Q Consensus 93 GDeVaiiP 100 (105)
||+|.+.-
T Consensus 84 G~~I~V~d 91 (97)
T 1wjn_A 84 GDCLLVRW 91 (97)
T ss_dssp TCEEEEEC
T ss_pred CCEEEEEe
Confidence 99998864
No 120
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=87.74 E-value=0.4 Score=33.40 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=22.1
Q ss_pred eeEEEECCeecCCCCccCCCCEEEE
Q 034057 74 CMVLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 74 ~~~vaVNg~~v~~d~~L~dGDeVai 98 (105)
...++|||..|...+.|+.||.|.|
T Consensus 139 ~a~t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 139 GADTYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp TCCEEETTEECCSCEECCTTCEEEE
T ss_pred CCeEEEcCEEccccEEcCCCCEEEE
Confidence 3468999999998899999999976
No 121
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=87.22 E-value=2.9 Score=27.19 Aligned_cols=62 Identities=6% Similarity=-0.052 Sum_probs=40.7
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCc-----cC-------CCCEEEEEcCCCCC
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVI-----VN-------EKDELAIIPPISGG 105 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~-----L~-------dGDeVaiiPPvsGG 105 (105)
++....+++....||.+|.+.+..... +. .+.-++..+|+....+.. |. .+..|.+.-. .||
T Consensus 10 ~ktti~lev~~sdTV~~lK~kI~~~eg-IP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~~g 83 (118)
T 2fnj_B 10 HKTTIFTDAKESSTVFELKRIVEGILK-RP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADD 83 (118)
T ss_dssp BTEEEEEEEETTSBHHHHHHHHHHHHC-CC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-SSS
T ss_pred CCEEEEEEeCCcChHHHHHHHHHHHhC-CC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-CCC
Confidence 334577888888999999999987642 11 122345579998876543 44 6788877655 444
No 122
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=87.19 E-value=0.68 Score=30.53 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.5
Q ss_pred eEEEECCeecCCCCccCCCCEEEEEc
Q 034057 75 MVLALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 75 ~~vaVNg~~v~~d~~L~dGDeVaiiP 100 (105)
=.|.|||..+...+.|+.||+|.|.-
T Consensus 34 G~V~VNG~~vk~s~~V~~GD~I~I~~ 59 (133)
T 1dm9_A 34 GKVHYNGQRSKPSKIVELNATLTLRQ 59 (133)
T ss_dssp TCEEETTEECCTTCBCCTTCEEEEEE
T ss_pred CcEEECCEEcCCCCEeCCCCEEEEEe
Confidence 35889999998899999999998853
No 123
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=86.29 E-value=1.1 Score=27.33 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=41.0
Q ss_pred eEEEEEecHHhHhhcCCCceEEE--eCCCCCHHHHHHHH-HHhCCCchhhcceeEEEECCeecCCC-----Ccc-CCCCE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLE--VSCGSTTQDCLNKL-IARFPNLEEIRGCMVLALNEEYTNAS-----VIV-NEKDE 95 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~ve--v~~~~tv~dLl~~L-~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L-~dGDe 95 (105)
|+|.|+-.. | ....++ ++...|+.+|.+.+ ... .++. .+..++..+|+...++ +.+ .+|..
T Consensus 2 mqI~VKtl~------g-~~~~i~v~v~~~~TV~~lK~~I~~~~-~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~st 71 (87)
T 2lxa_A 2 VHLTLKKIQ------A-PKFSIEHDFSPSDTILQIKQHLISEE-KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANST 71 (87)
T ss_dssp CEEEEEECS------S-SCEECCEECCTTCBHHHHHHHHHHTT-SCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCE
T ss_pred EEEEEEcCC------C-CEEEEEEcCCCCCcHHHHHHHHHHHh-cCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCE
Confidence 778777543 3 345555 44788999999999 544 3322 1234566799988654 445 46666
Q ss_pred EEEE
Q 034057 96 LAII 99 (105)
Q Consensus 96 Vaii 99 (105)
|.++
T Consensus 72 l~v~ 75 (87)
T 2lxa_A 72 ITVM 75 (87)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 124
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.23 E-value=2.8 Score=25.76 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
+..|+|||.|- ....+.+|.++++.+|.+.|.++.+
T Consensus 3 ~~~~~VKV~~~---------~tvairvp~~~~y~~L~~~l~~kL~ 38 (83)
T 1oey_A 3 HMAYTLKVHYK---------YTVVMKTQPGLPYSQVRDMVSKKLE 38 (83)
T ss_dssp SSCEEEEEESS---------SEEEEEECTTCCHHHHHHHHHHHTT
T ss_pred CCcEEEEEEEE---------EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44577887763 3688999999999999999999875
No 125
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=84.36 E-value=0.58 Score=35.90 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=38.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEE---EECCeecCCCCccCCCCEEEEEc
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVL---ALNEEYTNASVIVNEKDELAIIP 100 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~v---aVNg~~v~~d~~L~dGDeVaiiP 100 (105)
..+.++.|+|+.|+-..+... +. ..+.- ..|+..++.++.|++||.|.|+.
T Consensus 341 ~~~~l~~G~t~~d~a~~iH~d---~~---~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 341 HVFLMKKGSTPRDLAFKVHTD---LG---KGFLYAINARTKRRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp CCEEEETTCCHHHHHHHHCHH---HH---HTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred eeEEeCCCCCHHHHHHHHhHH---HH---hhhhhhHHhcCCEEcCCCccccCCCEEEEEe
Confidence 567789999999998776432 22 12222 46888899999999999999974
No 126
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=83.84 E-value=3 Score=24.82 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=38.2
Q ss_pred eEEEEEecHHhHhhcCCCceEEE-eCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC--------CCCccCCCCE
Q 034057 25 IQIKVLFFARARDLTGLTDMPLE-VSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN--------ASVIVNEKDE 95 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~ve-v~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~--------~d~~L~dGDe 95 (105)
|+|+|+.-+ | ...++ ++...||.+|.+.+.+..+ +..-...+...-.++.+. .+.-|.+|+.
T Consensus 1 m~i~vr~~~------G--~~~v~~l~~~~Tv~~Lk~~I~~~~g-i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~ 71 (86)
T 2kzr_A 1 WRVRCKAKG------G--THLLQGLSSRTRLRELQGQIAAITG-IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDM 71 (86)
T ss_dssp CCEEEEETT------E--EEEECSCCTTCBHHHHHHHHHHHTC-CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCE
T ss_pred CEEEEEcCC------C--CEEeeecCCCCCHHHHHHHHHHHhC-CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCE
Confidence 566776654 3 23466 8888999999999998753 211111222111123321 2466888998
Q ss_pred EEEE
Q 034057 96 LAII 99 (105)
Q Consensus 96 Vaii 99 (105)
|.+.
T Consensus 72 l~v~ 75 (86)
T 2kzr_A 72 LIVE 75 (86)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8764
No 127
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=83.54 E-value=0.73 Score=29.47 Aligned_cols=26 Identities=4% Similarity=-0.031 Sum_probs=20.9
Q ss_pred eeEEEECCeecCCCCccCCCCEEEEE
Q 034057 74 CMVLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 74 ~~~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
.--++|||+.+...+.|++||.|.|=
T Consensus 79 ~ngt~vNg~~i~~~~~L~~GD~I~iG 104 (120)
T 1wln_A 79 DAETYVDGQRISETTMLQSGMRLQFG 104 (120)
T ss_dssp SSCEEETSCBCSSCEEECTTCEEEET
T ss_pred CCCEEECCEEcCCCEECCCCCEEEEC
Confidence 34578899888866799999999873
No 128
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=83.43 E-value=1.1 Score=30.34 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=23.4
Q ss_pred eEEEECCeec-CCCCccCCCCEEEEEcCC
Q 034057 75 MVLALNEEYT-NASVIVNEKDELAIIPPI 102 (105)
Q Consensus 75 ~~vaVNg~~v-~~d~~L~dGDeVaiiPPv 102 (105)
=.|.|||+.+ .+.+.+++||.|.|-.+.
T Consensus 76 G~V~VNG~~v~~ps~~V~~gD~I~V~~~~ 104 (159)
T 1c05_A 76 GHILVDGSRVNIPSYRVKPGQTIAVREKS 104 (159)
T ss_dssp TCEEETTEECCCSSCBCCTTCEEEECGGG
T ss_pred CCEEECCEEeCcCCcEeCCCCEEEEeCce
Confidence 3588999999 489999999999997553
No 129
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=82.09 E-value=1.5 Score=28.73 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=22.8
Q ss_pred EEEECCeecCC--CCccCCCCEEEEEcCCCC
Q 034057 76 VLALNEEYTNA--SVIVNEKDELAIIPPISG 104 (105)
Q Consensus 76 ~vaVNg~~v~~--d~~L~dGDeVaiiPPvsG 104 (105)
-.+|||+.+.. ...|++||+|.|=.|..+
T Consensus 76 GT~vNg~~l~~~~~~~L~~GD~I~lG~~~~~ 106 (138)
T 2pie_A 76 GVWLNRARLEPLRVYSIHQGDYIQLGVPLEN 106 (138)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEESCCCTT
T ss_pred CeEECCEEcCCCCcEECCCCCEEEECCCCCC
Confidence 46778887765 578999999999876544
No 130
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=81.79 E-value=7.7 Score=24.57 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=38.3
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCcc-CCCCEEEEE
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIV-NEKDELAII 99 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L-~dGDeVaii 99 (105)
...++++....|+.+|.+.+.+++. +..-.. ++...++.... ++-+ .+|+.|-++
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~G-ipp~~Q--Rli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYG-FPPVLQ--QWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC-CCGGGE--EEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred ceEEEEECCcChHHHHHHHHHHHhC-CCHHHE--EEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 4678888888999999999998862 211112 34556775542 5678 599998876
No 131
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=79.93 E-value=6.4 Score=24.72 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=36.0
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCee----cC----------------CCCc-cCCCCEEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEY----TN----------------ASVI-VNEKDELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~----v~----------------~d~~-L~dGDeVaiiP 100 (105)
...++++...|+.++++.|.++ |.+.=-.+.+.-.+++.- .. .... +.+||||.+-=
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~-p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNS-ASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHC-TTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred cEEEEECCchhHHHHHHHHHhC-hHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 4568888889999999999984 333211344544443321 11 1233 78999998853
No 132
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=79.29 E-value=3.8 Score=28.84 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=37.6
Q ss_pred ceEEEeCCCCCHHHHHHHHHHh-CCCchh---hc----ceeEEEECCeecC-CCCccCC--CCEEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIAR-FPNLEE---IR----GCMVLALNEEYTN-ASVIVNE--KDELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~-~p~l~~---~~----~~~~vaVNg~~v~-~d~~L~d--GDeVaiiP 100 (105)
+.+++++++.||-|++..+... .|.+.- .+ ..+.+.|||+.+. -.+.+.+ |+.+.|-|
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~~~~~~~~g~~~~ie~ 93 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLP 93 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBGGGCTTSEEEEEC
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCCeecchhCcHhHcCCCeEEEec
Confidence 4567777889999999988755 344321 11 2568889998753 2455555 56666654
No 133
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=78.80 E-value=4.1 Score=28.67 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred eEEEEEecHHhHhhcC-CCceEEEeCCCCCHHHHHHHHHHh-CCCchhh-------cceeEEEECCeecC-CCCccCCC
Q 034057 25 IQIKVLFFARARDLTG-LTDMPLEVSCGSTTQDCLNKLIAR-FPNLEEI-------RGCMVLALNEEYTN-ASVIVNEK 93 (105)
Q Consensus 25 m~V~V~~fg~lre~~g-~~~~~vev~~~~tv~dLl~~L~~~-~p~l~~~-------~~~~~vaVNg~~v~-~d~~L~dG 93 (105)
|+++|+=|..-.+..+ ....+++++.+.||-+++..+... .|.+.-. =..+.|.|||+.+. =.+.+.+|
T Consensus 6 ~~~~i~R~~~~~~~~~~~~~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~~~~~~~ 84 (243)
T 1kf6_B 6 LKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDY 84 (243)
T ss_dssp EEEEEEECCTTTCSSCEEEEEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCBGGGC
T ss_pred EEEEEEEcCCCCCCCCeeEEEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCEEEeeeeeEHhhC
Confidence 4444444433322221 234677788899999999998755 3443210 12578889998753 35666665
No 134
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=78.70 E-value=6.1 Score=29.58 Aligned_cols=67 Identities=10% Similarity=0.197 Sum_probs=42.8
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEE---ECCeecCC-----CCccCCC
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLA---LNEEYTNA-----SVIVNEK 93 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~va---VNg~~v~~-----d~~L~dG 93 (105)
+.+|+|+|++- | ....++++...|+.+|.+.|.+... +..-++ .+. ..|..... +..|++|
T Consensus 3 ~~~i~i~Vk~~-------g-~~~~v~v~~~~Tv~~lK~~I~~~tg-Vpp~~Q--kLi~~k~~Gk~l~D~~~L~~~~ik~g 71 (320)
T 3shq_A 3 VKEVVVIVKWS-------G-KEYPVDLTDQDTVEVLRHEIFRKTQ-VRPERQ--KLLNLKYKGKTAADNVKISALELKPN 71 (320)
T ss_dssp -CEEEEEEEET-------T-EEEEEEEETTSBHHHHHHHHHHHHC-CCGGGC--EETTCBSSSSBCCTTSBTTSSCCC--
T ss_pred CceEEEEEEEC-------C-EEEEEEECCCCcHHHHHHHHHHHHC-cCHHHe--EEeecccCCcccCccccHHHcCCCCC
Confidence 45688999862 3 4678899888999999999987642 111122 223 46766543 3567889
Q ss_pred CEEEEE
Q 034057 94 DELAII 99 (105)
Q Consensus 94 DeVaii 99 (105)
..|.++
T Consensus 72 ~~l~L~ 77 (320)
T 3shq_A 72 FKLMMV 77 (320)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 988876
No 135
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=77.76 E-value=2.2 Score=30.22 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.8
Q ss_pred eeEEEECCeecC-CCCccCCCCEEEEEc
Q 034057 74 CMVLALNEEYTN-ASVIVNEKDELAIIP 100 (105)
Q Consensus 74 ~~~vaVNg~~v~-~d~~L~dGDeVaiiP 100 (105)
.=.|.|||+.+. +.+.|.+||.|.|-.
