Query 034058
Match_columns 105
No_of_seqs 113 out of 1243
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 8.5E-25 2.9E-29 122.2 10.9 80 25-104 18-97 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 7.3E-24 2.5E-28 120.5 11.3 81 24-104 4-84 (110)
3 2la6_A RNA-binding protein FUS 99.9 7.2E-23 2.5E-27 114.2 10.9 83 22-104 9-99 (99)
4 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4.8E-23 1.6E-27 111.8 9.8 82 23-104 4-85 (85)
5 2cqc_A Arginine/serine-rich sp 99.9 1.5E-22 5.1E-27 111.9 11.4 82 23-104 12-93 (95)
6 3md1_A Nuclear and cytoplasmic 99.9 2E-22 6.9E-27 108.9 10.9 78 27-104 2-79 (83)
7 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.5E-22 5E-27 110.3 10.3 81 24-104 4-84 (87)
8 2e5h_A Zinc finger CCHC-type a 99.9 1.3E-22 4.5E-27 112.0 10.2 82 23-104 13-94 (94)
9 2cpz_A CUG triplet repeat RNA- 99.9 2.8E-22 9.7E-27 114.4 11.6 83 22-104 21-103 (115)
10 2kxn_B Transformer-2 protein h 99.9 9.6E-23 3.3E-27 118.8 9.4 83 22-104 42-124 (129)
11 2khc_A Testis-specific RNP-typ 99.9 1.3E-22 4.6E-27 116.2 9.8 83 22-104 36-118 (118)
12 3p5t_L Cleavage and polyadenyl 99.9 3.6E-23 1.2E-27 113.6 7.0 78 27-104 2-81 (90)
13 2jrs_A RNA-binding protein 39; 99.9 3E-22 1E-26 113.4 10.9 83 22-104 22-104 (108)
14 2cq0_A Eukaryotic translation 99.9 2.1E-22 7.1E-27 113.0 10.0 83 22-104 11-93 (103)
15 2do4_A Squamous cell carcinoma 99.9 5.5E-22 1.9E-26 110.7 11.7 82 22-104 13-94 (100)
16 1x5u_A Splicing factor 3B subu 99.9 2.2E-22 7.5E-27 113.2 9.9 84 21-104 10-93 (105)
17 2x1f_A MRNA 3'-END-processing 99.9 2.4E-22 8.1E-27 111.5 9.8 79 26-104 2-80 (96)
18 2lxi_A RNA-binding protein 10; 99.9 2E-23 7E-28 115.0 5.3 79 26-104 1-81 (91)
19 3ulh_A THO complex subunit 4; 99.9 4.2E-22 1.4E-26 112.3 10.9 82 23-105 26-107 (107)
20 2dgo_A Cytotoxic granule-assoc 99.9 7.2E-22 2.5E-26 112.7 11.9 83 22-104 11-93 (115)
21 2lkz_A RNA-binding protein 5; 99.9 3.8E-23 1.3E-27 114.7 6.3 81 24-104 7-93 (95)
22 1whw_A Hypothetical protein ri 99.9 2.6E-22 8.9E-27 111.8 9.8 82 23-104 5-86 (99)
23 2dnz_A Probable RNA-binding pr 99.9 2.9E-22 9.9E-27 110.8 9.8 81 24-104 3-83 (95)
24 1p27_B RNA-binding protein 8A; 99.9 4E-22 1.4E-26 112.3 10.3 82 23-104 20-101 (106)
25 2ywk_A Putative RNA-binding pr 99.9 5.1E-22 1.7E-26 109.8 10.5 81 23-104 13-93 (95)
26 2dnm_A SRP46 splicing factor; 99.9 1E-22 3.5E-27 114.2 7.8 84 21-104 8-91 (103)
27 3ns6_A Eukaryotic translation 99.9 5.8E-23 2E-27 114.9 6.5 80 24-103 4-90 (100)
28 2div_A TRNA selenocysteine ass 99.9 6.1E-22 2.1E-26 110.3 10.4 81 24-104 7-92 (99)
29 4f25_A Polyadenylate-binding p 99.9 4.7E-22 1.6E-26 113.7 10.1 77 25-103 4-80 (115)
30 3n9u_C Cleavage and polyadenyl 99.9 5.2E-22 1.8E-26 119.0 10.8 80 25-104 54-135 (156)
31 2dgs_A DAZ-associated protein 99.9 5E-22 1.7E-26 110.7 10.0 82 22-104 6-87 (99)
32 1x4h_A RNA-binding protein 28; 99.9 8.2E-22 2.8E-26 111.8 10.6 83 22-104 11-99 (111)
33 3s7r_A Heterogeneous nuclear r 99.9 1.1E-21 3.8E-26 106.9 10.7 81 22-103 7-87 (87)
34 2cpf_A RNA binding motif prote 99.9 7.3E-22 2.5E-26 109.8 10.1 81 24-104 3-86 (98)
35 1x5t_A Splicing factor 3B subu 99.9 3.3E-22 1.1E-26 110.8 8.4 81 24-104 3-84 (96)
36 2dnh_A Bruno-like 5, RNA bindi 99.9 1.6E-21 5.4E-26 109.6 11.3 81 23-104 12-95 (105)
37 1u6f_A Tcubp1, RNA-binding pro 99.9 1.2E-21 4E-26 115.2 11.2 83 22-104 38-120 (139)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.2E-22 1.1E-26 111.9 8.1 82 23-104 9-90 (102)
39 1oo0_B CG8781-PA, drosophila Y 99.9 6.6E-22 2.3E-26 112.1 9.4 81 23-103 23-103 (110)
40 2fy1_A RNA-binding motif prote 99.9 7.1E-22 2.4E-26 113.2 9.6 82 22-104 3-84 (116)
41 2cqp_A RNA-binding protein 12; 99.9 4.7E-22 1.6E-26 110.6 8.4 82 23-104 12-93 (98)
42 1x4e_A RNA binding motif, sing 99.9 2.8E-22 9.5E-27 108.8 7.2 80 24-103 3-82 (85)
43 2dhg_A TRNA selenocysteine ass 99.9 1.5E-21 5.2E-26 109.5 10.5 81 23-104 6-88 (104)
44 3ucg_A Polyadenylate-binding p 99.9 1.1E-21 3.9E-26 107.1 9.5 78 26-104 6-83 (89)
45 2cph_A RNA binding motif prote 99.9 1.2E-21 4E-26 110.5 9.8 83 22-104 11-95 (107)
46 2jwn_A Embryonic polyadenylate 99.9 3.1E-22 1.1E-26 115.6 7.5 79 25-104 35-113 (124)
47 1x5s_A Cold-inducible RNA-bind 99.9 3.8E-22 1.3E-26 111.7 7.6 82 23-104 9-90 (102)
48 2ek1_A RNA-binding protein 12; 99.9 4.2E-22 1.4E-26 110.1 7.6 80 25-104 14-93 (95)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 1.9E-21 6.4E-26 114.2 10.6 81 23-103 60-140 (140)
50 2cpe_A RNA-binding protein EWS 99.9 1.1E-21 3.8E-26 111.6 9.3 83 22-104 11-101 (113)
51 2cqd_A RNA-binding region cont 99.9 1.8E-21 6.2E-26 111.2 10.2 82 21-103 12-93 (116)
52 2d9p_A Polyadenylate-binding p 99.9 2.1E-21 7.1E-26 108.9 10.2 80 23-104 12-91 (103)
53 2dgp_A Bruno-like 4, RNA bindi 99.9 6.8E-22 2.3E-26 111.3 8.2 83 22-104 9-94 (106)
54 2dng_A Eukaryotic translation 99.9 3E-21 1E-25 108.2 10.7 80 23-104 12-91 (103)
55 2do0_A HnRNP M, heterogeneous 99.9 3.7E-21 1.3E-25 109.5 11.2 81 23-104 12-92 (114)
56 4a8x_A RNA-binding protein wit 99.9 9.2E-22 3.1E-26 107.3 8.3 80 25-104 3-83 (88)
57 2lea_A Serine/arginine-rich sp 99.9 1.5E-22 5.2E-27 118.7 5.4 89 16-104 37-125 (135)
58 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.2E-21 1.4E-25 114.8 11.3 81 24-104 37-117 (156)
59 2dgv_A HnRNP M, heterogeneous 99.9 4E-21 1.4E-25 105.6 10.3 80 23-104 5-84 (92)
60 2dh8_A DAZ-associated protein 99.9 3.8E-21 1.3E-25 108.1 10.2 82 22-104 12-93 (105)
61 2kt5_A RNA and export factor-b 99.9 4.4E-21 1.5E-25 110.8 10.7 80 24-104 33-112 (124)
62 1s79_A Lupus LA protein; RRM, 99.9 1.2E-21 4.2E-26 110.1 7.9 78 23-102 8-85 (103)
63 2cq4_A RNA binding motif prote 99.9 6.1E-22 2.1E-26 112.9 6.8 78 25-103 24-101 (114)
64 1p1t_A Cleavage stimulation fa 99.9 2E-21 6.8E-26 109.0 8.8 80 25-104 7-86 (104)
65 3ex7_B RNA-binding protein 8A; 99.9 2E-21 6.9E-26 112.4 8.9 81 23-103 19-99 (126)
66 2cqi_A Nucleolysin TIAR; RNA r 99.9 8.4E-21 2.9E-25 106.4 10.9 81 22-104 11-91 (103)
67 1wi8_A EIF-4B, eukaryotic tran 99.9 3.3E-21 1.1E-25 108.3 9.1 79 24-104 13-92 (104)
68 2cq3_A RNA-binding protein 9; 99.9 1.2E-20 4E-25 105.8 11.3 81 22-104 11-91 (103)
69 2dgw_A Probable RNA-binding pr 99.9 8.2E-21 2.8E-25 104.2 10.2 79 23-104 7-85 (91)
70 2m2b_A RNA-binding protein 10; 99.9 6.6E-22 2.3E-26 115.4 6.1 81 23-104 20-106 (131)
71 2dgx_A KIAA0430 protein; RRM d 99.9 4E-21 1.4E-25 106.6 9.0 78 24-104 7-88 (96)
72 2mss_A Protein (musashi1); RNA 99.9 1E-21 3.5E-26 104.3 6.3 75 28-103 1-75 (75)
73 2err_A Ataxin-2-binding protei 99.9 2.9E-21 9.9E-26 109.5 8.3 82 21-104 24-105 (109)
74 2nlw_A Eukaryotic translation 99.9 2.4E-21 8.4E-26 109.1 7.8 81 22-104 11-98 (105)
75 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1E-21 3.5E-26 109.7 6.0 81 22-104 15-96 (100)
76 2wbr_A GW182, gawky, LD47780P; 99.9 5.4E-21 1.8E-25 103.8 8.5 74 25-104 6-79 (89)
77 2cqg_A TDP-43, TAR DNA-binding 99.9 3.6E-20 1.2E-24 103.8 12.1 80 23-104 12-91 (103)
78 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.3E-20 4.4E-25 113.7 11.0 81 23-103 69-149 (165)
79 1x4a_A Splicing factor, argini 99.8 2.6E-20 8.9E-25 105.3 11.4 80 22-104 18-97 (109)
80 2rs2_A Musashi-1, RNA-binding 99.8 5.6E-21 1.9E-25 108.3 8.6 82 22-104 21-102 (109)
81 1sjq_A Polypyrimidine tract-bi 99.8 1E-20 3.4E-25 106.4 9.3 77 22-104 12-90 (105)
82 2kn4_A Immunoglobulin G-bindin 99.8 7.7E-21 2.6E-25 113.7 9.3 81 24-104 68-148 (158)
83 1x5o_A RNA binding motif, sing 99.8 2.5E-20 8.7E-25 106.1 10.9 80 23-103 22-109 (114)
84 2krb_A Eukaryotic translation 99.8 2.6E-21 9E-26 104.2 6.4 73 26-100 1-80 (81)
85 2db1_A Heterogeneous nuclear r 99.8 8.7E-21 3E-25 108.9 8.8 79 23-103 14-95 (118)
86 2hgl_A HNRPF protein, heteroge 99.8 4.9E-21 1.7E-25 112.4 7.7 81 22-104 40-123 (136)
87 2cpi_A CCR4-NOT transcription 99.8 7.2E-21 2.5E-25 108.1 8.2 81 24-104 13-99 (111)
88 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-21 6E-26 103.8 5.3 76 27-103 1-76 (77)
89 3q2s_C Cleavage and polyadenyl 99.8 5.8E-21 2E-25 120.7 8.5 80 25-104 67-148 (229)
90 1x4b_A Heterogeneous nuclear r 99.8 5.5E-21 1.9E-25 109.2 7.5 79 25-104 26-104 (116)
91 4f02_A Polyadenylate-binding p 99.8 2.5E-20 8.6E-25 116.3 11.0 80 24-103 13-92 (213)
92 2ki2_A SS-DNA binding protein 99.8 8.8E-22 3E-26 107.9 3.7 77 27-104 2-78 (90)
93 1wg5_A Heterogeneous nuclear r 99.8 1E-20 3.4E-25 106.4 8.0 80 23-104 12-92 (104)
94 2g4b_A Splicing factor U2AF 65 99.8 3.6E-20 1.2E-24 111.5 10.9 102 3-104 69-172 (172)
95 3r27_A HnRNP L, heterogeneous 99.8 1.5E-20 5.2E-25 104.8 8.5 77 22-104 17-95 (100)
96 3md3_A Nuclear and cytoplasmic 99.8 3E-20 1E-24 111.1 10.5 102 3-104 60-165 (166)
97 1wel_A RNA-binding protein 12; 99.8 2.9E-21 9.9E-26 111.7 5.8 81 23-104 22-102 (124)
98 2jvr_A Nucleolar protein 3; RN 99.8 7.5E-21 2.6E-25 108.1 7.4 78 23-104 25-103 (111)
99 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-20 3.5E-25 106.1 7.5 79 23-104 12-90 (102)
100 2dis_A Unnamed protein product 99.8 1.1E-20 3.7E-25 106.8 7.5 81 24-104 6-90 (109)
101 2a3j_A U1 small nuclear ribonu 99.8 1.8E-20 6.2E-25 108.8 8.6 79 23-104 26-108 (127)
102 2dnn_A RNA-binding protein 12; 99.8 1.3E-20 4.3E-25 106.9 7.7 78 24-104 14-91 (109)
103 1x4c_A Splicing factor, argini 99.8 7.3E-20 2.5E-24 103.5 10.7 74 24-104 13-91 (108)
104 2ytc_A PRE-mRNA-splicing facto 99.8 4.4E-20 1.5E-24 100.0 9.3 76 23-104 9-85 (85)
105 2cpy_A RNA-binding protein 12; 99.8 1.2E-20 4.1E-25 107.6 7.2 80 23-104 12-92 (114)
106 2fc9_A NCL protein; structure 99.8 5.1E-20 1.8E-24 102.8 9.1 79 22-104 11-89 (101)
107 2jvo_A Nucleolar protein 3; nu 99.8 6E-20 2.1E-24 103.9 9.4 75 22-104 27-101 (108)
108 2xnq_A Nuclear polyadenylated 99.8 9.3E-20 3.2E-24 101.3 9.7 75 22-104 18-93 (97)
109 2dnq_A RNA-binding protein 4B; 99.8 1E-19 3.4E-24 99.7 9.8 74 23-104 5-78 (90)
110 2fc8_A NCL protein; structure 99.8 1.1E-19 3.8E-24 101.5 10.0 80 22-104 11-90 (102)
111 1fxl_A Paraneoplastic encephal 99.8 1.4E-19 4.8E-24 108.2 11.0 79 26-104 2-80 (167)
112 1iqt_A AUF1, heterogeneous nuc 99.8 5.5E-21 1.9E-25 101.4 4.1 75 28-103 1-75 (75)
113 2lmi_A GRSF-1, G-rich sequence 99.8 8.1E-21 2.8E-25 107.3 4.9 81 22-104 7-90 (107)
114 2qfj_A FBP-interacting repress 99.8 9.2E-20 3.2E-24 113.2 10.1 81 24-104 123-203 (216)
115 3lqv_A PRE-mRNA branch site pr 99.8 9.6E-20 3.3E-24 103.8 9.4 78 24-104 6-83 (115)
116 2j8a_A Histone-lysine N-methyl 99.8 3.9E-20 1.3E-24 106.7 7.7 78 27-104 3-94 (136)
117 2e5j_A Methenyltetrahydrofolat 99.8 7.2E-20 2.5E-24 101.6 8.5 78 22-104 15-92 (97)
118 1b7f_A Protein (SXL-lethal pro 99.8 9.7E-20 3.3E-24 109.2 9.7 100 4-103 65-168 (168)
119 2cpx_A Hypothetical protein FL 99.8 8.8E-21 3E-25 108.1 4.8 82 23-104 22-103 (115)
120 1why_A Hypothetical protein ri 99.8 1.6E-19 5.6E-24 100.1 9.8 76 23-104 14-91 (97)
121 1x4d_A Matrin 3; structural ge 99.8 1.5E-20 5E-25 105.4 5.4 75 24-104 13-90 (102)
122 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-19 4.3E-24 102.5 9.2 77 22-104 21-97 (109)
123 1nu4_A U1A RNA binding domain; 99.8 2.3E-20 7.9E-25 103.4 5.9 79 23-104 5-87 (97)
124 1fj7_A Nucleolin RBD1, protein 99.8 3.4E-21 1.2E-25 107.6 2.3 80 23-104 14-93 (101)
125 1wf1_A RNA-binding protein RAL 99.8 2.1E-19 7E-24 101.8 9.7 73 24-104 25-98 (110)
126 2cq1_A PTB-like protein L; RRM 99.8 2.5E-19 8.7E-24 100.2 9.9 75 24-104 13-89 (101)
127 2ad9_A Polypyrimidine tract-bi 99.8 7.9E-20 2.7E-24 104.9 8.0 76 23-104 28-105 (119)
128 2f3j_A RNA and export factor b 99.8 7.8E-20 2.7E-24 111.5 8.3 80 24-104 86-165 (177)
129 1b7f_A Protein (SXL-lethal pro 99.8 1.5E-19 5.1E-24 108.4 9.4 80 25-104 2-81 (168)
130 1wex_A Hypothetical protein (r 99.8 1.3E-19 4.5E-24 101.9 8.6 75 24-104 13-89 (104)
131 2lcw_A RNA-binding protein FUS 99.7 1.1E-21 3.9E-26 112.1 0.0 82 23-104 4-93 (116)
132 2dgt_A RNA-binding protein 30; 99.8 2.3E-19 8E-24 98.6 9.3 74 23-104 7-80 (92)
133 2yh0_A Splicing factor U2AF 65 99.8 2.7E-19 9.3E-24 109.8 10.6 81 24-104 112-192 (198)
134 2la4_A Nuclear and cytoplasmic 99.8 1.8E-19 6.2E-24 100.6 8.8 75 24-104 25-99 (101)
135 2cpj_A Non-POU domain-containi 99.8 1.3E-19 4.4E-24 100.9 8.1 76 23-104 12-87 (99)
136 3pgw_S U1-70K; protein-RNA com 99.8 1.9E-19 6.6E-24 122.6 10.5 81 24-104 100-180 (437)
137 2dha_A FLJ20171 protein; RRM d 99.8 7.2E-20 2.5E-24 105.8 7.1 78 24-103 21-102 (123)
138 1fxl_A Paraneoplastic encephal 99.8 1.8E-19 6.2E-24 107.8 9.1 99 4-102 64-166 (167)
139 2dnp_A RNA-binding protein 14; 99.8 3.3E-19 1.1E-23 97.6 8.9 74 23-104 6-79 (90)
140 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-18 3.9E-23 97.0 11.0 74 23-104 12-87 (99)
