BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034060
         (105 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5XH17|SCRN2_XENLA Secernin-2 OS=Xenopus laevis GN=scrn2 PE=2 SV=1
          Length = 428

 Score = 33.1 bits (74), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 10  PWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEE 56
           PW+  P FG+ D   Q+P +     +  E+ +Q++R +  A  GN+E
Sbjct: 327 PWVLSPTFGEQDPVNQIPRFQTQVDRRHELYRQHQRAL-EACKGNKE 372


>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
           PE=3 SV=1
          Length = 1160

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 10  PWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSR 49
           P LS+P   +WDQ G++ D  +D  K +E  K+ ++D+ R
Sbjct: 134 PGLSIPNKVEWDQ-GKIVDVPIDDEKTKEELKRKQQDMDR 172


>sp|P45357|HXUC2_HAEIF Heme/hemopexin utilization protein C OS=Haemophilus influenzae
           GN=hxuC PE=3 SV=1
          Length = 725

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 46  DVSRASLGNEEDFINPTAPSNNKAHNNQDDEQ-----HHFHQSHHHHSPTTRRSFLSYFN 100
           D +R  L + E     TAPSNN+  N   +EQ       FH+ ++   P  + S   +++
Sbjct: 229 DANRVELSHRETRFKQTAPSNNEVENELTNEQITDQIREFHKPNNGSPPKAKPSQEEFYS 288


>sp|Q4QNS6|HXUC_HAEI8 Heme/hemopexin utilization protein C OS=Haemophilus influenzae
           (strain 86-028NP) GN=hxuC PE=3 SV=1
          Length = 709

 Score = 29.3 bits (64), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 46  DVSRASLGNEEDFINPTAPSNNKAHNNQDDEQ-----HHFHQSHHHHSPTTRRSFLSYFN 100
           D +R  L + E     TAP NN+A N   +EQ     + +H   ++  P  + S   +++
Sbjct: 229 DANRVELSHRETRFKQTAPGNNEAKNELTNEQIIEKINEYHNPLNNFPPKAKPSLEEFYS 288


>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1
           SV=1
          Length = 211

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 14  VPQFGDWDQK--GQVPDYSLDFSKIREMR 40
           VP+FGDWD+        Y+  F+K+RE R
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREER 176


>sp|Q66WV0|RBR1_NICBE Retinoblastoma-related protein 1 OS=Nicotiana benthamiana GN=RBR1
           PE=2 SV=1
          Length = 1003

 Score = 28.9 bits (63), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 7   KNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASL--GNEEDFINPTAP 64
           K  P LS     DW+++ +V +   +F  +  + K  KR      L  GN ED   P+A 
Sbjct: 125 KVGPTLSNLYGSDWEKRLEVKELQTNFVHLSLLSKYYKRAYQELFLASGNNED--KPSAT 182

Query: 65  SNNKAH 70
           SN+  H
Sbjct: 183 SNSAIH 188


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,679,240
Number of Sequences: 539616
Number of extensions: 1702879
Number of successful extensions: 11417
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 9370
Number of HSP's gapped (non-prelim): 1329
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)