BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034064
(104 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa Japonica
Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 32 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 91
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 92 LRGDSVIIVLRNPK 105
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 32 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 91
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 92 LRGDSVIIVLRNPK 105
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 90
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 91 LRGDSVIIVLRNPK 104
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 90
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 91 LRGDSVIIVLRNPK 104
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 34 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 93
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 94 LRGDSVIIVLRNPK 107
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 32 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 91
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 92 LRGDSVIIVLRNPK 105
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 29 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 88
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 89 LRGDSVIIVLRNPK 102
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 32 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 91
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 92 LRGDSVIIVLRNPK 105
>gi|57900175|dbj|BAD88260.1| putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
Length = 431
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/75 (93%), Positives = 73/75 (97%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
L VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKM
Sbjct: 357 LGVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKM 416
Query: 90 FLRGDSVIIVLRNPK 104
FLRGDSVIIVL+NPK
Sbjct: 417 FLRGDSVIIVLKNPK 431
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 103
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA+PVNKDRFISKMF
Sbjct: 30 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAMPVNKDRFISKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 90 LRGDSVIIVLRNPK 103
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 97 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMF 156
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 157 LRGDSVIIVLRNPK 170
>gi|218189807|gb|EEC72234.1| hypothetical protein OsI_05349 [Oryza sativa Indica Group]
Length = 96
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/82 (90%), Positives = 76/82 (92%)
Query: 23 WALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 82
W I + VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 15 WVRPQIFVAVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 74
Query: 83 DRFISKMFLRGDSVIIVLRNPK 104
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 75 DRFISKMFLRGDSVIIVLRNPK 96
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/73 (98%), Positives = 73/73 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 90
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVLRNP
Sbjct: 91 LRGDSVIIVLRNP 103
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/73 (98%), Positives = 73/73 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 32 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 91
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVLRNP
Sbjct: 92 LRGDSVIIVLRNP 104
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 34 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 93
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 94 LRGDSVIIVLRNPK 107
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 32 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAHPVNKDRFISKMF 91
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 92 LRGDSVIIVLRNPK 105
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+DRFISKMF
Sbjct: 36 QVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMF 95
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 96 LRGDSVIIVLRNPK 109
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+DRFISKMF
Sbjct: 32 QVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMF 91
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 92 LRGDSVIIVLRNPK 105
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 104
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 90
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 91 LRGDSVIIVLRNPK 104
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+DRFISKMF
Sbjct: 36 QVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMF 95
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 96 LRGDSVIIVLRNPK 109
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 74/74 (100%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+DRFISKMF
Sbjct: 35 QVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMF 90
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 91 LRGDSVIIVLRNPK 104
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 30 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 90 LRGDSVIIVLRNPK 103
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 34 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMF 93
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 94 LRGDSVIIVLRNPK 107
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKK+ PVNKDRFISKMF
Sbjct: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKSQPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|222619939|gb|EEE56071.1| hypothetical protein OsJ_04893 [Oryza sativa Japonica Group]
Length = 104
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/74 (94%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 31 QVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 90
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVL+NPK
Sbjct: 91 LRGDSVIIVLKNPK 104
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 72/74 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 24 QVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 83
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 84 LRGDSVIIVLRNPK 97
>gi|357495277|ref|XP_003617927.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519262|gb|AET00886.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 81
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 72/74 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 8 QVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 67
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 68 LRGDSVIIVLRNPK 81
>gi|380027112|ref|XP_003697276.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis florea]
Length = 133
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/73 (93%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMF
Sbjct: 54 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMF 113
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 114 LRGDSVILVLRNP 126
>gi|66500455|ref|XP_397475.2| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Apis mellifera]
gi|340709815|ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus terrestris]
gi|350410361|ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus impatiens]
gi|383861912|ref|XP_003706428.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Megachile rotundata]
Length = 120
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/73 (93%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVILVLRNP 113
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/74 (94%), Positives = 71/74 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV AFDRHCNMVLENVREMW E+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 35 QVLINCRNNKKLLGRVGAFDRHCNMVLENVREMWAEVPKTGKGKKKAQPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 95 LRGDSVIIVLRNPK 108
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/73 (93%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMF
Sbjct: 43 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMF 102
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 103 LRGDSVILVLRNP 115
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/74 (95%), Positives = 72/74 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 86 QVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 145
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 146 LRGDSVIIVLRNPK 159
>gi|156544546|ref|XP_001607849.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Nasonia vitripennis]
Length = 120
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V+RNP
Sbjct: 101 LRGDSVILVVRNP 113
>gi|307177333|gb|EFN66506.1| Probable small nuclear ribonucleoprotein Sm D2 [Camponotus
floridanus]
Length = 137
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFI KMF
Sbjct: 58 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFIPKMF 117
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 118 LRGDSVILVLRNP 130
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK+ PVNKDRFISKMF
Sbjct: 42 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKSKPVNKDRFISKMF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|307194529|gb|EFN76821.1| Probable small nuclear ribonucleoprotein Sm D2 [Harpegnathos
saltator]
gi|322786953|gb|EFZ13177.1| hypothetical protein SINV_00701 [Solenopsis invicta]
Length = 110
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFI KMF
Sbjct: 31 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFIPKMF 90
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 91 LRGDSVILVLRNP 103
>gi|115629150|ref|XP_001178435.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
gi|115918091|ref|XP_001177365.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
Length = 118
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE PK GKGKK++ PVNKDR+I+KMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPKAGKGKKRSKPVNKDRYITKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVILVLRNP 113
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRHCNM+LENV+EMWTE+PKTGKGKK + PVNKDRFI K+F
Sbjct: 37 QVLINCRNNRKLLGRVKAFDRHCNMILENVKEMWTEIPKTGKGKKGSTPVNKDRFIPKLF 96
Query: 91 LRGDSVIIVLRNPK 104
+RGDSVI+VLRNPK
Sbjct: 97 IRGDSVILVLRNPK 110
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 70/74 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL RV+AFDRHCNMVLENV+E+WTE+PKTGKG KA PVNKDRFISKMF
Sbjct: 30 QVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGAAKAKPVNKDRFISKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 90 LRGDSVILVLRNPK 103
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS) [Ostreococcus
tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 70/74 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL RV+AFDRHCNMVLENV+E+WTE+PKTGKG KA PVNKDRF+SKMF
Sbjct: 30 QVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGSAKAKPVNKDRFVSKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 90 LRGDSVILVLRNPK 103
>gi|159480556|ref|XP_001698348.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
gi|158282088|gb|EDP07841.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
Length = 110
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 70/74 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN KLL RV+AFDRHCNM+LENV+EMWTE+PKTGKG+K + PVNKDRF+SKMF
Sbjct: 37 QVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGQKASRPVNKDRFVSKMF 96
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 97 LRGDSVIMVLRNPK 110
>gi|302839956|ref|XP_002951534.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
gi|300263143|gb|EFJ47345.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
Length = 110
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN KLL RV+AFDRHCNM+LENV+EMWTE+PKTGKG K + PVNKDRF+SKMF
Sbjct: 37 QVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGSKGSRPVNKDRFVSKMF 96
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 97 LRGDSVIMVLRNPK 110
>gi|307108556|gb|EFN56796.1| hypothetical protein CHLNCDRAFT_22041 [Chlorella variabilis]
Length = 115
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/80 (80%), Positives = 71/80 (88%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L +QVLINCRNN+KLLGRV+AFDRHCNMVLENV+E WTE+PK GKG K + PVNKDR
Sbjct: 36 LRVACVQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEFWTEIPKRGKGAKASKPVNKDR 95
Query: 85 FISKMFLRGDSVIIVLRNPK 104
FISKMFLRGDSVI+VLRNPK
Sbjct: 96 FISKMFLRGDSVILVLRNPK 115
>gi|255564180|ref|XP_002523087.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223537649|gb|EEF39272.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 169
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 76/100 (76%), Gaps = 10/100 (10%)
Query: 14 QTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE------- 66
T L C A +VL INCRNNKKLLGRVR FDRHCNMVLENVREMWTE
Sbjct: 71 STRLTWVCLPARLLLVL-CSINCRNNKKLLGRVRTFDRHCNMVLENVREMWTEVYNYTLF 129
Query: 67 --LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNP+
Sbjct: 130 IWVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPE 169
>gi|428173912|gb|EKX42811.1| hypothetical protein GUITHDRAFT_153446 [Guillardia theta CCMP2712]
Length = 99
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 69/73 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+TGKGK K+ PVNKDRFISKMF
Sbjct: 26 QVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPRTGKGKAKSKPVNKDRFISKMF 85
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 86 LRGDSVIMVLKNP 98
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGK KK PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN-PVNKDRYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 100 LRGDSVILVLKNP 112
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGK KK PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN-PVNKDRYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 100 LRGDSVILVLKNP 112
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 69/74 (93%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 1055 QVLINCRNNRKLLGRVKAFDRHCNMVLENVREMWTEVPKTGKGKKKAKPVNKDRFISKMF 1114
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVL+NPK
Sbjct: 1115 LRGDSVIIVLKNPK 1128
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG KK VNKD+FISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG-KKGKAVNKDKFISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 100 LRGDSVILVLRNP 112
>gi|221114937|ref|XP_002158231.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Hydra magnipapillata]
Length = 118
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 70/73 (95%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMW E+PKTGKG KKA P+NKDR+I+KMF
Sbjct: 41 QVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKG-KKAKPINKDRYIAKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 100 LRGDSVILVLKNP 112
>gi|328768266|gb|EGF78313.1| hypothetical protein BATDEDRAFT_90808 [Batrachochytrium
dendrobatidis JAM81]
Length = 115
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 67/72 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+ CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDRFISKMF
Sbjct: 42 QVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDRFISKMF 101
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 102 LRGDSVILVLRN 113
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGK KK PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKSKKNN-PVNKDRYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 100 LRGDSVILVLKNP 112
>gi|391344476|ref|XP_003746524.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Metaseiulus occidentalis]
Length = 116
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 67/73 (91%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE P+T KG +K PVNKDRFI KMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPRTAKG-RKGQPVNKDRFIPKMF 98
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVLRNP
Sbjct: 99 LRGDSVIIVLRNP 111
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG KK VNKD+FISKMF
Sbjct: 31 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG-KKGKAVNKDKFISKMF 89
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 90 LRGDSVILVLRNP 102
>gi|297598393|ref|NP_001045506.2| Os01g0967000 [Oryza sativa Japonica Group]
gi|255674111|dbj|BAF07420.2| Os01g0967000 [Oryza sativa Japonica Group]
Length = 226
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 66/74 (89%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
L VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKM
Sbjct: 153 LGVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKM 212
Query: 90 FLRGDSVIIVLRNP 103
FLRGDS NP
Sbjct: 213 FLRGDSGNQGKENP 226
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 71/74 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLLGRV+AFDRHCNMVLENV+E+WTE+PKTGKG KKA ++KDRF+SKMF
Sbjct: 28 QVLISCRNNRKLLGRVKAFDRHCNMVLENVKELWTEIPKTGKGCKKARTISKDRFLSKMF 87
Query: 91 LRGDSVIIVLRNPK 104
+RGDSVI+VLRNPK
Sbjct: 88 IRGDSVILVLRNPK 101
>gi|196006700|ref|XP_002113216.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
gi|190583620|gb|EDV23690.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
Length = 173
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+L RV+AFDRHCNMVLENV+EMWTE P+TGKG +KA PVNKDR+ISKMF
Sbjct: 93 QVLINCRNNRKILARVKAFDRHCNMVLENVKEMWTETPRTGKG-RKAKPVNKDRYISKMF 151
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 152 LRGDSVILVLKNP 164
>gi|313226859|emb|CBY22004.1| unnamed protein product [Oikopleura dioica]
gi|313242576|emb|CBY34708.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 66/73 (90%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KL+GRV+AFDRHCNMVLENV+EMW E PKT KG K PVN+DRFISKMF
Sbjct: 42 QVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTAKG-KGGQPVNRDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVL+NP
Sbjct: 101 LRGDSVIIVLKNP 113
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/74 (94%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 30 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 90 LRGDSVIIVLRNPK 103
>gi|298710498|emb|CBJ25562.1| small nuclear ribonucleoprotein D2-like protein [Ectocarpus
siliculosus]
Length = 82
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNN KLL R++AFDRHCNMVL +V+EMWTE PKTGKG+KKA VNKDR++SKMF
Sbjct: 9 QVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMF 68
Query: 91 LRGDSVIIVLRNP 103
LRGDSV++VLRNP
Sbjct: 69 LRGDSVVLVLRNP 81
>gi|303274376|ref|XP_003056509.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
gi|226462593|gb|EEH59885.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
Length = 103
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 68/74 (91%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLG+++AFDRHCNMVLENV+E W E+ KTGKG K+ P++K+RFISKMF
Sbjct: 30 QVLINCRNNRKLLGQIKAFDRHCNMVLENVKEYWLEVSKTGKGVKRTTPIHKERFISKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 90 LRGDSVILVLRNPK 103
>gi|313214959|emb|CBY41164.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 66/73 (90%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KL+GRV+AFDRHCNMVLENV+EMW E PKT KG K PVN+DRFISKMF
Sbjct: 42 QVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTSKG-KGGQPVNRDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVL+NP
Sbjct: 101 LRGDSVIIVLKNP 113
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDRFISKMF
Sbjct: 42 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRFISKMF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/74 (93%), Positives = 73/74 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 26 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMF 85
Query: 91 LRGDSVIIVLRNPK 104
LRG+SVIIVLRNPK
Sbjct: 86 LRGESVIIVLRNPK 99
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+LGRV+AFDRH NMVLENVRE+WTE+PK G KK PVNKDRF+SKMF
Sbjct: 37 QVLINCRNNRKILGRVKAFDRHFNMVLENVRELWTEVPKGGSNKK---PVNKDRFVSKMF 93
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 94 LRGDSVIMVLRNPK 107
>gi|384500116|gb|EIE90607.1| small nuclear ribonucleoprotein Sm D2 [Rhizopus delemar RA 99-880]
Length = 113
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 66/72 (91%), Gaps = 1/72 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LI+CRNN KLL RV+AFDRHCNMVLENV+EMWTE P+TGKG KA PVNKDRF+SKMF
Sbjct: 41 QILISCRNNHKLLARVKAFDRHCNMVLENVKEMWTETPRTGKG-SKAKPVNKDRFVSKMF 99
Query: 91 LRGDSVIIVLRN 102
LRGD+V++VLRN
Sbjct: 100 LRGDTVVLVLRN 111
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMF
Sbjct: 46 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMF 105
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 106 LRGDSVILVLRNP 118
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMF
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%), Gaps = 1/74 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNN+KLLGRV+AFDRH NMVLENV EMWTE PK KG KKA PVN++R+ISKMF
Sbjct: 31 QVLVNCRNNRKLLGRVKAFDRHMNMVLENVCEMWTETPKPHKG-KKAHPVNRERYISKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIV+RNPK
Sbjct: 90 LRGDSVIIVIRNPK 103
>gi|405978739|gb|EKC43103.1| Putative small nuclear ribonucleoprotein Sm D2 [Crassostrea gigas]