141 2e5g_A U6 snRNA-specific termi 99.8 7.4E-19 2.5E-23 97.0 9.9 75 24-104 6-80 (94)
142 2xs2_A Deleted in azoospermia- 99.8 6.1E-20 2.1E-24 102.7 5.6 74 25-101 8-81 (102)
143 1fjc_A Nucleolin RBD2, protein 99.8 8.4E-20 2.9E-24 101.0 6.1 76 24-104 14-89 (96)
144 2hvz_A Splicing factor, argini 99.8 7.5E-20 2.6E-24 102.1 5.9 73 27-104 1-73 (101)
145 1l3k_A Heterogeneous nuclear r 99.8 6.1E-19 2.1E-23 108.1 10.4 81 22-103 9-89 (196)
146 1whx_A Hypothetical protein ri 99.8 9.5E-20 3.2E-24 103.5 6.2 73 25-103 9-81 (111)
147 2i2y_A Fusion protein consists 99.8 3E-19 1E-23 106.1 8.5 77 23-104 70-146 (150)
148 4f02_A Polyadenylate-binding p 99.8 3.5E-19 1.2E-23 111.1 9.2 78 25-104 102-179 (213)
149 2dgu_A Heterogeneous nuclear r 99.8 5.2E-19 1.8E-23 99.1 8.8 73 24-104 9-81 (103)
150 2kvi_A Nuclear polyadenylated 99.8 2E-19 6.8E-24 99.7 6.9 73 23-103 7-80 (96)
151 2e44_A Insulin-like growth fac 99.8 3E-19 1E-23 98.8 7.6 77 24-104 13-90 (96)
152 1x4f_A Matrin 3; structural ge 99.8 1.3E-19 4.5E-24 103.0 6.1 76 23-104 22-100 (112)
153 3egn_A RNA-binding protein 40; 99.8 6.5E-20 2.2E-24 108.2 4.7 81 23-104 42-128 (143)
154 2hgm_A HNRPF protein, heteroge 99.8 1.7E-19 6E-24 104.5 6.3 78 23-103 39-118 (126)
155 2hgn_A Heterogeneous nuclear r 99.8 5.6E-20 1.9E-24 108.2 4.1 78 24-104 44-121 (139)
156 3beg_B Splicing factor, argini 99.8 2.5E-19 8.6E-24 102.3 6.7 67 24-97 14-80 (115)
157 1wg1_A KIAA1579 protein, homol 99.8 4.7E-19 1.6E-23 96.7 7.5 73 25-104 4-76 (88)
158 1sjr_A Polypyrimidine tract-bi 99.8 1.3E-18 4.3E-23 104.6 9.2 77 24-104 44-122 (164)
159 3nmr_A Cugbp ELAV-like family 99.8 1.1E-18 3.8E-23 105.1 9.1 78 25-103 94-174 (175)
160 2cqh_A IGF-II mRNA-binding pro 99.8 4.4E-19 1.5E-23 97.6 6.8 74 24-104 6-81 (93)
161 3md3_A Nuclear and cytoplasmic 99.8 1.1E-18 3.7E-23 104.2 8.8 76 27-103 1-76 (166)
162 2qfj_A FBP-interacting repress 99.8 1.9E-18 6.3E-23 107.3 9.6 79 25-103 27-105 (216)
163 3zzy_A Polypyrimidine tract-bi 99.8 4.1E-18 1.4E-22 99.0 10.3 76 24-104 26-104 (130)
164 2dnl_A Cytoplasmic polyadenyla 99.8 8.6E-19 2.9E-23 99.9 7.4 69 24-93 6-80 (114)
165 2cq2_A Hypothetical protein LO 99.8 1.5E-18 5.3E-23 98.7 7.4 75 23-103 22-103 (114)
166 1l3k_A Heterogeneous nuclear r 99.8 7.7E-18 2.6E-22 103.2 10.7 79 25-104 103-181 (196)
167 2hzc_A Splicing factor U2AF 65 99.8 3E-18 1E-22 93.1 7.8 70 25-101 5-85 (87)
168 3smz_A Protein raver-1, ribonu 99.8 5.9E-18 2E-22 109.2 10.3 97 3-103 76-172 (284)
169 3tyt_A Heterogeneous nuclear r 99.8 3.5E-18 1.2E-22 106.3 8.9 75 25-104 3-78 (205)
170 1x5p_A Negative elongation fac 99.8 1.9E-17 6.5E-22 91.7 10.7 73 24-104 13-85 (97)
171 3nmr_A Cugbp ELAV-like family 99.8 7.6E-18 2.6E-22 101.4 9.5 70 25-94 2-73 (175)
172 2cjk_A Nuclear polyadenylated 99.8 1.3E-18 4.4E-23 104.3 6.1 79 25-104 86-164 (167)
173 2diu_A KIAA0430 protein; struc 99.8 7.8E-18 2.7E-22 92.2 8.5 68 27-104 10-82 (96)
174 2voo_A Lupus LA protein; RNA-b 99.8 1.2E-17 4.2E-22 103.0 10.4 77 26-104 109-185 (193)
175 2e5i_A Heterogeneous nuclear r 99.8 1.5E-17 5.1E-22 96.0 9.8 72 27-104 26-100 (124)
176 3smz_A Protein raver-1, ribonu 99.8 1.3E-17 4.4E-22 107.6 10.6 80 24-104 182-262 (284)
177 1fje_B Nucleolin RBD12, protei 99.7 7.3E-18 2.5E-22 101.8 8.4 96 4-104 73-172 (175)
178 2pe8_A Splicing factor 45; RRM 99.7 3.3E-17 1.1E-21 92.2 10.1 81 24-104 6-92 (105)
179 3d2w_A TAR DNA-binding protein 99.7 1.9E-17 6.6E-22 90.6 8.6 72 23-103 8-81 (89)
180 3pgw_A U1-A; protein-RNA compl 99.7 2.1E-17 7.1E-22 106.5 10.1 80 22-104 5-88 (282)
181 2cjk_A Nuclear polyadenylated 99.7 8.1E-18 2.8E-22 100.8 7.7 76 25-102 2-77 (167)
182 2ghp_A U4/U6 snRNA-associated 99.7 6.6E-18 2.3E-22 109.3 7.4 80 24-104 208-289 (292)
183 2adc_A Polypyrimidine tract-bi 99.7 2.9E-17 9.9E-22 103.4 8.8 77 23-104 31-108 (229)
184 3pgw_A U1-A; protein-RNA compl 99.7 1.4E-16 4.6E-21 102.7 11.0 76 24-104 205-281 (282)
185 2bz2_A Negative elongation fac 99.7 5.9E-17 2E-21 93.3 7.8 73 24-104 37-109 (121)
186 3sde_A Paraspeckle component 1 99.7 7.1E-17 2.4E-21 103.4 8.9 95 4-103 78-176 (261)
187 1wf0_A TDP-43, TAR DNA-binding 99.7 2.7E-17 9.3E-22 89.6 4.6 71 24-103 3-75 (88)
188 3u1l_A PRE-mRNA-splicing facto 99.7 1E-16 3.4E-21 101.6 7.3 75 24-104 132-227 (240)
189 3sde_A Paraspeckle component 1 99.7 2.7E-16 9.1E-21 100.7 9.0 75 24-104 20-94 (261)
190 1qm9_A Polypyrimidine tract-bi 99.7 6.1E-17 2.1E-21 99.6 5.7 74 26-104 3-77 (198)
191 2ghp_A U4/U6 snRNA-associated 99.7 2.7E-16 9.1E-21 101.8 8.8 94 4-103 100-194 (292)
192 1fje_B Nucleolin RBD12, protei 99.7 1.2E-17 4E-22 100.9 2.2 81 22-104 9-89 (175)
193 2adc_A Polypyrimidine tract-bi 99.7 3.3E-16 1.1E-20 98.6 8.2 75 25-104 150-226 (229)
194 3tyt_A Heterogeneous nuclear r 99.7 1.9E-16 6.5E-21 98.5 6.6 72 25-98 122-195 (205)
195 2dit_A HIV TAT specific factor 99.7 1.6E-15 5.4E-20 86.1 9.5 79 22-104 11-100 (112)
196 1jmt_A Splicing factor U2AF 35 99.7 6E-17 2.1E-21 91.0 3.6 72 31-103 20-103 (104)
197 1qm9_A Polypyrimidine tract-bi 99.6 1E-15 3.5E-20 94.1 8.1 75 25-104 119-195 (198)
198 2g4b_A Splicing factor U2AF 65 99.6 1.8E-15 6.1E-20 90.9 8.3 73 25-104 3-86 (172)
199 3v4m_A Splicing factor U2AF 65 99.6 1.5E-15 5.3E-20 85.3 6.9 79 25-103 4-94 (105)
200 2yh0_A Splicing factor U2AF 65 99.6 3E-15 1E-19 91.7 8.1 73 25-104 3-86 (198)
201 3ue2_A Poly(U)-binding-splicin 99.6 5.8E-15 2E-19 84.6 8.3 79 25-103 19-106 (118)
202 3tht_A Alkylated DNA repair pr 99.5 1.7E-14 5.8E-19 95.6 7.8 66 23-94 15-82 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.6E-13 5.5E-18 76.4 7.9 62 36-104 27-88 (100)
204 1owx_A Lupus LA protein, SS-B, 99.5 2.2E-13 7.7E-18 78.0 6.7 77 22-104 14-94 (121)
205 3s6e_A RNA-binding protein 39; 99.4 1.7E-13 5.8E-18 78.0 5.3 75 25-103 6-90 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1.5E-12 5.1E-17 70.7 6.5 72 24-104 5-84 (91)
207 3dxb_A Thioredoxin N-terminall 99.2 7.1E-11 2.4E-15 73.8 7.6 66 38-103 141-210 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 3.9E-11 1.3E-15 65.4 5.3 72 23-103 12-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.8 4.9E-08 1.7E-12 54.5 7.9 71 25-101 20-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.3 8.3E-06 2.9E-10 44.6 7.9 57 24-89 14-70 (100)
211 1uw4_A UPF3X; nonsense mediate 98.2 1.2E-05 4E-10 43.7 7.6 71 27-97 2-74 (91)
212 1wey_A Calcipressin 1; structu 98.1 1.6E-05 5.5E-10 44.0 5.9 72 26-103 5-81 (104)
213 3ctr_A Poly(A)-specific ribonu 97.9 2E-05 6.7E-10 43.2 4.7 55 26-89 6-60 (101)
214 2l08_A Regulator of nonsense t 97.7 5.1E-05 1.7E-09 41.5 4.4 72 26-97 9-82 (97)
215 2dhx_A Poly (ADP-ribose) polym 97.6 0.0011 3.9E-08 36.5 8.5 56 24-87 6-66 (104)
216 1wwh_A Nucleoporin 35, nucleop 97.5 0.00059 2E-08 38.7 6.6 63 25-95 23-85 (119)
217 3pq1_A Poly(A) RNA polymerase; 97.1 0.00038 1.3E-08 48.0 3.6 54 26-85 53-106 (464)
218 2kn4_A Immunoglobulin G-bindin 96.5 0.0028 9.5E-08 37.0 3.7 33 56-90 3-35 (158)
219 2i2y_A Fusion protein consists 96.3 0.0013 4.6E-08 38.2 1.6 40 64-104 9-49 (150)
220 3d45_A Poly(A)-specific ribonu 95.1 0.13 4.6E-06 35.8 7.7 55 26-89 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 94.6 0.055 1.9E-06 31.1 4.0 73 26-100 7-93 (132)
222 2g0c_A ATP-dependent RNA helic 80.4 4 0.00014 20.4 5.4 68 28-104 2-75 (76)
223 4eyt_A Telomerase associated p 45.9 34 0.0012 18.3 8.3 56 25-88 11-66 (129)
224 3mfb_A Uncharacterized protein 36.8 65 0.0022 18.9 5.4 37 38-74 3-42 (157)
225 3fut_A Dimethyladenosine trans 33.4 59 0.002 20.6 3.8 32 27-59 111-142 (271)
226 3lpe_A Putative transcription 31.8 47 0.0016 17.3 2.7 25 67-91 49-73 (92)
227 3h7h_B Transcription elongatio 31.3 36 0.0012 18.5 2.2 26 67-92 50-75 (106)
228 2exu_A Transcription initiatio 31.1 68 0.0023 19.6 3.6 28 67-94 148-175 (200)
229 4e8u_A Putative uncharacterize 30.0 91 0.0031 18.6 7.8 45 38-85 33-80 (172)
230 3uzu_A Ribosomal RNA small sub 26.4 34 0.0012 21.8 1.8 34 27-60 115-148 (279)
231 2lfv_A Protein DAMX; cell divi 32.2 14 0.00048 20.1 0.0 51 39-91 35-87 (106)
232 2hpu_A NOSL protein; alpha bet 25.1 1E+02 0.0034 18.3 3.6 25 70-94 112-136 (175)
233 3fry_A Probable copper-exporti 24.1 67 0.0023 15.1 5.3 58 27-92 7-64 (73)
234 3tqs_A Ribosomal RNA small sub 23.6 25 0.00086 22.0 0.8 32 29-60 99-130 (255)
235 2cs4_A Protein C12ORF2; GTP bi 22.9 57 0.0019 17.5 2.0 23 31-53 21-44 (95)
236 1xn9_A 30S ribosomal protein S 22.2 1E+02 0.0035 16.6 5.8 48 36-84 28-80 (101)
237 1qyr_A KSGA, high level kasuga 22.2 1E+02 0.0034 19.2 3.4 29 28-56 92-120 (252)
238 3ftd_A Dimethyladenosine trans 21.1 78 0.0027 19.6 2.7 28 28-55 97-124 (249)
239 3p8b_B Transcription antitermi 20.5 96 0.0033 17.6 2.8 25 67-91 42-66 (152)
240 4aj5_1 SKA3, spindle and kinet 20.1 44 0.0015 18.1 1.2 11 41-51 91-101 (101)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=8.5e-25 Score=122.24 Aligned_cols=80 Identities=29% Similarity=0.482 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.++|..++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999998764
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=7.3e-24 Score=120.48 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.++|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999999999989999999999999999999999999999999999999886
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 3
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=7.2e-23 Score=114.16 Aligned_cols=83 Identities=25% Similarity=0.334 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
.....++|||+|||..+++++|+++|++||.+.. +.+..++.+|.++|||||+|.+.++|+.|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred eeeeeeeccCC
Q 034058 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|..++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999998764
No 4
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.90 E-value=4.8e-23 Score=111.79 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|..|++.|||..+.|+.++|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 5
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.5e-22 Score=111.89 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..+.++|||+|||+.+++++|+++|++||.|..+.+..++.++.+++||||+|.+.++|.+|+..|||..+.|+.++|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=2e-22 Score=108.86 Aligned_cols=78 Identities=31% Similarity=0.489 Sum_probs=74.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|+..|+|..+.|+.++|..++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 589999999999999999999999999999999998899999999999999999999999999999999999998865
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=110.28 Aligned_cols=81 Identities=32% Similarity=0.507 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|+.|++.|+|..+.|+.++|..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=111.96 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..++.++.+++||||+|.+.++|+.|++.|||..+.|+.++|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 9
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=2.8e-22 Score=114.45 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+++++++|+++|..||.|..+.+..+..++.+++||||+|.+.++|++|++.|||..+.|+.++|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 101 ~a~ 103 (115)
T 2cpz_A 101 LKR 103 (115)
T ss_dssp CCC
T ss_pred EcC
Confidence 864
No 10
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.89 E-value=9.6e-23 Score=118.77 Aligned_cols=83 Identities=28% Similarity=0.396 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...+.++|||+|||+.+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|++|+..|+|..+.|+.++|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 122 ~a~ 124 (129)
T 2kxn_B 122 FSI 124 (129)
T ss_dssp CCS
T ss_pred Eec
Confidence 864
No 11
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.89 E-value=1.3e-22 Score=116.22 Aligned_cols=83 Identities=31% Similarity=0.440 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+++++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|+.|++.|||..+.|+.++|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 764
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=3.6e-23 Score=113.64 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+|||+|||+++++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.++|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999998764
No 13
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=113.42 Aligned_cols=83 Identities=25% Similarity=0.537 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|..|++.|+|..+.|+.++|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 102 ~a~ 104 (108)
T 2jrs_A 102 HVT 104 (108)
T ss_dssp CSC
T ss_pred Ecc
Confidence 875
