Query 034060
Match_columns 105
No_of_seqs 82 out of 84
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 15:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034060.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034060hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bmva2 b.3.1.1 (A:579-683) Cy 22.8 11 0.00083 23.0 0.6 11 13-23 28-38 (105)
2 d1cyga2 b.3.1.1 (A:575-680) Cy 22.3 11 0.00082 22.9 0.6 12 13-24 28-39 (106)
3 d1vema1 b.3.1.1 (A:418-516) be 19.0 19 0.0014 21.8 1.1 11 13-23 25-35 (99)
4 d1ufia_ a.30.4.1 (A:) Dimerisa 18.5 7.7 0.00056 22.4 -0.8 8 12-19 2-9 (48)
5 d1qhoa2 b.3.1.1 (A:577-686) Cy 18.5 21 0.0015 21.7 1.3 12 13-24 29-40 (110)
6 d1wu9a1 a.245.1.1 (A:191-249) 16.0 25 0.0018 20.5 1.1 11 31-41 26-36 (59)
7 d1kula_ b.3.1.1 (A:) Glucoamyl 15.7 23 0.0017 21.4 0.9 12 13-24 28-39 (108)
8 d1v4aa1 a.24.16.4 (A:287-437) 14.9 22 0.0016 22.2 0.6 17 27-44 2-18 (151)
9 d2fsqa1 d.61.1.4 (A:6-237) Put 11.7 39 0.0029 23.8 1.3 25 9-33 12-40 (232)
10 d1nc8a_ g.40.1.1 (A:) HIV nucl 11.1 25 0.0018 18.4 -0.0 10 92-101 3-12 (29)
No 1
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=22.79 E-value=11 Score=23.01 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=9.5
Q ss_pred CCCCCCCccCC
Q 034060 13 SVPQFGDWDQK 23 (105)
Q Consensus 13 ~vPkFG~WD~k 23 (105)
+.|++|.||..
T Consensus 28 s~~~LG~W~~~ 38 (105)
T d3bmva2 28 NVAELGNWDTS 38 (105)
T ss_dssp SSGGGTTTCGG
T ss_pred CcHHHCCCCHH
Confidence 57999999975
No 2
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.32 E-value=11 Score=22.93 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=9.9
Q ss_pred CCCCCCCccCCC
Q 034060 13 SVPQFGDWDQKG 24 (105)
Q Consensus 13 ~vPkFG~WD~k~ 24 (105)
+.|++|.||.+.
T Consensus 28 s~~~LG~W~~~~ 39 (106)
T d1cyga2 28 NVYELGNWDTSK 39 (106)
T ss_dssp SSGGGBTTCGGG
T ss_pred CHHHHCCCCHHH
Confidence 579999999763
No 3
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=19.03 E-value=19 Score=21.84 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=9.5
Q ss_pred CCCCCCCccCC
Q 034060 13 SVPQFGDWDQK 23 (105)
Q Consensus 13 ~vPkFG~WD~k 23 (105)
+.|.+|.||.+
T Consensus 25 s~~eLG~W~~~ 35 (99)
T d1vema1 25 NRAELGSWDTK 35 (99)
T ss_dssp SSGGGTTTCSS
T ss_pred CcHHHCCCChh
Confidence 57999999976
No 4
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.53 E-value=7.7 Score=22.36 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q 034060 12 LSVPQFGD 19 (105)
Q Consensus 12 ~~vPkFG~ 19 (105)
++||.|||
T Consensus 2 ~pvpsfge 9 (48)
T d1ufia_ 2 MPVPSFGE 9 (48)
T ss_dssp CCCCCHHH
T ss_pred CCCccHHH
Confidence 57888886
No 5
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=18.53 E-value=21 Score=21.73 Aligned_cols=12 Identities=25% Similarity=1.060 Sum_probs=10.0
Q ss_pred CCCCCCCccCCC
Q 034060 13 SVPQFGDWDQKG 24 (105)
Q Consensus 13 ~vPkFG~WD~k~ 24 (105)
+.|++|.||...
T Consensus 29 ~~~~LG~W~~~~ 40 (110)
T d1qhoa2 29 NIPELGNWSTDT 40 (110)
T ss_dssp SSGGGTTTCCCC
T ss_pred CcHHHCCCChhh
Confidence 579999999863
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.03 E-value=25 Score=20.55 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=8.6
Q ss_pred hhhHHHHHHHh
Q 034060 31 LDFSKIREMRK 41 (105)
Q Consensus 31 ~~FsK~Re~kK 41 (105)
++|+|+|+-.=
T Consensus 26 FYF~KLRdIEi 36 (59)
T d1wu9a1 26 FYFGKLRNIEL 36 (59)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999998653
No 7
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}
Probab=15.69 E-value=23 Score=21.39 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=10.0
Q ss_pred CCCCCCCccCCC
Q 034060 13 SVPQFGDWDQKG 24 (105)
Q Consensus 13 ~vPkFG~WD~k~ 24 (105)
+.|++|.||...
T Consensus 28 s~~~LG~W~~~~ 39 (108)
T d1kula_ 28 SISQLGDWETSD 39 (108)
T ss_dssp SSGGGTTTCTTT
T ss_pred ChHHhCCCCHHH
Confidence 679999999764
No 8
>d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
Probab=14.93 E-value=22 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=13.2
Q ss_pred CCchhhhHHHHHHHhhhc
Q 034060 27 PDYSLDFSKIREMRKQNK 44 (105)
Q Consensus 27 ~~ys~~FsK~Re~kK~~k 44 (105)
-|||++ .-||+||..-.
T Consensus 2 ~d~~~i-~~v~~MR~ri~ 18 (151)
T d1v4aa1 2 IDFSVI-QSLRNMKGMIA 18 (151)
T ss_dssp CCHHHH-HHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHHH
Confidence 378877 88999998743
No 9
>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.72 E-value=39 Score=23.80 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=18.0
Q ss_pred CCCCCCCCCC-CccCCC---CCCCchhhh
Q 034060 9 APWLSVPQFG-DWDQKG---QVPDYSLDF 33 (105)
Q Consensus 9 ~~~~~vPkFG-~WD~k~---~~~~ys~~F 33 (105)
..+.+.|.+| .||.+| +.+|||+|+
T Consensus 12 ~~~~p~~~lg~Kfd~~G~~lpFpGnTiI~ 40 (232)
T d2fsqa1 12 NHDQPPRHLGSRFSAEGEFLPEPGNTVVC 40 (232)
T ss_dssp GCSSCCTTBTTTBCTTSCBCCCCEEEEEE
T ss_pred cCCCCChHHhhcCCCCCCEecCCCCEEEE
Confidence 4466777776 577664 589999985
No 10
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=11.12 E-value=25 Score=18.40 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=8.0
Q ss_pred ccccceeeee
Q 034060 92 RRSFLSYFNC 101 (105)
Q Consensus 92 rk~fLsyf~C 101 (105)
.|+.+.+|||
T Consensus 3 qr~~ikCfNC 12 (29)
T d1nc8a_ 3 QRKVIRCWNC 12 (29)
T ss_dssp CCCCCBCTTT
T ss_pred CcceeEeecC
Confidence 4677889998
Done!