T Consensus 123 ~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 123 HGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp TTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred CCCEEECCEEeCcCCcCcCCCCEEEEcC
Confidence 335899999995 899999999999864
No 136
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=76.75 E-value=4.9 Score=28.17 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=41.1
Q ss_pred eEEEEEecHHhHhhcC-CCceEEEeCC--CCCHHHHHHHHHHhCCCchhhc-------ceeEEEECCeecC-CCCccCC
Q 034057 25 IQIKVLFFARARDLTG-LTDMPLEVSC--GSTTQDCLNKLIARFPNLEEIR-------GCMVLALNEEYTN-ASVIVNE 92 (105)
Q Consensus 25 m~V~V~~fg~lre~~g-~~~~~vev~~--~~tv~dLl~~L~~~~p~l~~~~-------~~~~vaVNg~~v~-~d~~L~d 92 (105)
|+++|+=|.+-.+..+ ....++++++ +.||-++++.+....|.+.-.. ..+.|.|||+.+- =.+++.+
T Consensus 3 ~~~~i~R~~~~~~~~~~~~~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~~ 81 (238)
T 2wdq_B 3 LEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISA 81 (238)
T ss_dssp EEEEEEECCTTTCSSCEEEEEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBGGG
T ss_pred EEEEEEEcCCCCCCCCceEEEEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEECCEEEcccccchhh
Confidence 5556655544333222 2345677777 8999999998876666543211 1578899998752 2344444
No 137
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=76.39 E-value=2.6 Score=27.40 Aligned_cols=24 Identities=13% Similarity=-0.034 Sum_probs=18.3
Q ss_pred eEEEECCeecCCC--CccCCCCEEEE
Q 034057 75 MVLALNEEYTNAS--VIVNEKDELAI 98 (105)
Q Consensus 75 ~~vaVNg~~v~~d--~~L~dGDeVai 98 (105)
--.+|||+.+... ..|++||+|.|
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEE
Confidence 3466788777654 47999999987
No 138
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=75.00 E-value=2.1 Score=34.10 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=36.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCC-----CCEEEEEc
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNE-----KDELAIIP 100 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~d-----GDeVaiiP 100 (105)
.++++.++.||-|+|..|. .|. ++..+.+.|||+..-..+.+++ |++|.|-|
T Consensus 45 y~v~~~~~~~vLd~L~~ik----~l~-fr~sCam~ING~~~la~t~~~~~~~~~~~~i~ieP 101 (514)
T 3kwl_A 45 YFLEYQEDQYLLDLLKQLK----GVS-YSENIALKINQIAVFEDAKVSDLVAFFSKEWVLDP 101 (514)
T ss_dssp EEEECCTTCBHHHHHTTST----TCC-CCSSCCEEETTEEECSCCBHHHHHHHHCSEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHhh----hCe-eeccceEEECCEehhhhhhHHHHhhccCCcEEEEE
Confidence 3456667889999888876 232 3337999999998644555544 78888876
No 139
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=74.54 E-value=7.1 Score=24.11 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=29.8
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCC
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFP 66 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p 66 (105)
...|+||+.|-|. -..+.++..++..+|.+.+.+.++
T Consensus 4 ~~~vkvK~~~~gd--------i~~~~v~~~i~~~~L~~kv~~~~~ 40 (89)
T 1vd2_A 4 GSQVRVKAYYRGD--------IMITHFEPSISFEGLCNEVRDMCS 40 (89)
T ss_dssp SSCEEEEEESSSC--------EEEEEECTTCCHHHHHHHHHHHTT
T ss_pred CCeEEEEEEeCCe--------EEEEECCCCCCHHHHHHHHHHHhC
Confidence 3458888888775 346677888999999999999886
No 140
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=73.85 E-value=26 Score=27.29 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=45.2
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCch----h-hcceeEEEEC----------------C
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLE----E-IRGCMVLALN----------------E 81 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~----~-~~~~~~vaVN----------------g 81 (105)
..+.|++... ......+..+.++.|.++-++++...+. |.|. + ....++-.|| |
T Consensus 315 ~~I~VtytV~----~~~~~~~~~Vtv~~gssll~vLk~A~e~-~~F~F~~~es~~G~fItSInG~~~~~~~YW~l~~~p~ 389 (414)
T 2bb6_A 315 KFIDVLLKVS----GISPSYRHSVSVPAGSSLEDILKNAQEH-GRFRFRTQASLSGPFLTSVLGRKAGEREFWQVLRDPD 389 (414)
T ss_dssp CEEEEEEEEE----SSSSCEEEEEEEETTCCHHHHHHHHHHS-SSCCEEEECCTTSCEEEEETTEECCTTEEEEEEETTT
T ss_pred ceEEEEEEEe----eCCCccceEEEecCCCCHHHHHHHHHhc-cCCceEeeecCCCceEEEECCCccCCCceEEEEECCC
Confidence 4455555554 2223445688899999999999998887 5442 1 1123344444 4
Q ss_pred eecC---CCCccCCCCEEEE
Q 034057 82 EYTN---ASVIVNEKDELAI 98 (105)
Q Consensus 82 ~~v~---~d~~L~dGDeVai 98 (105)
+.++ .++.+++||.|.|
T Consensus 390 ~pl~~Gv~~y~~~~ge~I~f 409 (414)
T 2bb6_A 390 TPLQQGIADYRPKDGETIEL 409 (414)
T ss_dssp EECSSCTTTCCCCTTCEEEE
T ss_pred CcccccccceecCCCCEEEE
Confidence 4443 3688999999987
No 141
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.68 E-value=12 Score=22.46 Aligned_cols=70 Identities=13% Similarity=-0.005 Sum_probs=40.6
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE-CCee---c-C-----CCCccCC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL-NEEY---T-N-----ASVIVNE 92 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV-Ng~~---v-~-----~d~~L~d 92 (105)
+.+.++|..-+. . ...+++++...||.+|.+.|..... +..-...+.+.= +|.. . . .++-+.+
T Consensus 6 ~~v~l~I~~~~~--~----~~~~~~v~~~~TV~~lK~ki~~~~g-ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~ 78 (95)
T 1v6e_A 6 SGVMVFISSSLN--S----FRSEKRYSRSLTIAEFKCKLELVVG-SPASCMELELYGADDKFYSKLDQEDALLGSYPVDD 78 (95)
T ss_dssp CCEEEEEEETTS--S----SCEEEEECTTSBHHHHHHHHHHHTC-SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCT
T ss_pred cEEEEEEEECCC--C----eeEEEEcCccCHHHHHHHHHHHHHC-CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCC
Confidence 335666665311 1 2578889888999999999998762 211111111110 1232 1 2 2567889
Q ss_pred CCEEEEE
Q 034057 93 KDELAII 99 (105)
Q Consensus 93 GDeVaii 99 (105)
|++|.+.
T Consensus 79 g~~l~v~ 85 (95)
T 1v6e_A 79 GCRIHVI 85 (95)
T ss_dssp TCEEEEB
T ss_pred CCEEEEE
Confidence 9998775
No 142
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=73.07 E-value=1.7 Score=26.94 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=18.1
Q ss_pred EEEECCeecCCCCccCCCCEEEE
Q 034057 76 VLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVai 98 (105)
-.+|||+.+.....|++||+|.|
T Consensus 70 Gt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 70 GVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp CCEETTEECSSEEECCTTCCEEE
T ss_pred CeEECCEECCCCeECCCCCEEEE
Confidence 35678877776678999999976
No 143
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=72.33 E-value=6.7 Score=24.83 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHhCCCchh
Q 034057 52 STTQDCLNKLIARFPNLEE 70 (105)
Q Consensus 52 ~tv~dLl~~L~~~~p~l~~ 70 (105)
.++.+|...+...||.+..
T Consensus 42 ~s~~~L~~~V~~lFp~l~~ 60 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRP 60 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCS
T ss_pred ccHHHHHHHHHHHccccCC
Confidence 4799999999999998763
No 144
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=72.32 E-value=2.3 Score=27.99 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.6
Q ss_pred EEEECCeecCC--CCccCCCCEEEEEcCC
Q 034057 76 VLALNEEYTNA--SVIVNEKDELAIIPPI 102 (105)
Q Consensus 76 ~vaVNg~~v~~--d~~L~dGDeVaiiPPv 102 (105)
-.+|||+.+.. ...|++||+|.|=.|.
T Consensus 84 GT~vNg~~i~~~~~~~L~~GD~I~iG~~~ 112 (145)
T 2csw_A 84 GVWLNRARLEPLRVYSIHQGDYIQLGVPL 112 (145)
T ss_dssp CEEESSCBCCBTCCEECCSSCCEEESCCC
T ss_pred CeEECCEECCCCccEECCCCCEEEECCCC
Confidence 45677777765 4789999999997764
No 145
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=72.11 E-value=2.1 Score=34.90 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=41.3
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 45 PLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 45 ~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
..+++.++|+.++...+... ++ ...++..|||+.++.+++|..+.+|.++..
T Consensus 11 ~~~~~~~~t~~~~a~~i~~~---~~--~~~~~~~vng~~~dl~~~l~~d~~~~~~~~ 62 (642)
T 1qf6_A 11 QRHYDHAVSPMDVALDIGPG---LA--KACIAGRVNGELVDACDLIENDAQLSIITA 62 (642)
T ss_dssp EEECSSCBCHHHHHHHHCHH---HH--HHCSEEEETTEEEETTSCBCSCEECCEECT
T ss_pred eEEecCCCCHHHHHHHhchh---hh--hheEEEEECCEEeccccccCCCceEEEeec
Confidence 47788899999999887543 33 245677899999999999999999988753
No 146
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=71.97 E-value=2.3 Score=28.16 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.2
Q ss_pred EEECCeecCC-CCccCCCCEEEEE
Q 034057 77 LALNEEYTNA-SVIVNEKDELAII 99 (105)
Q Consensus 77 vaVNg~~v~~-d~~L~dGDeVaii 99 (105)
.+|||+.+.. ...|++||+|.|=
T Consensus 89 T~VNg~~i~~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 89 TFINGNRLVKKDYILKNGDRIVFG 112 (151)
T ss_dssp EEETTEECCSSCEEECSSEEEEET
T ss_pred eEECCEEcCCCceECCCCCEEEEC
Confidence 5677777766 4789999999874
No 147
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=71.04 E-value=2.2 Score=26.10 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=17.2
Q ss_pred EEEECCeecCCCCccCCCCEEEE
Q 034057 76 VLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVai 98 (105)
-.+|||+.+. ...|++||+|.|
T Consensus 66 Gt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 66 GTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp CCEETTEECS-EEECCTTCEEEE
T ss_pred CEEECCEECc-eEECCCCCEEEE
Confidence 3567777765 678999999987
No 148
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=71.00 E-value=1.9 Score=28.11 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=17.5
Q ss_pred EEEECCeecCCCCccCCCCEEEEE
Q 034057 76 VLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
-.+|||+.+.. ..|++||+|.|=
T Consensus 83 GT~vNg~~i~~-~~L~~GD~I~iG 105 (131)
T 3hx1_A 83 GLMINGKKVQE-HIIQTGDEIVMG 105 (131)
T ss_dssp CEEETTEEESE-EECCTTCEEECS
T ss_pred ceEECCEEeEe-EECCCCCEEEEC
Confidence 45667776665 899999999874
No 149
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=70.65 E-value=2.4 Score=28.03 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=19.1
Q ss_pred EEECCeecCC--CCccCCCCEEEEEcC
Q 034057 77 LALNEEYTNA--SVIVNEKDELAIIPP 101 (105)
Q Consensus 77 vaVNg~~v~~--d~~L~dGDeVaiiPP 101 (105)
.+|||+.+.. ...|++||+|.|-.+
T Consensus 105 T~VNg~~i~~~~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 105 TFVNTELVGKGKRRPLNNNSEIALSLS 131 (149)
T ss_dssp EEETTEECCTTCEEECCTTEEEEESST
T ss_pred eEECCEECCCCCeEECCCCCEEEECCC
Confidence 5667777763 578999999998654
No 150
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=70.35 E-value=1.7 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.7
Q ss_pred EEEECCeecCCCCccCCCCEEEE
Q 034057 76 VLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVai 98 (105)
-.+|||+.+.....|++||+|.|
T Consensus 76 Gt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 76 PTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp CCEETTEECSSCEECCTTEEEEC
T ss_pred CEEECCEECCCcEEcCCCCEEEE
Confidence 45678888876688999999976
No 151
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=69.79 E-value=1.3 Score=35.99 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=40.0
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCccCCCCEEEEEcC
Q 034057 45 PLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVIVNEKDELAIIPP 101 (105)
Q Consensus 45 ~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~L~dGDeVaiiPP 101 (105)
..+++.++|+.++...+... ++ ...++..|||+.++.+++|..+.+|.|+..
