Query 034060
Match_columns 105
No_of_seqs 82 out of 84
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 15:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nud_C RIN4, RPM1-interacting 99.6 2.5E-17 8.4E-22 97.9 -0.9 30 11-40 4-35 (35)
2 2k5k_A Uncharacterized protein 56.3 5 0.00017 26.5 1.6 19 11-29 44-62 (70)
3 1jxh_A Phosphomethylpyrimidine 53.1 3.6 0.00012 30.1 0.5 11 88-98 21-31 (288)
4 3tcm_A Alanine aminotransferas 45.5 5.2 0.00018 31.4 0.4 17 75-91 5-21 (500)
5 1ac0_A Glucoamylase; hydrolase 25.0 28 0.00096 22.4 1.3 12 12-23 27-38 (108)
6 4hg6_A Cellulose synthase subu 19.2 42 0.0014 28.7 1.5 51 37-87 740-802 (802)
7 2axq_A Saccharopine dehydrogen 18.9 25 0.00085 28.6 0.1 24 73-96 4-27 (467)
8 3oka_C N-terminal His-affinity 16.8 49 0.0017 17.2 0.9 12 78-89 3-14 (21)
9 2lk0_A RNA-binding protein 5; 16.3 29 0.00099 18.8 -0.1 7 15-21 1-7 (32)
10 3cio_A ETK, tyrosine-protein k 15.2 34 0.0012 25.5 0.0 12 72-83 2-13 (299)
No 1
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=99.61 E-value=2.5e-17 Score=97.94 Aligned_cols=30 Identities=43% Similarity=0.842 Sum_probs=19.4
Q ss_pred CCCCCCCCCccCCCC--CCCchhhhHHHHHHH
Q 034060 11 WLSVPQFGDWDQKGQ--VPDYSLDFSKIREMR 40 (105)
Q Consensus 11 ~~~vPkFG~WD~k~~--~~~ys~~FsK~Re~k 40 (105)
.++|||||+||++++ +++|||||+||||+|
T Consensus 4 ~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K 35 (35)
T 2nud_C 4 VTVVPKFGDWDENNPSSADGYTHIFNKVREER 35 (35)
T ss_dssp -----CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred CCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence 679999999999865 689999999999987
No 2
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=56.30 E-value=5 Score=26.49 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=14.2
Q ss_pred CCCCCCCCCccCCCCCCCc
Q 034060 11 WLSVPQFGDWDQKGQVPDY 29 (105)
Q Consensus 11 ~~~vPkFG~WD~k~~~~~y 29 (105)
+.---.||||..||-+.+|
T Consensus 44 G~EPtRYGDWE~kG~a~~~ 62 (70)
T 2k5k_A 44 GPEPVRFGDWEKKGIAIDF 62 (70)
T ss_dssp CCCCCSCCCCCCCSTTCCC
T ss_pred CCCCcccccchhcceeehh
Confidence 3333479999999987776
No 3
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=53.09 E-value=3.6 Score=30.15 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=5.4
Q ss_pred CCcccccccee
Q 034060 88 SPTTRRSFLSY 98 (105)
Q Consensus 88 spt~rk~fLsy 98 (105)
+++..+++|+.
T Consensus 21 ~~~~~~~vl~i 31 (288)
T 1jxh_A 21 RHMQRINALTI 31 (288)
T ss_dssp --CCCCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 45555666664
No 4
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=45.51 E-value=5.2 Score=31.44 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=0.4
Q ss_pred CcCCCCCCCcCCCCCcc
Q 034060 75 DEQHHFHQSHHHHSPTT 91 (105)
Q Consensus 75 ~h~~~~~~~~~~~spt~ 91 (105)
||+||||.|+++++|..
T Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (500)
T 3tcm_A 5 HHHHHHHGTDDDDKMAA 21 (500)
T ss_dssp ----------------C
T ss_pred ccccccCCCCCCCCccc
Confidence 34455555656666643
No 5
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=24.96 E-value=28 Score=22.41 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=10.0
Q ss_pred CCCCCCCCccCC
Q 034060 12 LSVPQFGDWDQK 23 (105)
Q Consensus 12 ~~vPkFG~WD~k 23 (105)
-+.|.||.||..
T Consensus 27 Gs~~~LG~W~~~ 38 (108)
T 1ac0_A 27 GSISQLGDWETS 38 (108)
T ss_dssp CSSSTTCSSSGG
T ss_pred eCcHHHCCCCHH
Confidence 367999999986
No 6
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=19.15 E-value=42 Score=28.67 Aligned_cols=51 Identities=22% Similarity=0.533 Sum_probs=0.0
Q ss_pred HHHHhhhccccccccCCCC--------cccCCCCCCCCCCCCC----CCCCcCCCCCCCcCCC
Q 034060 37 REMRKQNKRDVSRASLGNE--------EDFINPTAPSNNKAHN----NQDDEQHHFHQSHHHH 87 (105)
Q Consensus 37 Re~kK~~k~~~~~aSlGne--------eel~a~~~~~~~~~~~----~~~~h~~~~~~~~~~~ 87 (105)
|+.++..+...--..+|.| .++.+++......+.. +++||+||.-|+||||
T Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (802)
T 4hg6_A 740 RRHEEPKEKQAHLLAFGTDFSTEPDWAGELLDPTAQVSARPNTVAWGSNHHHHHHKLHHHHHH 802 (802)
T ss_dssp HHHHSCCCCCCCSSSCSCCC-------------------------------------------
T ss_pred hhccCcccCCceeeeecccccCCcccccCCCCccccccCCCccccccccccccchhcccccCC
No 7
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=18.95 E-value=25 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCcCCCCCccccccc
Q 034060 73 QDDEQHHFHQSHHHHSPTTRRSFL 96 (105)
Q Consensus 73 ~~~h~~~~~~~~~~~spt~rk~fL 96 (105)
++||+||||.+.|-......+++|
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~k~Vl 27 (467)
T 2axq_A 4 HHHHHHHHHSSGHIEGRHMGKNVL 27 (467)
T ss_dssp -------------------CEEEE
T ss_pred ccccccccccCCccccCCCCCEEE
No 8
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=16.83 E-value=49 Score=17.18 Aligned_cols=12 Identities=67% Similarity=1.262 Sum_probs=0.0
Q ss_pred CCCCCCcCCCCC
Q 034060 78 HHFHQSHHHHSP 89 (105)
Q Consensus 78 ~~~~~~~~~~sp 89 (105)
+|+|+.+|++|.
T Consensus 3 hhhhhhhhhhss 14 (21)
T 3oka_C 3 HHHHHHHHHHSS 14 (26)
T ss_pred cccccccccccc
No 9
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=16.26 E-value=29 Score=18.79 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=0.0
Q ss_pred CCCCCcc
Q 034060 15 PQFGDWD 21 (105)
Q Consensus 15 PkFG~WD 21 (105)
|+.|||.
T Consensus 1 pk~gDW~ 7 (32)
T 2lk0_A 1 XKFEDWL 7 (32)
T ss_dssp -CCSEEE
T ss_pred CCCCCCC
No 10
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=15.16 E-value=34 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=0.0
Q ss_pred CCCCcCCCCCCC
Q 034060 72 NQDDEQHHFHQS 83 (105)
Q Consensus 72 ~~~~h~~~~~~~ 83 (105)
+++||+||||++
T Consensus 2 ~~~~~~~~~~~~ 13 (299)
T 3cio_A 2 GHHHHHHHHHHS 13 (299)
T ss_dssp ------------
T ss_pred Cccccccccccc
Done!