Length = 119
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMF
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI++LRNP
Sbjct: 102 LRGDSVILILRNP 114
>gi|112253319|gb|ABI14247.1| Sm-like protein [Pfiesteria piscicida]
gi|112253321|gb|ABI14248.1| small nuclear ribonucleoprotein D2-like protein [Pfiesteria
piscicida]
Length = 101
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%), Gaps = 2/74 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+L RV+AFDRH NMVLENVREMWTE+P GKKKA PVNKDRFI+K+F
Sbjct: 30 QVLINCRNNRKILARVKAFDRHSNMVLENVREMWTEVPHG--GKKKAKPVNKDRFITKLF 87
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 88 LRGDSVILVLRNPK 101
>gi|260835152|ref|XP_002612573.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
gi|229297951|gb|EEN68582.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
Length = 116
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ P+NKDR+ISKMF
Sbjct: 38 QVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPINKDRYISKMF 97
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 98 LRGDSVILVLRNP 110
>gi|339252990|ref|XP_003371718.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
gi|316967993|gb|EFV52337.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
Length = 118
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 68/74 (91%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CR+N+KL+ RV+AFDRHCNM+LENV+EMWTE+P+ GKG+K+ VNKDRFISKMF
Sbjct: 36 QVLIDCRHNRKLIARVKAFDRHCNMILENVKEMWTEIPRVGKGQKRGNAVNKDRFISKMF 95
Query: 91 LRGDSVIIVLRNPK 104
LRGD VI+V++NP+
Sbjct: 96 LRGDIVILVMKNPQ 109
>gi|22203734|gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Azumapecten
farreri]
Length = 119
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMF
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|225712108|gb|ACO11900.1| Probable small nuclear ribonucleoprotein Sm D2 [Lepeophtheirus
salmonis]
Length = 115
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLE+V+EMWTE+PKTGKGKKKA PVNKDR+ISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 100 LRGDSVILVLRNP 112
>gi|328768108|gb|EGF78155.1| hypothetical protein BATDEDRAFT_91018 [Batrachochytrium
dendrobatidis JAM81]
Length = 109
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+ CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDRFISKMF
Sbjct: 42 QVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDRFISKMF 101
Query: 91 LRGDSVI 97
LRGDS I
Sbjct: 102 LRGDSGI 108
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
Length = 110
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTELP++GKGKKKA VNKDRFISKMF
Sbjct: 31 QVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPRSGKGKKKAKSVNKDRFISKMF 90
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 91 LRGDSVILVLRNP 103
>gi|134108164|ref|XP_777280.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259967|gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 65/72 (90%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRHCNMVLENV+EMWTE PK GKGKK PVNKDRFISKMF
Sbjct: 96 QVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK-GKGKK---PVNKDRFISKMF 151
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 152 LRGDSVILVLRN 163
>gi|58263220|ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|321249059|ref|XP_003191330.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|57223670|gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457797|gb|ADV19543.1| Pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118541|gb|AFR93315.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 111
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 65/72 (90%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRHCNMVLENV+EMWTE PK GKGKK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK-GKGKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 98 LRGDSVILVLRN 109
>gi|406866515|gb|EKD19555.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 106
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PKT G KK PVNKDRFISKMF
Sbjct: 36 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPKTS-GGKKGRPVNKDRFISKMF 94
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 95 LRGDSVILVL 104
>gi|430813655|emb|CCJ29007.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 1/72 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRH NMVLENV+EMWTE P+ KG KK PVNKDRFISKMF
Sbjct: 42 QVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPRNSKG-KKGKPVNKDRFISKMF 100
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 101 LRGDSVILVLRN 112
>gi|156361110|ref|XP_001625363.1| predicted protein [Nematostella vectensis]
gi|156212193|gb|EDO33263.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK+GKGKKKA PVNKDR+I+KMF
Sbjct: 42 QVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKAKPVNKDRYIAKMF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+ GKGKKKA PVNKDRFISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRPGKGKKKAKPVNKDRFISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGD+VI+++RNP
Sbjct: 100 LRGDAVIMIVRNP 112
>gi|91090234|ref|XP_968776.1| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]
gi|270013456|gb|EFA09904.1| hypothetical protein TcasGA2_TC012054 [Tribolium castaneum]
Length = 118
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCN+VLENV+EMWTELP+ GKGKKKA PVNKDRFISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNIVLENVKEMWTELPRPGKGKKKAKPVNKDRFISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGD+VIIV+RNP
Sbjct: 100 LRGDAVIIVVRNP 112
>gi|198434899|ref|XP_002127683.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 119
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK+GKGKKK PVN+DRFISKMF
Sbjct: 41 QVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKQQPVNRDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVL+NP
Sbjct: 101 LRGDSVIIVLKNP 113
>gi|112143936|gb|ABI13177.1| putative small nuclear ribonucleoprotein d2 [Emiliania huxleyi]
Length = 110
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 71/74 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK GKG KKA PVNKDRFISKMF
Sbjct: 37 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKKGKGVKKAKPVNKDRFISKMF 96
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 97 LRGDSVIIVLRNPK 110
>gi|256085048|ref|XP_002578736.1| small nuclear ribonucleoprotein Sm D2 [Schistosoma mansoni]
gi|360045476|emb|CCD83024.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
mansoni]
Length = 124
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFISK+F
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 63/73 (86%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QV INCRNN+KLL RV+AFDRH NM+LE+VRE WTE + GKGK K+ PVNKDRFISK+F
Sbjct: 40 QVFINCRNNRKLLARVKAFDRHFNMILEDVREFWTEGTRAGKGKTKSKPVNKDRFISKLF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVII+L NP
Sbjct: 100 LRGDSVIIILPNP 112
>gi|195061660|ref|XP_001996040.1| GH14279 [Drosophila grimshawi]
gi|193891832|gb|EDV90698.1| GH14279 [Drosophila grimshawi]
Length = 128
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 49 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 108
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 109 LRGDSVILVLRNP 121
>gi|225711330|gb|ACO11511.1| Probable small nuclear ribonucleoprotein Sm D2 [Caligus
rogercresseyi]
Length = 115
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKK LGRV+AFDRHCNMVLE+V+EMWTE+PKTGKGKKKA PVNKDR+ISKMF
Sbjct: 40 QVLINCRNNKKPLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDS+I+VLRNP
Sbjct: 100 LRGDSIILVLRNP 112
>gi|226470754|emb|CAX76810.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470756|emb|CAX76811.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470758|emb|CAX76812.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470760|emb|CAX76813.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470762|emb|CAX76814.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470764|emb|CAX76815.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470766|emb|CAX76816.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470768|emb|CAX76817.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473196|emb|CAX71284.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473198|emb|CAX71285.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473200|emb|CAX71286.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473202|emb|CAX71287.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 124
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFISK+F
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|444732316|gb|ELW72617.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 199
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 69/73 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGR +AFDRHCNM LENV+EMWTE+PK+GKGKKK PVNKDR+ISKMF
Sbjct: 32 QVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKGKKKFKPVNKDRYISKMF 91
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 92 LRGDSVIVVLQNP 104
>gi|195144664|ref|XP_002013316.1| GL23477 [Drosophila persimilis]
gi|194102259|gb|EDW24302.1| GL23477 [Drosophila persimilis]
Length = 124
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 45 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 104
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 105 LRGDSVILVLRNP 117
>gi|328765680|gb|EGF75829.1| hypothetical protein BATDEDRAFT_15195 [Batrachochytrium
dendrobatidis JAM81]
Length = 74
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+ CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDRFISKMF
Sbjct: 7 QVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDRFISKMF 66
Query: 91 LRGDSVI 97
LRGDS I
Sbjct: 67 LRGDSGI 73
>gi|21357623|ref|NP_649645.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|195109364|ref|XP_001999257.1| GI23171 [Drosophila mojavensis]
gi|195343951|ref|XP_002038554.1| GM10560 [Drosophila sechellia]
gi|195568713|ref|XP_002102358.1| GD19551 [Drosophila simulans]
gi|390178314|ref|XP_001358903.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
gi|33112452|sp|Q9VI10.1|SMD2_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|7298930|gb|AAF54135.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|17861966|gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gi|193915851|gb|EDW14718.1| GI23171 [Drosophila mojavensis]
gi|194133575|gb|EDW55091.1| GM10560 [Drosophila sechellia]
gi|194198285|gb|EDX11861.1| GD19551 [Drosophila simulans]
gi|220952896|gb|ACL88991.1| snRNP2-PA [synthetic construct]
gi|388859402|gb|EAL28046.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
Length = 119
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 100 LRGDSVILVLRNP 112
>gi|195453024|ref|XP_002073604.1| GK14204 [Drosophila willistoni]
gi|194169689|gb|EDW84590.1| GK14204 [Drosophila willistoni]
Length = 120
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVILVLRNP 113
>gi|195502267|ref|XP_002098148.1| GE24106 [Drosophila yakuba]
gi|194184249|gb|EDW97860.1| GE24106 [Drosophila yakuba]
Length = 123
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 44 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 103
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 104 LRGDSVILVLRNP 116
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 72/74 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK PVNKDRFISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKGKKKVKPVNKDRFISKMF 99
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNP+
Sbjct: 100 LRGDSVILVLRNPQ 113
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMF
Sbjct: 36 QVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMF 95
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 96 LRGDSVILVLKNP 108
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLLGRV+AFDRHCNMVLENV+EMW+E P+T GKK + VNKDRFISKMF
Sbjct: 51 QVLISCRNNRKLLGRVKAFDRHCNMVLENVKEMWSETPRTSDGKKGRV-VNKDRFISKMF 109
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 110 LRGDSVILVL 119
>gi|358342021|dbj|GAA49579.1| small nuclear ribonucleoprotein D2 [Clonorchis sinensis]
Length = 124
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDR+ISK+F
Sbjct: 43 QVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRYISKLF 102
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 103 LRGDSVILVLRNP 115
>gi|194899029|ref|XP_001979065.1| GG10522 [Drosophila erecta]
gi|190650768|gb|EDV48023.1| GG10522 [Drosophila erecta]
Length = 121
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 42 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 101
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 102 LRGDSVILVLRNP 114
>gi|328867188|gb|EGG15571.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 110
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LIN RNNKKLL RVRAFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 35 QILINVRNNKKLLARVRAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMF 94
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 95 LRGDSVILVLKNP 107
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMF
Sbjct: 32 QVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMF 91
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 92 LRGDSVILVLKNP 104
>gi|348676937|gb|EGZ16754.1| hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae]
Length = 123
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNN KLL RV+AFDRHCNMVLENV+EMWTE+PK+GKGKK A PVNKDRF+SKMF
Sbjct: 49 QVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKAAKPVNKDRFVSKMF 108
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVLRNP
Sbjct: 109 LRGDSVIIVLRNP 121
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 72/74 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK PVNKDRFISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKVKPVNKDRFISKMF 99
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNP+
Sbjct: 100 LRGDSVILVLRNPQ 113
>gi|195399858|ref|XP_002058536.1| GJ14487 [Drosophila virilis]
gi|194142096|gb|EDW58504.1| GJ14487 [Drosophila virilis]
Length = 125
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 46 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 105
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 106 LRGDSVILVLRNP 118
>gi|237832903|ref|XP_002365749.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|401408795|ref|XP_003883846.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
gi|211963413|gb|EEA98608.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|221488207|gb|EEE26421.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
GT1]
gi|221508720|gb|EEE34289.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
VEG]
gi|325118263|emb|CBZ53814.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
Length = 104
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 66/74 (89%), Gaps = 1/74 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+LGRV+AFDRHCN+VL +VREMWTE K G GKKK VNKDRFISK+F
Sbjct: 32 QVLINCRNNRKVLGRVKAFDRHCNLVLTDVREMWTETSKGG-GKKKVRTVNKDRFISKLF 90
Query: 91 LRGDSVIIVLRNPK 104
LRGD+VI++LRNPK
Sbjct: 91 LRGDAVILILRNPK 104
>gi|444732321|gb|ELW72622.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 170
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 68/73 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGR +AFDRHCNM LENV+EMWTE+PK+GKGKKK PVNKDR+ISK F
Sbjct: 32 QVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKGKKKFKPVNKDRYISKKF 91
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 92 LRGDSVIVVLQNP 104
>gi|395334237|gb|EJF66613.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 111
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTELPK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTELPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 98 LRGDSVILVLRN 109
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 65/72 (90%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LI+ RNN+KLL RV+AFDRH NMVLENV+EMWTE+PK GKGKK PVNKDRFISKMF
Sbjct: 42 QILISLRNNRKLLARVKAFDRHTNMVLENVKEMWTEVPK-GKGKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 98 LRGDSVILVLRN 109
>gi|440635668|gb|ELR05587.1| small nuclear ribonucleoprotein D2 [Geomyces destructans 20631-21]
Length = 118
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 48 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLA-GGKKGRPVNKDRFISKMF 106
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 107 LRGDSVILVL 116
>gi|452985934|gb|EME85690.1| hypothetical protein MYCFIDRAFT_82569 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE+P+ G KK PVNKDRFISKMF
Sbjct: 52 QVLISCRNNRKLLCRVKAFDRHCNMVLENVKEMWTEIPRLADG-KKGRPVNKDRFISKMF 110
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 111 LRGDSVILVL 120
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/74 (93%), Positives = 72/74 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK GKGKKKA PVNKDRFISKMF
Sbjct: 26 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKAGKGKKKAKPVNKDRFISKMF 85
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIVLRNPK
Sbjct: 86 LRGDSVIIVLRNPK 99
>gi|398391274|ref|XP_003849097.1| small nuclear ribonucleoprotein Sm D2 [Zymoseptoria tritici IPO323]
gi|339468973|gb|EGP84073.1| hypothetical protein MYCGRDRAFT_101457 [Zymoseptoria tritici
IPO323]
Length = 122
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+K+L RV+AFDRHCNMVLENV+EMWTE+P+ G KK PVNKDRFISKMF
Sbjct: 52 QVLISCRNNRKMLARVKAFDRHCNMVLENVKEMWTEVPRLTDG-KKGRPVNKDRFISKMF 110
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 111 LRGDSVILVL 120
>gi|388857230|emb|CCF49243.1| probable small nuclear ribonucleoprotein chain D2 [Ustilago hordei]
Length = 111
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LI RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GKGKK PVNKDRFISKMF
Sbjct: 42 QILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKGKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSV++VLRN
Sbjct: 98 LRGDSVVLVLRN 109
>gi|71021395|ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|46101003|gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|343426204|emb|CBQ69735.1| probable small nuclear ribonucleoprotein chain D2 [Sporisorium
reilianum SRZ2]
gi|443900125|dbj|GAC77452.1| 17 beta-hydroxysteroid dehydrogenase type 3 [Pseudozyma antarctica
T-34]
Length = 111
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LI RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GKGKK PVNKDRFISKMF
Sbjct: 42 QILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKGKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSV++VLRN
Sbjct: 98 LRGDSVVLVLRN 109
>gi|409083385|gb|EKM83742.1| hypothetical protein AGABI1DRAFT_124072 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 111
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEIPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 98 LRGDSVILVLRN 109
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ PVNKD +ISK+F
Sbjct: 41 QVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKSKPVNKDCYISKIF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 71/74 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK PVNKDRFISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRAGKGKKKVKPVNKDRFISKMF 99
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNP+
Sbjct: 100 LRGDSVILVLRNPQ 113
>gi|63501063|ref|XP_619909.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ PVNKD +ISK+F
Sbjct: 41 QVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKSKPVNKDCYISKIF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|449302285|gb|EMC98294.1| hypothetical protein BAUCODRAFT_146847 [Baudoinia compniacensis
UAMH 10762]
Length = 119
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G K+ PVNKDRFISKMF
Sbjct: 49 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLTDG-KRGRPVNKDRFISKMF 107
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 108 LRGDSVILVL 117
>gi|407927523|gb|EKG20414.1| hypothetical protein MPH_02260 [Macrophomina phaseolina MS6]
Length = 118
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK G K PVNKDRFISKMF
Sbjct: 48 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKLANG-KPGRPVNKDRFISKMF 106
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 107 LRGDSVILVL 116
>gi|389739270|gb|EIM80464.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 111
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEIPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI++LRN
Sbjct: 98 LRGDSVILILRN 109
>gi|242221237|ref|XP_002476371.1| predicted protein [Postia placenta Mad-698-R]
gi|220724376|gb|EED78423.1| predicted protein [Postia placenta Mad-698-R]
Length = 111
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI++LRN
Sbjct: 98 LRGDSVILILRN 109
>gi|345568451|gb|EGX51345.1| hypothetical protein AOL_s00054g415 [Arthrobotrys oligospora ATCC
24927]
Length = 112
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRH NMVLENV+EMWTE P+ +G KK PVNKDRFISKMF
Sbjct: 42 QVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPRNAQG-KKGRPVNKDRFISKMF 100