T Consensus 13 ~~~~~~g~t~~~ia~~~~~~---~~--~~~v~~~vng~~~dl~~~l~~d~~v~~~~~ 64 (645)
T 1nyr_A 13 KKAFDKGTTTEDIAQSISPG---LR--KKAVAGKFNGQLVDLTKPLETDGSIEIVTP 64 (645)
T ss_dssp CCBCCTTCCHHHHHHTTCHH---HH--HHCCEEEETTEEECTTSCCCSCBCCCEECT
T ss_pred EEEecCCCCHHHHHHHhhhh---cc--cCeEEEEECCEEEeCCcccCCCCeEEEeec
Confidence 35677889999988776432 22 235778899999999999999999888753
No 152
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=69.73 E-value=2.7 Score=26.37 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=18.6
Q ss_pred EEECCeecCC--CCccCCCCEEEEEcC
Q 034057 77 LALNEEYTNA--SVIVNEKDELAIIPP 101 (105)
Q Consensus 77 vaVNg~~v~~--d~~L~dGDeVaiiPP 101 (105)
.+|||+.+.. ...|++||+|.|-.+
T Consensus 70 t~vng~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 70 TVINKLKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCCCCCCCCSSCCCCCTTCEEEEECC
T ss_pred cEECCEEcCCCCcEECCCCCEEEEecc
Confidence 4566666654 478999999999865
No 153
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=69.66 E-value=1 Score=32.69 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=0.7
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEEEcCCCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVaiiPPvsGG 105 (105)
.+..+.+...+.+..|++..+++.. +. ...+++.-||+.+.. +..+.|||.|.++.--.||
T Consensus 31 seV~FKIKrtTpL~KLM~AYcERqG-Ls--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 31 SEIFFKIKKTTPLRRLMEAFAKRQG-KE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp --------------------------------------------------------------------C
T ss_pred CEEEEEEccCChHHHHHHHHHHHhC-CC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 4678888878888888888877653 22 246788889988753 5679999999999877776
No 154
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=69.51 E-value=23 Score=27.56 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=39.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCch----h-hcceeE-----------------EEECCeecC---CCCccCCCCEEEE
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLE----E-IRGCMV-----------------LALNEEYTN---ASVIVNEKDELAI 98 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~----~-~~~~~~-----------------vaVNg~~v~---~d~~L~dGDeVai 98 (105)
..+.++.|.++-++++...+..|.|. + ....++ +.+||+... .++.+++||.|.|
T Consensus 315 ~~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~~~~~~YW~l~~~g~~~~~G~~~y~~~~gd~I~f 394 (399)
T 2pmv_A 315 INVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLNEGVADYIPFNHEHITA 394 (399)
T ss_dssp EEEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECSSCTTTCCCCTTCEEEE
T ss_pred eEEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccCcCCCeeEEEEECCeecccchhheecCCCCEEEE
Confidence 48999999999999999988866543 1 012334 444444443 3789999999987
Q ss_pred E
Q 034057 99 I 99 (105)
Q Consensus 99 i 99 (105)
-
T Consensus 395 ~ 395 (399)
T 2pmv_A 395 N 395 (399)
T ss_dssp E
T ss_pred E
Confidence 3
No 155
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=69.46 E-value=4.9 Score=25.45 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=35.4
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCC---C-----------ch-h--hcceeEEEECCeecC---CCCccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFP---N-----------LE-E--IRGCMVLALNEEYTN---ASVIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p---~-----------l~-~--~~~~~~vaVNg~~v~---~d~~L~dGDeVaii 99 (105)
+..++ +++.+|.++|+.... +. . ++ + -+..-.+.+||+.+. .++.|++||.|.|-
T Consensus 22 ~~~v~-t~g~tL~dvLk~~~~-ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 22 VFEFD-TDAKYLGEVLESENL-VDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EEEEE-ECCSBHHHHHHHTTC-EEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred EEEEc-CCccHHHHHHHHcCc-cccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEE
Confidence 34566 778899998876541 10 0 00 0 133445677888875 47999999999884
No 156
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=69.32 E-value=12 Score=27.62 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=45.3
Q ss_pred CCCceEEEEEecHHhH-hhcC-CCceEEEeCC-CCCHHHHHHHHHHh-CCCchh-------hcceeEEEECCeecC-CCC
Q 034057 21 KESSIQIKVLFFARAR-DLTG-LTDMPLEVSC-GSTTQDCLNKLIAR-FPNLEE-------IRGCMVLALNEEYTN-ASV 88 (105)
Q Consensus 21 ~~~~m~V~V~~fg~lr-e~~g-~~~~~vev~~-~~tv~dLl~~L~~~-~p~l~~-------~~~~~~vaVNg~~v~-~d~ 88 (105)
....++++|+=|-+-. +..+ ..+.+++++. +.||-|++..+... .|.+.- .=..+.|.|||+.+. -.+
T Consensus 32 ~~~~~~~~I~R~~p~~~~~~p~~~~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~~laC~t 111 (282)
T 3vr8_B 32 GKRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACIC 111 (282)
T ss_pred CCeeEEEEEEEeCCCCCCCCCCcEEEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEEecchhh
Confidence 3445666666555421 1112 2345667776 89999999887654 353321 114579999999864 234
Q ss_pred ccC--CCCEEEEE
Q 034057 89 IVN--EKDELAII 99 (105)
Q Consensus 89 ~L~--dGDeVaii 99 (105)
.+. .|+.+.|-
T Consensus 112 ~v~~~~~~~~tIe 124 (282)
T 3vr8_B 112 NIDQNTSKTTKIY 124 (282)
T ss_pred hHhHhcCCcEEec
Confidence 443 25555554
No 157
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=67.59 E-value=3.7 Score=28.88 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=21.0
Q ss_pred EEEECCeecC-CCCccCCCCEEEEE
Q 034057 76 VLALNEEYTN-ASVIVNEKDELAII 99 (105)
Q Consensus 76 ~vaVNg~~v~-~d~~L~dGDeVaii 99 (105)
.|.|||+.+. .++.|++||.|.+.
T Consensus 29 ~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 29 RVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp CEEETTEECCCTTCEECTTCCEEET
T ss_pred eEEECCEEeCCCCCCCCCCCEEEEe
Confidence 5789999996 89999999999874
No 158
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=66.68 E-value=2.5 Score=28.38 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEECCeecCC--CCccCCCCEEEEE
Q 034057 77 LALNEEYTNA--SVIVNEKDELAII 99 (105)
Q Consensus 77 vaVNg~~v~~--d~~L~dGDeVaii 99 (105)
.+|||+.+.. ...|++||+|.|.
T Consensus 85 T~VNg~ri~~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 85 SYLNNNRMIQGTKFLLQDGDEIKII 109 (158)
T ss_dssp CEETTEECCSSEEEECCSSCCEESC
T ss_pred eEECCEEcCCCceEEcCCCCEEEEe
Confidence 4678887776 4789999999984
No 159
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=66.60 E-value=3.8 Score=25.75 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.1
Q ss_pred EEEECCeecCCCCccCCCCEEEE
Q 034057 76 VLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVai 98 (105)
-.+|||+.+. ...|++||+|.|
T Consensus 74 Gt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 74 GTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp CEEETTEECS-EEEECTTCEEEE
T ss_pred CeEECCEEcc-eEECCCCCEEEE
Confidence 3567777766 578999999987
No 160
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=65.94 E-value=4 Score=30.16 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.4
Q ss_pred EEEECCeecCCCCccCCCCEEEEE
Q 034057 76 VLALNEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVaii 99 (105)
.|.|||+.+...+.|.+||.|.|-
T Consensus 32 ~V~VNG~~v~~~~~V~~gD~I~v~ 55 (290)
T 3dh3_A 32 NVFLNGKRATIGDQVKPGDVVKVN 55 (290)
T ss_dssp CEEETTEECCTTCEECTTCCEEET
T ss_pred CEEECCEEccCCcCcCCCCEEEec
Confidence 588999999889999999999874
No 161
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=65.59 E-value=5 Score=28.35 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=22.8
Q ss_pred ceeEEEECCeecC-CCCccCCCCEEEEEc
Q 034057 73 GCMVLALNEEYTN-ASVIVNEKDELAIIP 100 (105)
Q Consensus 73 ~~~~vaVNg~~v~-~d~~L~dGDeVaiiP 100 (105)
..=.|.|||+.+. +.+.+++||.|.|-.
T Consensus 112 ~~G~V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 112 NHRHILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp HTTCEEETTEECCCTTCBCCTTEEEEECS
T ss_pred hCCcEEeCCEEEeecceecCCCCEEEEcc
Confidence 3446889999985 789999999998854
No 162
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=64.03 E-value=4.2 Score=25.72 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=18.2
Q ss_pred EECCeecCCC--CccCCCCEEEEEc
Q 034057 78 ALNEEYTNAS--VIVNEKDELAIIP 100 (105)
Q Consensus 78 aVNg~~v~~d--~~L~dGDeVaiiP 100 (105)
.+||..+..+ ..|++||.+.++|
T Consensus 67 ~vng~~l~k~~~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 67 SIDSVVIGKDQEVKLQPGQVLHMVN 91 (102)
T ss_dssp EETTEECCBTCEEEECTTCCEEEET
T ss_pred eECCEEcCCCCeEEeCCCCEEEEcc
Confidence 4477776654 7899999999987
No 163
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=63.95 E-value=14 Score=26.13 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=44.1
Q ss_pred CceEEEEEecHHhHhh-c-CCCceEEEeCC-CCCHHHHHHHHHHh-CCCchhh---c----ceeEEEECCeecC-CCCcc
Q 034057 23 SSIQIKVLFFARARDL-T-GLTDMPLEVSC-GSTTQDCLNKLIAR-FPNLEEI---R----GCMVLALNEEYTN-ASVIV 90 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~-~-g~~~~~vev~~-~~tv~dLl~~L~~~-~p~l~~~---~----~~~~vaVNg~~v~-~d~~L 90 (105)
..++++|+=|..-.+. . ...+.+++++. +.||-|++..+... .|.|.-. . ..+.+.|||+.+. -.+.+
T Consensus 10 ~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~~~~ 89 (252)
T 2h88_B 10 RIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKI 89 (252)
T ss_dssp CEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGGGSBC
T ss_pred ceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCcEEccccCCH
Confidence 3455666655432221 1 12345667766 89999999988753 3443210 1 3468889999653 24444
Q ss_pred CC--CCEEEEEc
Q 034057 91 NE--KDELAIIP 100 (105)
Q Consensus 91 ~d--GDeVaiiP 100 (105)
.+ |+.+.|-|
T Consensus 90 ~~~~g~~~~iep 101 (252)
T 2h88_B 90 DPDLSKTTKIYP 101 (252)
T ss_dssp CCCTTSCEEEEC
T ss_pred hHcCCCceEEec
Confidence 44 55555543
No 164
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=63.81 E-value=4.2 Score=29.11 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.7
Q ss_pred EEECCeecCCCCccC-CCCEEEE
Q 034057 77 LALNEEYTNASVIVN-EKDELAI 98 (105)
Q Consensus 77 vaVNg~~v~~d~~L~-dGDeVai 98 (105)
+++||+.+.....|+ .||+|.|
T Consensus 137 vyvNg~~i~~~~~L~~~GD~I~i 159 (238)
T 1wv3_A 137 VYINYELQEQLTNKAYIGDHIYV 159 (238)
T ss_dssp EEETTEECCSSEEEEETTCEEEE
T ss_pred EEECCEEeccceeccCCcCEEEE
Confidence 679999998888999 9999987
No 165
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=63.79 E-value=5.7 Score=24.50 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=23.5
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCC--C-CCHHHHHHHHHHhCC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSC--G-STTQDCLNKLIARFP 66 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~--~-~tv~dLl~~L~~~~p 66 (105)
.|+|+|.|= .+.+-+|. + .|+++|.++-..+|-
T Consensus 2 ~MKvtV~fg----------~~~vvVPC~dg~~tV~~L~~~A~~RY~ 37 (85)
T 2ns5_A 2 EFKVTVCFG----------RTRVDVPCGDGRMKVFSLIQQAVTRYR 37 (85)
T ss_dssp CEEEEEEET----------TEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred ccEEEEEEC----------CEEEEEECCCCcccHHHHHHHHHHHHH
Confidence 488998763 24455554 3 599999998888883
No 166
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=63.43 E-value=20 Score=22.04 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=26.5
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeC-CCCCHHHHHHHHHHhCC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVS-CGSTTQDCLNKLIARFP 66 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~-~~~tv~dLl~~L~~~~p 66 (105)
.|.|+|+-. .|. ..++++ ...|+.+|.+.|.+..+
T Consensus 7 ~M~irvrs~------~G~--~~v~v~~~~~Tv~~LK~kI~~~~g 42 (107)
T 1wf9_A 7 GTMLRVRSR------DGL--ERVSVDGPHITVSQLKTLIQDQLQ 42 (107)
T ss_dssp CEEEEEECS------SCE--EEEEECCTTSBHHHHHHHHHHHSC
T ss_pred eEEEEEECC------CCC--EEEEECCCCCcHHHHHHHHHHHhC
Confidence 388888743 343 478888 78999999999998763
No 167
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=63.42 E-value=4.8 Score=28.52 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEECCeecC-CCCccCCCCEEEEE
Q 034057 76 VLALNEEYTN-ASVIVNEKDELAII 99 (105)
Q Consensus 76 ~vaVNg~~v~-~d~~L~dGDeVaii 99 (105)
.|.|||+.+. .++.|.+||+|.+.