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.1e-22 Score=112.96 Aligned_cols=83 Identities=28% Similarity=0.397 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 91 ~a~ 93 (103)
T 2cq0_A 91 WAK 93 (103)
T ss_dssp ESS
T ss_pred ECC
Confidence 764
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.5e-22 Score=110.69 Aligned_cols=82 Identities=24% Similarity=0.561 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|.+||.|..+.+..+. +|.+++||||+|.+.++|..|++.|+|..+.|+.++|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 92 ~a~ 94 (100)
T 2do4_A 92 ISN 94 (100)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.2e-22 Score=113.17 Aligned_cols=84 Identities=36% Similarity=0.504 Sum_probs=78.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+....++|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|+.|+..|+|..+.|+.++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34556789999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 90 ~~a~ 93 (105)
T 1x5u_A 90 NKAS 93 (105)
T ss_dssp EETT
T ss_pred EECC
Confidence 8764
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=2.4e-22 Score=111.47 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
+++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|..|++.|+|..+.|+.++|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999999998889999999999999999999999999999999999998864
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=114.96 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcC-CceeeeeeeeeccC
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD-GLVCRTSKDTDMLS 103 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~-g~~~~~~~~~v~~~ 103 (105)
+++|||+|||+++++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|.+|++.++ +..+.|+.++|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999998899999999999999999999998874 56799999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=4.2e-22 Score=112.34 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.+..+. +|.++|||||+|.+.++|++|+..|+|..+.|+.++|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999998
Q ss_pred CCC
Q 034058 103 STG 105 (105)
Q Consensus 103 ~~~ 105 (105)
+++
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 753
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=7.2e-22 Score=112.71 Aligned_cols=83 Identities=33% Similarity=0.512 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|++|++.|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 91 ~a~ 93 (115)
T 2dgo_A 91 WAT 93 (115)
T ss_dssp ESS
T ss_pred Ecc
Confidence 764
No 21
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=114.72 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCC--eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCc----eeeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE--IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----VCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~----~~~~~~ 97 (105)
..-.+|||+|||+.+++++|+++|++||. +..+++++++.+|.++|||||+|.+.++|++|++.|||. .++|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45678999999999999999999999995 678999999989999999999999999999999999996 589999
Q ss_pred eeeccCC
Q 034058 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
+.|.+++
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999876
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.6e-22 Score=111.78 Aligned_cols=82 Identities=29% Similarity=0.429 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|..|+..|||..+.|+.++|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 85 a~ 86 (99)
T 1whw_A 85 ST 86 (99)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=110.78 Aligned_cols=81 Identities=26% Similarity=0.518 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|+.|+..|||..+.|+.++|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 83 ~ 83 (95)
T 2dnz_A 83 T 83 (95)
T ss_dssp S
T ss_pred c
Confidence 4
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4e-22 Score=112.25 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|+.|+..|+|..+.|+.++|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 100 a~ 101 (106)
T 1p27_B 100 CF 101 (106)
T ss_dssp SE
T ss_pred ec
Confidence 53
No 25
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.88 E-value=5.1e-22 Score=109.79 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..+. ++.+++||||+|.+.++|++|++.|+|..+.|+.++|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4467899999999999999999999999999999999987 488999999999999999999999999999999999998
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=114.23 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=78.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+....++|||+|||+.+++++|+++|++||.|..+.+..+..++.+++||||+|.+.++|++|+..|||..+.|+.++|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 88 ~~a~ 91 (103)
T 2dnm_A 88 QVAR 91 (103)
T ss_dssp EECS
T ss_pred EECC
Confidence 8864
No 27
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.88 E-value=5.8e-23 Score=114.88 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee-e
Q 034058 24 NSRTKLFIGGLSY------DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT-S 96 (105)
Q Consensus 24 ~~~~~l~v~~l~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~-~ 96 (105)
...++|||+|||. .+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4467999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred eeeeccC
Q 034058 97 KDTDMLS 103 (105)
Q Consensus 97 ~~~v~~~ 103 (105)
.++|..+
T Consensus 84 ~l~V~~a 90 (100)
T 3ns6_A 84 RLFLYTM 90 (100)
T ss_dssp BCEEEES
T ss_pred EEEEEEC
Confidence 9999865
No 28
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=110.28 Aligned_cols=81 Identities=30% Similarity=0.459 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeee----e
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEII-EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK----D 98 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~----~ 98 (105)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++.++|||||+|.+.++|++|++.|||..+.|+. +
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999999889999999999999999999999999999999999 8
Q ss_pred eeccCC
Q 034058 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..++
T Consensus 87 ~v~~a~ 92 (99)
T 2div_A 87 KLNYAT 92 (99)
T ss_dssp CEEETT
T ss_pred EEeecC
Confidence 887654
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=4.7e-22 Score=113.70 Aligned_cols=77 Identities=34% Similarity=0.591 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||+++++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|++|++.|+|..+.|+.++|..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999885 447899999999999999999999999999999999765
No 30
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=118.99 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=75.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|||..+.|+.++|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999988999999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 31
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=5e-22 Score=110.68 Aligned_cols=82 Identities=27% Similarity=0.461 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++ |++..+.|+.++|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999998 99999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 85 ~a~ 87 (99)
T 2dgs_A 85 RAE 87 (99)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=8.2e-22 Score=111.76 Aligned_cols=83 Identities=27% Similarity=0.427 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcC------Cceeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD------GLVCRT 95 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~------g~~~~~ 95 (105)
+....++|||+|||+.+++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|..|+..|+ |..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999998889999999999999999999999999 999999
Q ss_pred eeeeeccCC
Q 034058 96 SKDTDMLST 104 (105)
Q Consensus 96 ~~~~v~~~~ 104 (105)
+.++|..+.
T Consensus 91 ~~l~v~~a~ 99 (111)
T 1x4h_A 91 RQLKVDLAV 99 (111)
T ss_dssp CEEEEECCC
T ss_pred EEEEEEECC
Confidence 999998764
No 33
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=1.1e-21 Score=106.87 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..+.|+.++|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999994 58888999999987
Q ss_pred cC
Q 034058 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.3e-22 Score=109.76 Aligned_cols=81 Identities=27% Similarity=0.424 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---CCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+.. ++.+++||||+|.+.++|++|+..|+|..+.|+.++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567999999999999999999999999999999988765 5588999999999999999999999999999999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.++.
T Consensus 83 ~~a~ 86 (98)
T 2cpf_A 83 RISE 86 (98)
T ss_dssp ECSS
T ss_pred EEcc
Confidence 8764
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.3e-22 Score=110.75 Aligned_cols=81 Identities=33% Similarity=0.525 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
.+.++|||+|||+.+++++|+++|++||.|..+ .++.++.++.+++||||+|.+.++|+.|+..|+|..+.|+.++|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999877999999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 83 a~ 84 (96)
T 1x5t_A 83 AF 84 (96)
T ss_dssp SC
T ss_pred ec
Confidence 64
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=1.6e-21 Score=109.63 Aligned_cols=81 Identities=30% Similarity=0.389 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee---eeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT---SKDT 99 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~---~~~~ 99 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+|++.|||..+.+ +.++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999987 89999999999999999999999999999998 9999
Q ss_pred eccCC
Q 034058 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.++.
T Consensus 91 V~~a~ 95 (105)
T 2dnh_A 91 VKFAD 95 (105)
T ss_dssp EEESC
T ss_pred EEECc
Confidence 98764
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=115.18 Aligned_cols=83 Identities=34% Similarity=0.557 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..|||..+.|+.++|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 118 ~a~ 120 (139)
T 1u6f_A 118 LAA 120 (139)
T ss_dssp ESS
T ss_pred ECC
Confidence 764
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.2e-22 Score=111.94 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|+.|++.|+|..+.|+.++|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999888899999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 89 a~ 90 (102)
T 2cqb_A 89 AK 90 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 39
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=6.6e-22 Score=112.08 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|..|+..|+|..+.|+.++|..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred C
Q 034058 103 S 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 103 a 103 (110)
T 1oo0_B 103 C 103 (110)
T ss_dssp S
T ss_pred c
Confidence 5
No 40
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=7.1e-22 Score=113.16 Aligned_cols=82 Identities=43% Similarity=0.648 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||.++++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|++|++.|+|..+.|+.++|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 82 ~a~ 84 (116)
T 2fy1_A 82 QAK 84 (116)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 41
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=4.7e-22 Score=110.57 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|++|++.|||..+.|+.++|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999998887788877899999999999999999999999999999999999998
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 42
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.8e-22 Score=108.84 Aligned_cols=80 Identities=28% Similarity=0.433 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|..|++.|||..+.|+.+++..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999998754
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=109.52 Aligned_cols=81 Identities=31% Similarity=0.459 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCce-eeeeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV-CRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~-~~~~~~~v 100 (105)
....++|||+|||+.+++++|+++|.+ ||.|..+.++.+. +|.++|||||+|.+.++|..|+..|+|.. +.|+.++|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..+.