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 101 LRGDSVILVL 110
>gi|167516090|ref|XP_001742386.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779010|gb|EDQ92624.1| predicted protein [Monosiga brevicollis MX1]
Length = 123
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 66/73 (90%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI CRNNKKLL RV+AFDRHCNMVLE V+EMWTE PK GKG+KK P+NKDRFISKMF
Sbjct: 46 QVLIFCRNNKKLLARVKAFDRHCNMVLEQVKEMWTETPKAGKGQKKKKPINKDRFISKMF 105
Query: 91 LRGDSVIIVLRNP 103
LRGD+VI+VLRNP
Sbjct: 106 LRGDTVILVLRNP 118
>gi|170084079|ref|XP_001873263.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650815|gb|EDR15055.1| predicted protein [Laccaria bicolor S238N-H82]
gi|336377064|gb|EGO05399.1| hypothetical protein SERLA73DRAFT_174539 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390107|gb|EGO31250.1| hypothetical protein SERLADRAFT_456135 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI++LRN
Sbjct: 98 LRGDSVILILRN 109
>gi|452846138|gb|EME48071.1| hypothetical protein DOTSEDRAFT_21783 [Dothistroma septosporum
NZE10]
Length = 121
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE+P+ G KK VNKDRFISKMF
Sbjct: 51 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEIPRLADG-KKGRAVNKDRFISKMF 109
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 110 LRGDSVILVL 119
>gi|119478615|ref|XP_001259398.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
gi|121713894|ref|XP_001274558.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119402711|gb|EAW13132.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119407552|gb|EAW17501.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
Length = 115
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMF
Sbjct: 48 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMF 103
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 104 LRGDSVILVL 113
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 68/72 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ PVNKDR+ISKMF
Sbjct: 42 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKSKPVNKDRYISKMF 101
Query: 91 LRGDSVIIVLRN 102
L G SVI+VL+N
Sbjct: 102 LCGGSVIVVLQN 113
>gi|393247820|gb|EJD55327.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 111
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSV++VLRN
Sbjct: 98 LRGDSVVLVLRN 109
>gi|392597247|gb|EIW86569.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 111
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI++LRN
Sbjct: 98 LRGDSVILILRN 109
>gi|242762206|ref|XP_002340329.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723525|gb|EED22942.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 114
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|70997219|ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspergillus fumigatus Af293]
gi|66850998|gb|EAL91324.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus Af293]
gi|159126913|gb|EDP52029.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus A1163]
Length = 122
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMF
Sbjct: 55 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMF 110
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 111 LRGDSVILVL 120
>gi|156058484|ref|XP_001595165.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980]
gi|154701041|gb|EDO00780.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980
UF-70]
gi|347839440|emb|CCD54012.1| similar to small nuclear ribonucleoprotein sm d2 [Botryotinia
fuckeliana]
Length = 118
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 64/71 (90%), Gaps = 3/71 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK-TGKGKKKALPVNKDRFISKM 89
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ +G GK + PVNKDRFISKM
Sbjct: 48 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLSGGGKGR--PVNKDRFISKM 105
Query: 90 FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 106 FLRGDSVILVL 116
>gi|212529806|ref|XP_002145060.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074458|gb|EEA28545.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|425772328|gb|EKV10736.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum Pd1]
gi|425777592|gb|EKV15755.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum PHI26]
Length = 117
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK KGK VNKDRFISKMF
Sbjct: 50 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGAKGKG----VNKDRFISKMF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|325183558|emb|CCA18019.1| hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]
Length = 110
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNN KLL RV+AFDRHCNMVLENV+EMWTE+PK+GKGKK PVNKDRF+SK+F
Sbjct: 36 QVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKSGKPVNKDRFVSKLF 95
Query: 91 LRGDSVIIVLRNP 103
LRGDSV++VLRNP
Sbjct: 96 LRGDSVVLVLRNP 108
>gi|317034834|ref|XP_001401271.2| small nuclear ribonucleoprotein Sm D2 [Aspergillus niger CBS
513.88]
gi|350639668|gb|EHA28022.1| hypothetical protein ASPNIDRAFT_41962 [Aspergillus niger ATCC 1015]
gi|358374829|dbj|GAA91418.1| small nuclear ribonucleoprotein SmD2 [Aspergillus kawachii IFO
4308]
Length = 115
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK G GK VNKDRFISKMF
Sbjct: 48 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGNGKG----VNKDRFISKMF 103
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 104 LRGDSVILVL 113
>gi|229366980|gb|ACQ58470.1| Small nuclear ribonucleoprotein Sm D2 [Anoplopoma fimbria]
Length = 118
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVLRNP
Sbjct: 101 LRGDSVIIVLRNP 113
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI RNN+KLLGRV+AFDRH NM+LENV EMWTE+PK KG KKA NK+RFI KMF
Sbjct: 31 QVLIELRNNRKLLGRVKAFDRHMNMILENVTEMWTEIPKGNKG-KKAHATNKERFIPKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI +LRNPK
Sbjct: 90 LRGDSVIYILRNPK 103
>gi|224010008|ref|XP_002293962.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970634|gb|EED88971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 108
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 63/73 (86%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+N RNN KLLGRV+A+DRH N++LE+V+EMWTE K GKG+K+ +NKDR++SKMF
Sbjct: 27 QVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEYSKGGKGRKRGTSINKDRYVSKMF 86
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V+ NP
Sbjct: 87 LRGDSVILVVSNP 99
>gi|342880846|gb|EGU81864.1| hypothetical protein FOXB_07659 [Fusarium oxysporum Fo5176]
Length = 118
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 47 VQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKM 105
Query: 90 FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 106 FLRGDSVILVL 116
>gi|302909473|ref|XP_003050081.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731018|gb|EEU44368.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 117
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 46 IQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKM 104
Query: 90 FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 105 FLRGDSVILVL 115
>gi|390604110|gb|EIN13501.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 111
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLR+
Sbjct: 98 LRGDSVILVLRH 109
>gi|354486715|ref|XP_003505524.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cricetulus
griseus]
Length = 139
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 67/72 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ P+NK +ISKMF
Sbjct: 62 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKGKKKSKPINKGHYISKMF 121
Query: 91 LRGDSVIIVLRN 102
L GDSVI+VLRN
Sbjct: 122 LSGDSVIVVLRN 133
>gi|310794394|gb|EFQ29855.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 118
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 48 QVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMF 106
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 107 LRGDSVILVL 116
>gi|389644410|ref|XP_003719837.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|351639606|gb|EHA47470.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|440470057|gb|ELQ39146.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae Y34]
gi|440490054|gb|ELQ69649.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae P131]
Length = 117
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 47 QVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLASG-KKGRPVNKDRFISKMF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|237858781|ref|NP_001153822.1| small nuclear ribonucleoprotein D2-like [Acyrthosiphon pisum]
gi|193606141|ref|XP_001943704.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Acyrthosiphon pisum]
gi|54287930|gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
gi|239790582|dbj|BAH71844.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790584|dbj|BAH71845.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790586|dbj|BAH71846.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790588|dbj|BAH71847.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790590|dbj|BAH71848.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 71/74 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL R++AFDRHCNMVLENVREMWTELPKTGKGKKKA V++D++ISKMF
Sbjct: 42 QVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKAKAVSRDKYISKMF 101
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+V++NPK
Sbjct: 102 LRGDSVILVVKNPK 115
>gi|410909734|ref|XP_003968345.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Takifugu
rubripes]
Length = 124
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 47 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 106
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVLRNP
Sbjct: 107 LRGDSVIIVLRNP 119
>gi|380476129|emb|CCF44882.1| small nuclear ribonucleoprotein Sm D2 [Colletotrichum higginsianum]
Length = 118
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 48 QVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMF 106
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 107 LRGDSVILVL 116
>gi|134081955|emb|CAK97221.1| unnamed protein product [Aspergillus niger]
Length = 117
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK G GK VNKDRFISKMF
Sbjct: 50 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGNGKG----VNKDRFISKMF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|115387341|ref|XP_001211176.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
gi|114195260|gb|EAU36960.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
Length = 115
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK KGK VNKDRFISKMF
Sbjct: 48 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGSKGKG----VNKDRFISKMF 103
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 104 LRGDSVILVL 113
>gi|255954305|ref|XP_002567905.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589616|emb|CAP95763.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK KGK VNKDRFISKMF
Sbjct: 56 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGAKGKG----VNKDRFISKMF 111
Query: 91 LRGDSVIIVL 100
LRGDSVI++L
Sbjct: 112 LRGDSVILIL 121
>gi|402078814|gb|EJT74079.1| small nuclear ribonucleoprotein Sm D2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 117
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 47 QVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|226470770|emb|CAX76818.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 87
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 69/72 (95%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFISK+FL
Sbjct: 6 VLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFL 65
Query: 92 RGDSVIIVLRNP 103
RGDSVI+VLRNP
Sbjct: 66 RGDSVILVLRNP 77
>gi|400600870|gb|EJP68538.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 118
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 47 VQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKM 105
Query: 90 FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 106 FLRGDSVILVL 116
>gi|444730749|gb|ELW71123.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 149
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 72 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 131
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 132 LRGDSVIVVLRNP 144
>gi|432893287|ref|XP_004075904.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oryzias
latipes]
Length = 118
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|429861913|gb|ELA36576.1| small nuclear ribonucleoprotein sm d2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 118
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 48 QVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMF 106
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 107 LRGDSVILVL 116
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 63 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 122
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 123 LRGDSVIVVLRNP 135
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 63/72 (87%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LI+ RNN+KLL RV+AFDRH NMVLENV+EMWTE P +GK KK PVNKDRFISKMF
Sbjct: 53 QILISLRNNRKLLARVKAFDRHSNMVLENVKEMWTETP-SGKNKK---PVNKDRFISKMF 108
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 109 LRGDSVILVLRN 120
>gi|380800505|gb|AFE72128.1| small nuclear ribonucleoprotein Sm D2 isoform 1, partial [Macaca
mulatta]
Length = 89
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 12 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 71
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 72 LRGDSVIVVLRNP 84
>gi|408397992|gb|EKJ77129.1| hypothetical protein FPSE_02773 [Fusarium pseudograminearum CS3096]
Length = 117
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 46 VQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLA-GGKKGRPVNKDRFISKM 104
Query: 90 FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 105 FLRGDSVILVL 115
>gi|225715792|gb|ACO13742.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|46125281|ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 84 VQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLA-GGKKGRPVNKDRFISKM 142
Query: 90 FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 143 FLRGDSVILVL 153
>gi|348508217|ref|XP_003441651.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oreochromis
niloticus]
Length = 118
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|345315929|ref|XP_001520002.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Ornithorhynchus anatinus]
Length = 123
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 46 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 105
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 106 LRGDSVIVVLRNP 118
>gi|62955141|ref|NP_001017582.1| small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gi|62204867|gb|AAH93003.1| Si:dkey-113g17.2 [Danio rerio]
gi|169145930|emb|CAQ13816.1| novel protein similar to vertebrate small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa (SNRPD2) [Danio rerio]
gi|225706716|gb|ACO09204.1| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]
Length = 118
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|291290931|ref|NP_001167498.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
laevis]
gi|57032687|gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]
gi|58037145|ref|NP_081219.1| small nuclear ribonucleoprotein Sm D2 [Mus musculus]
gi|77735903|ref|NP_001029648.1| small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein Sm D2 [Rattus norvegicus]
gi|302191671|ref|NP_001180521.1| small nuclear ribonucleoprotein Sm D2 [Macaca mulatta]
gi|318085119|ref|NP_001187657.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|343887362|ref|NP_001230582.1| small nuclear ribonucleoprotein Sm D2 [Sus scrofa]
gi|356991224|ref|NP_001239341.1| small nuclear ribonucleoprotein Sm D2 [Canis lupus familiaris]
gi|149722210|ref|XP_001502799.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Equus
caballus]
gi|291414848|ref|XP_002723659.1| PREDICTED: small nuclear ribonucleoprotein D2 [Oryctolagus
cuniculus]
gi|296234130|ref|XP_002762293.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|297705196|ref|XP_002829469.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pongo abelii]
gi|301786280|ref|XP_002928550.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
gi|327286749|ref|XP_003228092.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Anolis
carolinensis]
gi|334328787|ref|XP_001365173.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Monodelphis
domestica]
gi|344269659|ref|XP_003406666.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Loxodonta
africana]
gi|348557650|ref|XP_003464632.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
gi|390465430|ref|XP_003733405.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|397493317|ref|XP_003817554.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Pan
paniscus]
gi|397493319|ref|XP_003817555.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Pan
paniscus]
gi|397493321|ref|XP_003817556.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Pan
paniscus]
gi|397493323|ref|XP_003817557.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
paniscus]
gi|397493325|ref|XP_003817558.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Pan
paniscus]
gi|402905973|ref|XP_003915782.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Papio
anubis]
gi|403267451|ref|XP_003925846.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
gi|403299046|ref|XP_003940303.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Saimiri
boliviensis boliviensis]
gi|410054097|ref|XP_003953576.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982696|ref|XP_003997684.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Felis
catus]
gi|426243035|ref|XP_004015372.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Ovis aries]
gi|426389216|ref|XP_004061020.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Gorilla
gorilla gorilla]
gi|426389218|ref|XP_004061021.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Gorilla
gorilla gorilla]
gi|426389220|ref|XP_004061022.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Gorilla
gorilla gorilla]
gi|441655899|ref|XP_004091080.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655902|ref|XP_004091081.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655911|ref|XP_004091083.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|51338666|sp|P62316.1|SMD2_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|59800293|sp|P62317.1|SMD2_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|109894870|sp|Q3SZF8.1|SMD2_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|6980599|pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734043|pdb|3CW1|C Chain C, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734052|pdb|3CW1|P Chain P, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734061|pdb|3CW1|Q Chain Q, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734070|pdb|3CW1|R Chain R, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583603|pdb|3PGW|Y Chain Y, Crystal Structure Of Human U1 Snrnp
gi|315583612|pdb|3PGW|V Chain V, Crystal Structure Of Human U1 Snrnp
gi|332639435|pdb|2Y9A|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639442|pdb|2Y9A|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639449|pdb|2Y9A|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639459|pdb|2Y9B|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639466|pdb|2Y9B|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639473|pdb|2Y9B|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639483|pdb|2Y9C|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639490|pdb|2Y9C|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639497|pdb|2Y9C|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639507|pdb|2Y9D|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639514|pdb|2Y9D|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639521|pdb|2Y9D|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781211|pdb|3S6N|B Chain B, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302197|pdb|4F7U|B Chain B, Macromolecular Machine 6
gi|444302199|pdb|4F7U|D Chain D, Macromolecular Machine 6