T Consensus 28 ~V~VNG~~v~~~~~~v~~gD~I~v~ 52 (243)
T 1vio_A 28 AVKINGEIVKSGSVQISQEDEIYFE 52 (243)
T ss_dssp CEEETTEECCCTTCEECTTSCEEET
T ss_pred cEEECCEEeCCCCCCcCCCCEEEEe
Confidence 4789999994 89999999988874
No 168
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=63.36 E-value=3.2 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=17.8
Q ss_pred EEEECCeecCC--CCccCCCCEEEEE
Q 034057 76 VLALNEEYTNA--SVIVNEKDELAII 99 (105)
Q Consensus 76 ~vaVNg~~v~~--d~~L~dGDeVaii 99 (105)
-.+|||+.+.. ...|++||+|.|=
T Consensus 77 GT~vng~~l~~~~~~~L~~gd~i~lG 102 (118)
T 1uht_A 77 GTLLNSNALDPETSVNLGDGDVIKLG 102 (118)
T ss_dssp CCEESSSBCCTTCEEECCTTEEEEET
T ss_pred CeEECCEECCCCCeEEcCCCCEEEEC
Confidence 35677777765 4679999999873
No 169
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=63.13 E-value=5.8 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=20.5
Q ss_pred EEEECCeecCC--CCccCCCCEEEEEcCC
Q 034057 76 VLALNEEYTNA--SVIVNEKDELAIIPPI 102 (105)
Q Consensus 76 ~vaVNg~~v~~--d~~L~dGDeVaiiPPv 102 (105)
-.+|||+.+.. ...|++||+|.|=...
T Consensus 80 GT~vNg~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 80 GTWLNGQKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp CCEETTEECCTTCCEECCTTCEEEECTTS
T ss_pred CeEECCEEcCCCCeEEcCCCCEEEECCCc
Confidence 35678887765 4789999999986543
No 170
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=62.74 E-value=4.9 Score=27.00 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=19.4
Q ss_pred EEEECCeecCC--CCccCCCCEEEEEcC
Q 034057 76 VLALNEEYTNA--SVIVNEKDELAIIPP 101 (105)
Q Consensus 76 ~vaVNg~~v~~--d~~L~dGDeVaiiPP 101 (105)
-.+|||+.+.. ...|++||+|.|=..
T Consensus 108 GT~vNg~~i~~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 108 GTWLNGQKVEKNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp CEEETTEEECTTEEEECCTTCEEEESCS
T ss_pred CeEECCEEcCCCCceEcCCCCEEEECCC
Confidence 45677777765 378999999988543
No 171
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=62.00 E-value=36 Score=23.53 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=52.5
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai 98 (105)
.+.|+|+ + .| .+..+.+...+.+.-|++..+++.. +. ...+++..+|..+.. +-.+.++|.|.+
T Consensus 21 ~i~ikv~--~-----~~-~~v~~~i~~~~~l~kl~~~y~~~~g-~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~ 89 (209)
T 3uf8_A 21 HINLKVS--D-----GS-SEIFFKIKKTTPLRRLMEAFAKRQG-KE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 89 (209)
T ss_dssp EEEEEEE--C-----SS-CEEEEEEETTSCTHHHHHHHHHHHT-CC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred cEEEEEE--c-----CC-CEEEEEEeeCCHHHHHHHHHHHhhC-CC--hheEEEEECCEeccCCCChHHhhhcccccchh
Confidence 3666665 1 24 4678899888999999999988753 22 246789999999863 457889999999
Q ss_pred EcCCCCC
Q 034057 99 IPPISGG 105 (105)
Q Consensus 99 iPPvsGG 105 (105)
+-.-.||
T Consensus 90 ~~eq~Gg 96 (209)
T 3uf8_A 90 HREQIGG 96 (209)
T ss_dssp ECSCTTC
T ss_pred hcccccc
Confidence 8766664
No 172
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=61.29 E-value=28 Score=25.87 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=44.4
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCc--hhhcceeEEEE-CC-----eec----CC-CCcc
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNL--EEIRGCMVLAL-NE-----EYT----NA-SVIV 90 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l--~~~~~~~~vaV-Ng-----~~v----~~-d~~L 90 (105)
++..+|.+- .....+.++..+||.|++..+.+++|+. .++.++ .+++ ++ .-. .. ...+
T Consensus 3 ~~~~~~~~~--------~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y-~l~~~~~~~~~~~Wl~~~~~l~~y~~ 73 (371)
T 3ivf_A 3 ALSLKISIG--------NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDF-GLFLSDDDPKKGIWLEAGKALDYYML 73 (371)
T ss_dssp CEEEEEEET--------TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGE-EEEECCSSGGGCEECCTTSBGGGGTC
T ss_pred cEEEEEEec--------ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHC-eEeccCCCCCcCEeccCCCCHHHhCC
Confidence 466777763 2457888888899999999999999863 334333 3333 21 111 12 3578
Q ss_pred CCCCEEEEEc
Q 034057 91 NEKDELAIIP 100 (105)
Q Consensus 91 ~dGDeVaiiP 100 (105)
++|+.+.+-|
T Consensus 74 ~~~~~l~~~~ 83 (371)
T 3ivf_A 74 RNGDTMEYRK 83 (371)
T ss_dssp CTTCEEEEEE
T ss_pred CCCceeeccC
Confidence 8888887754
No 173
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=57.08 E-value=5.1 Score=26.45 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=15.6
Q ss_pred EEECCeecCCCCccCCCCEEEE
Q 034057 77 LALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 77 vaVNg~~v~~d~~L~dGDeVai 98 (105)
.+|||+.+. ...|++||+|.|
T Consensus 110 T~VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 110 TYVNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp CEETTEECS-EEECCTTEEEEE
T ss_pred eEECCEEcc-eEECCCCCEEEE
Confidence 356666665 578999999986
No 174
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=56.96 E-value=2.9 Score=28.85 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.2
Q ss_pred EEECCeecCC--CCccCCCCEEEE
Q 034057 77 LALNEEYTNA--SVIVNEKDELAI 98 (105)
Q Consensus 77 vaVNg~~v~~--d~~L~dGDeVai 98 (105)
.+|||..+.. ...|++||+|.|
T Consensus 109 T~VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 109 SYLNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp CEETTEECCSSEEEECCTTBCCEE
T ss_pred eEECCEEcCCCcceEcCCCCEEEE
Confidence 3567777665 478999999999
No 175
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=56.43 E-value=6.1 Score=26.74 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=15.2
Q ss_pred EEECCeecCCCCccCCCCEEEE
Q 034057 77 LALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 77 vaVNg~~v~~d~~L~dGDeVai 98 (105)
.+|||+.+. ...|++||+|.|
T Consensus 119 T~VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 119 TYVNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp EEETTBCCS-EEECCSSCEEEE
T ss_pred eEECCEEcc-eEECCCCCEEEE
Confidence 455665555 478999999986
No 176
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=56.32 E-value=3 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=10.7
Q ss_pred eeEEEECCeecCCCCccCCCCEEEEEcCCCCC
Q 034057 74 CMVLALNEEYTNASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 74 ~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsGG 105 (105)
.+.|.+||.+ |.++.+|.+--|++||
T Consensus 7 vY~iSvNGSP------La~~~ei~l~vPvG~G 32 (76)
T 2kdd_A 7 IYNISGNGSP------LADSKEIFLTVPVGGG 32 (76)
T ss_dssp -------------------CCSCEECCCSSSS
T ss_pred eEEEeecCCc------CCCCCceEEEeecCCC
Confidence 4578888875 5678888888888887
No 177
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=56.21 E-value=5.8 Score=26.88 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=16.1
Q ss_pred EEECCeecCCCCccCCCCEEEE
Q 034057 77 LALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 77 vaVNg~~v~~d~~L~dGDeVai 98 (105)
.+||++.+. ...|++||+|.|
T Consensus 129 T~VNG~~i~-~~~L~~GD~I~l 149 (157)
T 3oun_A 129 TTVNNAPVQ-EWQLADGDVIRL 149 (157)
T ss_dssp CEETTEECS-EEECCTTCEEEE
T ss_pred eEECCEECc-eEECCCCCEEEE
Confidence 456666665 578999999987
No 178
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=55.51 E-value=5.2 Score=27.76 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=24.1
Q ss_pred cceeEEEECCeecC-CCCccCCCC--EEEEE--cCCCCC
Q 034057 72 RGCMVLALNEEYTN-ASVIVNEKD--ELAII--PPISGG 105 (105)
Q Consensus 72 ~~~~~vaVNg~~v~-~d~~L~dGD--eVaii--PPvsGG 105 (105)
...=.|.|||+.+. +.+.+.+|| .|.+. .|+.||
T Consensus 129 I~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~~~s~~~~~ 167 (181)
T 2xzm_D 129 IRQRHIKVGKNLVNVPSFMVRTDSEKSIDFASTSPLGGG 167 (181)
T ss_dssp TTTTCCEETTEECCCSCCBCCSTTSSCEECTTSTTTTTC
T ss_pred HHCCEEEECCEEECCCCcCCCCCCceEEEEeCCCccCCC
Confidence 34446889999985 688999997 56653 456554
No 179
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=55.13 E-value=5.7 Score=25.84 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=17.5
Q ss_pred EEEECCeecCC----------CCccCCCCEEEE
Q 034057 76 VLALNEEYTNA----------SVIVNEKDELAI 98 (105)
Q Consensus 76 ~vaVNg~~v~~----------d~~L~dGDeVai 98 (105)
-.+|||+.+.. ...|++||+|.|
T Consensus 77 GT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 77 GTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp CCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 35678877763 578999999876
No 180
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.39 E-value=12 Score=26.05 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=23.7
Q ss_pred ceeEEEECCeecC-CCCccCCC--CEEEE--EcCCC
Q 034057 73 GCMVLALNEEYTN-ASVIVNEK--DELAI--IPPIS 103 (105)
Q Consensus 73 ~~~~vaVNg~~v~-~d~~L~dG--DeVai--iPPvs 103 (105)
..=.|.|||+.|. +.+.+.+| |.|.| -+|+.
T Consensus 126 ~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~s~i~ 161 (180)
T 3j20_D 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFA 161 (180)
T ss_dssp HHTCCEESSSBCCCSSCCCCTGGGGCEECSSCSSSS
T ss_pred HcCCeEECCEEeCCCCcccCCCCCCEEEEeCCCccc
Confidence 3346889999985 78999999 88988 44444
No 181
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=54.31 E-value=37 Score=21.18 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=49.6
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-C----ccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-V----IVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-~----~L~dGDeVai 98 (105)
.+.++|+ .. | .+..+.+...+.+.-|.+..+.+- ++. ...++++.+|..+..+ | .+.+||.|.+
T Consensus 21 ~IniKV~--~~-----g-~ev~FkIK~tt~l~KL~~aYc~r~-gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~ 89 (95)
T 2l76_A 21 LFPLKIR--CR-----A-DLVRLPLRMSEPLQSVVDHMATHL-GVS--PSRILLLFGETELSPTATPRTLKLGVADIIDC 89 (95)
T ss_dssp CEEEEEE--CS-----S-SEEEEEECSSSCTHHHHHHHHHHH-TSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEE
T ss_pred eEEEEEE--cC-----C-cEEEEEEecCChHHHHHHHHHhhc-CCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEE
Confidence 3777776 21 4 578888988888999999887763 222 3578999999999753 3 5999999998
Q ss_pred Ec
Q 034057 99 IP 100 (105)
Q Consensus 99 iP 100 (105)
+.