T Consensus 85 ~~a~ 88 (104)
T 2dhg_A 85 SVAI 88 (104)
T ss_dssp CBCC
T ss_pred EEcc
Confidence 8764
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=1.1e-21 Score=107.13 Aligned_cols=78 Identities=17% Similarity=0.521 Sum_probs=74.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|+ .|+|..+.|+.++|..++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 578999999999999999999999999999999999889999999999999999999999 999999999999998764
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=110.46 Aligned_cols=83 Identities=19% Similarity=0.396 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEec-CCCCCeeeEEEEEeCCHHHHHHHHHHc-CCceeeeeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD-RVTGQSRGYGFVKFASEAAAGEAIKEM-DGLVCRTSKDT 99 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~g~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~~ 99 (105)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ ..++.++|||||+|.+.++|.+|+..| ||..+.|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999888 678999999999999999999999999 99999999999
Q ss_pred eccCC
Q 034058 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.+++
T Consensus 91 v~~a~ 95 (107)
T 2cph_A 91 LEWAD 95 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98764
No 46
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.87 E-value=3.1e-22 Score=115.58 Aligned_cols=79 Identities=23% Similarity=0.576 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|+.|+ .|+|..+.|+.++|..++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999889999999999999999999999 899999999999998764
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.8e-22 Score=111.65 Aligned_cols=82 Identities=40% Similarity=0.601 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..++.++.+++||||+|.+.++|..|++.|||..+.|+.++|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999888899999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 89 a~ 90 (102)
T 1x5s_A 89 AG 90 (102)
T ss_dssp EE
T ss_pred CC
Confidence 53
No 48
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=4.2e-22 Score=110.13 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|.+||.|..+.++.+..++.+++||||+|.+.++|++|++.|||..+.|+.++|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999888888888889999999999999999999999999999999999999864
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=114.18 Aligned_cols=81 Identities=28% Similarity=0.460 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|+|..+.|+.++|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999988899999999999999999999999999999999999986
Q ss_pred C
Q 034058 103 S 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 50
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=111.63 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
+....++|||+|||..+++++|+++|.+||.|. .+.+..++.++.++|||||+|.+.++|++|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 699999888999999999999999999999999999999
Q ss_pred eeeeeeeccCC
Q 034058 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|.+++
T Consensus 91 ~g~~l~V~~a~ 101 (113)
T 2cpe_A 91 QGSKLKVSLAR 101 (113)
T ss_dssp TTEECEEECSS
T ss_pred CCCEEEEEECC
Confidence 99999998864
No 51
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=111.24 Aligned_cols=82 Identities=41% Similarity=0.636 Sum_probs=76.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
......++|||+|||+.+++++|+++|.+||.|..+.+..++.++.+++||||+|.+.++|++|+..+++ .+.|+.++|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3445678999999999999999999999999999999999988899999999999999999999999999 899999999
Q ss_pred ccC
Q 034058 101 MLS 103 (105)
Q Consensus 101 ~~~ 103 (105)
.++
T Consensus 91 ~~a 93 (116)
T 2cqd_A 91 NLA 93 (116)
T ss_dssp EES
T ss_pred EEc
Confidence 876
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=108.86 Aligned_cols=80 Identities=30% Similarity=0.503 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.+..+ ++.+++||||+|.+.++|..|+..|||..+.|+.++|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999999999887 788999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 90 a~ 91 (103)
T 2d9p_A 90 AQ 91 (103)
T ss_dssp CS
T ss_pred ec
Confidence 64
No 53
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=6.8e-22 Score=111.30 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee---eeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC---RTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~---~~~~~ 98 (105)
.....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|+|..+ .++.+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999988899999999999999999999999999988 89999
Q ss_pred eeccCC
Q 034058 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..+.
T Consensus 89 ~v~~a~ 94 (106)
T 2dgp_A 89 QVKPAD 94 (106)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998764
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3e-21 Score=108.24 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+|| |..+.++.+..++.++|||||+|.+.++|++|+ .|+|..+.|+.++|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999888999999999999999999999 9999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 90 a~ 91 (103)
T 2dng_A 90 AE 91 (103)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-21 Score=109.54 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||..+++++|+++|.+||.|..+.+..+. ++.+++||||+|.+.++|+.|+..|+|..+.|+.++|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4457899999999999999999999999999999999987 689999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=107.26 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC-eeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~-~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||+++++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|.+|+..|||..+.|+.++|..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999988876665 8899999999999999999999999999999999865
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=1.5e-22 Score=118.73 Aligned_cols=89 Identities=29% Similarity=0.463 Sum_probs=80.6
Q ss_pred ccccccCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee
Q 034058 16 FTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 16 ~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
...+..+....++|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|+..|+|..+.|
T Consensus 37 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 37 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 33444455567899999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred eeeeeccCC
Q 034058 96 SKDTDMLST 104 (105)
Q Consensus 96 ~~~~v~~~~ 104 (105)
+.++|.+++
T Consensus 117 ~~l~V~~a~ 125 (135)
T 2lea_A 117 RELRVQMAR 125 (135)
T ss_dssp SCCEEEECC
T ss_pred EEEEEEECC
Confidence 999998865
No 58
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=4.2e-21 Score=114.82 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||..+++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|++|+..|+|..+.|+.++|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999886
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 4
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=4e-21 Score=105.60 Aligned_cols=80 Identities=25% Similarity=0.462 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..+ ++.+++||||+|.+.++|+.|+..|+|..+.|+.++|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999998874 788999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 83 a~ 84 (92)
T 2dgv_A 83 DR 84 (92)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=108.11 Aligned_cols=82 Identities=32% Similarity=0.549 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|++|+.. ++..+.|+.++|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999988 9999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 91 ~a~ 93 (105)
T 2dh8_A 91 PCT 93 (105)
T ss_dssp CSC
T ss_pred Ecc
Confidence 764
No 61
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=4.4e-21 Score=110.83 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|..|+..|+|..+.|+.++|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999988 8999999999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 112 ~ 112 (124)
T 2kt5_A 112 A 112 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 62
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=110.10 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||+|..+.++.+.. |.++|||||+|.+.++|..|+. ++|..+.|+.+.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999985 8999999999999999999997 999999999999875
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-22 Score=112.90 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||..+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|++|+ .|+|..+.|+.++|..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4579999999999999999999999999999999999888999999999999999999999 99999999999999864
No 64
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2e-21 Score=109.00 Aligned_cols=80 Identities=26% Similarity=0.549 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|++.|+|..+.|+.++|..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999998764
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=2e-21 Score=112.45 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++|++.|||..+.|+.+.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred C
Q 034058 103 S 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 99 a 99 (126)
T 3ex7_B 99 C 99 (126)
T ss_dssp S
T ss_pred e
Confidence 5
No 66
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.4e-21 Score=106.35 Aligned_cols=81 Identities=26% Similarity=0.382 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|++||.|..+.+..+..+ +++||||+|.+.++|.+|+..|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4456789999999999999999999999999999999988533 67999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 89 ~a~ 91 (103)
T 2cqi_A 89 WAT 91 (103)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.3e-21 Score=108.25 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC-CCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+.+++++|+++|..|| |..+.++.+..+ +.++|||||+|.+.++|++|+ .|+|..+.|+.++|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999998877 889999999999999999999 9999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 91 a~ 92 (104)
T 1wi8_A 91 AD 92 (104)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=105.77 Aligned_cols=81 Identities=27% Similarity=0.512 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|.+||.|..+.+..+.. .+++||||+|.+.++|.+|+..|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999988763 378999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 89 ~a~ 91 (103)
T 2cq3_A 89 NAT 91 (103)
T ss_dssp ECC
T ss_pred Ecc
Confidence 764
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=8.2e-21 Score=104.23 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|+.| .|..+.++.+ .+|.++|||||+|.+.++|..|+. |+|..+.|+.++|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999998 589999999999999999999999 999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 84 a~ 85 (91)
T 2dgw_A 84 EK 85 (91)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=6.6e-22 Score=115.37 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCc----eeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----VCRTS 96 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~----~~~~~ 96 (105)
....++|||+|||+++++++|+++|.+||.|.. +.++.++.+|.++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999966 99999998999999999999999 999999999999 99999
Q ss_pred eeeeccCC
Q 034058 97 KDTDMLST 104 (105)
Q Consensus 97 ~~~v~~~~ 104 (105)
.++|.+++
T Consensus 99 ~l~V~~a~ 106 (131)
T 2m2b_A 99 TINVEFAK 106 (131)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99998764
No 71
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4e-21 Score=106.58 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
...++|||+|||+.+++++|+ ++|++||.|..+.++.++.+ ++||||+|.+.++|++|++.|||..+.|+.++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 346799999999999999999 99999999999999988744 78999999999999999999999999999999
Q ss_pred eccCC
Q 034058 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|..++
T Consensus 84 V~~a~ 88 (96)
T 2dgx_A 84 VSLAT 88 (96)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98765
No 72
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.86 E-value=1e-21 Score=104.30 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ ++|..+.|+.++|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988889999999999999999999996 9999999999998754
No 73
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.9e-21 Score=109.46 Aligned_cols=82 Identities=27% Similarity=0.512 Sum_probs=74.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 21 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
......++|||+|||..+++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|++|+..|+|..+.|+.++|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999998875 348899999999999999999999999999999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 102 ~~a~ 105 (109)
T 2err_A 102 NNAT 105 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 8865
No 74
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=109.08 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee
Q 034058 22 DANSRTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
.....++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|..|+..|||..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999887 3578999999999999999999999999999999
Q ss_pred e-eeeeccCC
Q 034058 96 S-KDTDMLST 104 (105)
Q Consensus 96 ~-~~~v~~~~ 104 (105)
+ .++|..+.
T Consensus 89 ~~~l~V~~a~ 98 (105)
T 2nlw_A 89 QHTFRVNLFT 98 (105)
T ss_dssp TCEEEEECSC
T ss_pred CceEEEEEcc
Confidence 8 99998764
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=109.72 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecC-CCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-VTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....++|||+|||..+++++|+++|+.|| |..+.+..+. .+|.++|||||+|.+.++|.+|+ .|+|..+.|+.++|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999887 58999999999999999999999 99999999999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 93 ~~a~ 96 (100)
T 2j76_E 93 DVAD 96 (100)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8765
No 76
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=5.4e-21 Score=103.78 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.+..|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.|||..+.|+.|+|..++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 46999999999999999999999999999999998764
No 77
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-20 Score=103.78 Aligned_cols=80 Identities=28% Similarity=0.427 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|+. ++..+.|+.++|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999998889999999999999999999998 47789999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 90 a~ 91 (103)
T 2cqg_A 90 PN 91 (103)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 78
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=1.3e-20 Score=113.69 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+.+|.+||.|..+.+..+..+|.++|||||+|.+.++|..|+..|||..+.|+.+.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred C
Q 034058 103 S 103 (105)
Q Consensus 103 ~ 103 (105)
+
T Consensus 149 a 149 (165)
T 1rk8_A 149 C 149 (165)
T ss_dssp S
T ss_pred e
Confidence 5
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=105.35 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|.+||.|..+.+..+ +.+++||||+|.+.++|+.|++.||+..+.|+.++|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999988543 4578999999999999999999999999999999999
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 95 ~a~ 97 (109)
T 1x4a_A 95 FPR 97 (109)
T ss_dssp CCC
T ss_pred Ecc
Confidence 865
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=5.6e-21 Score=108.31 Aligned_cols=82 Identities=33% Similarity=0.534 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|..|+..+ |..+.|+.++|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4456789999999999999999999999999999999999888999999999999999999999876 599999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 100 ~a~ 102 (109)
T 2rs2_A 100 VAF 102 (109)
T ss_dssp ECC
T ss_pred Ecc
Confidence 753
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=106.39 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCC--ceeeeeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LVCRTSKDT 99 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~ 99 (105)
.+.+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|++.|++ ..+.|+.++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998865 48999999999999999998864 789999999
Q ss_pred eccCC
Q 034058 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|..++
T Consensus 86 V~~A~ 90 (105)
T 1sjq_A 86 IQFSN 90 (105)
T ss_dssp BCCCS
T ss_pred EEEcC
Confidence 98865
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=7.7e-21 Score=113.73 Aligned_cols=81 Identities=30% Similarity=0.470 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
....+|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|+.|+..|||..+.|+.++|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 148 ~ 148 (158)
T 2kn4_A 148 R 148 (158)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-20 Score=106.11 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee--------
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-------- 94 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-------- 94 (105)
....++|||+|||+.+++++|+++|.+||.|..+.++.+. ++.++|||||+|.+.++|..|+..|||..+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999998 8999999999999999999999999999994
Q ss_pred eeeeeeccC
Q 034058 95 TSKDTDMLS 103 (105)
Q Consensus 95 ~~~~~v~~~ 103 (105)
++.+.|.++
T Consensus 101 ~~~l~v~~a 109 (114)
T 1x5o_A 101 TEPLLCKFS 109 (114)
T ss_dssp SSCBEEEEC
T ss_pred CCceeEEcc
Confidence 566777654
No 84
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=104.20 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=66.9
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeee-ee
Q 034058 26 RTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTS-KD 98 (105)
Q Consensus 26 ~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~-~~ 98 (105)
+++|||+|||..+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|..|+..|||..+.|+ .+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999877 34788999999999999999999999999999999 88
Q ss_pred ee
Q 034058 99 TD 100 (105)
Q Consensus 99 ~v 100 (105)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 85
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=8.7e-21 Score=108.90 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
....++|||+|||+++++++|+++|..||. |..+.++.+.. |+++|||||+|.+.++|++|+. ++|..+.|+.++
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999998 89999999874 9999999999999999999998 999999999999
Q ss_pred eccC
Q 034058 100 DMLS 103 (105)
Q Consensus 100 v~~~ 103 (105)
|..+
T Consensus 92 V~~a 95 (118)
T 2db1_A 92 VFKS 95 (118)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9765
No 86
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.84 E-value=4.9e-21 Score=112.39 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+....++|||+|||+++++++|+++|++||. |..+.++.++. |+++|||||+|.+.++|++|++ ++|..+.|+.+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999985 9999999999999999999998 99999999999
Q ss_pred eeccCC
Q 034058 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..++
T Consensus 118 ~V~~a~ 123 (136)
T 2hgl_A 118 EVFKSH 123 (136)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998764
No 87
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.2e-21 Score=108.11 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEEecCCCC---CeeeEEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRVTG---QSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~g---~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
...++|||+|||+.+++++|+ ++|.+||.|..+.+..+..++ .++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356799999999999999999 999999999999998887544 45699999999999999999999999999999
Q ss_pred eeeccCC
Q 034058 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
++|.+++
T Consensus 93 l~V~~a~ 99 (111)
T 2cpi_A 93 LKASLGT 99 (111)
T ss_dssp EEEESCC
T ss_pred EEEEecc
Confidence 9998864
No 88
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-21 Score=103.78 Aligned_cols=76 Identities=34% Similarity=0.591 Sum_probs=71.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
++|||+|||+++++++|+++|++||.+..+.+..++.+|.++|||||+|.+.++|+.|+..++ ..+.|+.++|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999998765
No 89
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=5.8e-21 Score=120.65 Aligned_cols=80 Identities=26% Similarity=0.412 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
..++|||+|||+.+++++|+++|.+|| .|..+.++.++.+++++|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999988999999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 90
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-21 Score=109.22 Aligned_cols=79 Identities=32% Similarity=0.494 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|+.|+.. ++..+.|+.++|..+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999988899999999999999999999987 9999999999998764
No 91
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=2.5e-20 Score=116.32 Aligned_cols=80 Identities=30% Similarity=0.448 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.+.++|||+|||+++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|..|+..+++..+.|+.+++..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999988754
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=8.8e-22 Score=107.89 Aligned_cols=77 Identities=29% Similarity=0.534 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+ |..|+..|||..+.|+.++|..+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 47999999999999999999999999999999999888999999999999999 999999999999999999998764
No 93
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=106.39 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
....++|||+|||+.+++++|+++|.+||.|.. +.++.+ .+|+++|||||+|.+.++|++|+.. ++..+.|+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999987 888888 5899999999999999999999987 9999999999987
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 90 ~~~ 92 (104)
T 1wg5_A 90 KSS 92 (104)
T ss_dssp EEC
T ss_pred ECC
Confidence 643
No 94
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=3.6e-20 Score=111.53 Aligned_cols=102 Identities=24% Similarity=0.385 Sum_probs=86.0
Q ss_pred cCCCceecccccccccccc--CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHH
Q 034058 3 WLNGSVRFSHSVRFTRLLS--DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAA 80 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~ 80 (105)
.+++..+..+.+....+.. ......+|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 3556666555544332222 23446899999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHcCCceeeeeeeeeccCC
Q 034058 81 AGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 81 a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
|.+|+..|||..+.|+.+.|..+.