gi|453055423|pdb|1VU2|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055431|pdb|1VU2|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055439|pdb|1VU2|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055447|pdb|1VU2|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055455|pdb|1VU2|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055463|pdb|1VU2|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453055475|pdb|1VU2|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|453055479|pdb|1VU3|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055487|pdb|1VU3|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055495|pdb|1VU3|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055503|pdb|1VU3|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055511|pdb|1VU3|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055519|pdb|1VU3|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056011|pdb|4F77|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453056019|pdb|4F77|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453056027|pdb|4F77|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453056035|pdb|4F77|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453056043|pdb|4F77|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453056051|pdb|4F77|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056063|pdb|4F77|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN [Homo sapiens]
gi|600748|gb|AAC13776.1| Sm D2 [Homo sapiens]
gi|12653431|gb|AAH00486.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12804955|gb|AAH01930.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus musculus]
gi|26353034|dbj|BAC40147.1| unnamed protein product [Mus musculus]
gi|27696661|gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|30109280|gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|74354236|gb|AAI02878.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Bos taurus]
gi|109734134|gb|AAI16859.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|109734137|gb|AAI16861.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|119577777|gb|EAW57373.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_a [Homo sapiens]
gi|123980686|gb|ABM82172.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|123995513|gb|ABM85358.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|148691165|gb|EDL23112.1| mCG4862 [Mus musculus]
gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus]
gi|158257256|dbj|BAF84601.1| unnamed protein product [Homo sapiens]
gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus]
gi|208967434|dbj|BAG73731.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
gi|296477468|tpg|DAA19583.1| TPA: small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|308323619|gb|ADO28945.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|383412347|gb|AFH29387.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|387018126|gb|AFJ51181.1| Small nuclear ribonucleoprotein Sm D2 [Crotalus adamanteus]
gi|387542088|gb|AFJ71671.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|410291960|gb|JAA24580.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
gi|410332637|gb|JAA35265.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
Length = 118
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|431909174|gb|ELK12764.1| Small nuclear ribonucleoprotein Sm D2 [Pteropus alecto]
Length = 138
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 61 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 120
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 121 LRGDSVIVVLRNP 133
>gi|52346166|ref|NP_001005128.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|50417589|gb|AAH77664.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
gi|89272067|emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|170285025|gb|AAI61312.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
Length = 118
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|344249248|gb|EGW05352.1| Small nuclear ribonucleoprotein Sm D2 [Cricetulus griseus]
Length = 108
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 67/72 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ P+NK +ISKMF
Sbjct: 31 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKGKKKSKPINKGHYISKMF 90
Query: 91 LRGDSVIIVLRN 102
L GDSVI+VLRN
Sbjct: 91 LSGDSVIVVLRN 102
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|60834798|gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|213405485|ref|XP_002173514.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
gi|212001561|gb|EEB07221.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE KT G KK P+N+DRFISKMF
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTERRKTSSG-KKGKPINRDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGD V++V+R P
Sbjct: 101 LRGDGVVLVVRIP 113
>gi|392571577|gb|EIW64749.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 111
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK GK KK VNKDRFISKMF
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK-GKNKK---AVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 98 LRGDSVILVLRN 109
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 64/72 (88%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+L++ RNN+KLL RV+AFDRH NMVLENV+EMWTE PK GKGK+ P+NKDRFISKMF
Sbjct: 42 QILVSLRNNRKLLARVKAFDRHSNMVLENVKEMWTETPK-GKGKQ---PINKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 98 LRGDSVILVLRN 109
>gi|281348790|gb|EFB24374.1| hypothetical protein PANDA_018526 [Ailuropoda melanoleuca]
gi|355703667|gb|EHH30158.1| hypothetical protein EGK_10765, partial [Macaca mulatta]
gi|440902304|gb|ELR53111.1| Small nuclear ribonucleoprotein Sm D2, partial [Bos grunniens
mutus]
Length = 117
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 100 LRGDSVIVVLRNP 112
>gi|109085944|ref|XP_001108236.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|323456239|gb|EGB12106.1| hypothetical protein AURANDRAFT_20164 [Aureococcus anophagefferens]
Length = 104
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNN KLL RV+AFDRHCNMVLENV+E+WTE+PKTGKGKKK+ PVNK+R+ISKMF
Sbjct: 29 QVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMF 88
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 89 LRGDSVILVLRNP 101
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|237649049|ref|NP_808210.2| small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
gi|332257074|ref|XP_003277641.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4
[Nomascus leucogenys]
gi|332257076|ref|XP_003277642.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Nomascus leucogenys]
gi|332856260|ref|XP_001166252.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
troglodytes]
gi|395854166|ref|XP_003799569.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Otolemur
garnettii]
gi|397493327|ref|XP_003817559.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Pan
paniscus]
gi|402905975|ref|XP_003915783.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Papio
anubis]
gi|410054100|ref|XP_003953577.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982698|ref|XP_003997685.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Felis
catus]
gi|426389224|ref|XP_004061024.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Gorilla
gorilla gorilla]
gi|426389226|ref|XP_004061025.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Gorilla
gorilla gorilla]
gi|441655907|ref|XP_004091082.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|119577778|gb|EAW57374.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_b [Homo sapiens]
gi|351697916|gb|EHB00835.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
gi|432101631|gb|ELK29680.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 108
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 31 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 90
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 91 LRGDSVIVVLRNP 103
>gi|393218655|gb|EJD04143.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 112
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 63/72 (87%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMW E+PK GK KK PVNKDRFISKMF
Sbjct: 43 QVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWVEVPK-GKNKK---PVNKDRFISKMF 98
Query: 91 LRGDSVIIVLRN 102
LRGDSVI++LRN
Sbjct: 99 LRGDSVILILRN 110
>gi|340517487|gb|EGR47731.1| predicted protein [Trichoderma reesei QM6a]
gi|358388581|gb|EHK26174.1| hypothetical protein TRIVIDRAFT_35950 [Trichoderma virens Gv29-8]
Length = 117
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+N+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 47 QVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKMF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|239788764|dbj|BAH71046.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL R++AFDRHCNMVLENVREMWTELPKTGKGKKKA V++D++ISKMF
Sbjct: 42 QVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKAKAVSRDKYISKMF 101
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+V+ NPK
Sbjct: 102 LRGDSVILVVMNPK 115
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 31 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 90
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 91 LRGDSVIVVLRNP 103
>gi|426389222|ref|XP_004061023.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Gorilla
gorilla gorilla]
Length = 136
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 59 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 118
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 119 LRGDSVIVVLRNP 131
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR++SKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYVSKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|358392303|gb|EHK41707.1| hypothetical protein TRIATDRAFT_30322 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+N+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 47 QVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKMF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V++NP
Sbjct: 101 LRGDSVILVVKNP 113
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR++SKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYVSKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL RV+AFDRH NMVLENV+EMWTE PKTGKGKKKA PVNKDRFI+KMF
Sbjct: 40 QVLINCRNNRKLLARVKAFDRHFNMVLENVKEMWTETPKTGKGKKKARPVNKDRFIAKMF 99
Query: 91 LRGDSVIIVLRNP 103
+RGDSVI+VLRNP
Sbjct: 100 IRGDSVILVLRNP 112
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 69/74 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK+GKG+KK+ P+NK RF +K+F
Sbjct: 44 QILISCRNNRKLLARVKAFDRHCNMVLENVQEMWTEQPKSGKGRKKSKPINKTRFTNKLF 103
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 104 LRGDSVILVLRNPK 117
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 46 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 105
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 106 LRGDSVIVVLRNP 118
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V++NP
Sbjct: 101 LRGDSVILVVKNP 113
>gi|395529567|ref|XP_003766882.1| PREDICTED: uncharacterized protein LOC100930002 [Sarcophilus
harrisii]
Length = 242
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKD +ISKMF
Sbjct: 165 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDHYISKMF 224
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 225 LRGDSVIVVLRNP 237
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFI+KMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFITKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVIIVL+NP
Sbjct: 101 LRGDSVIIVLKNP 113
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V++NP
Sbjct: 101 LRGDSVILVVKNP 113
>gi|219113577|ref|XP_002186372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583222|gb|ACI65842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 122
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 62/73 (84%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNN KLL RV+A+DRH N++LE+V+EMWTE+ K GKG+ + VNKDR++SKMF
Sbjct: 35 QVLINVRNNHKLLARVKAYDRHMNLLLEDVKEMWTEVSKGGKGRTRGTAVNKDRYVSKMF 94
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V+ NP
Sbjct: 95 LRGDSVILVVSNP 107
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVN+DR+ISKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNRDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V++NP
Sbjct: 101 LRGDSVILVVKNP 113
>gi|19115418|ref|NP_594506.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe 972h-]
gi|12230558|sp|O14036.1|SMD2_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=Complexed with cdc5 protein 9; AltName:
Full=snRNP core protein D2
gi|2414614|emb|CAB16363.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe]
Length = 115
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISKMF
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGD V++V+R P
Sbjct: 101 LRGDGVVLVVRIP 113
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFI+KMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFITKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVII+L+NP
Sbjct: 101 LRGDSVIIILKNP 113
>gi|322703763|gb|EFY95367.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium anisopliae ARSEF
23]
Length = 121
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMW E P+ G KK PVNKDRFISKMF
Sbjct: 51 QVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWDETPRLADG-KKGRPVNKDRFISKMF 109
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 110 LRGDSVILVL 119
>gi|148692587|gb|EDL24534.1| mCG49049 [Mus musculus]
Length = 118
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGD VI+VLRNP
Sbjct: 101 LRGDLVIVVLRNP 113
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFI+KMF
Sbjct: 31 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFITKMF 90
Query: 91 LRGDSVIIVLRNP 103
LRGDSVII+L+NP
Sbjct: 91 LRGDSVIIILKNP 103
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AF RHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFGRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNK+LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLVNCRNNKELLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDS+I+VLRNP
Sbjct: 101 LRGDSIIVVLRNP 113
>gi|296204251|ref|XP_002749249.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGR +AFDRHCNMVLEN++EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRAKAFDRHCNMVLENMKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|296213417|ref|XP_002753261.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 71/72 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLRN
Sbjct: 101 LRGDSVIVVLRN 112
>gi|403288352|ref|XP_003935370.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403288354|ref|XP_003935371.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 145
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AF+RHCNMVLENV+E WTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFNRHCNMVLENVKETWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR++SKMF
Sbjct: 41 QVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYVSKMF 100
Query: 91 LRGDSVIIVLRNP 103
RGDSVI+VLRNP
Sbjct: 101 QRGDSVIVVLRNP 113
>gi|340959200|gb|EGS20381.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 592
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+ +KLL RV+AFDRHCNM+LENV+EMWTE P T KK PVNKDRFISKMF
Sbjct: 523 QVLISVRSGRKLLARVKAFDRHCNMILENVKEMWTETPVT--NGKKGRPVNKDRFISKMF 580
Query: 91 LRGDSVIIVL 100
LRGDSV+IVL
Sbjct: 581 LRGDSVVIVL 590
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+E+WTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRG+SVI+VLRNP
Sbjct: 101 LRGNSVIVVLRNP 113
>gi|109131908|ref|XP_001099573.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LR DSVI+VLRNP
Sbjct: 101 LRRDSVIVVLRNP 113
>gi|399217363|emb|CCF74250.1| unnamed protein product [Babesia microti strain RI]
Length = 103
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 64/74 (86%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+L RV+AFDRHCNM+L + REMWT + +G GK+K VNKDRFISKMF
Sbjct: 33 QVLINCRNNRKILARVKAFDRHCNMILVDAREMWT-VKSSGGGKQKF--VNKDRFISKMF 89
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VLRNPK
Sbjct: 90 LRGDSVIVVLRNPK 103
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 62/72 (86%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+LI RNN+KLL RV+AFDRH NMVL NV+EMWTELPK GK KK PVNKDRFISKMF
Sbjct: 42 QILIALRNNRKLLARVKAFDRHSNMVLVNVKEMWTELPK-GKNKK---PVNKDRFISKMF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLR+
Sbjct: 98 LRGDSVILVLRH 109
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QV+INCRNN+KLLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFISKMF
Sbjct: 41 QVMINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 101 LRGDSVILVLKNP 113
>gi|351699571|gb|EHB02490.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
Length = 91
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINC +NKKLLG +AFDR CNMVLEN++EMWTE+PK G+GKKK PV KD +ISK+F
Sbjct: 15 QVLINC-HNKKLLGCAKAFDRDCNMVLENMKEMWTEVPKRGQGKKKFKPVRKDHYISKIF 73
Query: 91 LRGDSVIIVLRNP 103
L GDSVI+VL+NP
Sbjct: 74 LHGDSVIMVLQNP 86
>gi|346975454|gb|EGY18906.1| small nuclear ribonucleoprotein Sm D2 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 61/75 (81%), Gaps = 6/75 (8%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENV-----REMWTELPKTGKGKKKALPVNKDRF 85
QVLI+ RNN+KLL RV+AFDRHCNMVLENV +EMWTE P+ G KK PVNKDRF
Sbjct: 47 QVLISIRNNRKLLARVKAFDRHCNMVLENVVRTRLKEMWTETPRNADG-KKGRPVNKDRF 105
Query: 86 ISKMFLRGDSVIIVL 100
ISKMFLRGDSVI+VL
Sbjct: 106 ISKMFLRGDSVILVL 120
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 64/73 (87%), Gaps = 4/73 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLIN RN+KKLLG+V+AFDRH NM+LENV+E+WTE+PK+ KKA PVNKDRFI KMFL
Sbjct: 51 VLINVRNSKKLLGKVKAFDRHFNMILENVKEIWTEIPKS----KKARPVNKDRFIPKMFL 106
Query: 92 RGDSVIIVLRNPK 104
RGDSV++VL+ P+
Sbjct: 107 RGDSVVLVLKAPQ 119
>gi|355763191|gb|EHH62129.1| hypothetical protein EGM_20337, partial [Macaca fascicularis]
Length = 117
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKD +ISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDHYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LR DSVI+VLRNP
Sbjct: 100 LRRDSVIVVLRNP 112
>gi|380092270|emb|CCC10046.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 119
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 49 QVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG-KKGKPVNKDRFISKMF 107
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 108 LRGDSVILVL 117
>gi|336472988|gb|EGO61148.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2508]
gi|350293763|gb|EGZ74848.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2509]
Length = 119
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 49 QVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG-KKGKPVNKDRFISKMF 107
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 108 LRGDSVILVL 117
>gi|336274873|ref|XP_003352190.1| hypothetical protein SMAC_02625 [Sordaria macrospora k-hell]
Length = 108
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 38 QVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG-KKGKPVNKDRFISKMF 96
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 97 LRGDSVILVL 106
>gi|164426898|ref|XP_961124.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
gi|157071520|gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
Length = 119
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 49 QVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG-KKGKPVNKDRFISKMF 107
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 108 LRGDSVILVL 117
>gi|441600622|ref|XP_004087625.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Nomascus leucogenys]
gi|441600625|ref|XP_004087626.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Nomascus leucogenys]
Length = 118
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 67/73 (91%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCR++KKLLG V+AF+RHCNMVLEN++EMWTE+PK+ KGKKK+ PVNKD +ISKMF
Sbjct: 41 QVLINCRSSKKLLGHVKAFERHCNMVLENMKEMWTEVPKSSKGKKKSKPVNKDCYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
L GD VI+VLRNP
Sbjct: 101 LHGDLVIVVLRNP 113
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 64/74 (86%), Gaps = 2/74 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRH N++LENV+E+WT+ + + + K P NKDRFISK+F
Sbjct: 26 QVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTD--RNSQKESKTPPSNKDRFISKLF 83
Query: 91 LRGDSVIIVLRNPK 104
LRGDS+I+VL+NPK
Sbjct: 84 LRGDSIILVLKNPK 97
>gi|320590837|gb|EFX03280.1| small nuclear ribonucleoprotein sm d2 [Grosmannia clavigera kw1407]
Length = 116
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P T KK PVNKDRFISKMF
Sbjct: 47 QVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVT--NGKKGRPVNKDRFISKMF 104
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 105 LRGDSVILVL 114
>gi|109122268|ref|XP_001083377.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 70/72 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRN 102
LR DSV++VLRN
Sbjct: 101 LRQDSVVLVLRN 112
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKMF
Sbjct: 47 QVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV--HNGKKGRPVNKDRFISKMF 104
Query: 91 LRGDSVIIVL 100
LRGDSVIIVL
Sbjct: 105 LRGDSVIIVL 114
>gi|378726124|gb|EHY52583.1| small nuclear ribonucleoprotein Sm D2 [Exophiala dermatitidis
NIH/UT8656]
Length = 100
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 59/70 (84%), Gaps = 5/70 (7%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K K + VNKDRFISKMF
Sbjct: 34 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE-----KTKGNSKGVNKDRFISKMF 88