T Consensus 90 ~~ 91 (95)
T 2l76_A 90 VV 91 (95)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 182
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=54.17 E-value=6.9 Score=25.46 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=15.2
Q ss_pred EEECCeec--C--CCCccCCCCEEEE
Q 034057 77 LALNEEYT--N--ASVIVNEKDELAI 98 (105)
Q Consensus 77 vaVNg~~v--~--~d~~L~dGDeVai 98 (105)
.+|||+.+ . ....|++||+|.|
T Consensus 91 T~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 91 TQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp EEETTTTEEECTTCCEECCTTCEEEE
T ss_pred eEECCEEcccCCCCEEECCCCCEEEE
Confidence 55666553 2 3467999999986
No 183
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=52.68 E-value=16 Score=23.70 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHhCCCchh
Q 034057 52 STTQDCLNKLIARFPNLEE 70 (105)
Q Consensus 52 ~tv~dLl~~L~~~~p~l~~ 70 (105)
.+..+|...+...||.+..
T Consensus 57 ~s~~~L~~kV~~lFp~L~~ 75 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRP 75 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCS
T ss_pred CCHHHHHHHHHHHccccCC
Confidence 4889999999999998764
No 184
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=52.62 E-value=2.9 Score=31.01 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhC--CCchhhcceeEEEECCee-cCCCCccCCCCEEEEE
Q 034057 51 GSTTQDCLNKLIARF--PNLEEIRGCMVLALNEEY-TNASVIVNEKDELAII 99 (105)
Q Consensus 51 ~~tv~dLl~~L~~~~--p~l~~~~~~~~vaVNg~~-v~~d~~L~dGDeVaii 99 (105)
+.++..++....... ..+..+...=.|.|||+. +..++.|++||.|.+.
T Consensus 16 g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 16 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ----------------------------------------------------
T ss_pred CchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 345655554332111 122233333468899998 6789999999999885
No 185
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=51.75 E-value=24 Score=20.24 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=18.5
Q ss_pred eEEEECCeec--CCCCccCCCCEEEEEc
Q 034057 75 MVLALNEEYT--NASVIVNEKDELAIIP 100 (105)
Q Consensus 75 ~~vaVNg~~v--~~d~~L~dGDeVaiiP 100 (105)
+.|.-+++.+ ..++.|++||.|.++-
T Consensus 44 ~~I~R~~~~~~p~~~~~l~~GD~l~v~g 71 (86)
T 3jxo_A 44 AAIVRGGVLVVPRGDTEILSGDKLYVIV 71 (86)
T ss_dssp EEEEETTEEECCCTTCBCCTTCEEEEEE
T ss_pred EEEEECCEEECCCCCCEECCCCEEEEEE
Confidence 3444466654 3589999999999873
No 186
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=51.41 E-value=6.3 Score=26.51 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=17.2
Q ss_pred EEECCeecCC--CCccCCCCEEEEEc
Q 034057 77 LALNEEYTNA--SVIVNEKDELAIIP 100 (105)
Q Consensus 77 vaVNg~~v~~--d~~L~dGDeVaiiP 100 (105)
.+|||+.+.. ...|++||+|.|=.
T Consensus 119 T~VNg~ri~~~~~~~L~~GD~I~~G~ 144 (158)
T 3els_A 119 TCLNNVVIPGARYIELRSGDVLTLSE 144 (158)
T ss_dssp CEETTEECCTTCCEECCTTEEEESSS
T ss_pred cEECCEEcCCCceEEcCCCCEEEECC
Confidence 4566666655 36799999998753
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=51.01 E-value=3.2 Score=31.43 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred ccCCCCccccCCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC----
Q 034057 10 TGNSDSALVDNKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN---- 85 (105)
Q Consensus 10 ~~~~~~~~~~~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~---- 85 (105)
|-..|.....+....+.|+|+ + .| .+..+.+...+++.-|++..+++.. +. ...+++.-||+.+.
T Consensus 16 ~~~~~~~~~~~~~~~i~lkv~------~-~~-~~~~~~i~~~~~~~~l~~~y~~~~g-~~--~~~~~f~f~G~~i~~~~T 84 (389)
T 4da1_A 16 EAKPEVKPEVKPETHINLKVS------D-GS-SEIFFKIKKTTPLRRLMEAFAKRQG-KE--MDSLRFLYDGIRIQADQA 84 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCCCCCCCcEEEEEe------c-CC-cEEEEEECCCChHHHHHHHHHHHhC-CC--cceEEEEECCEEcCCCCC
Confidence 333444444444455556654 2 23 3567888777888888888877653 21 24577888888875
Q ss_pred -CCCccCCCCEEEEEcCCCCC
Q 034057 86 -ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 86 -~d~~L~dGDeVaiiPPvsGG 105 (105)
.+.-+.+||.|.+++--.||
T Consensus 85 p~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 85 PEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ---------------------
T ss_pred HHHcCCCCCCEeeeeeccccc
Confidence 35679999999998766665
No 188
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=50.84 E-value=7.2 Score=29.37 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.4
Q ss_pred EEEECCeecCCCCccCCCCEEEE
Q 034057 76 VLALNEEYTNASVIVNEKDELAI 98 (105)
Q Consensus 76 ~vaVNg~~v~~d~~L~dGDeVai 98 (105)
-.+|||+.+.....|++||+|.|
T Consensus 349 Gt~vng~~i~~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 349 GVHVQHERIRSAVTLNDGDHIRI 371 (388)
T ss_dssp CCEETTEECSSEEEECTTCEEEE
T ss_pred CeEECCEECCCceECCCCCEEEE
Confidence 45678887766788999999986
No 189
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=50.58 E-value=2.4 Score=30.19 Aligned_cols=27 Identities=26% Similarity=0.253 Sum_probs=22.2
Q ss_pred eeEEEECCeecC-CCCccCCCCEEEEEc
Q 034057 74 CMVLALNEEYTN-ASVIVNEKDELAIIP 100 (105)
Q Consensus 74 ~~~vaVNg~~v~-~d~~L~dGDeVaiiP 100 (105)
.=.|.|||+.+. +.+.|++||.|.|-.
T Consensus 119 ~G~V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 119 HKAIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp TTCCBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred CCCEEECCEEEccCCcCcCCCCEEEecC
Confidence 336889999985 899999999988753
No 190
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=49.94 E-value=43 Score=20.65 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=48.3
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCC-----ccCCCCEEEE
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASV-----IVNEKDELAI 98 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~-----~L~dGDeVai 98 (105)
-|.|.|.+... +...+.+..++++.|++++-+++|. +.. +.+.+.-|++.++++. -|..|..+.+
T Consensus 9 ~m~v~Vl~~n~-------rr~~VKvtp~t~L~~VL~eaC~K~g-l~~--~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLEL 78 (90)
T 2al3_A 9 GSAVSVLAPNG-------RRHTVKVTPSTVLLQVLEDTCRRQD-FNP--SEYDLKFQRTVLDLSLQWRFANLPNNAKLEM 78 (90)
T ss_dssp -CCEEEECTTS-------CEEEECCCTTSBHHHHHHHHHHHTT-CCG--GGCEEEETTEEESSSCBHHHHCCCSSCEEEE
T ss_pred ccEEEEEcCCC-------cEEEEEECCCCCHHHHHHHHHHHhC-CCh--hhCeEEeCCEeccccceeEecCCCCCCEEEE
Confidence 36788877653 4678888888999999999999884 221 3456778889988763 4677777776
Q ss_pred Ec
Q 034057 99 IP 100 (105)
Q Consensus 99 iP 100 (105)
.+
T Consensus 79 v~ 80 (90)
T 2al3_A 79 VP 80 (90)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 191
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=49.13 E-value=3.9 Score=26.64 Aligned_cols=22 Identities=5% Similarity=-0.040 Sum_probs=15.4
Q ss_pred EEECCeecC--CCCccCCCCEEEE
Q 034057 77 LALNEEYTN--ASVIVNEKDELAI 98 (105)
Q Consensus 77 vaVNg~~v~--~d~~L~dGDeVai 98 (105)
.+|||+.+. ....|++||+|.|
T Consensus 102 T~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 102 TFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp EESSSCEECSSSCCEECTTCCBBC
T ss_pred eEECCEECCCCccEECCCCCEEEE
Confidence 455665555 3578999999876
No 192
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=48.96 E-value=8 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=17.4
Q ss_pred EEECCeecCCC--CccCCCCEEEEEcC
Q 034057 77 LALNEEYTNAS--VIVNEKDELAIIPP 101 (105)
Q Consensus 77 vaVNg~~v~~d--~~L~dGDeVaiiPP 101 (105)
.+|||+.+... ..|++||+|.|=.+
T Consensus 166 TfVNG~rI~~~~~~~L~~GD~I~fG~s 192 (205)
T 3elv_A 166 TCLNNVVIPGARYIELRSGDVLTLSEF 192 (205)
T ss_dssp CEETTEECCBTSCEECCTTCEEESSSS
T ss_pred CeECCEECCCCceeECCCCCEEEECCC
Confidence 34566666544 47999999998654
No 193
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=47.89 E-value=55 Score=21.28 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=50.7
Q ss_pred EEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHH----HhCCCchhh-cceeEEEECCeecCCC--CccCC-----CCEE
Q 034057 29 VLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLI----ARFPNLEEI-RGCMVLALNEEYTNAS--VIVNE-----KDEL 96 (105)
Q Consensus 29 V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~----~~~p~l~~~-~~~~~vaVNg~~v~~d--~~L~d-----GDeV 96 (105)
+.|.|.=.-.+=+.-..+-+|..++.++|++... ..||+++.+ .+.+....||+...+| ..|.+ -+-|
T Consensus 25 LlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~l 104 (119)
T 3u52_E 25 LLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSML 104 (119)
T ss_dssp EEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEE
T ss_pred EEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheE
Confidence 5677776666667778999999999999887644 356888764 3567889999997543 34443 3555
Q ss_pred EEEcC
Q 034057 97 AIIPP 101 (105)
Q Consensus 97 aiiPP 101 (105)
.|-.|
T Consensus 105 rf~TP 109 (119)
T 3u52_E 105 TVTTP 109 (119)
T ss_dssp EEECT
T ss_pred EEeCC
Confidence 55544
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=47.72 E-value=13 Score=28.35 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=16.9
Q ss_pred CCeecCCCCccCCCCEEEEE
Q 034057 80 NEEYTNASVIVNEKDELAII 99 (105)
Q Consensus 80 Ng~~v~~d~~L~dGDeVaii 99 (105)
.|+.++.|+.|+|||.|.|+
T Consensus 355 ~~r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 355 QPQYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp SSEEECTTCBCCTTCEEEEE
T ss_pred CCCccCCCcEEcCCCEEEEE
Confidence 34567889999999999987
No 195
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=45.88 E-value=36 Score=20.88 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=25.2
Q ss_pred ceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 24 SIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
.|+||+.|=. .=..+-+|..+++.+|.+.|..+-
T Consensus 12 ~~KVK~yy~D--------DIiAIrvP~di~~~~L~dKi~~RL 45 (85)
T 1ip9_A 12 TTKIKFYYKD--------DIFALMLKGDTTYKELRSKIAPRI 45 (85)
T ss_dssp CEEEEECBTT--------CCEEEEECSCCCHHHHHHHHHHHH
T ss_pred ceEEEEEecC--------cEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566655432 346788999999999999998764
No 196
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=45.08 E-value=55 Score=20.50 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=34.4
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECC---eec----C-----CCCccCCCCEEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNE---EYT----N-----ASVIVNEKDELAII 99 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg---~~v----~-----~d~~L~dGDeVaii 99 (105)
..+++++...||.+|...|..... +.. ..-++...| ..+ . .++.|.+|++|.+.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~G-ip~--~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVG-TTV--DSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHC-CCT--TTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhC-CCH--HHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 467888888999999999988642 211 112233322 321 1 25778999999765
No 197
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=44.89 E-value=55 Score=20.44 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=32.7
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEE--ECC--eecCCCCcc--CCCCEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLA--LNE--EYTNASVIV--NEKDELAI 98 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~va--VNg--~~v~~d~~L--~dGDeVai 98 (105)
.-.+++..|.|++|.|....+.- +|. .+.|.|+ .+| ..++||+-+ =.|+||.+
T Consensus 29 rT~V~VrpG~tlrdAL~KaLk~R-~L~--pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~V 87 (95)
T 2l05_A 29 RTVVPARCGVTVRDSLKKALMMR-GLI--PECCAVYRIQDGEKKPIGWDTDISWLTGEELHV 87 (95)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHH-TCC--GGGEEEEEEETTEEEEECTTSBGGGGTTCEEEE
T ss_pred eEEEEecCCcCHHHHHHHHHHHc-CCC--HHHcEEEEcCCCCccccchhHhhhhccCcEEEE
Confidence 45788989999988876654432 121 2456666 345 667887532 23777654
No 198
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.19 E-value=59 Score=20.29 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
......+.++...|.+|+++.|.++.