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999998763
No 95
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=104.78 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCce--eeeeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV--CRTSKDT 99 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~~~~~~ 99 (105)
...++++|||+|||+.+++++|+++|++||.|..+.++.. +|+|||+|++.++|.+|+..|+|.. +.|+.+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3456789999999999999999999999999999988743 4799999999999999999999875 6799999
Q ss_pred eccCC
Q 034058 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.+|+
T Consensus 91 V~~S~ 95 (100)
T 3r27_A 91 VNYST 95 (100)
T ss_dssp EEECS
T ss_pred EEecc
Confidence 99875
No 96
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3e-20 Score=111.07 Aligned_cols=102 Identities=28% Similarity=0.417 Sum_probs=85.5
Q ss_pred cCCCceecccccccccc----ccCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCH
Q 034058 3 WLNGSVRFSHSVRFTRL----LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASE 78 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~ 78 (105)
.+++..+..+.+..... ........+|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.
T Consensus 60 ~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 60 TLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp HHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred HcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 34555555554332211 12334577999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 79 AAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 79 ~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
++|.+|+..|||..+.|+.++|.+++
T Consensus 140 ~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 140 DDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999999875
No 97
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-21 Score=111.67 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+|+. |||..+.|+.+.|..
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999875555565689999999999999999999998 999999999999986
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 98
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=7.5e-21 Score=108.11 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....+|||+|||+++++++|+++|++|| .|..+.+... .++|||||+|.+.++|+.|++.|||..+.|+.++|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 8998887532 367999999999999999999999999999999999
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 101 ~a~ 103 (111)
T 2jvr_A 101 RDD 103 (111)
T ss_dssp ESC
T ss_pred ECC
Confidence 875
No 99
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=106.14 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
+...++|||+|||+.+++++|+++|.+||.+ .+.++.++ +++++|||||+|.+.++|++|+ .+|+..+.++.++|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 3456899999999999999999999999955 99999998 8999999999999999999999 5799999999999986
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 89 ~~ 90 (102)
T 1wez_A 89 NS 90 (102)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 100
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=106.81 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEE-ecCCCCCeeeEEEEEeCCHHHHHHHHHHcC--Cceeeeeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVI-CDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLVCRTSKDT 99 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~~~~~~ 99 (105)
...++|||+|||+.+++++|+++|..||. |..+.++ .+..+|.++|||||+|.+.++|..|+..|+ +..+.|+.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999988 777788899999999999999999999996 5899999999
Q ss_pred eccCC
Q 034058 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|..+.
T Consensus 86 V~~a~ 90 (109)
T 2dis_A 86 VDWAE 90 (109)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 98764
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=108.84 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6899999998887642 67889999999999999999999999999999999
Q ss_pred eeccCC
Q 034058 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|.+++
T Consensus 103 ~V~~a~ 108 (127)
T 2a3j_A 103 VITFSE 108 (127)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998865
No 102
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=106.89 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
....+|||+|||+.+++++|+++|+.| .|..+.++.++ +|+++|||||+|.+.++|++|+ .+|+..+.|+.+.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 89999999987 5999999999999999999999 79999999999999765
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 103
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.3e-20 Score=103.45 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=68.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee-----eee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT-----SKD 98 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~-----~~~ 98 (105)
...++|||+|||+.+++++|+++|.+||.|..+.+..+ +||||+|.+.++|++|++.|||..+.| +.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999998765 799999999999999999999999999 999
Q ss_pred eeccCC
Q 034058 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..+.
T Consensus 86 ~V~~a~ 91 (108)
T 1x4c_A 86 RVKVDG 91 (108)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 998754
No 104
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=100.02 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHc-CCceeeeeeeeec
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~~v~ 101 (105)
....++|||+|||+.+++++|+++|++||.|..+.+..+ ++||||+|.+.++|..|+..| +|..+.|+.++|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999998764 489999999999999999999 9999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
No 105
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=107.64 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
....++|||+|||+.+++++|+++|..||.+ ..+.++.+. +|.++|||||+|.+.++|++|+.. ++..+.|+.+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3457899999999999999999999999999 889999998 899999999999999999999977 9999999999997
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 90 ~a~ 92 (114)
T 2cpy_A 90 VVT 92 (114)
T ss_dssp EEC
T ss_pred ECC
Confidence 653
No 106
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=102.80 Aligned_cols=79 Identities=28% Similarity=0.359 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|.+||.| .++.+ .++.+++||||+|.+.++|++|+..|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999987 45555 478899999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 87 ~a~ 89 (101)
T 2fc9_A 87 LQG 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 764
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=6e-20 Score=103.91 Aligned_cols=75 Identities=31% Similarity=0.528 Sum_probs=69.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|+.|+..|+|..+.|+.++|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999886 4799999999999999999999999999999999
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 99 ~a~ 101 (108)
T 2jvo_A 99 YSK 101 (108)
T ss_dssp SCS
T ss_pred Eec
Confidence 865
No 108
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=9.3e-20 Score=101.29 Aligned_cols=75 Identities=21% Similarity=0.404 Sum_probs=68.7
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 22 DANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|+|..+.|+.++|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999883 589999999999999999999999999999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 90 ~~a~ 93 (97)
T 2xnq_A 90 EVSS 93 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 9875
No 109
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=99.70 Aligned_cols=74 Identities=28% Similarity=0.495 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|+.|+..|+|..+.|+.++|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999886 37999999999999999999999999999999988
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 77 a~ 78 (90)
T 2dnq_A 77 SK 78 (90)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 110
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=101.53 Aligned_cols=80 Identities=35% Similarity=0.501 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|+.|+ .+.++.+..++.+++||||+|.+.++|..|+..|+|..+.|+.++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999874 56777787789999999999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 88 ~a~ 90 (102)
T 2fc8_A 88 WAK 90 (102)
T ss_dssp ECC
T ss_pred Eec
Confidence 864
No 111
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=1.4e-19 Score=108.22 Aligned_cols=79 Identities=32% Similarity=0.530 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+.+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|..|++.|+|..+.|+.++|..+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5789999999999999999999999999999999998899999999999999999999999999999999999987653
No 112
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=5.5e-21 Score=101.40 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=69.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+|||+|||+.+++++|+++|++||.+..+.++.++.++.++|||||+|.+.++|++|++ +++..+.|+.++|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999988889999999999999999999996 4899999999988754
No 113
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=8.1e-21 Score=107.27 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+....++|||+|||+++++++|+++|..||. |..+.++.+.. |.++|||||+|.+.++|++|+. ++|..+.|+.+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999998 89999998885 9999999999999999999998 99999999999
Q ss_pred eeccCC
Q 034058 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..+.
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 987653
No 114
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=9.2e-20 Score=113.24 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|||..+.|+.++|..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999875
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 203 ~ 203 (216)
T 2qfj_A 203 V 203 (216)
T ss_dssp S
T ss_pred c
Confidence 4
No 115
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=9.6e-20 Score=103.84 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.++|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45679999999999999999999999999999998865 345899999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 83 ~ 83 (115)
T 3lqv_A 83 N 83 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 116
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.9e-20 Score=106.68 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=70.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCC----HHH----HHHHHH--HcCCce
Q 034058 27 TKLFIGGL----SYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS----EAA----AGEAIK--EMDGLV 92 (105)
Q Consensus 27 ~~l~v~~l----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~----~~~----a~~a~~--~l~g~~ 92 (105)
..|||+|| |+.+++.+|+++|+.||+|..+.++.|+.||.++|||||+|.+ ..+ |..|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 333 788888 789999
Q ss_pred eeeeeeeeccCC
Q 034058 93 CRTSKDTDMLST 104 (105)
Q Consensus 93 ~~~~~~~v~~~~ 104 (105)
++|+.++|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=101.60 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=69.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||+.+++++|+++|.+||.|. +.++.+ .++|||||+|.+.++|+.|+..|||..+.|+.++|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999986 555543 467899999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 90 ~a~ 92 (97)
T 2e5j_A 90 LAR 92 (97)
T ss_dssp ECC
T ss_pred EcC
Confidence 764
No 118
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=9.7e-20 Score=109.20 Aligned_cols=100 Identities=24% Similarity=0.442 Sum_probs=84.1
Q ss_pred CCCceecccccccc--ccccCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHH
Q 034058 4 LNGSVRFSHSVRFT--RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a 81 (105)
+++..+..+.+... .+........+|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|
T Consensus 65 l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp HTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 45565555554432 2233345678999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHcCCceeee--eeeeeccC
Q 034058 82 GEAIKEMDGLVCRT--SKDTDMLS 103 (105)
Q Consensus 82 ~~a~~~l~g~~~~~--~~~~v~~~ 103 (105)
..|+..|+|..+.| +.++|.++
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999977 88888764
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-21 Score=108.12 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|..|+..|+|..+.|+.++|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999884332222212678899999999999999999999999999999999988
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 102 a~ 103 (115)
T 2cpx_A 102 GK 103 (115)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 120
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=100.10 Aligned_cols=76 Identities=24% Similarity=0.404 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee--eeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR--TSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~--~~~~~v 100 (105)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.|||..+. |+.++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999988653 579999999999999999999999999 999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 88 ~~a~ 91 (97)
T 1why_A 88 DFAK 91 (97)
T ss_dssp EECC
T ss_pred EECC
Confidence 8764
No 121
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=105.41 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCc--eeeeeeeee
Q 034058 24 NSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL--VCRTSKDTD 100 (105)
Q Consensus 24 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~--~~~~~~~~v 100 (105)
.+.++|||+|||+ .+++++|+++|++||.|..+.++.++ +||||+|++.++|.+|++.|++. .+.|+.+.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4578999999999 99999999999999999999987653 78999999999999999998864 589999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
..++
T Consensus 87 ~~a~ 90 (102)
T 1x4d_A 87 HLSQ 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=102.54 Aligned_cols=77 Identities=21% Similarity=0.506 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
.....++|||+|||..+++++|+++|.+||.|..+.+..+ ++||||+|.+.++|..|+..|+|..+.|+.++|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999998865 4899999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 95 ~a~ 97 (109)
T 1x4g_A 95 WGK 97 (109)
T ss_dssp CCC
T ss_pred ecC
Confidence 865
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=2.3e-20 Score=103.43 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|..|+..|+|..+.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998763 56678999999999999999999999999999999
Q ss_pred eeccCC
Q 034058 99 TDMLST 104 (105)
Q Consensus 99 ~v~~~~ 104 (105)
+|..++
T Consensus 82 ~v~~a~ 87 (97)
T 1nu4_A 82 RIQYAK 87 (97)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 998764
No 124
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-21 Score=107.64 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+++++++|+++|.+||.+.. .++.+..++.++|||||+|.+.++|++|++ |+|..+.|+.++|..