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 89 LRGDSVILVL 98
>gi|189208117|ref|XP_001940392.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330933723|ref|XP_003304270.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|187976485|gb|EDU43111.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311319198|gb|EFQ87625.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|451847200|gb|EMD60508.1| hypothetical protein COCSADRAFT_163837 [Cochliobolus sativus
ND90Pr]
gi|451997866|gb|EMD90331.1| hypothetical protein COCHEDRAFT_1157376 [Cochliobolus
heterostrophus C5]
Length = 117
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+K+L RV+AFDRHCNMVLEN +EMWTE P+ G VNKDRFISK+F
Sbjct: 47 QVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLANG-SYGRKVNKDRFISKLF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKMF
Sbjct: 47 QVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV--HNGKKGRPVNKDRFISKMF 104
Query: 91 LRGDSVIIVL 100
LRGDSVIIVL
Sbjct: 105 LRGDSVIIVL 114
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 64/74 (86%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCR+N+KLLGRV+AFDRH NM+L +VREMWTE+ G GKKK + NKDR+IS++F
Sbjct: 92 QVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEV-SGGGGKKKYM--NKDRYISRLF 148
Query: 91 LRGDSVIIVLRNPK 104
LRGDSV++VL NPK
Sbjct: 149 LRGDSVVVVLSNPK 162
>gi|392576339|gb|EIW69470.1| hypothetical protein TREMEDRAFT_30560, partial [Tremella
mesenterica DSM 1558]
Length = 117
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 62/72 (86%), Gaps = 5/72 (6%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE PK GKGKK +NKDRFISK+F
Sbjct: 41 QVLISLRNNKKLLARVKAFDRHANMVLENVKEMWTETPK-GKGKK---TINKDRFISKLF 96
Query: 91 LRGDSVII-VLR 101
LRGDSVI+ VLR
Sbjct: 97 LRGDSVILGVLR 108
>gi|396486327|ref|XP_003842389.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
gi|312218965|emb|CBX98910.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
Length = 117
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+K+L RV+AFDRHCNMVLEN +EMWTE P+ G VNKDRFISK+F
Sbjct: 47 QVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLSNG-SMGRKVNKDRFISKLF 105
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 106 LRGDSVILVL 115
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 61/72 (84%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+L+ RN KLL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISK+F
Sbjct: 42 QILVALRNGHKLLARVKAFDRHSNMVLENVKEMWTEIPK-GKNKK---PVNKDRFISKLF 97
Query: 91 LRGDSVIIVLRN 102
LRGDSVI+VLR+
Sbjct: 98 LRGDSVIMVLRS 109
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKMF
Sbjct: 47 QVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV--HNGKKGRPVNKDRFISKMF 104
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 105 LRGDSVILVL 114
>gi|50555361|ref|XP_505089.1| YALI0F06644p [Yarrowia lipolytica]
gi|49650959|emb|CAG77896.1| YALI0F06644p [Yarrowia lipolytica CLIB122]
Length = 115
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNNKKLL RV+AFDRH NMVLENV+EMWTE KT G K V KDRFISKMF
Sbjct: 45 QVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKTKTASG-KPGKTVTKDRFISKMF 103
Query: 91 LRGDSVIIVL 100
LRGD+VI+V+
Sbjct: 104 LRGDTVILVV 113
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+L+NCRNN+K+LGRV+AFDRHCN++L + RE+WTE K+GK K A +NKDRFISK+F
Sbjct: 34 QILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGK-KGSAKYINKDRFISKLF 92
Query: 91 LRGDSVIIVLRNP 103
+RGDSVI++L++P
Sbjct: 93 VRGDSVILILKSP 105
>gi|302695697|ref|XP_003037527.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
gi|300111224|gb|EFJ02625.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
Length = 127
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 64/88 (72%), Gaps = 20/88 (22%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE----------------MWTELPKTGKGK 74
QVLI+ RN+KKLL RV+AFDRH NMVLENV+E MWTE+PK GK K
Sbjct: 42 QVLISLRNDKKLLARVKAFDRHSNMVLENVKEARQFTFSLPLNAYTQQMWTEIPK-GKNK 100
Query: 75 KKALPVNKDRFISKMFLRGDSVIIVLRN 102
K PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 101 K---PVNKDRFISKMFLRGDSVILILRN 125
>gi|444724875|gb|ELW65462.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 117
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINC NNKKLLGRV+AFDRHCNMVLENV+EMWTE+ KK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCCNNKKLLGRVKAFDRHCNMVLENVKEMWTEV-PKSGKGKKSKPVNKDRYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGD VI+VL+NP
Sbjct: 100 LRGDLVIVVLQNP 112
>gi|169844304|ref|XP_001828873.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
gi|116509985|gb|EAU92880.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
Length = 130
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 63/91 (69%), Gaps = 23/91 (25%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-------------------MWTELPKTG 71
QVLI+ RNNKKLL RV+AFDRH NMVLENV+E MWTE PK G
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEERPSPFTTIQEPRLMVNSQMWTETPK-G 100
Query: 72 KGKKKALPVNKDRFISKMFLRGDSVIIVLRN 102
K KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 101 KNKK---PVNKDRFISKMFLRGDSVILVLRN 128
>gi|349803317|gb|AEQ17131.1| putative small nuclear ribonucleoprotein sm d2 [Pipa carvalhoi]
Length = 116
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 70/73 (95%), Gaps = 2/73 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL V+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLL--VKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 98
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 99 LRGDSVIVVLRNP 111
>gi|432102126|gb|ELK29935.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 109
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN R NK LLGRV+AFD H NMVLENV E+ TE+PK+ KG+KK+ PV+KDR+IS MF
Sbjct: 31 QVLINYRKNKNLLGRVKAFDGHYNMVLENVEELGTEVPKSDKGRKKSKPVHKDRYISAMF 90
Query: 91 LR-GDSVIIVLRNP 103
R GDSVI+ LR+P
Sbjct: 91 PRAGDSVIVGLRHP 104
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI RNN+K+L +VRAFDRH NMVLENV EMWTE+P+ G KK+ P+ K+R+I+K+F
Sbjct: 30 QVLIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEVPRGSHG-KKSKPMKKERYITKLF 88
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI VL+NP+
Sbjct: 89 LRGDSVIFVLKNPQ 102
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 64/76 (84%), Gaps = 3/76 (3%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP---VNKDRFIS 87
Q+L+NCRNN+K+LGRV+AFDRHCN++L +VRE+WTE KT +KK +NKDRFIS
Sbjct: 35 QILVNCRNNRKILGRVKAFDRHCNLLLTDVREIWTEAVKTNSSQKKKSSNRFINKDRFIS 94
Query: 88 KMFLRGDSVIIVLRNP 103
K+F+RGDSVI++L++P
Sbjct: 95 KLFVRGDSVILILKSP 110
>gi|340501173|gb|EGR27984.1| small nuclear ribonucleoprotein sm d2, putative [Ichthyophthirius
multifiliis]
Length = 103
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI RNN+K+L RVRAFDRH NMVLENV EMWTE+P+ G +K+ P+ K+R+ SKMF
Sbjct: 30 QVLIALRNNRKILARVRAFDRHMNMVLENVLEMWTEVPRGSHG-QKSKPMRKERYHSKMF 88
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI VLRNP
Sbjct: 89 LRGDSVIFVLRNP 101
>gi|315042035|ref|XP_003170394.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
gi|311345428|gb|EFR04631.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
Length = 135
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKMF
Sbjct: 68 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFISKMF 123
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 124 LRGDSVILVL 133
>gi|71031308|ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gi|68352252|gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 62/74 (83%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+L RV+AFDRHCNM+L NVREMWT K G GKKK KDRF+S++F
Sbjct: 36 QVLINCRNNRKILARVKAFDRHCNMILTNVREMWTVRGK-GTGKKKL--ETKDRFLSRLF 92
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VL+NPK
Sbjct: 93 LRGDSVIVVLKNPK 106
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+L+NCRNN+KLL R +AFDRH NMVLENV EMWTE+PK + KK PVNK+RFI K+F
Sbjct: 41 QILVNCRNNRKLLARCKAFDRHMNMVLENVCEMWTEMPKK-QKGKKTKPVNKERFIHKLF 99
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+V++NPK
Sbjct: 100 LRGDSVILVIKNPK 113
>gi|84994530|ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gi|65302148|emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 106
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 62/74 (83%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+L RV+AFDRHCNM+L +VREMWT K G GKKK KDRFI+++F
Sbjct: 36 QVLINCRNNRKILARVKAFDRHCNMILTDVREMWTVRGK-GTGKKKL--ETKDRFITRLF 92
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VL+NPK
Sbjct: 93 LRGDSVIVVLKNPK 106
>gi|296809754|ref|XP_002845215.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|327292564|ref|XP_003230980.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
gi|238842603|gb|EEQ32265.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|326466786|gb|EGD92239.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
Length = 114
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFISKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|148709180|gb|EDL41126.1| mCG49198 [Mus musculus]
Length = 118
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 68/73 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNK+ +ISKMF
Sbjct: 41 QVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKNCYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
L GDS I+VLRNP
Sbjct: 101 LHGDSFIVVLRNP 113
>gi|154283173|ref|XP_001542382.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
gi|150410562|gb|EDN05950.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
Length = 103
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 59/70 (84%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK K VNKDRF+SKMF
Sbjct: 36 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKG----GKGKGVNKDRFVSKMF 91
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 92 LRGDSVILVL 101
>gi|325091149|gb|EGC44459.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus H88]
Length = 187
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMF
Sbjct: 120 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFVSKMF 175
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 176 LRGDSVILVL 185
>gi|258567138|ref|XP_002584313.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
gi|237905759|gb|EEP80160.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
Length = 114
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFVSKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|295670567|ref|XP_002795831.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225677515|gb|EEH15799.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb03]
gi|226284916|gb|EEH40482.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 114
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFVSKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|261189633|ref|XP_002621227.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|225561709|gb|EEH09989.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus
G186AR]
gi|239591463|gb|EEQ74044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|239613006|gb|EEQ89993.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ER-3]
gi|240275314|gb|EER38828.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 114
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFVSKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|226295357|gb|EEH50777.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb18]
Length = 114
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFVSKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|432118204|gb|ELK38063.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 118
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 64/73 (87%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLG V+AFDRHCNMVLENV+EMWT +PK+GK K+K+ VNKD +ISKMF
Sbjct: 41 QVLINCRNNKKLLGWVKAFDRHCNMVLENVKEMWTGVPKSGKSKEKSKTVNKDFYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
L D VI+V+RNP
Sbjct: 101 LHRDLVIVVMRNP 113
>gi|119174655|ref|XP_001239674.1| hypothetical protein CIMG_09295 [Coccidioides immitis RS]
gi|392869868|gb|EAS28397.2| small nuclear ribonucleoprotein Sm D2 [Coccidioides immitis RS]
Length = 114
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMF
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFVSKMF 102
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 103 LRGDSVILVL 112
>gi|444705722|gb|ELW47114.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 118
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 66/73 (90%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINC NNKKLLGRV+AFDRHCNM LEN++EMWTE PK+GKGKKK+ PVNKD +ISKMF
Sbjct: 41 QVLINCCNNKKLLGRVKAFDRHCNMALENMKEMWTEDPKSGKGKKKSKPVNKDGYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
L GDSVI+VL NP
Sbjct: 101 LHGDSVIVVLWNP 113
>gi|348572834|ref|XP_003472197.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
Length = 117
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNNKKLLG V+AFDRHCNMVLENV+EMWTE+ KK+ PVNKD +ISKMF
Sbjct: 41 QVLIDCRNNKKLLGLVKAFDRHCNMVLENVKEMWTEV-PKSGKGKKSKPVNKDCYISKMF 99
Query: 91 LRGDSVIIVLRNP 103
L G+SVI+VLRNP
Sbjct: 100 LHGESVIMVLRNP 112
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL+N RNN KLLGRV+A+DRH N++LE+V+EMWTE K GKGKK+ VNKDR++SKMF
Sbjct: 32 QVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEQSKGGKGKKRGTSVNKDRYVSKMF 91
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V+ NP
Sbjct: 92 LRGDSVILVVSNP 104
>gi|212529808|ref|XP_002145061.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074459|gb|EEA28546.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 117
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 57/69 (82%), Gaps = 4/69 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKM+
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMY 102
Query: 91 LRGDSVIIV 99
S++I+
Sbjct: 103 TSPASLLII 111
>gi|444729289|gb|ELW69714.1| Deleted in malignant brain tumors 1 protein [Tupaia chinensis]
Length = 1650
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 58/74 (78%), Positives = 68/74 (91%)
Query: 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 88
+ QVLINCRNNKKLLG V+AFDRH NMVLEN++E+WTE+PK+GKGKKK+ PVNKDR+ISK
Sbjct: 1571 ITQVLINCRNNKKLLGHVKAFDRHRNMVLENMKEIWTEVPKSGKGKKKSKPVNKDRYISK 1630
Query: 89 MFLRGDSVIIVLRN 102
MFL GDSVI+VL N
Sbjct: 1631 MFLCGDSVIVVLWN 1644
>gi|444706234|gb|ELW47583.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 86
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 68/73 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLG V+AF+RHCN+VLEN++EMWTE+PK+GKGKKK+ PVNKD +ISKMF
Sbjct: 9 QVLINCRNNEKLLGHVKAFNRHCNVVLENLKEMWTEVPKSGKGKKKSKPVNKDCYISKMF 68
Query: 91 LRGDSVIIVLRNP 103
L GDSVIIVL NP
Sbjct: 69 LHGDSVIIVLGNP 81
>gi|300175427|emb|CBK20738.2| unnamed protein product [Blastocystis hominis]
Length = 457
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLIN RNN KLL V+AFDRHCNMVLENV+E+WTE+PK+GKGKKKA + KDRFI K+FL
Sbjct: 382 VLINVRNNHKLLCHVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKAKAITKDRFIPKLFL 441
Query: 92 RGDSVIIVLRNP 103
RGDSV++V NP
Sbjct: 442 RGDSVVVVCSNP 453
>gi|169779295|ref|XP_001824112.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus oryzae RIB40]
gi|238499931|ref|XP_002381200.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|83772851|dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692953|gb|EED49299.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|391873159|gb|EIT82233.1| small nuclear ribonucleoprotein (snRNP) Sm core protein
[Aspergillus oryzae 3.042]
Length = 115
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI CR+N++LL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKMF
Sbjct: 48 QVLIACRSNRRLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFISKMF 103
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 104 LRGDSVILVL 113
>gi|169614612|ref|XP_001800722.1| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
gi|160702782|gb|EAT81846.2| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
Length = 133
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 59/86 (68%), Gaps = 17/86 (19%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM- 89
QVLI+CRNN+K+L RV+AFDRHCNMVLEN +EMWTE P+ G + VNKDRFISK+
Sbjct: 47 QVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLANG-QYGRKVNKDRFISKLY 105
Query: 90 ---------------FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 106 VSSAFKTYAMLTASSFLRGDSVILVL 131
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
++I+CRNN KL+G+VRAFDRHCN++LENV+E+WTE K KGK ++++RFISK+FL
Sbjct: 43 IVISCRNNHKLIGKVRAFDRHCNLILENVKELWTETSKNNKGKATK-SISRERFISKLFL 101
Query: 92 RGDSVIIVLR 101
RGDS++I+L+
Sbjct: 102 RGDSIVIILK 111
>gi|344302812|gb|EGW33086.1| hypothetical protein SPAPADRAFT_60395 [Spathaspora passalidarum
NRRL Y-27907]
Length = 112
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 61/71 (85%), Gaps = 3/71 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK-KALPVNKDRFISKMF 90
++I+CRNN KL+ +V+AFDRHCN+VLENV+E+WTE K KGKK K+ P K+RF+SKMF
Sbjct: 43 IVISCRNNHKLIAKVKAFDRHCNLVLENVKELWTETVKNNKGKKIKSTP--KERFVSKMF 100
Query: 91 LRGDSVIIVLR 101
LRGDSVII+++
Sbjct: 101 LRGDSVIIIVK 111
>gi|146421306|ref|XP_001486603.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
gi|146390018|gb|EDK38176.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
Length = 112
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+CRNN K++ RV+AFDRHCNMVLENV+E+WTE K GKG K V+K+RF+SK+FL
Sbjct: 43 VVISCRNNHKMVARVKAFDRHCNMVLENVKELWTESVKNGKG-KVVNSVSKERFVSKLFL 101
Query: 92 RGDSVIIVLR 101
RGDSV+IV++
Sbjct: 102 RGDSVVIVVK 111
>gi|50423747|ref|XP_460458.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
gi|49656127|emb|CAG88765.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
Length = 115
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+CRNN KL+ +V+AFDRHCN++LENV+E+WTE K KG KK +K+RF+SKMFL
Sbjct: 43 VVISCRNNHKLIAKVKAFDRHCNLILENVKELWTESVKNNKG-KKIKSTSKERFVSKMFL 101
Query: 92 RGDSVIIVLR 101
RGDSV+IVL+
Sbjct: 102 RGDSVVIVLK 111
>gi|403253972|ref|XP_003919759.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 117
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNK+LLGRV+AF RHCNMVLENV+EMWTE+ KK+ PV+KDR +SKMF
Sbjct: 41 QVLINCRNNKQLLGRVKAFHRHCNMVLENVKEMWTEV-PKSSKGKKSKPVSKDRRVSKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSV +VLRNP
Sbjct: 100 LRGDSVTVVLRNP 112
>gi|403222339|dbj|BAM40471.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 105
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 60/74 (81%), Gaps = 4/74 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+L RV+AFDRH NM+L +VREMWT KG KK + KDRFI+++F
Sbjct: 36 QVLINCRNNRKILARVKAFDRHFNMILTDVREMWT---VKSKGNKKKMET-KDRFITRLF 91
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI+VL+NPK
Sbjct: 92 LRGDSVIVVLKNPK 105
>gi|346325342|gb|EGX94939.1| small nuclear ribonucleoprotein Sm D2 [Cordyceps militaris CM01]
Length = 145
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 71 VQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKM 129
Query: 90 FL 91
++
Sbjct: 130 YV 131
>gi|448118540|ref|XP_004203524.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|448120946|ref|XP_004204107.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384392|emb|CCE79096.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384975|emb|CCE78510.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
Length = 113
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+++CRNN KL+ RV+AFDRHCN++LENV+E+WTE + KG +K ++K+RF+SKMFL
Sbjct: 43 VVVSCRNNHKLVARVKAFDRHCNLILENVKELWTESVRNNKG-QKVNSISKERFVSKMFL 101
Query: 92 RGDSVIIVLR 101
RGDSVIIVL+
Sbjct: 102 RGDSVIIVLK 111
>gi|67470740|ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gi|167383658|ref|XP_001736617.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|167391078|ref|XP_001739631.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|56468055|gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|165896637|gb|EDR23988.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|165900902|gb|EDR27123.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|407040095|gb|EKE39972.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449709579|gb|EMD48820.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba
histolytica KU27]
Length = 101
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%), Gaps = 2/73 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKL+ RV+AFDRH NMVLEN++E+WTE+ + GK KA R ISKMF
Sbjct: 25 QVLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEMKRDSDGKLKAKLCQ--RSISKMF 82
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI++++NP
Sbjct: 83 LRGDSVIVIVKNP 95
>gi|448517223|ref|XP_003867742.1| Smd2 core Sm protein [Candida orthopsilosis Co 90-125]
gi|380352081|emb|CCG22305.1| Smd2 core Sm protein [Candida orthopsilosis]
Length = 111
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+CRNN KL+G++RAFDRHCN+VLENV+E+WTE K + K+ V+++RFISKMFL
Sbjct: 43 VIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTETVKNEFNQTKS--VSRERFISKMFL 100
Query: 92 RGDSVIIVLR 101