T Consensus 18 Dgssksi~V~~~~Ta~dv~~~L~~K~ 43 (100)
T 1wgr_A 18 DGACRSVEVAAGATARHVCEMLVQRA 43 (100)
T ss_dssp TSCEEEEEECTTCCHHHHHHHHHCSS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHc
Confidence 34678999999999999999999876
No 199
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=43.01 E-value=2.2 Score=30.24 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=22.6
Q ss_pred EEEECCeecC-CCCccCCCCEEEE----EcCCCCC
Q 034057 76 VLALNEEYTN-ASVIVNEKDELAI----IPPISGG 105 (105)
Q Consensus 76 ~vaVNg~~v~-~d~~L~dGDeVai----iPPvsGG 105 (105)
.|.|||+.|. +.+.+.+||++.| =+|..||
T Consensus 135 hV~VNG~~V~~Ps~~V~~gde~~I~~~~~spyv~~ 169 (195)
T 3iz6_C 135 HIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGG 169 (195)
T ss_dssp STTTSCCCCCCCCCCCSSSCSSSSCSSSCCCCCCC
T ss_pred CEEECCEEeCCCCcCcCCCCEEEEEecCCCCCCCC
Confidence 5779999986 7889999998655 2456665
No 200
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=42.97 E-value=5.1 Score=30.82 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=0.0
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-----CCCccCCCCEEEEEcCCCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-----ASVIVNEKDELAIIPPISGG 105 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-----~d~~L~dGDeVaiiPPvsGG 105 (105)
.+..+.+...+++..|++..+++.. +. ...+++.-||+.+. .+.-+.|||+|.++.--.||
T Consensus 31 ~~v~FkIk~~t~l~kLm~aY~~r~G-~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 31 SEIFFKIKKTTPLRRLMEAFAKRQG-KE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cEEEEEEecCChHHHHHHHHHHHhC-CC--cceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 4677888877888999888877653 22 35678888998885 35679999999999887776
No 201
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=42.07 E-value=14 Score=28.11 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=15.0
Q ss_pred CccCCCCEEEEEcCCCC
Q 034057 88 VIVNEKDELAIIPPISG 104 (105)
Q Consensus 88 ~~L~dGDeVaiiPPvsG 104 (105)
..|++||+|+|+.|-+|
T Consensus 38 ~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCTTCEEEEECSSCC
T ss_pred CCCCCcCEEEEEeCCCC
Confidence 46999999999999876
No 202
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=41.17 E-value=13 Score=23.79 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=16.7
Q ss_pred EECCeecCC--CCccCCCCEEEEEc
Q 034057 78 ALNEEYTNA--SVIVNEKDELAIIP 100 (105)
Q Consensus 78 aVNg~~v~~--d~~L~dGDeVaiiP 100 (105)
.+||..+.. ...|++||.+.++|
T Consensus 73 ~vng~~l~k~~~~~L~~GD~leLl~ 97 (110)
T 2brf_A 73 TTGTQELKPGLEGSLGVGDTLYLVN 97 (110)
T ss_dssp EEC-CBCCTTCEEEEETTCEEEEET
T ss_pred EECCEEcCCCCEEEecCCCEEEEcc
Confidence 466665554 46799999999987
No 203
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=38.54 E-value=62 Score=24.93 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHHHHHhCCCchhhcceeEEEECCeecC--CCCccCCCCEEEEEc
Q 034057 58 LNKLIARFPNLEEIRGCMVLALNEEYTN--ASVIVNEKDELAIIP 100 (105)
Q Consensus 58 l~~L~~~~p~l~~~~~~~~vaVNg~~v~--~d~~L~dGDeVaiiP 100 (105)
+..|...+|...- -.+.+.-+|+.+- .++.|++||+|.|+-
T Consensus 174 l~~l~~~~p~~~~--~I~aI~R~g~~iiP~g~t~i~~gD~v~~i~ 216 (461)
T 4g65_A 174 LSALREHMPHIDT--RVAAIFRQGRPIRPQGTTIIEADDEVFFVA 216 (461)
T ss_dssp HHHHHHTSTTSCE--EEEEEEETTEEECCCTTCBCCTTCEEEEEE
T ss_pred HHHHHhhCCCCce--EEEEEEECCeeccCCCCceecCCCEEEEEe
Confidence 3344455554321 1345556787753 589999999999874
No 204
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=38.07 E-value=40 Score=20.82 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=28.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN 85 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~ 85 (105)
...+-++...|+.+++..|..+-. + +.+.++||+..++
T Consensus 29 k~KflV~~~~t~~~~~~~lRkrL~-l----~alFlyvn~~~~P 66 (96)
T 1wz3_A 29 QSKFKVSGSDKFANVIDFLRRQLH-S----DSLFVYVNSAFSP 66 (96)
T ss_dssp CCEEEEETTSBTHHHHHHHHHHHT-C----SSCEEEEEEEECC
T ss_pred ccEEEeCCCCcHHHHHHHHHHhcC-C----ceEEEEECCcccC
Confidence 346778888999999999987642 2 2577899986654
No 205
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.86 E-value=7.8 Score=22.58 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=19.7
Q ss_pred EEEECCeecC-CCCccCC--CCEEEEEc
Q 034057 76 VLALNEEYTN-ASVIVNE--KDELAIIP 100 (105)
Q Consensus 76 ~vaVNg~~v~-~d~~L~d--GDeVaiiP 100 (105)
.|.|||+.+. +.+.+.+ +|.|.+.+
T Consensus 34 ~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 34 HVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp CEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred cEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 5889999886 6788877 78887654
No 206
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=34.24 E-value=7.4 Score=24.80 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=14.4
Q ss_pred EEECCeecCCCCccCCCCEE
Q 034057 77 LALNEEYTNASVIVNEKDEL 96 (105)
Q Consensus 77 vaVNg~~v~~d~~L~dGDeV 96 (105)
|+|||+.+ -...|.+||.|
T Consensus 64 VFVNGqrv-~~~~I~~gDtI 82 (102)
T 3uv0_A 64 IFVNDQEE-TVVDIGMENAV 82 (102)
T ss_dssp EEETTEEE-SEEEECGGGCB
T ss_pred EEECCEEe-eeEEccCCccc
Confidence 67888877 66778888873
No 207
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=33.84 E-value=87 Score=19.54 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=32.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEEC----CeecCCCCccC--CCCEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALN----EEYTNASVIVN--EKDELA 97 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVN----g~~v~~d~~L~--dGDeVa 97 (105)
.-.+++..|.|+++.+....... +|. .+.|.|+.- +..++||+-+. .|+|+.
T Consensus 25 rT~V~VrpG~tlrdaL~KaLk~R-~L~--pe~C~Vy~~~~~~~~~I~WdtDi~~L~geEL~ 82 (96)
T 3ny5_A 25 RTVVPARCGVTVRDSLKKALMMR-GLI--PECCAVYRIQDGEKKPIGWDTDISWLTGEELH 82 (96)
T ss_dssp EEEEECCTTCBHHHHHHHHHHTT-TCC--GGGEEEEECC---CEEECTTBBGGGGTTCEEE
T ss_pred eEEEEecCCcCHHHHHHHHHHHc-CCC--hHHeEEEEccCCCcCcccccccchhcccceEE
Confidence 45788889999988776655432 221 245777754 46688875432 367764
No 208
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=33.62 E-value=31 Score=20.26 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=31.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCe---------ecCC-CCccCCCCEEEEEc
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEE---------YTNA-SVIVNEKDELAIIP 100 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~---------~v~~-d~~L~dGDeVaiiP 100 (105)
...++++...|+.+|++.+.+..+--.+ ...+.+... .... +.-|+.||.|.+.|
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~---~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNN---GFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFP 79 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTT---TCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC--
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCC---cceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEec
Confidence 4566777778999999999988752111 001111111 1111 34589999998876
No 209
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=32.87 E-value=74 Score=19.85 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=37.8
Q ss_pred CceEEEEEecHHhHhhcC-CCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCc
Q 034057 23 SSIQIKVLFFARARDLTG-LTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVI 89 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g-~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~ 89 (105)
..+-|-|.-.+. +-++ .....+-+|...|+++++..|..+-. +.. .+.+.++||+...+.+..
T Consensus 26 ~~IPVive~~~~--~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~-l~~-~~alfl~vn~~~p~~~~~ 89 (110)
T 2r2q_A 26 DRVPVIVEKAPK--ARVPDLDKRKYLVPSDLTVGQFYFLIRKRIH-LRP-EDALFFFVNNTIPPTSAT 89 (110)
T ss_dssp TEEEEEEEECTT--CCSCCCSCCEEEEETTCBHHHHHHHHHHHTT-CCT-TSCCEEEBTTBCCCTTSB
T ss_pred CceEEEEEecCC--CCCCccceeEEEeCCCCcHHHHHHHHHHHhc-CCC-CCcEEEEECCEecCccCh
Confidence 345566665542 1121 12345677888999999988877642 211 245678999986665543
No 210
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=32.04 E-value=58 Score=21.69 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=35.7
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchh-----hcceeEEEECCeecCC-CCccCC--CCEEEEEcCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEE-----IRGCMVLALNEEYTNA-SVIVNE--KDELAIIPPIS 103 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~-----~~~~~~vaVNg~~v~~-d~~L~d--GDeVaiiPPvs 103 (105)
...+++++.+.|+.++++... ...+.+. .=..+.|.|||+.+.- -+++.+ |.+|.-+-|++
T Consensus 12 ~~~~v~~~~~~tLL~~Lr~~~-gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~v~TiEgL~ 80 (161)
T 1rm6_C 12 RAREDLVPDNMLLLDYLRETV-GLTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESLA 80 (161)
T ss_dssp EEEEEEEETTCBHHHHHHHTT-CCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGSS
T ss_pred EEEEEecCCcCcHHHHHHHcC-CCcccccCCCCCCCCCCEEEECCcEEechHHHHHHhCCceEEEECCCC
Confidence 356677778899988876531 1111111 1135789999998642 344444 77776655554
No 211
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.97 E-value=97 Score=18.92 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=32.9
Q ss_pred ceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE--CC--eecCCCCccC--CCCEEEE
Q 034057 43 DMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL--NE--EYTNASVIVN--EKDELAI 98 (105)
Q Consensus 43 ~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV--Ng--~~v~~d~~L~--dGDeVai 98 (105)
.-.+++-.|.|++|.+......- +|. .+.|.|+. ++ ..++||+-+. .|+||.+
T Consensus 19 rT~V~VrpG~tlrdaL~KaLk~R-~L~--pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~V 77 (86)
T 1wxm_A 19 RTVVTVRDGMSVYDSLDKALKVR-GLN--QDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIV 77 (86)
T ss_dssp EEEEECCSSCBSHHHHHHHHHTT-TCC--SSSEEEEEESSSCEEEECSSSBSTTCSSCEEEE
T ss_pred eEEEEecCCcCHHHHHHHHHHHc-CCC--HHHeEEEEcCCCCccccchhHhhhhccCcEEEE
Confidence 45788999999998887665442 222 24566664 46 5678875332 3666643
No 212
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=29.51 E-value=90 Score=18.35 Aligned_cols=58 Identities=5% Similarity=0.055 Sum_probs=35.5
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECC------eecC-----CCCccCCCCEEEEE
Q 034057 40 GLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNE------EYTN-----ASVIVNEKDELAII 99 (105)
Q Consensus 40 g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg------~~v~-----~d~~L~dGDeVaii 99 (105)
+....+..++...|+.+|.+.|.....--.+ ..-+++.++ +... .++.+++|.+|-++
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~--~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPE--YMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGG--GEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHH--HEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 3344567788889999999999877631111 112333322 1222 25789999998765
No 213
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.49 E-value=89 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-CCCccCCCCEEEE
Q 034057 52 STTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 52 ~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
.|.+|....+.+. .|.|||+... ..+++.-+|.|.|
T Consensus 57 ~t~rEar~Iv~~~-----------~I~VdGKvr~d~~ypvG~mDVIsI 93 (243)
T 3j20_E 57 KTAREARKILNEG-----------KFLVDGRVRKDYKFPVGIMDVVSI 93 (243)
T ss_dssp SSHHHHHHHHHHC-----------SCEETTEECCCSSCEECTTCEEEE
T ss_pred cCHHHHHHHHHCC-----------cEEECCEEeccccCCcccceEEEe
Confidence 3556666666554 4889999985 5789999999987
No 214
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=29.47 E-value=41 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=16.9
Q ss_pred eCCCCCHHHHHHHHHHhCCC
Q 034057 48 VSCGSTTQDCLNKLIARFPN 67 (105)
Q Consensus 48 v~~~~tv~dLl~~L~~~~p~ 67 (105)
+++..|+.+++..|.++|+.