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999998866 555555578889999999999999999998 999999999999988
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 92 a~ 93 (101)
T 1fj7_A 92 PK 93 (101)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=2.1e-19 Score=101.82 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 24 NSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+. +++++|+++|.+||.|..+.+ +++||||+|.+.++|+.|+..|+|..+.|+.++|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34579999999999 999999999999999999988 358999999999999999999999999999999988
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 126
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=100.25 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHc--CCceeeeeeeeec
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLVCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l--~g~~~~~~~~~v~ 101 (105)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|++.| ++..+.|+.+.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45789999999999999999999999999999988754 589999999999999999977 4678999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 87 ~a~ 89 (101)
T 2cq1_A 87 YSN 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 765
No 127
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=104.90 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCC--ceeeeeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~v 100 (105)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|++.++|.+|++.|++ ..+.|+.++|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999999999998865 48999999999999999998884 6899999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 102 ~~a~ 105 (119)
T 2ad9_A 102 QFSN 105 (119)
T ss_dssp EECS
T ss_pred EEcc
Confidence 8764
No 128
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=7.8e-20 Score=111.51 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|..|+..|+|..+.|+.++|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346799999999999999999999999999999999988 8999999999999999999999999999999999999875
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 165 ~ 165 (177)
T 2f3j_A 165 A 165 (177)
T ss_dssp S
T ss_pred c
Confidence 3
No 129
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=1.5e-19 Score=108.37 Aligned_cols=80 Identities=31% Similarity=0.443 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
+.++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|..|++.|+|..+.|+.+.|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998889999999999999999999999999999999999988653
No 130
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=101.90 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCc--eeeeeeeeec
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL--VCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~--~~~~~~~~v~ 101 (105)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ ++||||+|.+.++|..|++.|++. .+.|+.+.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999988753 489999999999999999988764 5899999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 87 ~a~ 89 (104)
T 1wex_A 87 YST 89 (104)
T ss_dssp ECS
T ss_pred Ecc
Confidence 764
No 131
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-21 Score=112.14 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
..+.++|||+|||..+++++|+++|++||.|.. +.+..++.++.++|||||+|.+.++|.+|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999988 888888778999999999999999999999999999999
Q ss_pred eeeeeeccCC
Q 034058 95 TSKDTDMLST 104 (105)
Q Consensus 95 ~~~~~v~~~~ 104 (105)
|+.++|..++
T Consensus 84 g~~l~V~~a~ 93 (116)
T 2lcw_A 84 GNPIKVSFAT 93 (116)
Confidence 9999998764
No 132
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=98.59 Aligned_cols=74 Identities=28% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+.. +||||+|.+.++|.+|+..|||..+.|+.++|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999998863 4999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 79 a~ 80 (92)
T 2dgt_A 79 ST 80 (92)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 133
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=2.7e-19 Score=109.83 Aligned_cols=81 Identities=27% Similarity=0.460 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|..|+..|+|..+.|+.++|..+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 192 ~ 192 (198)
T 2yh0_A 192 S 192 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-19 Score=100.55 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||..+++++|+++|++||.|..+.+.. ++|||||+|.+.++|..|+..|+|..+.|+.++|..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4568999999999999999999999999999998873 4589999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 135
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=100.89 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|.+||.|..+.+..+ ++||||+|.+.++|.+|++.|+|..+.|+.++|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999988754 48999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 86 a~ 87 (99)
T 2cpj_A 86 AC 87 (99)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=1.9e-19 Score=122.64 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|..+|.+||.|..+.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 180 ~ 180 (437)
T 3pgw_S 180 R 180 (437)
T ss_pred C
Confidence 5
No 137
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.2e-20 Score=105.76 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEI----IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
....+|||+|||+++++++|+++|++||.| ..+.++.+. +|+++|||||+|.+.++|++|+.. ++..+.++.+.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999875 688888885 899999999999999999999976 99999999988
Q ss_pred eccC
Q 034058 100 DMLS 103 (105)
Q Consensus 100 v~~~ 103 (105)
|..+
T Consensus 99 V~~a 102 (123)
T 2dha_A 99 LFRS 102 (123)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 8754
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.81 E-value=1.8e-19 Score=107.75 Aligned_cols=99 Identities=31% Similarity=0.490 Sum_probs=81.6
Q ss_pred CCCceecccccccc--ccccCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHH
Q 034058 4 LNGSVRFSHSVRFT--RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (105)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a 81 (105)
+++..+..+.+... .+........+|||+|||+.+++++|+++|++||.+..+.+..+..+|.++|||||+|.+.++|
T Consensus 64 l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 64 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp HTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 45655555554432 2222334668999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHcCCceeeeee--eeecc
Q 034058 82 GEAIKEMDGLVCRTSK--DTDML 102 (105)
Q Consensus 82 ~~a~~~l~g~~~~~~~--~~v~~ 102 (105)
.+|++.|||..+.|+. ++|.+
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEE
T ss_pred HHHHHHhcCCccCCCccceEEEe
Confidence 9999999999999976 55543
No 139
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=97.62 Aligned_cols=74 Identities=30% Similarity=0.479 Sum_probs=68.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.+.. +||||+|.+.++|+.|+..|+|..+.|+.++|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999998863 3899999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 78 a~ 79 (90)
T 2dnp_A 78 ST 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=96.99 Aligned_cols=74 Identities=31% Similarity=0.459 Sum_probs=67.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
....++|||+|||+.+++++|+++|++| |.|..+.+. ++||||+|.+.++|..|+..|||..+.|+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3457899999999999999999999999 889888763 469999999999999999999999999999999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 84 ~~a~ 87 (99)
T 2cpd_A 84 TLAK 87 (99)
T ss_dssp ECCC
T ss_pred EECC
Confidence 8865
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.4e-19 Score=96.96 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+++++++|+++|.+||.|..+ +.+..++. ||||+|.+.++|.+|+. |+|..+.|+.++|..+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 55555554 99999999999999998 9999999999999865
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=6.1e-20 Score=102.66 Aligned_cols=74 Identities=31% Similarity=0.552 Sum_probs=66.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
..++|||+|||+.+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|+.|+. +|..+.|+.+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 46799999999999999999999999999999999998 99999999999999999999998 6666666666544
No 143
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=8.4e-20 Score=101.01 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|..||.|..+ ..++.++|||||+|.+.++|..|+..|+|..+.|+.++|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 456899999999999999999999999988666 236889999999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 89 ~ 89 (96)
T 1fjc_A 89 G 89 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 144
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=7.5e-20 Score=102.13 Aligned_cols=73 Identities=29% Similarity=0.451 Sum_probs=68.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
++|||+|||+++++++|+++|++||.|..+.+..+ +++||||+|.+.++|+.|+..|+|..+.|+.++|..++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 47999999999999999999999999999998876 56899999999999999999999999999999998764
No 145
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=6.1e-19 Score=108.10 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+.. ++..+.|+.+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999988899999999999999999999966 8999999999887
Q ss_pred cC
Q 034058 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 88 ~~ 89 (196)
T 1l3k_A 88 RA 89 (196)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 146
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.5e-20 Score=103.54 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=67.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+.++|||+|||+.+++++|+++|++||.|..+.++. .++||||+|.+.++|+.|+..|||..+.|+.+.|.++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467999999999999999999999999999998764 3479999999999999999999999999999999865
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=3e-19 Score=106.12 Aligned_cols=77 Identities=30% Similarity=0.469 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
....++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|..|+..|||..+.|+.++|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999998765 468999999999999999999999999999999988
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 145 a~ 146 (150)
T 2i2y_A 145 SN 146 (150)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=3.5e-19 Score=111.12 Aligned_cols=78 Identities=33% Similarity=0.576 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
...+|||+|||+.+++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|.+|++.|||..+.|+.++|..+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999885 4478999999999999999999999999999999998754
No 149
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=5.2e-19 Score=99.06 Aligned_cols=73 Identities=26% Similarity=0.448 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+.+++++|+++|.+||.|..+.+. ++||||+|.+.++|++|+..|+|..+.|+.++|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999875 358999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 81 ~ 81 (103)
T 2dgu_A 81 K 81 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2e-19 Score=99.66 Aligned_cols=73 Identities=22% Similarity=0.382 Sum_probs=66.7
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 23 ANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
..+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|+|..+.|+.++|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999884 4799999999999999999999999999999998
Q ss_pred cC
Q 034058 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
++
T Consensus 79 ~a 80 (96)
T 2kvi_A 79 VS 80 (96)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=98.76 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=68.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+.+++++|+++|.+||.|..+ .++.++.++ .|||+|.+.++|..|+..|||..+.|+.++|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999 477776443 399999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 89 a~ 90 (96)
T 2e44_A 89 IP 90 (96)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=102.98 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCC--ceeeeeeee
Q 034058 23 ANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LVCRTSKDT 99 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~ 99 (105)
..+.++|||+|||++ +++++|+++|++||.|..+.+... +|||||+|.+.++|..|++.|++ ..+.|+.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 999999999999999999998643 58999999999999999998864 568999999
Q ss_pred eccCC
Q 034058 100 DMLST 104 (105)
Q Consensus 100 v~~~~ 104 (105)
|.++.
T Consensus 96 V~~a~ 100 (112)
T 1x4f_A 96 VDLSE 100 (112)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 98764
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=108.21 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEE------EEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV------KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTS 96 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~------~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 96 (105)
..+.++|||+|||+.+++++|+++|++||.|..+ .+... .+|.++|||||+|.+.++|..|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999999988653 11111 2678899999999999999999999999999999
Q ss_pred eeeeccCC
Q 034058 97 KDTDMLST 104 (105)
Q Consensus 97 ~~~v~~~~ 104 (105)
.+.|.+++
T Consensus 121 ~l~V~~a~ 128 (143)
T 3egn_A 121 PMVVQFAR 128 (143)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 99998864
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.7e-19 Score=104.48 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.....+|||+|||+++++++|+++|++| .+. .+.++.++. |+++|||||+|.+.++|++|+.. ++..+.|+.+.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3456899999999999999999999999 566 889998885 99999999999999999999974 779999999998
Q ss_pred ccC
Q 034058 101 MLS 103 (105)
Q Consensus 101 ~~~ 103 (105)
..+
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 155
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=5.6e-20 Score=108.24 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+++++++|+++|++|| +..+.++.++ +|+++|||||+|.+.++|++|+ .+|+..+.++.++|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999 6699999887 4999999999999999999999 89999999999998765
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 121 ~ 121 (139)
T 2hgn_A 121 S 121 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=2.5e-19 Score=102.34 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=61.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
...++|||+|||+.+++++|+++|.+||.|..+.+..+ +||||+|.+.++|+.|++.|||..+.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35689999999999999999999999999999988654 79999999999999999999999999988
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=4.7e-19 Score=96.69 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|++| .|..+.+. .++|||||+|.+.++|+.|++.|||..+.|+.++|..++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99888874 367899999999999999999999999999999998764
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=1.3e-18 Score=104.58 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee--eeeeec
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT--SKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~--~~~~v~ 101 (105)
....+|||+||++.+++++|+++|++||.|.++.+.... .++||||+|.+.++|+.|++.|||..+.+ +.++|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 445679999999999999999999999999999986543 46899999999999999999999999965 899998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 120 ~Ak 122 (164)
T 1sjr_A 120 FSK 122 (164)
T ss_dssp ECS
T ss_pred Eec
Confidence 765
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=1.1e-18 Score=105.08 Aligned_cols=78 Identities=32% Similarity=0.439 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee---eeeeeec
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR---TSKDTDM 101 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---~~~~~v~ 101 (105)
..++|||+|||+.+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|.+|+..|||..+. ++.++|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56799999999999999999999999999999999886 6889999999999999999999999998776 4888887
Q ss_pred cC
Q 034058 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
++
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 160
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=97.61 Aligned_cols=74 Identities=24% Similarity=0.354 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCC-ceeeeeeeeec
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-LVCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g-~~~~~~~~~v~ 101 (105)
...++|||+|||+.+++++|+++|++||. +..+.+. .++||||+|.+.++|+.|++.||| ..+.|+.++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45679999999999999999999999998 6555552 358999999999999999999999 99999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 79 ~a~ 81 (93)
T 2cqh_A 79 YSV 81 (93)
T ss_dssp ECC
T ss_pred Ecc
Confidence 764
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-18 Score=104.23 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=70.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
++|||+|||+++++++|+++|++||.|..+.+..++ +++++|||||+|.+.++|..|++.|+|..+.|+.+.+..+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 479999999999999999999999999999999887 6789999999999999999999999999999999998765
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.9e-18 Score=107.34 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
..++|||+|||+++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|++.|+|..+.|+.+.|..+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4679999999999999999999999999999999998888999999999999999999999999999999999998654
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=4.1e-18 Score=98.99 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeE-EEEEeCCHHHHHHHHHHcCCceeee--eeeee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLVCRT--SKDTD 100 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~~--~~~~v 100 (105)
...-.|||+||+..+++++|+++|++||.|.++.+.... +++ |||+|.+.++|..|++.|||..+.+ +.+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345578899999999999999999999999999887542 467 9999999999999999999999988 88999
Q ss_pred ccCC
Q 034058 101 MLST 104 (105)
Q Consensus 101 ~~~~ 104 (105)
.+++
T Consensus 101 ~~ak 104 (130)
T 3zzy_A 101 DFSK 104 (130)
T ss_dssp EECS
T ss_pred EecC
Confidence 8765
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=99.91 Aligned_cols=69 Identities=26% Similarity=0.496 Sum_probs=61.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CCeeeEEEEEeCCHHHHHHHHHHc---CCcee
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEM---DGLVC 93 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~~g~~fv~f~~~~~a~~a~~~l---~g~~~ 93 (105)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++|++.| +|..+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 4568999999999999999999999999999 777777656 789999999999999999999988 66633
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=98.73 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee-----ee
Q 034058 23 ANSRTKLFI--GGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC-----RT 95 (105)
Q Consensus 23 ~~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~-----~~ 95 (105)
..+..+||| +||++.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|||..+ .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345778999 789999999999999999999999877532 58999999999999999999999988 67
Q ss_pred eeeeeccC
Q 034058 96 SKDTDMLS 103 (105)
Q Consensus 96 ~~~~v~~~ 103 (105)
+.+.|.++
T Consensus 96 ~~l~v~~a 103 (114)
T 2cq2_A 96 ITLYLNFV 103 (114)
T ss_dssp EECEEEEE
T ss_pred cEEEEEec
Confidence 77777654
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=7.7e-18 Score=103.17 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|+.. +|..+.|+.+.|..+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 457999999999999999999999999999999999988899999999999999999999976 7999999999998653
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=3e-18 Score=93.05 Aligned_cols=70 Identities=21% Similarity=0.512 Sum_probs=64.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
..++|||+|||+.+++++|+++|++| | .+..+.+..+ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46799999999999999999999999 8 8999888654 589999999999999999 9999999
Q ss_pred eeeeeeec
Q 034058 94 RTSKDTDM 101 (105)
Q Consensus 94 ~~~~~~v~ 101 (105)
.|+.++|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999886
No 168
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=5.9e-18 Score=109.18 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=84.2
Q ss_pred cCCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHH
Q 034058 3 WLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~ 82 (105)
.+++..+..+.+.... ....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.
T Consensus 76 ~l~~~~~~g~~i~v~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 76 AFHQSRLRERELSVQL----QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp HHTTCEETTEECEEEE----CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred HcCCCeeCCeEEEEEe----cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 3566666655554432 235679999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHcCCceeeeeeeeeccC
Q 034058 83 EAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 83 ~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.|+..|+|..+.|+.+.|..+
T Consensus 152 ~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 152 RAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp HHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHhCCCEeCCcEEEEEEC
Confidence 999999999999999998765
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=3.5e-18 Score=106.30 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=69.0
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 25 SRTKLFIGGLS-YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 25 ~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
+.++|||+||| +.+++++|+++|++||.|.++.++.+. +|||||+|.+.++|+.|++.|||..+.|+.++|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 799999999999999999999987653 589999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 4
No 170
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-17 Score=91.73 Aligned_cols=73 Identities=23% Similarity=0.428 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|+ .+++++|+++|.+||.|..+.+. ..++||||+|.+.++|.+|+..|+|..+.|+.++|..+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999996 89999999999999999999884 24589999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 85 ~ 85 (97)
T 1x5p_A 85 R 85 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=7.6e-18 Score=101.40 Aligned_cols=70 Identities=31% Similarity=0.478 Sum_probs=65.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC--CeeeEEEEEeCCHHHHHHHHHHcCCceee
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g--~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
..++|||+|||+.+++++|+++|++||.|..+.++.+..++ .++|||||+|.+.++|.+|++.|+|..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 46799999999999999999999999999999999998666 79999999999999999999999998765
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=1.3e-18 Score=104.25 Aligned_cols=79 Identities=29% Similarity=0.487 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|++ ++|..+.|+.+.|..+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46789999999999999999999999999999999988789999999999999999999997 89999999999998764
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=92.24 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=61.3
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhcCC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 27 TKLFIGGLSYDTNETV----LKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+.|||+|||..+++++ |+++|.+|| +|.++ ++ |+|||.|.+.++|.+|++.|+|..+.|+.++|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999987 558999995 99887 34 899999999999999999999999999999999
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 80 ~A~ 82 (96)
T 2diu_A 80 FTP 82 (96)
T ss_dssp SSC
T ss_pred ecC
Confidence 875
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.75 E-value=1.2e-17 Score=103.02 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=70.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+.+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|+.|+..++ ..+.|+.+.|..++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 4789999999999999999999999999999999887 68899999999999999999997665 58999999998653
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.5e-17 Score=96.05 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=64.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeE-EEEEeCCHHHHHHHHHHcCCceeee--eeeeeccC
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLVCRT--SKDTDMLS 103 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~~--~~~~v~~~ 103 (105)
-.|||+||++.+++++|+++|++||.|.++.+... + || |||+|.+.++|..|++.|||..+.| +.++|..+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999988642 2 65 9999999999999999999999987 57888876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 5
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.75 E-value=1.3e-17 Score=107.61 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 24 NSRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
...++|||+|||+.+ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|+|..+.|+.++|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456899999999995 999999999999999999999887 889999999999999999999999999999999999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
+.