RGDSVII+L+
Sbjct: 101 RGDSVIIILK 110
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba invadens
IP1]
Length = 100
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QV+INCRNNKKL+ RV+AFDRH NMVLENV+E WTE+ K +GK K P R +SKMF
Sbjct: 25 QVIINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTEMQKMPEGKPK--PKTCHRNVSKMF 82
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVIIV++ P+
Sbjct: 83 LRGDSVIIVVKAPE 96
>gi|149245030|ref|XP_001527049.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146449443|gb|EDK43699.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 110
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%), Gaps = 3/72 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
L ++I+CRNN KL+G+VRAFDRHCN+VLENV+E+WTE T GK K +P ++RFISKM
Sbjct: 41 LPIVISCRNNHKLVGKVRAFDRHCNLVLENVKELWTE-KVTEFGKTKNVP--RERFISKM 97
Query: 90 FLRGDSVIIVLR 101
FLRGDSVIIV++
Sbjct: 98 FLRGDSVIIVVK 109
>gi|281209973|gb|EFA84141.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 667
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/61 (86%), Positives = 57/61 (93%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNNKKLLG VRAFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKDRFISK+
Sbjct: 32 QVLINVRNNKKLLGTVRAFDRHCNMVLENVKEMWTEIPKTGKGKKKAKPVNKDRFISKIL 91
Query: 91 L 91
+
Sbjct: 92 I 92
>gi|354543718|emb|CCE40440.1| hypothetical protein CPAR2_104760 [Candida parapsilosis]
Length = 111
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+CRNN KL+G++RAFDRHCN+VLENV+E+WTE K + K+ V+++RFISK+FL
Sbjct: 43 VIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTETVKNEFNQTKS--VSRERFISKLFL 100
Query: 92 RGDSVIIVLR 101
RGDSVII+L+
Sbjct: 101 RGDSVIIILK 110
>gi|119570508|gb|EAW50123.1| hCG2040270 [Homo sapiens]
Length = 117
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCR+N KLLG V+AF RHCNMVLENV+E WTE+ KK+ PVNKD +IS+MF
Sbjct: 41 QVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEV-PKSGKGKKSKPVNKDCYISRMF 99
Query: 91 LRGDSVIIVLRNP 103
L GD VI+VLRNP
Sbjct: 100 LHGDLVIVVLRNP 112
>gi|322696181|gb|EFY87977.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium acridum CQMa
102]
Length = 120
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 63 QVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKM 120
>gi|403414237|emb|CCM00937.1| predicted protein [Fibroporia radiculosa]
Length = 114
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 59/75 (78%), Gaps = 7/75 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVR---EMWTELPKTGKGKKKALPVNKDRFIS 87
QVLI+ RNNKKLL RV+AFDRH + V+ +MWTELPK GK KK PVNKDRFIS
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSTGKCKRVQTFVQMWTELPK-GKNKK---PVNKDRFIS 97
Query: 88 KMFLRGDSVIIVLRN 102
KMFLRGDSVI++LRN
Sbjct: 98 KMFLRGDSVILILRN 112
>gi|255718831|ref|XP_002555696.1| KLTH0G15246p [Lachancea thermotolerans]
gi|238937080|emb|CAR25259.1| KLTH0G15246p [Lachancea thermotolerans CBS 6340]
Length = 108
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K KK VN++RFISK+FL
Sbjct: 43 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-----KQNKKT--VNRERFISKLFL 95
Query: 92 RGDSVIIVLRNP 103
RGDS+IIVLR P
Sbjct: 96 RGDSIIIVLRAP 107
>gi|403216466|emb|CCK70963.1| hypothetical protein KNAG_0F03010 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KK NK+RFISK+FL
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKHNKTTNKERFISKLFL 96
Query: 92 RGDSVIIVLRNP 103
RGDSVII+L+ P
Sbjct: 97 RGDSVIIILKAP 108
>gi|154310658|ref|XP_001554660.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 116
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 53/60 (88%), Gaps = 3/60 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK-TGKGKKKALPVNKDRFISKM 89
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ +G GK + PVNKDRFISK+
Sbjct: 48 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLSGGGKGR--PVNKDRFISKI 105
>gi|344232757|gb|EGV64630.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 137
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 60/71 (84%), Gaps = 3/71 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN-KDRFISKMF 90
V+I+CRNN KL+ +V+AFDRHCN++LENV+E+WTE K KG K + VN K+RF+SK+F
Sbjct: 68 VVISCRNNHKLVAKVKAFDRHCNLILENVKELWTEPVKNNKG--KVIKVNQKERFVSKLF 125
Query: 91 LRGDSVIIVLR 101
LRGDSVI+V++
Sbjct: 126 LRGDSVIVVVK 136
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
Length = 112
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 60/72 (83%), Gaps = 5/72 (6%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK--KKALPVNKDRFISKM 89
V+++CRNN K++G+V+AFDRHCN++LE+V+E+WTE + KG K A +K+RFISK+
Sbjct: 43 VVVHCRNNHKVIGKVKAFDRHCNLILEDVKELWTETTRNSKGAVIKTA---SKERFISKL 99
Query: 90 FLRGDSVIIVLR 101
FLRGDSVIIVL+
Sbjct: 100 FLRGDSVIIVLK 111
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 59/72 (81%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNM+LENV+E+WTE KGK+ VNK+RFISK+FL
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMILENVKELWTE----KKGKR---VVNKERFISKLFL 96
Query: 92 RGDSVIIVLRNP 103
RGDSVI++L+ P
Sbjct: 97 RGDSVIVILKAP 108
>gi|367005899|ref|XP_003687681.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
gi|357525986|emb|CCE65247.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
Length = 109
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFD+HCNMVLENV+E+WTE K K K +NK+RFISK+FL
Sbjct: 43 VIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE-----KNKDKV--INKERFISKLFL 95
Query: 92 RGDSVIIVLRNP 103
RGDSVIIVL+ P
Sbjct: 96 RGDSVIIVLKAP 107
>gi|109089899|ref|XP_001087489.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
gi|355745907|gb|EHH50532.1| hypothetical protein EGM_01380 [Macaca fascicularis]
Length = 118
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 65/72 (90%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINC NNKKLLG V+AFDRH NMVLENV+EMWTE+PK+GKGKKK+ PVNKD +ISKMF
Sbjct: 41 QVLINCGNNKKLLGHVKAFDRHRNMVLENVKEMWTEVPKSGKGKKKSKPVNKDCYISKMF 100
Query: 91 LRGDSVIIVLRN 102
L DSVI+VLRN
Sbjct: 101 LHRDSVIVVLRN 112
>gi|410074971|ref|XP_003955068.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
gi|372461650|emb|CCF55933.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
Length = 114
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK VN++RFISK+FL
Sbjct: 48 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKS-----LVNRERFISKLFL 100
Query: 92 RGDSVIIVLRNP 103
RGDSVI+VL+ P
Sbjct: 101 RGDSVIVVLKAP 112
>gi|6323305|ref|NP_013377.1| Smd2p [Saccharomyces cerevisiae S288c]
gi|6226704|sp|Q06217.2|SMD2_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|2340971|gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
gi|151940982|gb|EDN59363.1| Sm D2 [Saccharomyces cerevisiae YJM789]
gi|190405334|gb|EDV08601.1| small nuclear ribonucleoprotein Sm D2 [Saccharomyces cerevisiae
RM11-1a]
gi|259148258|emb|CAY81505.1| Smd2p [Saccharomyces cerevisiae EC1118]
gi|285813692|tpg|DAA09588.1| TPA: Smd2p [Saccharomyces cerevisiae S288c]
gi|349579983|dbj|GAA25144.1| K7_Smd2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 110
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+FL
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKLFL 96
Query: 92 RGDSVIIVLRNP 103
RGDSVI+VL+ P
Sbjct: 97 RGDSVIVVLKTP 108
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK VN++RFISK+FL
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKST-----VNRERFISKLFL 96
Query: 92 RGDSVIIVLRNP 103
RGDSVI++++ P
Sbjct: 97 RGDSVIVIVKAP 108
>gi|392297783|gb|EIW08882.1| Smd2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 80
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+FL
Sbjct: 14 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKLFL 66
Query: 92 RGDSVIIVLRNP 103
RGDSVI+VL+ P
Sbjct: 67 RGDSVIVVLKTP 78
>gi|444721759|gb|ELW62473.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 135
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 55/61 (90%), Gaps = 2/61 (3%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+C +NKK++G ++AFDRHC+MVLENV+EMWTE+PK+ KG KK+ PVNKD +ISKMF
Sbjct: 41 QVLIHC-HNKKVMGHMKAFDRHCDMVLENVKEMWTEVPKSRKG-KKSKPVNKDHYISKMF 98
Query: 91 L 91
L
Sbjct: 99 L 99
>gi|50287515|ref|XP_446187.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525494|emb|CAG59111.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN KL+ RV+AFDRHCN+VLENV+E+WTE KK +N++RFISK+FL
Sbjct: 44 VIISLRNNHKLIARVKAFDRHCNLVLENVKELWTE-------KKNKQTINRERFISKLFL 96
Query: 92 RGDSVIIVLRNP 103
RGDSVI++L+ P
Sbjct: 97 RGDSVIVILKAP 108
>gi|156840670|ref|XP_001643714.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114337|gb|EDO15856.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 109
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KG K +NK+RFISK+FL
Sbjct: 43 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KKGNKT---INKERFISKLFL 95
Query: 92 RGDSVIIVLRNP 103
RGDS+I++L+ P
Sbjct: 96 RGDSIIVILKAP 107
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 59/72 (81%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KGK+ +N++RFISK+FL
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KKGKQ---IINRERFISKLFL 96
Query: 92 RGDSVIIVLRNP 103
RGDS+I++L+ P
Sbjct: 97 RGDSIIVILKAP 108
>gi|367016959|ref|XP_003682978.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
gi|359750641|emb|CCE93767.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
Length = 109
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE +G K NK+RFISK+FL
Sbjct: 43 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KRGNKAE---NKERFISKLFL 95
Query: 92 RGDSVIIVLRNP 103
RGDSVI+VL+ P
Sbjct: 96 RGDSVIVVLKAP 107
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ R+++FDRHCNMVLENV+E+WTE +GKK NK+RFISK+FL
Sbjct: 43 VIISLRNNHKIIARIKSFDRHCNMVLENVKELWTE----KEGKKL---TNKERFISKLFL 95
Query: 92 RGDSVIIVLRNP 103
RGDSVI+VL+ P
Sbjct: 96 RGDSVIVVLKAP 107
>gi|355562622|gb|EHH19216.1| hypothetical protein EGK_19888 [Macaca mulatta]
Length = 118
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 65/72 (90%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINC NNKKLLG V+AFDRH NMVLE+V+EMWTE+PK+GKGKKK+ PVNKD +ISKMF
Sbjct: 41 QVLINCGNNKKLLGHVKAFDRHRNMVLEDVKEMWTEVPKSGKGKKKSKPVNKDCYISKMF 100
Query: 91 LRGDSVIIVLRN 102
L DSVI+VLRN
Sbjct: 101 LHRDSVIVVLRN 112
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 11/96 (11%)
Query: 8 FSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 67
F F++ +L+ A V+I+ RNN K++ RV++FDRHCNMVLENV+E+W+E
Sbjct: 23 FEFKHGPMSLIQEAMTAR----TPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSE- 77
Query: 68 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
+GKK + NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 78 ---REGKKIS---NKERFISKLFLRGDSVIVVLKAP 107
>gi|259487148|tpe|CBF85589.1| TPA: small nuclear ribonucleoprotein SmD2, putative
(AFU_orthologue; AFUA_5G12910) [Aspergillus nidulans
FGSC A4]
Length = 113
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 4/61 (6%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ R+N+KLL RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISKM+
Sbjct: 47 QVLISLRSNRKLLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISKMY 102
Query: 91 L 91
L
Sbjct: 103 L 103
>gi|47215802|emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 59/60 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 99
>gi|296418693|ref|XP_002838960.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634953|emb|CAZ83151.1| unnamed protein product [Tuber melanosporum]
Length = 96
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 51/70 (72%), Gaps = 17/70 (24%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLEN R PVNKDRFISKMF
Sbjct: 42 QVLISCRNNRKLLARVKAFDRHCNMVLENGR-----------------PVNKDRFISKMF 84
Query: 91 LRGDSVIIVL 100
LRGDSVI+VL
Sbjct: 85 LRGDSVILVL 94
>gi|12718491|emb|CAC28820.1| probable small nuclear ribonucleoprotein chain D2 [Neurospora
crassa]
Length = 126
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G KK PVNKDRFISKMF
Sbjct: 49 QVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG-KKGKPVNKDRFISKMF 107
Query: 91 LR 92
+
Sbjct: 108 VH 109
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 57/71 (80%), Gaps = 4/71 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI+ RNN KLL +V+AFDRHCNM+LENV+E+WTE + KK + ++RF+SKMFL
Sbjct: 43 VLISLRNNHKLLAKVKAFDRHCNMILENVKEIWTETNPDDRNKK----MMRERFVSKMFL 98
Query: 92 RGDSVIIVLRN 102
RGDSVI+VL++
Sbjct: 99 RGDSVIVVLKH 109
>gi|444315235|ref|XP_004178275.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
gi|387511314|emb|CCH58756.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
Length = 109
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
++I+ RNN K++ RV+AFD+HCNMVLENV+E+WTE G K +NK+RFISK+FL
Sbjct: 43 IIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE----RNGNKL---INKERFISKLFL 95
Query: 92 RGDSVIIVLRNP 103
RGDSVI++L++P
Sbjct: 96 RGDSVIVILKSP 107
>gi|326472609|gb|EGD96618.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton tonsurans CBS
112818]
gi|326483579|gb|EGE07589.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton equinum CBS
127.97]
Length = 129
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 57/96 (59%), Gaps = 30/96 (31%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM- 89
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKM
Sbjct: 36 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFISKMY 91
Query: 90 -------------------------FLRGDSVIIVL 100
FLRGDSVI+VL
Sbjct: 92 VYTKLARTFPSHRICDNTILTRPSRFLRGDSVILVL 127
>gi|255724860|ref|XP_002547359.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
gi|240135250|gb|EER34804.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
Length = 112
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
++I+CRNN KL+G+VRAFDRHCN+VLENV+++W+E KK V K+RFISK+FL
Sbjct: 43 IIISCRNNHKLIGKVRAFDRHCNLVLENVKDLWSE-DIKNNKGKKIKSVPKERFISKLFL 101
Query: 92 RGDSVIIVLR 101
RGDSVII+L+
Sbjct: 102 RGDSVIIILK 111
>gi|68071819|ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56498082|emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +F
Sbjct: 31 QVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVIKDKKKKKKIN---KDRYISILF 87
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI++LRNPK
Sbjct: 88 LRGDSVILILRNPK 101
>gi|70942126|ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|70945863|ref|XP_742706.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519539|emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
gi|56521836|emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +F
Sbjct: 31 QVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVVKDKKKKKKIN---KDRYISILF 87
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI++LRNPK
Sbjct: 88 LRGDSVILILRNPK 101
>gi|238882386|gb|EEQ46024.1| small nuclear ribonucleoprotein Sm D2 [Candida albicans WO-1]
Length = 112
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
++I+CRNN KL+G+VRAFDRHCN+VLENV+E+WTE KK ++K+RFISKMFL
Sbjct: 43 IIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DIKNNKGKKIKSISKERFISKMFL 101
Query: 92 RGDSVIIVLR 101
RGDSVII+L+
Sbjct: 102 RGDSVIIILK 111
>gi|82915132|ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23485713|gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +F
Sbjct: 31 QVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEIIKDKKKKKKIN---KDRYISILF 87
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI++LRNPK
Sbjct: 88 LRGDSVILILRNPK 101
>gi|124801422|ref|XP_001349689.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|3845296|gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+K+LGRV+AFDRHCN++L VRE+W E+ K KKK +NKDR+IS +F
Sbjct: 31 QVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKD---KKKKKKINKDRYISILF 87
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI++LRNPK
Sbjct: 88 LRGDSVILILRNPK 101
>gi|327352187|gb|EGE81044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 131
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKM+
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFVSKMY 102
Query: 91 LRGDSVIIVLRN 102
++ ++ ++ N
Sbjct: 103 VQTNTCLLATGN 114
>gi|241951640|ref|XP_002418542.1| small nuclear ribonucleoprotein sm d2, putative; small nuclear
riboucleoprotein (snrnp) core protein d2, putative
[Candida dubliniensis CD36]
gi|223641881|emb|CAX43844.1| small nuclear ribonucleoprotein sm d2, putative [Candida
dubliniensis CD36]
Length = 112
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
++I+CRNN KL+G+VRAFDRHCN+VLENV+E+WTE KK ++K+RFISK+FL
Sbjct: 43 IIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DIKNNKGKKIKSISKERFISKLFL 101
Query: 92 RGDSVIIVLR 101
RGDSVII+L+
Sbjct: 102 RGDSVIIILK 111
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%), Gaps = 7/70 (10%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN KL+ RV++FD+HCNMVLENV+E+WTE GKK VN++RF++K+FL
Sbjct: 47 VIISLRNNHKLIARVKSFDKHCNMVLENVKEIWTE---NVNGKK----VNRERFVAKLFL 99
Query: 92 RGDSVIIVLR 101
RGDSVIIV++
Sbjct: 100 RGDSVIIVVK 109
>gi|116208252|ref|XP_001229935.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88184016|gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKM
Sbjct: 47 QVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETP--VHNGKKGRPVNKDRFISKM 103
>gi|156093647|ref|XP_001612862.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium vivax Sal-1]
gi|221052951|ref|XP_002257850.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|148801736|gb|EDL43135.1| small nuclear ribonucleoprotein Sm D2, putative [Plasmodium vivax]
gi|193807682|emb|CAQ38386.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
gi|390371035|dbj|GAB64916.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium cynomolgi strain
B]
Length = 101
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNN+KLL RV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +F
Sbjct: 31 QVLINCRNNRKLLARVKAFDRHCNLLLTEVREIWVEVVKDKKKKKKIN---KDRYISILF 87
Query: 91 LRGDSVIIVLRNPK 104
LRGDSVI++LRNPK
Sbjct: 88 LRGDSVILILRNPK 101
>gi|328350738|emb|CCA37138.1| Probable small nuclear ribonucleoprotein Sm D2 [Komagataella
pastoris CBS 7435]
Length = 108
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 55/72 (76%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RN+ KL+ +V+AFDRHCNMVLENV+E WT++ K V ++RF+SKMFL
Sbjct: 43 VIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDINNGTK-------VTRERFVSKMFL 95
Query: 92 RGDSVIIVLRNP 103
RGDSV+++L++
Sbjct: 96 RGDSVVVILKHS 107
>gi|254566467|ref|XP_002490344.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
gi|238030140|emb|CAY68063.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
Length = 124
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 55/72 (76%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RN+ KL+ +V+AFDRHCNMVLENV+E WT++ K V ++RF+SKMFL
Sbjct: 59 VIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDINNGTK-------VTRERFVSKMFL 111
Query: 92 RGDSVIIVLRNP 103
RGDSV+++L++
Sbjct: 112 RGDSVVVILKHS 123
>gi|302652082|ref|XP_003017901.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
gi|291181486|gb|EFE37256.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
Length = 111
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 46/59 (77%), Gaps = 4/59 (6%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKM
Sbjct: 57 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK----PKGGKGKGVNKDRFISKM 111
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 52/85 (61%), Gaps = 14/85 (16%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR------ 84
Q + RNN+K LGRV+AFDRH NM+LEN+ EMW E+ K KGK P K R
Sbjct: 71 QAFLELRNNRKHLGRVKAFDRHMNMILENLTEMWIEISKETKGKS---PCYKQRKIQNQY 127
Query: 85 -----FISKMFLRGDSVIIVLRNPK 104
+I KMFLRGDSVI LRN K
Sbjct: 128 KIIFYYIPKMFLRGDSVIYTLRNLK 152
>gi|385303470|gb|EIF47543.1| small nuclear ribonucleoprotein sm d2 [Dekkera bruxellensis
AWRI1499]
Length = 136
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 53/71 (74%), Gaps = 4/71 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+LI+ RNN KL+ +V+AFDRHCNM+LENVRE W E + +K + ++RF+ KMFL
Sbjct: 43 ILISLRNNHKLIAKVKAFDRHCNMILENVREFWNETXPNDRKRK----IVRERFVLKMFL 98
Query: 92 RGDSVIIVLRN 102
RGDSVI++L +
Sbjct: 99 RGDSVIVILNH 109
>gi|413942323|gb|AFW74972.1| hypothetical protein ZEAMMB73_294095 [Zea mays]
Length = 116
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 44/51 (86%), Gaps = 2/51 (3%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK--KALP 79
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+ +T + K +LP
Sbjct: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVGRTERSLKLLSSLP 81
>gi|444721316|gb|ELW62058.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 165
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%), Gaps = 2/63 (3%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVL++CRN +KLLGR +A DR CNMV +NV+E+W E+P++GKGKK PV+KD +S+M
Sbjct: 74 QVLLDCRN-QKLLGRAKALDRRCNMVPDNVKELWAEVPQSGKGKKSK-PVHKDCHVSRML 131
Query: 91 LRG 93
L G
Sbjct: 132 LPG 134
>gi|320037519|gb|EFW19456.1| small nuclear ribonucleoprotein Sm D2 [Coccidioides posadasii str.