T Consensus 52 ~DG~rtv~eIv~~L~~~y~~ 71 (95)
T 3g2b_A 52 YDGTQSLAQIAQTLAAEFDA 71 (95)
T ss_dssp CCSSSCHHHHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHHcCC
Confidence 45567999999999999974
No 215
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=29.39 E-value=65 Score=23.17 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=28.7
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
|....+.++|.+... ...+++++..+|..||++.++.+-
T Consensus 13 ~~~~~~~~~V~lldg-------t~~~~~vd~~tt~~el~~~v~~~l 51 (296)
T 3qij_A 13 NLYFQGHCKVSLLDD-------TVYECVVEKHAKGQDLLKRVCEHL 51 (296)
T ss_dssp ----CCEEEEECTTS-------CEEEEECCTTCBHHHHHHHHHHHH
T ss_pred CCCceEEEEEEccCC-------CEEEEEECCCCCHHHHHHHHHHHc
Confidence 344557888887643 467899988899999999999875
No 216
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=29.07 E-value=23 Score=23.81 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=17.6
Q ss_pred EECCeecCCC--CccCCCCEEEEEc
Q 034057 78 ALNEEYTNAS--VIVNEKDELAIIP 100 (105)
Q Consensus 78 aVNg~~v~~d--~~L~dGDeVaiiP 100 (105)
.+||..+..+ ..|++||.+.|+|
T Consensus 73 ~vng~~L~k~~~~~L~~GD~LeLl~ 97 (143)
T 1yj5_C 73 TVGVHELKPGLSGSLSLGDVLYLVN 97 (143)
T ss_dssp EETTEECCTTCEEEECTTCEEESSS
T ss_pred EECCEEecCCCEEEecCCCEEEEec
Confidence 5677666544 6799999999876
No 217
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=29.00 E-value=70 Score=21.48 Aligned_cols=61 Identities=7% Similarity=0.089 Sum_probs=36.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchh-----hcceeEEEECCeecCC-CCccC--CCCEEEEEcCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEE-----IRGCMVLALNEEYTNA-SVIVN--EKDELAIIPPIS 103 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~-----~~~~~~vaVNg~~v~~-d~~L~--dGDeVaiiPPvs 103 (105)
...+++++.+.|+.++++... ...+.+. .=..+.|.|||+.+.- -+++. +|.+|.-+.+++
T Consensus 13 ~~~~~~v~~~~tLLd~LR~~l-gltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~TiEgL~ 81 (163)
T 1ffv_A 13 KAQEKAVEPRTLLIHFLREEL-NLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLA 81 (163)
T ss_dssp EEEEEEECTTCBHHHHHHHTS-CCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTS
T ss_pred EEEEEecCCCCcHHHHHHhcC-CCcccccCCCCCCCCCCEEEECCcEecchHhhHHHhCCceEEEECCCC
Confidence 356778888899988776521 1111110 1135789999998752 34444 687777666654
No 218
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=28.99 E-value=70 Score=21.75 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=19.0
Q ss_pred eEEEECCeec---CCCCccCCCCEEEEEc
Q 034057 75 MVLALNEEYT---NASVIVNEKDELAIIP 100 (105)
Q Consensus 75 ~~vaVNg~~v---~~d~~L~dGDeVaiiP 100 (105)
+.|.-+|+.+ ..++.|++||.|.++-
T Consensus 153 vaI~R~g~~i~~P~~dt~L~~GD~Liv~g 181 (205)
T 1vct_A 153 IAVRRGKRWIFGPNENFKIRAGDVLIGRG 181 (205)
T ss_dssp EEEEETTEEEESCCTTCBCCTTCEEEEEE
T ss_pred EEEEECCEEEeCCCCCCEECCCCEEEEEE
Confidence 3444467654 4699999999999874
No 219
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=28.86 E-value=1.2e+02 Score=19.46 Aligned_cols=59 Identities=7% Similarity=-0.063 Sum_probs=38.3
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCC-----CccCC-------CCEEEEEcCC
Q 034057 41 LTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNAS-----VIVNE-------KDELAIIPPI 102 (105)
Q Consensus 41 ~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d-----~~L~d-------GDeVaiiPPv 102 (105)
+....+++....||.+|.+.+..... +.. ..-++.-+|+....+ +-|.. +..|.+....
T Consensus 11 ktTI~ldve~sdTV~~lK~kI~~~~g-iPp--~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 11 KTTIFTDAKESSTVFELKRIVEGILK-RPP--DEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHC-CCG--GGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred CEEEEEEcCCCChHHHHHHHHHHHHC-CCH--HHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 44667788888899999999887642 111 122445688887654 44555 7788776544
No 220
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=28.79 E-value=1e+02 Score=18.75 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=33.0
Q ss_pred EEEEEecH--HhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC
Q 034057 26 QIKVLFFA--RARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN 85 (105)
Q Consensus 26 ~V~V~~fg--~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~ 85 (105)
+|+|+|=+ .+-.+ . ...+-++...|+++++..|..+-. ++.+.++||+..++
T Consensus 8 Kv~vrfk~~g~~P~l-~--k~KflV~~~~t~~~~v~~lRkrL~-----l~alFlyVNn~f~P 61 (91)
T 3w1s_C 8 KIQIKFQPIGSIGQL-K--PSVCKISMSQSFAMVILFLKRRLK-----MDHVYCYINNSFAP 61 (91)
T ss_dssp EEEEEEEECCC----------EEEEETTSBHHHHHHHHHHHHT-----CSCCEEEETTTBCC
T ss_pred eEEEEEEecCCCCcc-c--ccEEEcCCCCCHHHHHHHHHHhhC-----CceEEEEECCccCC
Confidence 45565543 43322 2 235678888999999999887632 15689999998765
No 221
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=28.69 E-value=98 Score=18.56 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=42.7
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEE-CCee---c-CC-----CCc
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLAL-NEEY---T-NA-----SVI 89 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaV-Ng~~---v-~~-----d~~ 89 (105)
-.+..++|.|+.-. ......+++++...||.+|.+.|..... +..-... +++- +|+. . .. ++.
T Consensus 11 ~~~~~v~l~It~s~-----~~~~~~~~~v~~~~TV~~LK~kI~~~~G-iP~~~Qr-L~~~~~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 11 GKSDFIKVNVSNSH-----NDAVAFEVKLAKDLTVAQLKTKLEILTG-GCAGTMK-VQVFKGDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCCCEEEEEEEESS-----CSCEEEEEEEETTCBHHHHHHHHHHHHC-SCTTTEE-EEEEETTEEEEECCCTTSBHHHHC
T ss_pred CCCCeEEEEEEECC-----CCceEEEEEeCccCHHHHHHHHHHHHHC-cCHHHeE-EEEecCCcccceeCCCCCCHhHCC
Confidence 34555667666521 1113577888888999999999987652 1111112 2222 2442 2 22 467
Q ss_pred cCCCCEEEEE
Q 034057 90 VNEKDELAII 99 (105)
Q Consensus 90 L~dGDeVaii 99 (105)
+.+|++|-+.
T Consensus 84 i~~gstihlv 93 (95)
T 2kjr_A 84 NSDGLRLHVV 93 (95)
T ss_dssp CSSSCEEEEE
T ss_pred cCCCCEEEEE
Confidence 8899998775
No 222
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=28.34 E-value=1.4e+02 Score=22.19 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=30.0
Q ss_pred eCCCCCHHHHHHHHHHh---C---CCchhh-cceeEEEECCeecC-------CCCccCCCCEEEE
Q 034057 48 VSCGSTTQDCLNKLIAR---F---PNLEEI-RGCMVLALNEEYTN-------ASVIVNEKDELAI 98 (105)
Q Consensus 48 v~~~~tv~dLl~~L~~~---~---p~l~~~-~~~~~vaVNg~~v~-------~d~~L~dGDeVai 98 (105)
+..|+|..||-+.+... + |..... -+ +.+++|...+. .+..|++||-|.|
T Consensus 66 ikpG~t~~el~~~~e~~i~~~~~~~~~~g~~FP-~ciSvN~~v~Hg~P~~~~~~~~L~~GDiV~I 129 (358)
T 3fm3_A 66 VRPGITLLEIVRSIEDSTRTLLKGERNNGIGFP-AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKI 129 (358)
T ss_dssp CCTTCBHHHHHHHHHHHHHHHTTTSGGGGEEEE-EEEEETTEEECCCCCTTCCCCBCCTTCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCcccCCCCC-cEEeeCCEEEecCCCCCCCCeEecCCCEEEE
Confidence 35578877775544321 1 211111 12 46789998762 3689999999875
No 223
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=27.55 E-value=78 Score=22.68 Aligned_cols=38 Identities=5% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCCCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 20 NKESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 20 ~~~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
+....+.++|.+.. | +..+.++..+|..||++.++.+-
T Consensus 18 ~~~~~~~~~V~lld------g--~~~~~v~~~t~~~el~~~v~~~l 55 (314)
T 1h4r_A 18 KQPKTFTVRIVTMD------A--EMEFNCEMKWKGKDLFDLVCRTL 55 (314)
T ss_dssp ---CEEEEEEECSS------C--EEEEEEETTCBHHHHHHHHHHHH
T ss_pred CCCCeeEEEEEeCC------c--eEEEEeCCCCcHHHHHHHHHHHh
Confidence 34567888888764 3 46688888899999999998765
No 224
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=27.49 E-value=1.1e+02 Score=25.55 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=33.6
Q ss_pred eEEEeCC---CCCHHHHHHHHHHhCCCchhhcceeEEEEC-------Cee-c--CCCCccCCCCEEEEEc
Q 034057 44 MPLEVSC---GSTTQDCLNKLIARFPNLEEIRGCMVLALN-------EEY-T--NASVIVNEKDELAIIP 100 (105)
Q Consensus 44 ~~vev~~---~~tv~dLl~~L~~~~p~l~~~~~~~~vaVN-------g~~-v--~~d~~L~dGDeVaiiP 100 (105)
..+.++. |.|+.++...+..++. .+.|+|- |+. + +.++.|.+||.+.++-
T Consensus 198 Y~v~l~s~~~G~Tf~ea~~~lr~k~g-------aiLIGI~r~~~~~~g~iilNP~~d~~I~~GD~LiVIa 260 (726)
T 3mt5_A 198 YTEYLSSAFVGLSFPTVCELCFVKLK-------LLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIA 260 (726)
T ss_dssp EEEECCGGGTTSBHHHHHHHHHHTTC-------CEEEEEEC------CCCEESCCTTCBCCTTCEEEEEE
T ss_pred EEEeCCcccCCCCHHHHHHHHHhhCC-------EEEEEEEecccCCCCeEEECCCCCcEECCCCEEEEEE
Confidence 3445543 6799999887776653 3566662 333 3 3589999999998873
No 225
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=26.45 E-value=1.1e+02 Score=18.44 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=41.6
Q ss_pred CCceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECC---eec----CC-----CCc
Q 034057 22 ESSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNE---EYT----NA-----SVI 89 (105)
Q Consensus 22 ~~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg---~~v----~~-----d~~ 89 (105)
+..+.+.|.. ........+++++...||.+|.+.|..... +.. ..-++..+| +.+ .. ++.
T Consensus 12 ~~~v~l~It~-----s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G-ip~--~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~ 83 (97)
T 2kj6_A 12 DDSVHLHITH-----ANLKSFSADARFSPQMSVEAVKEKLWKKCG-TSV--NSMALELYDDSGSKVAVLSDDSRPLGFFS 83 (97)
T ss_dssp CCCEEEEEEE-----TTSSCCCEEEEECTTCCHHHHHHHHHHHHC-CCT--TSEEEEEECSSSCBCCCSSGGGSCHHHHC
T ss_pred CceEEEEEEE-----CCCCceEEEEEeCCCChHHHHHHHHHHHHC-cCH--HHeEEEEecCCCcccceecCCcCCHHHCC
Confidence 3345565555 112224578899989999999999988652 111 112333333 331 11 467
Q ss_pred cCCCCEEEEE
Q 034057 90 VNEKDELAII 99 (105)
Q Consensus 90 L~dGDeVaii 99 (105)
|++|++|-++
T Consensus 84 I~~g~~Ihlv 93 (97)
T 2kj6_A 84 PFDGFRLHII 93 (97)
T ss_dssp CCSCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8899998764
No 226
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=26.37 E-value=77 Score=20.05 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=29.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCc
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVI 89 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~ 89 (105)
..+-+|...|+++++..|..+-. +.. .+.+.++||+...+.+..
T Consensus 47 ~KflVp~~~tv~~f~~~iRk~l~-l~~-~~alfl~vn~~~p~~~~~ 90 (117)
T 1eo6_A 47 RKYLVPSDITVAQFMWIIRKRIQ-LPS-EKAIFLFVDKTVPQSSLT 90 (117)
T ss_dssp CEEEEETTSBHHHHHHHHHHHHT-CCT-TSCCEEEBTTBCCCTTSB
T ss_pred eEEEcCCCCCHHHHHHhhHHhhc-CCC-CCcEEEEECCEecCccch
Confidence 45677888999999988776531 211 245678999986665543
No 227
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=26.24 E-value=1.1e+02 Score=19.06 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=26.1
Q ss_pred ceEEEEEecHHhHhhcC-CCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 24 SIQIKVLFFARARDLTG-LTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 24 ~m~V~V~~fg~lre~~g-~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
+++|||.|-..- .-+. ..-..+-++..++..+|+..+..++
T Consensus 5 sikVKv~y~~~~-~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 5 SILFRISYNNNS-NNTSSSEIFTLLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp CEEEEEEECSSC-SSCCCCEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cEEEEEEecCcc-cccccCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 377777764210 0000 1235677888999999999998775
No 228
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.70 E-value=1.1e+02 Score=19.44 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=30.4
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCCc
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASVI 89 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~~ 89 (105)
..+-+|...|+++++..|..+-. |.. .+.+.++||+...+.+..