T Consensus 261 a~ 262 (284)
T 3smz_A 261 CA 262 (284)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=7.3e-18 Score=101.80 Aligned_cols=96 Identities=24% Similarity=0.368 Sum_probs=77.0
Q ss_pred CCCceeccccccccccc----cCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHH
Q 034058 4 LNGSVRFSHSVRFTRLL----SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~ 79 (105)
+++..+..+.+...... ......++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.+
T Consensus 73 l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 73 LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHH
T ss_pred cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHH
Confidence 44555555544332222 122356899999999999999999999999988766 347889999999999999
Q ss_pred HHHHHHHHcCCceeeeeeeeeccCC
Q 034058 80 AAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 80 ~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
+|.+|+..|+|..+.|+.++|.++.
T Consensus 148 ~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHHHHHHhCCCEECCeEEEEEecC
Confidence 9999999999999999999998764
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=3.3e-17 Score=92.19 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEEecCCC-CCeeeEEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034058 24 NSRTKLFIGGLSY-----DTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 24 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
.+++.|+|.||.. .-++++|++.|++||.|.++.++.++.+ +.++|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4577899999963 2368899999999999999999987643 578999999999999999999999999999999
Q ss_pred eeeccCC
Q 034058 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
+.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998753
No 179
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.9e-17 Score=90.56 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=59.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee--eeeeee
Q 034058 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR--TSKDTD 100 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~--~~~~~v 100 (105)
..+..+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ ++|..+. |+.+.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 346789999999999999999999999999999998764 57999999999999883 5666655 677776
Q ss_pred ccC
Q 034058 101 MLS 103 (105)
Q Consensus 101 ~~~ 103 (105)
..+
T Consensus 79 ~~a 81 (89)
T 3d2w_A 79 SNA 81 (89)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=2.1e-17 Score=106.53 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034058 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
+....++|||+|||..+++++|+ ++|++||.|..+.+.. +++++|||||+|.+.++|..|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44568899999999999999966 8999999999998764 6778999999999999999999999999999999
Q ss_pred eeeccCC
Q 034058 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
++|..++
T Consensus 82 l~v~~a~ 88 (282)
T 3pgw_A 82 MRIQYAK 88 (282)
T ss_pred EEEEEec
Confidence 9998653
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=8.1e-18 Score=100.77 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeecc
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~ 102 (105)
+.++|||+|||+++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|..|+.. +..+.|+.+.+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccc
Confidence 357899999999999999999999999999999999988899999999999999999999985 4566666666654
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.73 E-value=6.6e-18 Score=109.33 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCC-CCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 24 NSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRV-TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
...++|||+|||+. +++++|+++|++||.|..+.++.+.. +|.++|||||+|.+.++|.+|+ .|||..+.|+.+.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 35689999999999 99999999999999999999988774 4889999999999999999999 999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
++.
T Consensus 287 ~a~ 289 (292)
T 2ghp_A 287 LAD 289 (292)
T ss_dssp ECC
T ss_pred Eec
Confidence 864
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=2.9e-17 Score=103.40 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 23 ANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 23 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
....++|||+|||+ .+++++|+++|++||.|..+.+..+. +|||||+|.+.++|.+|++.|+|..+.|+.+.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998764 5799999999999999999999999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 106 ~a~ 108 (229)
T 2adc_A 106 LSK 108 (229)
T ss_dssp CCS
T ss_pred Eec
Confidence 653
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=1.4e-16 Score=102.72 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee-eeeeeecc
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-TSKDTDML 102 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-~~~~~v~~ 102 (105)
...++|||+|||..+++++|+++|++||.|..+.+..++ +|||||+|.+.++|.+|+..|||..+. |+.++|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999988554 479999999999999999999999999 99999998
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 76
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=5.9e-17 Score=93.26 Aligned_cols=73 Identities=23% Similarity=0.428 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|+ ++++++|+++|++||.|..+.+. ..+|||||+|.+.++|..|+..|+|..+.|+.++|..+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 69999999999999999999885 24589999999999999999999999999999999876
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 109 ~ 109 (121)
T 2bz2_A 109 R 109 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=7.1e-17 Score=103.38 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=78.0
Q ss_pred CCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHH
Q 034058 4 LNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ 83 (105)
++|..+..+.+..... .+..+|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+
T Consensus 78 l~g~~i~g~~l~v~~a----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 78 LDGTILKSRPLRIRFA----THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp HTTCEETTEECEEEEC----CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHH
T ss_pred cCCcEECCceeEeeec----ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHH
Confidence 5666666555544322 346799999999999999999999999999999999995 89999999999999999999
Q ss_pred HHHHcCCc-eee---eeeeeeccC
Q 034058 84 AIKEMDGL-VCR---TSKDTDMLS 103 (105)
Q Consensus 84 a~~~l~g~-~~~---~~~~~v~~~ 103 (105)
|+..|++. .+. ++.+.|..+
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEEC
T ss_pred HHHHhcCCeEEecCCCceEEEeec
Confidence 99999554 443 788877654
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-17 Score=89.57 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=59.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCce--eeeeeeeec
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV--CRTSKDTDM 101 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~~~~~~v~ 101 (105)
...++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+++ ++.. +.++.++|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 34689999999999999999999999999999988754 568999999999999754 4443 467777776
Q ss_pred cC
Q 034058 102 LS 103 (105)
Q Consensus 102 ~~ 103 (105)
.+
T Consensus 74 ~a 75 (88)
T 1wf0_A 74 NA 75 (88)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=1e-16 Score=101.64 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee-
Q 034058 24 NSRTKLFIGGLSYDT---------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC- 93 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~- 93 (105)
...++|||+||+..+ ++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 457899999999998 79999999999999999998754 58999999999999999999999999
Q ss_pred -----------eeeeeeeccCC
Q 034058 94 -----------RTSKDTDMLST 104 (105)
Q Consensus 94 -----------~~~~~~v~~~~ 104 (105)
.|+.|.|..++
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC
T ss_pred ccccccccccCCCCEEEEEEcc
Confidence 89999998764
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.68 E-value=2.7e-16 Score=100.74 Aligned_cols=75 Identities=33% Similarity=0.507 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
...++|||+|||+++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.++|..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45679999999999999999999999999999988643 489999999999999999999999999999999865
Q ss_pred C
Q 034058 104 T 104 (105)
Q Consensus 104 ~ 104 (105)
.
T Consensus 94 ~ 94 (261)
T 3sde_A 94 T 94 (261)
T ss_dssp C
T ss_pred c
Confidence 3
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=6.1e-17 Score=99.57 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=68.2
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 26 RTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 26 ~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
.++|||+|||+ .+++++|+++|++||.|..+.+..+. +|||||+|.+.++|..|+..|+|..+.|+.++|..+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999987664 5799999999999999999999999999999997653
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=2.7e-16 Score=101.79 Aligned_cols=94 Identities=12% Similarity=0.195 Sum_probs=75.1
Q ss_pred CCCceeccccccccccccCCCCCceEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHH
Q 034058 4 LNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~ 82 (105)
+++..+..+.+.... ...++|||+|||+.+++++|+++|..|| .|..+.++.+. .|.++|||||+|.+.++|.
T Consensus 100 ~~~~~~~g~~i~v~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 100 KTHKVVGQNEIIVSH-----LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp TTTCEETTEECEEEE-----CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHH
T ss_pred hCCcEeCCcEEEEEE-----CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHH
Confidence 455555555444322 3578999999999999999999999999 99999998877 4778999999999999999
Q ss_pred HHHHHcCCceeeeeeeeeccC
Q 034058 83 EAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 83 ~a~~~l~g~~~~~~~~~v~~~ 103 (105)
.|+..|+|..+.|+.+.|..+
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp HHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHhCCCEeCCcEEEEEEC
Confidence 999999999999999998864
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.2e-17 Score=100.88 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
+....++|||+|||+.+++++|+++|..||.+..+ ++.+..++.++|||||+|.+.++|.+|+ .|+|..+.|+.+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 44568899999999999999999999999876442 2233346778899999999999999999 599999999999998
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.+.
T Consensus 87 ~~~ 89 (175)
T 1fje_B 87 KPK 89 (175)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=3.3e-16 Score=98.59 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee-eeeeeecc
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-TSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-~~~~~v~~ 102 (105)
+.++|||+|||+.+++++|+++|++|| .|..+.+..+ .+++|||+|.+.++|.+|+..|+|..+. |+.++|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468899999999999999999999999 9999988543 2479999999999999999999999999 99999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 225 a~ 226 (229)
T 2adc_A 225 SK 226 (229)
T ss_dssp CS
T ss_pred ec
Confidence 65
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=1.9e-16 Score=98.47 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=64.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCe--EEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI--IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+.++|||+|||+.+++++|+++|++||.| ..+.+..+. +..+|+|||+|.+.++|..|+..|||..+.|...
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 45689999999999999999999999998 888887664 4556999999999999999999999999998853
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-15 Score=86.08 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=66.5
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCC
Q 034058 22 DANSRTKLFIGGLSYDTN-----------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
.+.+.++|+|.||..... +++|+++|++||.|..+.+ .+. .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999944332 5789999999999999965 443 2679999999999999999999999
Q ss_pred ceeeeeeeeeccCC
Q 034058 91 LVCRTSKDTDMLST 104 (105)
Q Consensus 91 ~~~~~~~~~v~~~~ 104 (105)
..+.|+.++|.++.
T Consensus 87 ~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 87 RWFGGRQITAQAWD 100 (112)
T ss_dssp CEETTEECEEEECC
T ss_pred CEECCcEEEEEEeC
Confidence 99999999998753
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.65 E-value=6e-17 Score=90.98 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=63.0
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeee
Q 034058 31 IGGLSYDTNETVLKDAF------------GQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKD 98 (105)
Q Consensus 31 v~~l~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 98 (105)
+.|||..+++++|++.| ++||.|.++.++.+. ++.++|||||+|.+.++|.+|+..|||..+.|+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777777666 999999999998876 57889999999999999999999999999999999
Q ss_pred eeccC
Q 034058 99 TDMLS 103 (105)
Q Consensus 99 ~v~~~ 103 (105)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=1e-15 Score=94.09 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee-eeeeeecc
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR-TSKDTDML 102 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-~~~~~v~~ 102 (105)
+.++|||+|||..+++++|+++|++|| .|..+.+..+. +|+|||+|.+.++|.+|+..|||..+. |+.++|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999886532 579999999999999999999999999 99999987
Q ss_pred CC
Q 034058 103 ST 104 (105)
Q Consensus 103 ~~ 104 (105)
++
T Consensus 194 a~ 195 (198)
T 1qm9_A 194 SK 195 (198)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=1.8e-15 Score=90.87 Aligned_cols=73 Identities=19% Similarity=0.463 Sum_probs=64.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
..++|||+|||+.+++++|+++|++| | .+..+.+.. .+|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35799999999999999999999999 6 677776643 3589999999999999999 9999999
Q ss_pred eeeeeeeccCC
Q 034058 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|..+.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999987653
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.5e-15 Score=85.33 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=66.7
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEEecCCC--CCeeeEEEEEeCCHHHHHHHHHHcCCce
Q 034058 25 SRTKLFIGGL--SYDTN--------ETVLKDAFGQHGEIIEVKVICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 25 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~--g~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
+++.|.+.|+ |.... +++|++.|++||.|.++.++.+..+ +.++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667888887 33332 3689999999999999999887643 3578999999999999999999999999
Q ss_pred eeeeeeeeccC
Q 034058 93 CRTSKDTDMLS 103 (105)
Q Consensus 93 ~~~~~~~v~~~ 103 (105)
+.|+.++|.+.
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999864
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=3e-15 Score=91.67 Aligned_cols=73 Identities=19% Similarity=0.469 Sum_probs=63.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
..++|||+|||+.+++++|+++|+.| | .+..+.+. .++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 36799999999999999999999999 5 56666553 34689999999999999999 9999999
Q ss_pred eeeeeeeccCC
Q 034058 94 RTSKDTDMLST 104 (105)
Q Consensus 94 ~~~~~~v~~~~ 104 (105)
.|+.++|..+.