Silveira]
Length = 100
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 4/58 (6%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 88
QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SK
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSK 100
>gi|444720876|gb|ELW61643.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 144
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 55/73 (75%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q LINC +KK+LG V FDRH MVLENV+ M TE PK GK KKK+ PVNKDR+ISKMF
Sbjct: 11 QELINCFYDKKILGCVETFDRHYTMVLENVKRMRTEFPKNGKDKKKSKPVNKDRYISKMF 70
Query: 91 LRGDSVIIVLRNP 103
L + I+VL+NP
Sbjct: 71 LHRNVGIVVLQNP 83
>gi|238006980|gb|ACR34525.1| unknown [Zea mays]
gi|414586341|tpg|DAA36912.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 85
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 42/51 (82%), Gaps = 5/51 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE-----LPKTGKGKKK 76
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE P+ + K++
Sbjct: 32 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEDFLSRSPRLARAKRR 82
>gi|313233805|emb|CBY09974.1| unnamed protein product [Oikopleura dioica]
Length = 53
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 42/49 (85%), Gaps = 1/49 (2%)
Query: 55 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
MVLENV+EMW E PKT KGK PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 1 MVLENVKEMWVERPKTSKGKG-GQPVNRDRFISKMFLRGDSVIIVLKNP 48
>gi|429327958|gb|AFZ79718.1| hypothetical protein BEWA_025670 [Babesia equi]
Length = 921
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 47/58 (81%), Gaps = 2/58 (3%)
Query: 46 VRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
V+AFDRHCNM+L + RE+WTE K G GKK+ + KDR +S++FLRGDSVI+VL+NP
Sbjct: 865 VKAFDRHCNMILTDARELWTETVKVG-GKKQRSSI-KDRHLSRVFLRGDSVIVVLKNP 920
>gi|67522691|ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
gi|40745811|gb|EAA64967.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
Length = 73
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 4/62 (6%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+Q L+ ++ L RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISKM
Sbjct: 6 IQTLLQKPRSECTLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISKM 61
Query: 90 FL 91
+L
Sbjct: 62 YL 63
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 6/69 (8%)
Query: 33 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 92
L++CR+NKKL G +RA+D+H N+++E+VRE+W E + P ++RFIS++F+R
Sbjct: 257 LVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQE------SQPDRPPDLRERFISRLFVR 310
Query: 93 GDSVIIVLR 101
GD VI ++R
Sbjct: 311 GDGVIFIVR 319
>gi|403287226|ref|XP_003934853.1| PREDICTED: uncharacterized protein LOC101043343 [Saimiri
boliviensis boliviensis]
Length = 269
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q L+NC +NKKLL V+A DRHCNMVLEN EM TE+PK+GKGKKK+ PV+KDR+I+KMF
Sbjct: 41 QGLLNCHSNKKLLDPVKASDRHCNMVLEN-EEMRTEVPKSGKGKKKSKPVDKDRYIAKMF 99
Query: 91 LRGDSVIIVLRNP 103
L G+ I+VLR+P
Sbjct: 100 LCGNWAIVVLRHP 112
>gi|194745332|ref|XP_001955142.1| GF18622 [Drosophila ananassae]
gi|190628179|gb|EDV43703.1| GF18622 [Drosophila ananassae]
Length = 56
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 47/49 (95%)
Query: 55 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
MVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 49
>gi|164657289|ref|XP_001729771.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
gi|159103664|gb|EDP42557.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
Length = 104
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 68
QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+P
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP 79
>gi|242087889|ref|XP_002439777.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
gi|241945062|gb|EES18207.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
Length = 105
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 37/39 (94%)
Query: 66 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
++PKTGKGKK ALPVNKDRFISK+FLRG+ VIIVLR+PK
Sbjct: 67 QVPKTGKGKKAALPVNKDRFISKIFLRGNRVIIVLRDPK 105
>gi|403272537|ref|XP_003928113.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein Sm D2-like [Saimiri boliviensis
boliviensis]
Length = 221
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI+C NNKKLLG V AFD HCN VLENV+EM TE+ KK+ PVNK R+I MF
Sbjct: 41 QVLISCSNNKKLLGGVXAFDGHCNAVLENVKEMGTEV-PKSGKGKKSKPVNKARYIPGMF 99
Query: 91 LRGDSVIIVLRN 102
L D +N
Sbjct: 100 LLRDPSSCPSQN 111
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 7/69 (10%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I RNN+KL+G +RAFD+H N++LENVRE+WT + +R+I+KM L
Sbjct: 22 VIIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKN-------IFYHERYIAKMIL 74
Query: 92 RGDSVIIVL 100
RGDS++++L
Sbjct: 75 RGDSIVLLL 83
>gi|161899517|ref|XP_001712984.1| mRNA splicing factor [Bigelowiella natans]
gi|75756479|gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+++I+ +N K G +R FD+HCN++LE+V E+W E + KK + + K++FI K+F
Sbjct: 30 KIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVI-KEKFIPKLF 88
Query: 91 LRGDSVIIV 99
RGD+VI++
Sbjct: 89 FRGDAVILI 97
>gi|449292825|gb|EMC90804.1| Small nuclear ribonucleoprotein Sm D2 [Columba livia]
Length = 54
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 48/49 (97%)
Query: 55 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 49
>gi|399949825|gb|AFP65482.1| small nuclear ribonucleoprotein SM D2 [Chroomonas mesostigmatica
CCMP1168]
Length = 85
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 6/70 (8%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I RNNKKLLG +RAFDRH N++++N +E+WT K K K K ++F K+ L
Sbjct: 21 VMIFIRNNKKLLGYIRAFDRHMNLIIDNGKEIWTS--KCSKKKVKF----HEKFFPKLVL 74
Query: 92 RGDSVIIVLR 101
RGDS+I+++R
Sbjct: 75 RGDSIILIVR 84
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T K KG+KK R + K+F+
Sbjct: 35 VLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKN-KGRKKRQGCEFSRKLGKVFI 93
Query: 92 RGDSVIIV 99
RGD+VI+V
Sbjct: 94 RGDTVILV 101
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T K KG+KK R + K+F+
Sbjct: 35 VLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKN-KGRKKRQGCEFSRKLGKVFI 93
Query: 92 RGDSVIIV 99
RGD+VI+V
Sbjct: 94 RGDTVILV 101
>gi|123414193|ref|XP_001304446.1| Sm protein [Trichomonas vaginalis G3]
gi|121885898|gb|EAX91516.1| Sm protein [Trichomonas vaginalis G3]
Length = 111
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 12 NSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTG 71
N QT M A+ + +LI R+N+KL G ++A DRH NM+LE+V E+ T P
Sbjct: 18 NLQTGPMAPIVKAV-YDKEPLLIALRSNRKLYGYIKAVDRHWNMILEHVIEI-TPTP-AK 74
Query: 72 KGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
G+ A P+ R I+++FLRGD+VI + NPK
Sbjct: 75 PGQPAAAPIQ--RRINRLFLRGDNVICIYPNPK 105
>gi|165934067|gb|ABY74561.1| small nuclear ribonucleoprotein D2 (predicted) [Callithrix jacchus]
Length = 53
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 55 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
MVLENV+EMWTE+PK+GK KK+ PV+KDR+ISKMF RGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGK-GKKSKPVSKDRYISKMFRRGDSVIVVLRNP 48
>gi|401827885|ref|XP_003888235.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
gi|392999435|gb|AFM99254.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
Length = 128
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 88
++ VL++ RNN+K++G+V A+DRH N+++E+ +E+ T K +GKKK R +
Sbjct: 32 MMPVLVSLRNNRKVVGKVIAYDRHYNLLMEDAKELGTMRGKN-RGKKKRQGCGFSRRLGN 90
Query: 89 MFLRGDSVIIV 99
+F+RGD+VI+V
Sbjct: 91 VFIRGDTVILV 101
>gi|224137176|ref|XP_002327056.1| predicted protein [Populus trichocarpa]
gi|222835371|gb|EEE73806.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 12/82 (14%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVR-------EMWTEL-PKTGKGKKKALPVNK 82
QVLIN NNKKLL A H + L R + L KTGKG++KA +N+
Sbjct: 38 QVLINLCNNKKLL----AHSHHMVVWLAAGRLYPSCRFHAYALLVEKTGKGEEKARTINR 93
Query: 83 DRFISKMFLRGDSVIIVLRNPK 104
+RFISK+FLRGDSVI++L N +
Sbjct: 94 ERFISKIFLRGDSVIVILMNQR 115
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata
strain Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + C+N ++L+GR+ AFD HCNMVL +V E T + K + V K R +F+
Sbjct: 22 IYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNETTKVTK-RDNGTIFV 80
Query: 92 RGDSVIIV 99
RGDS++++
Sbjct: 81 RGDSLVLL 88
>gi|303314445|ref|XP_003067231.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240106899|gb|EER25086.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 44
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 36/46 (78%), Gaps = 4/46 (8%)
Query: 55 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 100
MVLENV+EMWTE PK K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 1 MVLENVKEMWTEKPKG----GKGKGVNKDRFVSKMFLRGDSVILVL 42
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 88
++ VLI+ RNN+K+ G+V A+DRH N+++ RE T + KG+KK R +
Sbjct: 32 MIPVLISLRNNRKVTGKVVAYDRHYNLLVREAREFGTARGRN-KGRKKRQGSEFSRKLGN 90
Query: 89 MFLRGDSVIIV 99
+F+RGD+VI+V
Sbjct: 91 VFIRGDTVILV 101
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 88
+ VL++ RNN+K++G+V A+DRH N+++ + +E+ + KGKKK + R +
Sbjct: 32 AMPVLVSLRNNRKVMGKVIAYDRHYNLLMGDAKEIGN-MRGRNKGKKKRQGCDFSRRLGN 90
Query: 89 MFLRGDSVIIV 99
+F+RGD+VI+V
Sbjct: 91 VFIRGDTVILV 101
>gi|146098272|ref|XP_001468379.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|157875373|ref|XP_001686081.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|398021989|ref|XP_003864157.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
gi|401428184|ref|XP_003878575.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68129154|emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|134072746|emb|CAM71463.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|322494823|emb|CBZ30127.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322502391|emb|CBZ37475.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
Length = 103
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V I CRN+K LL V AFD+H N+VL+ V+E+ TE G ++ K R I +FL
Sbjct: 42 VFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ-----KQRTIENLFL 91
Query: 92 RGDSVIIVLRNP 103
RG+SVI +++ P
Sbjct: 92 RGESVIFIVKLP 103
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGKKKALPVNKDRFISK 88
V I + N+++ G++ A+D HCN++LE+ E + TE P+TG N D
Sbjct: 22 VYIKSKGNREITGKLHAYDEHCNIILEDAVETITVITEDPETGTESTSVNTKNSDV---- 77
Query: 89 MFLRGDSVIIVLRNPK 104
+F+RGDS+I+V +PK
Sbjct: 78 LFVRGDSIILV--SPK 91
>gi|154344332|ref|XP_001568110.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065444|emb|CAM40878.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V I CRN+K LL V AFD+H N+VL+ V+E+ TE G ++ K R I +FL
Sbjct: 42 VFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ-----KQRTIENLFL 91
Query: 92 RGDSVIIVLRNP 103
RG+SV+ +++ P
Sbjct: 92 RGESVVFIVKLP 103
>gi|162606564|ref|XP_001713312.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
gi|12580778|emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 17/76 (22%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM------WTELPKTGKGKKKALPVNKDR 84
V+I RNNK+++G++ +D+H N++LENV E+ ++EL K K +
Sbjct: 16 SVMIILRNNKRMIGKIINYDKHLNLLLENVNEIKFVGENFSELIKI-----------KSK 64
Query: 85 FISKMFLRGDSVIIVL 100
FI K+FLRGD+++++L
Sbjct: 65 FIPKVFLRGDNIVLIL 80
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QV + CR N++L G + A+D H NMVL NV E + E + + K R I +F
Sbjct: 18 QVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSEKKLKKRR-IEMLF 76
Query: 91 LRGDSVIIV 99
LRGD +I+V
Sbjct: 77 LRGDLIILV 85
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN+++L GR+RAFD+H NMVL +V E T + + + + R + +F
Sbjct: 28 KVYVKMRNDRELRGRLRAFDQHLNMVLSDVEETITTR-EVDEDTFEEIYRQSKRVVPMLF 86
Query: 91 LRGDSVIIV 99
+RGDSVI+V
Sbjct: 87 VRGDSVILV 95
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFIS 87
+V I CR +++++G++ A+D H NMVL +V E+ T + P TG + K R +
Sbjct: 21 RVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPLTGDEQTK----KTTRRLP 76
Query: 88 KMFLRGDSVIIV 99
+FLRGD++I+V
Sbjct: 77 LIFLRGDAIILV 88
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN+++L GR+RAFD+H NMVL V E T + + + + R + +F
Sbjct: 28 KVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEEIYRQSKRVVPMLF 86
Query: 91 LRGDSVIIV 99
+RGDSVI+V
Sbjct: 87 VRGDSVILV 95
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFIS 87
+V I CR +++++G++ A+D H NMVL +V E+ T + P TG + K R +
Sbjct: 21 RVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQTK----KTTRRLP 76
Query: 88 KMFLRGDSVIIV 99
+FLRGD++I+V
Sbjct: 77 LIFLRGDAIILV 88
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN+++L GR+RAFD+H NMVL V E T + + + + R + +F
Sbjct: 28 RVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEEIYKQTKRVVPMLF 86
Query: 91 LRGDSVIIV 99
+RGDSVI+V
Sbjct: 87 VRGDSVILV 95
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK-MF 90
+ + C+N ++L+GR+ AFD HCNMVL V E T + G+ P R S+ +F
Sbjct: 22 IYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTV--DGEPNTNQQPNKVTRRDSRTVF 79
Query: 91 LRGDSVIIV 99
+RGDS+I++
Sbjct: 80 VRGDSLILL 88
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ NK R + MF
Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVEIDEETFEELFRTNK-RTVPMMF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 IRGDGVILV 94
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISK 88
+ + C+ ++++GR+ A+D HCNM+L + +E T P T + KK++ R
Sbjct: 22 IYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPTTNEEIKKSVQ----RDSGT 77
Query: 89 MFLRGDSVIIVLRNPK 104
+F+RGDS+I++ + +
Sbjct: 78 VFIRGDSLILLSHHEQ 93
>gi|402077069|gb|EJT72418.1| hypothetical protein GGTG_09284, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 142
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 26/29 (89%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLEN 59
QVLI+ RNN+KLL RV+AFD HCNMVLEN
Sbjct: 114 QVLISIRNNRKLLARVKAFDYHCNMVLEN 142
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN++++ GR+RAFD+H NMVL V E T + + + + R + +F
Sbjct: 28 RVYVKMRNDREIRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEEIYRQTKRVVPMLF 86
Query: 91 LRGDSVIIV 99
+RGDSVI+V
Sbjct: 87 VRGDSVILV 95
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC 50439]
Length = 92
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + CR ++ L GR+ A+D H NMVL V E+ P +G K P+ +D + +F
Sbjct: 21 RIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVIE--PPVKEGVKHRRPIRRD--LDTIF 76
Query: 91 LRGDSVIIVLRNP 103
+RGD +I+V NP
Sbjct: 77 VRGDGIILV--NP 87
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 6 IRFSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
I+ R Q L L F E+ VL+ R ++L G+++ +D HCNMVL + +E
Sbjct: 4 IQPEQREDQQPLDLIRFQLDEY----VLVKLRGARELKGKLQGYDSHCNMVLSDAQEFIY 59
Query: 66 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
L + K K P+ K +F+RGDSVI++
Sbjct: 60 SLDENSKIKD---PIVKK--TDMVFVRGDSVILI 88
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM- 89
++ + C+ +++L+G++ A+D H NM+L NVRE + K ++ N + + KM
Sbjct: 21 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETY----------KYSVKENDEETVKKME 70
Query: 90 ------FLRGDSVIIV 99
F+RGDS+I+V
Sbjct: 71 RNLDMVFVRGDSIILV 86
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans
morsitans]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 8 FSFRNSQTTLMLFCFWALEFIVL----QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 63
+ Q ++L L+ I L +V + RN ++L GR+ AFD+H NMVL + E
Sbjct: 1 MAGEEEQAQVVLSVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 60
Query: 64 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
T + + ++ K R I +F+RGD VI+V
Sbjct: 61 VTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGVILV 95
>gi|442746065|gb|JAA65192.1| Putative small nuclear ribonucleoprotein d2 polypeptide, partial
[Ixodes ricinus]
Length = 131
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 52 HCNMVLENVREMWTELP-KTGKGKKKALPV-NKDR--FISKMFLRGDSVIIVLRNP 103
+CNM +ENV+EMWTE + + +++ PV KDR +MFLRGDSVI+VL P
Sbjct: 55 YCNMFVENVKEMWTETSNERERYREETNPVRTKDRPTIYQRMFLRGDSVILVLNEP 110
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V I R +KL G++RAFD+H N++L NV EM+ E K + PV +++
Sbjct: 21 VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQE-------KTRTFPV--------LYI 65
Query: 92 RGDSVIIV 99
RGD VI++
Sbjct: 66 RGDLVILI 73
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFIS 87
+V+I CR+ +++ G++ A+D+H NMV+ N +E T + P+T KK N R
Sbjct: 385 EVVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETNNEVKK----NVVRNFE 440
Query: 88 KMFLRGDSVIIV 99
++LRGD+VI++
Sbjct: 441 ALYLRGDAVILI 452
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 14/95 (14%)
Query: 6 IRFSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MW 64
++ + Q L L F +++V+++ R ++L G+++ +D HCNMVL + E ++
Sbjct: 4 VKTEHQQLQEPLDLIRFQLDDYVVVKL----RGARELYGKLQGYDSHCNMVLSDATETIY 59
Query: 65 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
+ P T KKK +F+RGDSVI++
Sbjct: 60 GDSPDTKPVKKKT---------DMVFVRGDSVILI 85
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++L+ RN+++L GR+ A+D+H NMVL +V E T + + ++ +K R I ++
Sbjct: 28 RILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITTVEIDDETFEELYKTSK-RQIPMLY 86