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~-l~~-~~alFl~Vn~~~p~~~~~ 93 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQ-LEA-ESALFVYTNDTVLPSSAQ 93 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHT-CCT-TSCCEEEETTEECCTTSB
T ss_pred ceEEcCCCCCHHHHHHHHHHHhC-CCc-cceEEEEECCcCCCccch
Confidence 45678889999999998877631 111 245789999985555543
No 229
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=24.56 E-value=1.2e+02 Score=25.61 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCCceEEEeCC---CCCHHHHHHHHHHhCCCchhhcceeEEEE-------CCee-c--CCCCccCCCCEEEEEc
Q 034057 40 GLTDMPLEVSC---GSTTQDCLNKLIARFPNLEEIRGCMVLAL-------NEEY-T--NASVIVNEKDELAIIP 100 (105)
Q Consensus 40 g~~~~~vev~~---~~tv~dLl~~L~~~~p~l~~~~~~~~vaV-------Ng~~-v--~~d~~L~dGDeVaiiP 100 (105)
|.....+.++. |.|+.++...+..++. .+.|+| +|+. + +.++.|.+||.+.+|-
T Consensus 244 g~Eiy~v~l~s~~~G~Tf~ea~~~lr~k~g-------aiLIGI~r~~~~~~g~iilNP~~d~~L~~GD~LivIa 310 (798)
T 3naf_A 244 SNEMYTEYLSSAFVGLSFPTVCELCFVKLK-------LLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIA 310 (798)
T ss_dssp TBCCEEEECCGGGTTCBHHHHHHHHHHHTC-------CCEEEEEEECSSSCEEEEESCCTTCBCCTTCEEEECC
T ss_pred CcEEEEEeCCcccCCCCHHHHHHHHHHhCC-------EEEEEEEeccCCCCCeEEECCCCCCEECCCCEEEEEe
Confidence 33334555543 6799999888877663 245555 2333 2 3589999999988764
No 230
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=24.01 E-value=50 Score=23.78 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=29.4
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA 86 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~ 86 (105)
....+-++.|.|...+.+.|.+.+..+ +|.....+.++.+.++.
T Consensus 55 ~~~~l~LsgGstP~~~y~~L~~~~~~i-dw~~v~~f~~DEr~vp~ 98 (268)
T 3ico_A 55 GQALIVLTGGGNGIALLRYLSAQAQQI-EWSKVHLFWGDERYVPE 98 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHGGGS-CGGGEEEEESEEECSCT
T ss_pred CceEEEEecCCchhHHHHHHHHHhhhh-hheeeEEeecccccCCC
Confidence 356888999999999999999865222 33344455555555654
No 231
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structur comparisons, virus-viral protein complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Probab=24.00 E-value=42 Score=27.49 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=27.0
Q ss_pred ceeEEEECCeecCCCCccCCCCEEEEEcCCCC
Q 034057 73 GCMVLALNEEYTNASVIVNEKDELAIIPPISG 104 (105)
Q Consensus 73 ~~~~vaVNg~~v~~d~~L~dGDeVaiiPPvsG 104 (105)
+.-++.+||+.+.+..+...||.|.|..-+.|
T Consensus 219 ~~~~~~ldg~~irl~~pc~~gd~v~i~ty~dg 250 (602)
T 2fl8_A 219 EGELVPLDGFNIRLRQPCNIGDTVQIETFMDG 250 (602)
T ss_pred CCceeeccCceeeecCccccCCEEEEEEeecc
Confidence 35578999999999999999999999876544
No 232
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=23.66 E-value=1.6e+02 Score=23.81 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=33.9
Q ss_pred eEEEeCC---CCCHHHHHHHHHHhCCCchhhcceeEEEE---------CCee-c--CCCCccCCCCEEEEEc
Q 034057 44 MPLEVSC---GSTTQDCLNKLIARFPNLEEIRGCMVLAL---------NEEY-T--NASVIVNEKDELAIIP 100 (105)
Q Consensus 44 ~~vev~~---~~tv~dLl~~L~~~~p~l~~~~~~~~vaV---------Ng~~-v--~~d~~L~dGDeVaiiP 100 (105)
..+.++. |.|..++...+..++. .+.++| ++.+ + +.++.|++||++.++-
T Consensus 198 y~~~~~~~~~G~tf~e~~~~~~~~~~-------~iligi~~~~~~~~~~~~i~lNP~~~~~i~~~D~~~~Ia 262 (722)
T 4hpf_A 198 LTQRLSDDFAGMSFPEVARLCFLKMH-------LLLIAIEYKSLFTDGFCGLILNPPPQVRIRKNTLGFFIA 262 (722)
T ss_dssp CEEECCGGGTTCBHHHHHHHHHHHSC-------CEEEEEEC-------CCCCEESCCTTCBCCTTCEEEEEB
T ss_pred EEeeCCcccCCCCHHHHHHHHHhhcC-------eEEEEeecccccccCCCeEEECCCCCeEECCCCEEEEEE
Confidence 4555553 6899999888887764 344554 1222 2 3689999999998874
No 233
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=23.54 E-value=1.4e+02 Score=18.89 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=29.8
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASV 88 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~ 88 (105)
..+-+|...|+++++..|..+-. +.. .+.+.++||+...+.+.
T Consensus 49 ~KflVp~~~tv~qf~~~iRkrl~-l~~-~~alFl~Vn~~~p~~~~ 91 (118)
T 3rui_B 49 RKYLVPADLTVGQFVYVIRKRIM-LPP-EKAIFIFVNDTLPPTAA 91 (118)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTT-CCT-TCCEEEEBTTBCCCTTS
T ss_pred ceEEcCCCCCHHHHHHHHHHHhC-cCC-CccEEEEECCccCCccc
Confidence 45668999999999999987642 211 24578899986444443
No 234
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=23.51 E-value=1e+02 Score=21.91 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred EEEECCeecC-CCCccCCCCEEEE
Q 034057 76 VLALNEEYTN-ASVIVNEKDELAI 98 (105)
Q Consensus 76 ~vaVNg~~v~-~d~~L~dGDeVai 98 (105)
.|.|||+... ..+++.-+|.|+|
T Consensus 35 ~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 35 LVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CEEETTEECCCTTCEECTTCEEEE
T ss_pred CEEECCEEecccCCCccceeEEEe
Confidence 6899999985 5789999999998
No 235
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.28 E-value=81 Score=19.32 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=36.5
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC-----CCccCCCCEEEE-EcCCC
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA-----SVIVNEKDELAI-IPPIS 103 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~-----d~~L~dGDeVai-iPPvs 103 (105)
+...++++...|+.+|.+.|.+... +..-+..+..+-.|. ... ++.|++|+.+.+ +|+..
T Consensus 19 k~~~v~v~~~~TV~~LK~~I~~~tg-Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 19 RNVDVVLEDTCTVGEIKQILENELQ-IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHC-CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHC-CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 4678889888999999999987642 111122222112344 333 346788887766 66654
No 236
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=22.62 E-value=1.4e+02 Score=19.28 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=29.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCCCC
Q 034057 44 MPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNASV 88 (105)
Q Consensus 44 ~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~d~ 88 (105)
..+-+|...|+++++..|..+.. |.. .+.+.++||+...+.+.
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~-L~~-~~alFl~Vnn~lPs~s~ 97 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIH-LRP-EDALFFFVNNVIPPTSA 97 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTT-CCT-TSCCEEEBTTBCCCTTS
T ss_pred CEEEcCCCCEeeeehhhhHhhcC-CCc-cccEEEEECCccCCccc
Confidence 45678889999999999987752 211 24578899985444443
No 237
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=22.58 E-value=1.4e+02 Score=18.27 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.1
Q ss_pred CceEEEeCCCCCHHHHHHHHHHh
Q 034057 42 TDMPLEVSCGSTTQDCLNKLIAR 64 (105)
Q Consensus 42 ~~~~vev~~~~tv~dLl~~L~~~ 64 (105)
....+.+....+..+|+++|...
T Consensus 13 ~~l~l~~G~~i~~~~l~~~L~~~ 35 (106)
T 3fpn_B 13 LVVSLRVGMEIERNALLRRLVDI 35 (106)
T ss_dssp CCEEEETTCBCCHHHHHHHHHHT
T ss_pred CCeEEECCCCcCHHHHHHHHHHc
Confidence 45677777778999999999875
No 238
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=21.75 E-value=57 Score=23.16 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=40.0
Q ss_pred EEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCCchhhcceeEEEECCeecC-----C---CCccCCCCEEEE
Q 034057 28 KVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTN-----A---SVIVNEKDELAI 98 (105)
Q Consensus 28 ~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~-----~---d~~L~dGDeVai 98 (105)
+|.++|.+. .-..+....+.++.+-+...+. +.. ++....+.|.=||.... | ...|.+||+|.+
T Consensus 129 tV~V~G~V~-----~p~~v~~~~g~~~~dYi~~agg-~~~-Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~V 200 (236)
T 3p42_A 129 TITLLGAVS-----GAGQLPWLAGRSVTDYLQDHPR-LAG-ADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWL 200 (236)
T ss_dssp EEEEEESBT-----TCEEEECCTTCCHHHHHTTSCB-CTT-BCSSEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEE
T ss_pred EEEEEeecC-----CcCeEeecCCCCHHHHHHhCCC-CCC-CCCccEEEEeCCCCEEeccccccccCCCCCCCCCEEEE
Confidence 466666653 1346667788999998865431 221 22233456666898642 2 457999999976
No 239
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=21.59 E-value=1.3e+02 Score=21.12 Aligned_cols=33 Identities=9% Similarity=0.346 Sum_probs=25.8
Q ss_pred eEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 25 IQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 25 m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
+.++|.+.. | +.++.++..+|.+||++.++.+-
T Consensus 2 i~~~V~l~d------~--~~~~~v~~~tt~~el~~~v~~~l 34 (294)
T 1ef1_A 2 ISVRVTTMD------A--ELEFAIQPNTTGKQLFDQVVKTI 34 (294)
T ss_dssp EEEEEEETT------E--EEEEEECTTCBHHHHHHHHHHHH
T ss_pred EEEEEEECC------c--eEEEEECCCCcHHHHHHHHHHHc
Confidence 667777763 3 45688888899999999998864
No 240
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=20.88 E-value=59 Score=19.13 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.0
Q ss_pred CCCccCCCCEEEEEcCC
Q 034057 86 ASVIVNEKDELAIIPPI 102 (105)
Q Consensus 86 ~d~~L~dGDeVaiiPPv 102 (105)
.--.+..||+|.|+.|-
T Consensus 26 ~rN~f~~GD~iEi~~P~ 42 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPE 42 (89)
T ss_dssp ESSCBCTTCEEEEESTT
T ss_pred EcCCcCCCCEEEEEcCC
Confidence 45678999999999884
No 241
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=20.31 E-value=1.7e+02 Score=21.94 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHhCCCchhhcceeEEEECCeecCC---------------CCccCCCCEEEEEcCC
Q 034057 51 GSTTQDCLNKLIARFPNLEEIRGCMVLALNEEYTNA---------------SVIVNEKDELAIIPPI 102 (105)
Q Consensus 51 ~~tv~dLl~~L~~~~p~l~~~~~~~~vaVNg~~v~~---------------d~~L~dGDeVaiiPPv 102 (105)
..|+.++++....++|+ ..++..+++.+.. +.-++.||.|+++-|-
T Consensus 5 ~~tl~~~l~~~a~~~pd------~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 65 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPD------RTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65 (509)
T ss_dssp CCCHHHHHHHHHHHSTT------SEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred cCCHHHHHHHHHHHCCC------ceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 47899999999999985 2344445655431 3458899999998653
No 242
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=20.17 E-value=1.7e+02 Score=18.30 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=28.4
Q ss_pred CceEEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhCCC
Q 034057 23 SSIQIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARFPN 67 (105)
Q Consensus 23 ~~m~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~p~ 67 (105)
..++|+..|-|. ...++++.+....||...+...|..
T Consensus 19 ~dvRIKfE~~gE--------kRIi~f~RPv~f~el~~kv~~afGq 55 (100)
T 2npt_B 19 NDVRVKFEHRGE--------KRILQFPRPVKLEDLRSKAKIAFGQ 55 (100)
T ss_dssp CCEEEEEEETTE--------EEEEEECSSCCHHHHHHHHHHHHTS
T ss_pred cceEEEEEecCc--------eEEEecCCCccHHHHHHHHHHHhCC
Confidence 346666666543 4678999999999999999998864
No 243
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=20.13 E-value=1.3e+02 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=26.5
Q ss_pred EEEEEecHHhHhhcCCCceEEEeCCCCCHHHHHHHHHHhC
Q 034057 26 QIKVLFFARARDLTGLTDMPLEVSCGSTTQDCLNKLIARF 65 (105)
Q Consensus 26 ~V~V~~fg~lre~~g~~~~~vev~~~~tv~dLl~~L~~~~ 65 (105)
++-|++|.. ......+.|+..+|.+||+..|..+.
T Consensus 31 k~ivkv~~~-----D~ss~~l~V~~~~TA~dv~~~L~~k~ 65 (281)
T 4gmv_A 31 KLVIRVHMS-----DDSSKTMMVDERQTVRQVLDNLMDKS 65 (281)
T ss_dssp EEEEEEEET-----TSCEEEEEEETTCBHHHHHHHHHHHS
T ss_pred cEEEEEEec-----CCCEEEEEECCCCcHHHHHHHHHHhc
Confidence 344556544 23578999999999999999998865
Done!