T Consensus 76 ~g~~i~v~~~~ 86 (198)
T 2yh0_A 76 QGQSLKIRRPH 86 (198)
T ss_dssp TTEEEEEECCC
T ss_pred cCceEEEeCCC
Confidence 99999998653
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=5.8e-15 Score=84.56 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=67.8
Q ss_pred CCceEEEcCCCC--CC---CHHHHHHHHhcCCCeEEEEEEecCC----CCCeeeEEEEEeCCHHHHHHHHHHcCCceeee
Q 034058 25 SRTKLFIGGLSY--DT---NETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 25 ~~~~l~v~~l~~--~~---~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
+++.|++.|+-. .+ -+++|++.|++||.|.++.++.+.. ++.++|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999832 22 3578999999999999999988753 35678999999999999999999999999999
Q ss_pred eeeeeccC
Q 034058 96 SKDTDMLS 103 (105)
Q Consensus 96 ~~~~v~~~ 103 (105)
+.++|.++
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999864
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.55 E-value=1.7e-14 Score=95.62 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee
Q 034058 23 ANSRTKLFIGG--LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 23 ~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
+.++.+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45678999998 578999999999999999998877643 3589999999999999999999999884
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=76.42 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccCC
Q 034058 36 YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLST 104 (105)
Q Consensus 36 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~~ 104 (105)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|+.|++.+++ +.++.++|..++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 568999999999999999999887 34679999999999999999998665 468888887754
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-13 Score=77.98 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=66.7
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCC-HHHHHHHHHHcC--Cceeeeee
Q 034058 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAIKEMD--GLVCRTSK 97 (105)
Q Consensus 22 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~-~~~a~~a~~~l~--g~~~~~~~ 97 (105)
.-..+..|||+||++. +++++|+++|++||+|..+.+..+.. .|||.|.+ .++|..|+..++ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3457889999999999 99999999999999999999987652 59999999 899999999995 67788888
Q ss_pred eeeccCC
Q 034058 98 DTDMLST 104 (105)
Q Consensus 98 ~~v~~~~ 104 (105)
+++.+..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8776654
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=1.7e-13 Score=77.98 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=61.4
Q ss_pred CCceEEEcCCCCCC----------CHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceee
Q 034058 25 SRTKLFIGGLSYDT----------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 25 ~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
+++.|.+.|+=..- .+++|++.|++||.|.++.+..+. .+|++||+|.+.++|.+|++.|||..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45677788762211 234788999999999999886553 4789999999999999999999999999
Q ss_pred eeeeeeccC
Q 034058 95 TSKDTDMLS 103 (105)
Q Consensus 95 ~~~~~v~~~ 103 (105)
|+.++|.++
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999999864
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=70.69 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCC----CCCH----HHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee
Q 034058 24 NSRTKLFIGGLSY----DTNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 24 ~~~~~l~v~~l~~----~~~~----~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
+++.+|+|.-.+. +... .+|.+.|++||.+..++++.++ +||+|.+.++|.+|+. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567888876552 2333 5688999999999999998764 8999999999999997 99999999
Q ss_pred eeeeeccCC
Q 034058 96 SKDTDMLST 104 (105)
Q Consensus 96 ~~~~v~~~~ 104 (105)
+.++|.+++
T Consensus 76 r~LkV~lkt 84 (91)
T 2dnr_A 76 RTITIALKS 84 (91)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEeCC
Confidence 999999875
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.20 E-value=7.1e-11 Score=73.83 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCHHHHHHHHhcCCCeEEEEEEecC----CCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeeccC
Q 034058 38 TNETVLKDAFGQHGEIIEVKVICDR----VTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDMLS 103 (105)
Q Consensus 38 ~~~~~l~~~f~~~g~v~~~~~~~~~----~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~~~ 103 (105)
-.+++|.+.|++||.|..+.+..+. .++.++|++||+|.+.++|.+|++.|||..+.|+.+.+.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 3457899999999999999988554 34478999999999999999999999999999999998864
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.9e-11 Score=65.45 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=60.4
Q ss_pred CCCCceEEEcCCCCC-----CCH----HHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCcee
Q 034058 23 ANSRTKLFIGGLSYD-----TNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVC 93 (105)
Q Consensus 23 ~~~~~~l~v~~l~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 93 (105)
.+++.+|+|.-+++. ... .+|.+.|.+||.+..+++..++ +||+|.+.++|.+|+. |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 346778999877643 222 4588899999999999998764 8999999999999997 999999
Q ss_pred eeeeeeeccC
Q 034058 94 RTSKDTDMLS 103 (105)
Q Consensus 94 ~~~~~~v~~~ 103 (105)
.|+.++|.+.
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.80 E-value=4.9e-08 Score=54.48 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeee
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQH-----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDT 99 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 99 (105)
..+++-+-|||..++...++.+..++ |.+..+.+..+. +-|+|+|.+...|-+|.=.|+|..+.|+.++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46778888999999999999999999 999999887775 3599999999999999889999999999998
Q ss_pred ec
Q 034058 100 DM 101 (105)
Q Consensus 100 v~ 101 (105)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.30 E-value=8.3e-06 Score=44.57 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcC
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
...+.+++ ++|+.+...||.++|+.||. ..+.++.|. .|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44566777 99999999999999999994 455666653 59999999999999998663
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.23 E-value=1.2e-05 Score=43.65 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=55.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC--eeeEEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
.+|-|++||+..+++++.+.+.....+....++....+.+ ..+-|||.|.+.+++....+.++|..+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 3688999999999999999999888776666554432322 2345899999999999999999999876443
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=1.6e-05 Score=43.98 Aligned_cols=72 Identities=8% Similarity=-0.022 Sum_probs=58.4
Q ss_pred CceEEEcCCCCCCCH-----HHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeee
Q 034058 26 RTKLFIGGLSYDTNE-----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTD 100 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v 100 (105)
.++|+|.||+..+-. +.++++|..|++.....+...- .-..|.|.+.++|.+|-..|++..+.|+++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 468999999886522 4678899999988776665543 12579999999999999999999999999998
Q ss_pred ccC
Q 034058 101 MLS 103 (105)
Q Consensus 101 ~~~ 103 (105)
.+.
T Consensus 79 YFg 81 (104)
T 1wey_A 79 YFA 81 (104)
T ss_dssp ECC
T ss_pred Eec
Confidence 764
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.93 E-value=2e-05 Score=43.23 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=45.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcC
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
.+.+++ ++|+.+...+|.++|+.|| -..+.++.|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999998 4566777663 59999999999999998764
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.74 E-value=5.1e-05 Score=41.52 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=50.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC--eeeEEEEEeCCHHHHHHHHHHcCCceeeeee
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLVCRTSK 97 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 97 (105)
+-+|-|+.||+..|++++.+.+...-......++....+.+ ...-|||.|.+.+++....+.++|..+.+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 44788999999999999887777654433222222111111 1234899999999999999999999876543
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.0011 Score=36.51 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=45.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc---C--CCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 034058 24 NSRTKLFIGGLSYDTNETVLKDAFGQ---H--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (105)
Q Consensus 24 ~~~~~l~v~~l~~~~~~~~l~~~f~~---~--g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~ 87 (105)
....+|.|.|||+.+.++.|.-.|+. - |.|..++... +-|+|+|.+...|++.++.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 34678999999999999999999976 2 4777776532 3489999999999999955
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00059 Score=38.67 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=49.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeee
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRT 95 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~ 95 (105)
..+.|-|-+.|+.. ...+...|.+||.|.+..... ...+-.|.|.+..+|++|+ ..||..+.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecC
Confidence 46778888999885 456678899999998876521 1247889999999999999 558888764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.11 E-value=0.00038 Score=47.97 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=41.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHH
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~ 85 (105)
.++|+|. .|...++.+|.+.|++||+|..+.+..+. | .|+.|+|.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHH
Confidence 4799997 79999999999999999999999877553 2 69999999999988765
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.52 E-value=0.0028 Score=37.04 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.4
Q ss_pred EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCC
Q 034058 56 VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (105)
Q Consensus 56 ~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g 90 (105)
+.+..+. ..++||+||+|.+.++|++|+..+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 3455554 35889999999999999999987764
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.35 E-value=0.0013 Score=38.20 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=34.3
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHHHc-CCceeeeeeeeeccCC
Q 034058 64 TGQSRGYGFVKFASEAAAGEAIKEM-DGLVCRTSKDTDMLST 104 (105)
Q Consensus 64 ~g~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~~v~~~~ 104 (105)
....+|+++++|.+.++|++|++.+ ||..++| .+.+..++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 3457899999999999999999999 9999999 88776653
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.07 E-value=0.13 Score=35.85 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=43.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcC
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
...++++ +|..+...+|.+.|+.||.+ .+.++.+ ..+||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4556665 88899999999999999954 4444433 259999999999999998885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.57 E-value=0.055 Score=31.08 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=46.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEEec--------CCCC-----CeeeEEEEEeCCHHHHHHHHHHcCCc
Q 034058 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICD--------RVTG-----QSRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 26 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~--------~~~g-----~~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
...|-|=|.|+..... +...|++||.|.. ...... +... ....+-.|+|.+..+|.+|+ ..||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 3456666887765544 5678999998754 211100 0000 02357789999999999999 67888
Q ss_pred eeeeeeeee
Q 034058 92 VCRTSKDTD 100 (105)
Q Consensus 92 ~~~~~~~~v 100 (105)
.+.|.-+-|
T Consensus 85 ii~G~mIGV 93 (132)
T 3p3d_A 85 VFNGVLLGV 93 (132)
T ss_dssp EETTEECEE
T ss_pred EeCcEEEEE
Confidence 887764444
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=80.39 E-value=4 Score=20.44 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=40.0
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCC-----CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCceeeeeeeeec
Q 034058 28 KLFIG-GLSYDTNETVLKDAFGQHG-----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLVCRTSKDTDM 101 (105)
Q Consensus 28 ~l~v~-~l~~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~v~ 101 (105)
++||. +-...+...+|...+..-+ .+-.+.+.. .|.||+.. ...+..++..|++..+.|+.+++.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEEC-TTCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEEC-HHHHHHHHHHhccccCcCceEEEE
Confidence 35553 2233466677777776443 345555532 36788877 455778888999999999999887
Q ss_pred cCC
Q 034058 102 LST 104 (105)
Q Consensus 102 ~~~ 104 (105)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=45.87 E-value=34 Score=18.27 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=42.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHc
Q 034058 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (105)
Q Consensus 25 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l 88 (105)
..+-+-|-|+|..+-..++--..+..|--..|...- |-+.+.|.+..+...|+++|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 356677889999988887766667777666666542 34899999999999999875
No 224
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=36.83 E-value=65 Score=18.94 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=27.0
Q ss_pred CCHHHHHHHHhcCCCe---EEEEEEecCCCCCeeeEEEEE
Q 034058 38 TNETVLKDAFGQHGEI---IEVKVICDRVTGQSRGYGFVK 74 (105)
Q Consensus 38 ~~~~~l~~~f~~~g~v---~~~~~~~~~~~g~~~g~~fv~ 74 (105)
.++++|+++-.+.|.+ .+..+..+..+|..+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5788999999888866 445556564478888887754
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=33.39 E-value=59 Score=20.58 Aligned_cols=32 Identities=13% Similarity=0.360 Sum_probs=24.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEE
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVI 59 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 59 (105)
.-+.|+|+|..++...+.+++.. ..+....+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45778999999999999998877 555555443
No 226
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.81 E-value=47 Score=17.33 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHcCCc
Q 034058 67 SRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
..||-||++....+...+++...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 5699999999998888888777664
No 227
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.32 E-value=36 Score=18.51 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=21.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHcCCce
Q 034058 67 SRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
.+||-||+=.+......|++.+.+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57999999999999999997776543
No 228
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=31.10 E-value=68 Score=19.60 Aligned_cols=28 Identities=4% Similarity=0.076 Sum_probs=24.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHcCCceee
Q 034058 67 SRGYGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
.+||-||+=.+...+..|++.+.+....
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 5789999999999999999999887544
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.01 E-value=91 Score=18.61 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=29.7
Q ss_pred CCHHHHHHHH--hcCCCeEEEEEEecCCCCCeeeEEEEEeC-CHHHHHHHH
Q 034058 38 TNETVLKDAF--GQHGEIIEVKVICDRVTGQSRGYGFVKFA-SEAAAGEAI 85 (105)
Q Consensus 38 ~~~~~l~~~f--~~~g~v~~~~~~~~~~~g~~~g~~fv~f~-~~~~a~~a~ 85 (105)
.....|.+.| +.|.++....+ .+. ..+.|++.|.|. +..-...|+
T Consensus 33 ~s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCChHHHHHHH
Confidence 3446788866 88988764433 333 348899999998 455555554
No 230
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.41 E-value=34 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEe
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVIC 60 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 60 (105)
....|+|+|..++...|.+++.....+....+..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3567899999999999999887655555555443
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=32.17 E-value=14 Score=20.14 Aligned_cols=51 Identities=20% Similarity=0.105 Sum_probs=30.5
Q ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCCeeeE--EEEEeCCHHHHHHHHHHcCCc
Q 034058 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGY--GFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 39 ~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~--~fv~f~~~~~a~~a~~~l~g~ 91 (105)
.++++..+..+.+ +..+.+.....+|+. .| -+=.|.+.++|..|+..|...
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 4555666666665 333444433333432 22 234788999999999888754
No 232
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=25.05 E-value=1e+02 Score=18.32 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=20.6
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceee
Q 034058 70 YGFVKFASEAAAGEAIKEMDGLVCR 94 (105)
Q Consensus 70 ~~fv~f~~~~~a~~a~~~l~g~~~~ 94 (105)
..++-|.+.++|++..+...|..+.
T Consensus 112 ~~l~pFa~k~dAe~Fa~~~GG~Vl~ 136 (175)
T 2hpu_A 112 PEAVPFSSRDEAAAFVLAEGGQVLA 136 (175)
T ss_dssp CCEEEESCHHHHHHHHHHTEEEEEE
T ss_pred CcccCcCCHHHHHHHHHHcCCEEEE
Confidence 5699999999999999887665544
No 233
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.13 E-value=67 Score=15.12 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHcCCce
Q 034058 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLV 92 (105)
Q Consensus 27 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~g~~ 92 (105)
.++.|.++.-..-...+.+.+.. ..+..+.+... .+-+.|.|.+......+++.+ |+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~-Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA-GYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT-TCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc-CCc
Confidence 46788888888777888888888 77877766432 234567777666667777653 444
No 234
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=23.56 E-value=25 Score=22.04 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=24.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEe
Q 034058 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVIC 60 (105)
Q Consensus 29 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 60 (105)
..|+|+|..++...|.+++.....+....++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 37899999999999999888655555554443
No 235
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.95 E-value=57 Score=17.47 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=16.0
Q ss_pred EcCCCCCCCHHHHHHHH-hcCCCe
Q 034058 31 IGGLSYDTNETVLKDAF-GQHGEI 53 (105)
Q Consensus 31 v~~l~~~~~~~~l~~~f-~~~g~v 53 (105)
|.++.+.+|.+|+-..+ ...|+.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~~ 44 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGRT 44 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSCC
T ss_pred EECCCCCCcHHHHHHHHHhccCCC
Confidence 45788999999987755 444543
No 236
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=22.16 E-value=1e+02 Score=16.57 Aligned_cols=48 Identities=8% Similarity=0.269 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHhc-CC---CeEEE-EEEecCCCCCeeeEEEEEeCCHHHHHHH
Q 034058 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEA 84 (105)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~v~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~a 84 (105)
..++..++++-+.+ |+ .+..+ .+......|++.|||.| |++.+.+...
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677888776654 44 33333 35555556667777755 6666666553
No 237
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.15 E-value=1e+02 Score=19.20 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=20.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEE
Q 034058 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEV 56 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 56 (105)
.+.|+|+|..++...+.+++.....+...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 57789999999988887777643334333
No 238
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.13 E-value=78 Score=19.61 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=21.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEE
Q 034058 28 KLFIGGLSYDTNETVLKDAFGQHGEIIE 55 (105)
Q Consensus 28 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~ 55 (105)
.+.|+|+|..++...+..++.....+..
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCce
Confidence 4778999999999988888875433333
No 239
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.46 E-value=96 Score=17.60 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHcCCc
Q 034058 67 SRGYGFVKFASEAAAGEAIKEMDGL 91 (105)
Q Consensus 67 ~~g~~fv~f~~~~~a~~a~~~l~g~ 91 (105)
..||-||++....+...+++...|.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 4689999999988888888777764
No 240
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.07 E-value=44 Score=18.10 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=7.3
Q ss_pred HHHHHHHhcCC
Q 034058 41 TVLKDAFGQHG 51 (105)
Q Consensus 41 ~~l~~~f~~~g 51 (105)
..|+++|.+||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 35777888886
Done!