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 87 VRGDGVILV 95
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 29 KVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 VRGDGVILV 96
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL----PKTGKGKKKALPVNKDRFIS 87
V + R ++L G + A+D HC+MVL NV E E PK KKK+
Sbjct: 24 VFVKLRGGRELYGLLHAYDIHCSMVLGNVEETVFEYVEGSPKLEARKKKS---------E 74
Query: 88 KMFLRGDSVIIVLRNP 103
+F+RGDSVI+V NP
Sbjct: 75 MLFVRGDSVILVTSNP 90
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D H NMVL + E+ T K KAL + + +F+
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLFV 80
Query: 92 RGDSVIIV 99
RGDSVI++
Sbjct: 81 RGDSVILI 88
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 26 KVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLF 84
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 85 VRGDGVILV 93
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 27 KIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETYEEVYKSTK-RNIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QV I + +++L G + A+D+H NMVL NV E E+ + ++ + + R I +F
Sbjct: 20 QVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDKETNEQQMK-STTRKIGMLF 78
Query: 91 LRGDSVIIVL 100
LRGD VI+V+
Sbjct: 79 LRGDGVILVV 88
>gi|302408451|ref|XP_003002060.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
gi|261358981|gb|EEY21409.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
Length = 96
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL--PKTG 71
QVLI+ RNN+KLL RV+AFDRHCNM + + + E P+ G
Sbjct: 47 QVLISIRNNRKLLARVKAFDRHCNMCVPPLHRVSPEASSPRPG 89
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 29 KVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 VRGDGVILV 96
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 29 KVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 VRGDGVILV 96
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R +++L GR+ A+D+H NM+L V E T + + ++ + NK R + +F
Sbjct: 22 RIYVKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEIDDETYEEIIKTNK-RAVPFLF 80
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 81 VRGDGVILV 89
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ AFD+H NMVL + E T + + ++ +K R I +F
Sbjct: 26 KIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTSK-RTIPMLF 84
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 85 VRGDGVILV 93
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 73 KIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEVYKSTK-RSIPMLF 131
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 132 VRGDGVILV 140
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKM 89
+V + CRN+++L G++ AFD+H NMVL +V E T + + ++ VNK R + +
Sbjct: 16 RVYVKCRNDRELRGKLHAFDQHLNMVLSDVEETITSTEEDDETGEEI--VNKRTRSVGML 73
Query: 90 FLRGDSVIIV 99
F+RGD V++V
Sbjct: 74 FVRGDIVVLV 83
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 26 KIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLF 84
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 85 VRGDGVILV 93
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 30 IYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEIDEETYEEIYKSTK-RSIQMLFV 88
Query: 92 RGDSVIIV 99
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V I R +KL G++RAFD+H N++L NV E++ E K + PV +++
Sbjct: 21 VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEIYQE-------KTRTFPV--------LYI 65
Query: 92 RGDSVIIV 99
RGD VI++
Sbjct: 66 RGDLVILI 73
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + +K R I +F
Sbjct: 27 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSK-RTIPYLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NMVL V E T + + ++ K R I +F
Sbjct: 27 RIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTIEIDEETYEEVYRTTK-RTIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 22 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKTTK-RNIPMLF 80
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 81 VRGDGVILV 89
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 27 KIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEVYKSTK-RSIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 93 KVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLF 151
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 152 VRGDGVILV 160
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + +K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEIDDETYEEIVKTSK-RVVPYLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC
30864]
Length = 106
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++L+ R +++L GR+ A+D+H NM+L +V E T + + ++ + K R + +F
Sbjct: 32 RILVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVEIDEETFEEMVKTTK-REVPMLF 90
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 91 VRGDGVILV 99
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + RN ++L GR+ A+D+H NMVL V E T + + ++ K R I +F+
Sbjct: 31 VYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTAVEIDEETYEEIYKQTK-RTIPMLFV 89
Query: 92 RGDSVIIV 99
RGD VI+V
Sbjct: 90 RGDGVILV 97
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ AFD+H NM+L +V E T + + ++ K R I +F
Sbjct: 30 RIFVKLRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDDETYEEIYRQVK-RSIPMLF 88
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 89 VRGDGVILV 97
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 182 KVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLF 240
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 241 VRGDGVILV 249
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGKKKALPVNKDRFISK 88
+ + CR +++L G ++A+D+H NMVL +V E T EL P+T + K R I
Sbjct: 19 IYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEELIK----QSKRTIEM 74
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 75 LFVRGDVVILV 85
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
Length = 100
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + G++ + K + +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETIKTIKKQEEM--LFV 85
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 86 RGDSVVLI 93
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NMVL E T + + ++ K R IS +F
Sbjct: 27 RIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGKKKALPVNKDRFISK 88
+ + CR +++L G ++A+D+H NMVL +V E T EL P+T + L R I
Sbjct: 19 IYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPET----YEELIKQSKRTIEM 74
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 75 LFVRGDVVILV 85
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Megachile rotundata]
Length = 103
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NMVL E T + + ++ K R IS +F
Sbjct: 27 RIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 29 KVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 VRGDGVILV 96
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN++++ GR+ AFD+H NM+L V E T + + + + + R I +F+
Sbjct: 32 IYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEEMHKQTKRHIPMLFV 90
Query: 92 RGDSVIIV 99
RGD++I+V
Sbjct: 91 RGDAIILV 98
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NMVL E T + + ++ K R IS +F
Sbjct: 20 RIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLF 78
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 79 VRGDGVILV 87
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NMVL + E T + + ++ K R I +F
Sbjct: 27 RIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + G++ + K + +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQEEM--LFV 85
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 86 RGDSVVLI 93
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R+N++L GR+ A+D+H NMVL +V E+ T + + ++ N R +F
Sbjct: 29 RIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEIDDETYEEVYTKNT-RTFPMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 IRGDGVILV 96
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus
gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Pan troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo
abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Loxodonta africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan
paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio
anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V++ R +++L G + A+D H NM+L +V E + +G K ++ V K R I +++
Sbjct: 22 VMVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKPSIRVAK-RQIEMLYV 80
Query: 92 RGDSVIIV 99
RGD VI+V
Sbjct: 81 RGDGVILV 88
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D H N VL + E+ T K KAL + + +F+
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EXLFV 80
Query: 92 RGDSVIIV 99
RGDSVI++
Sbjct: 81 RGDSVILI 88
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM- 89
+V + C+ ++++ G++ A+D H NM+L N RE + K+++ N + I K+
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNARETY----------KQSVTENDEESIKKIE 70
Query: 90 ------FLRGDSVIIV 99
F+RGDS+I+V
Sbjct: 71 RNLDMVFVRGDSIILV 86
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 34 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLF 92
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 93 VRGDGVVLV 101
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 22 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLF 80
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 81 VRGDGVVLV 89
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + + + L + R I +F
Sbjct: 28 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 87 VRGDGVVLV 95
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Takifugu rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + + + L + R I +F
Sbjct: 28 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 87 VRGDGVVLV 95
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 21 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLF 79
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 80 VRGDGVVLV 88
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + + + L + R I +F
Sbjct: 28 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 87 VRGDGVVLV 95
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + + + L + R I +F+
Sbjct: 31 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLFV 89
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 90 RGDGVVLV 97
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW--TELPKTGKGKKKALPVNKDRFISK 88
+V + C+ ++++ G++ A+D H NM+L N RE + T + + KK +R +
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMENDEESVKKI-----ERNLDM 75
Query: 89 MFLRGDSVIIV 99
+F+RGDS+I+V
Sbjct: 76 VFVRGDSIILV 86
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ R +++ G+++ +D HCNM+L + E ++P +G++ PV K+ +F+
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVP---EGQE---PVTKN--TDMVFV 76
Query: 92 RGDSVIIV 99
RGDSVI++
Sbjct: 77 RGDSVILI 84
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 27 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 85
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 86 RGDGVVLV 93
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ AFD+H NM+L +V E T + + ++ + K R I +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTK-RTIEFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NMVL +V E T + + ++ ++ R I +F
Sbjct: 28 RIYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSVEIDEETFEEVYKTSR-RSIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 87 VRGDGVILV 95
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ AFD+H NM+L +V E T + + ++ + K R I +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTK-RTIEFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 28 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 87 VRGDGVVLV 95
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 34 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93
+ RN+++L GR+ FD+H NM++ V E T L + ++ + R I +F+RG
Sbjct: 31 VKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEEIYRTTQ-RTIPMIFIRG 89
Query: 94 DSVIIVLRNP 103
D VI++ +P
Sbjct: 90 DGVILISPSP 99
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Danio rerio]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + CR +++L G + A+D+H NMVL V E T + + + + + R + +F+
Sbjct: 19 IYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVT-VQELDEETYEEIIKQSKRQVEMLFI 77
Query: 92 RGDSVIIV 99
RGD+VI+V
Sbjct: 78 RGDAVILV 85
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L G++ A+D+H NMVL + E T + + ++ NK R I +F
Sbjct: 27 RIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTNK-RNIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|443924030|gb|ELU43109.1| hypothetical protein AG1IA_02870 [Rhizoctonia solani AG-1 IA]
Length = 50
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 63 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 98
MWTE K GK VNKDRFISKMFLRGDSVI+
Sbjct: 1 MWTETQKGKNGK----TVNKDRFISKMFLRGDSVIL 32
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ AFD+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTK-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 28 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 87 VRGDGVVLV 95
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ AFD+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 22 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTK-RTVPFLF 80
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 81 VRGDGVILV 89
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN ++L G++ AFD+H NMVL +V E+ + + + + + K R I +F+
Sbjct: 28 IYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEEIYRQKKRTIQMLFV 86
Query: 92 RGDSVIIV 99
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + + K + R + +F+
Sbjct: 24 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTVS----RKLEMLFV 79
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 80 RGDSVVMI 87
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member
[Tribolium castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN++++ GR+ A+D+H NM+L + E T + + ++ K R I +F
Sbjct: 27 RIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYEEVYRTTK-RNIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + K + R + +F+
Sbjct: 24 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYMQDEEDEADLKTVS----RKLEMLFV 79
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 80 RGDSVVLI 87
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R ++L GR+ A+D+H NM+L V E T + + ++ + K R I +F
Sbjct: 24 RIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEIIKTQK-RVIPFLF 82
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 83 VRGDGVILV 91
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN ++L G++ AFD+H NMVL +V E+ + + + + + K R I +F+
Sbjct: 55 IYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEEIYRQKKRTIQMLFV 113
Query: 92 RGDSVIIV 99
RGD VI+V
Sbjct: 114 RGDGVILV 121
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ AFD+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVEIDDETYEEIVRTTK-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 28 RIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 87 VRGDGVVLV 95
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L +I ++ + ++ ++L+G+ AFDRH N VL + E PK G GK++ +D
Sbjct: 10 LNYINYRMRVTIQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQQGGEEREDR 69
Query: 84 RFISKMFLRGDSVI 97
R + + LRG+ V+
Sbjct: 70 RTLGLILLRGEEVV 83
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NM+L V E T + + ++ K R I +F
Sbjct: 30 RIYVKMRNERELKGRLNAYDQHLNMILGEVEETVTSIEIDEETYEEVYRTTK-RNIPMLF 88
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 89 VRGDGVILV 97
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L GR+ AFD+H NMVL E T + + ++ K R I +F
Sbjct: 32 RIYVKMRHDRELRGRLHAFDQHLNMVLGEAEETITTIEVDEETFEEVYKTTK-RTIPMLF 90
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 91 VRGDGVILV 99
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica
Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + K R I +F
Sbjct: 30 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTIPFLF 88
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 89 VRGDGVILV 97
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 7/72 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP---KTGKGKKKALPVNKDRFIS 87
++L+ R +++L G+++AFD+H N+VL +V E ++ +TG+ KA+ R +
Sbjct: 16 EILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEELIKAVK----RKMP 71
Query: 88 KMFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 72 MLFVRGDGVILV 83
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + + N++L G + AFD H NM+L NV E T L + ++ K R I +F
Sbjct: 30 KIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTTLEIDEETYEEVYKTTK-RTIPMLF 88
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 89 IRGDGVILV 97
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
Length = 96
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK--- 88
VL+ R ++L G+++ +D HCNMVL + +E + G + + K+ + K
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSS----KEPIVKKTAM 81
Query: 89 MFLRGDSVIIV 99
+F+RGDSVI++
Sbjct: 82 VFVRGDSVILI 92
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + K R I +F
Sbjct: 24 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTK-RTIPFLF 82
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 83 VRGDGVILV 91
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R ++L GR+ A+D+H NM+L V E T + + ++ + K R I +F
Sbjct: 24 RIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEIIKTQK-RVIPFLF 82
Query: 91 LRGDSVIIV 99
+RGD +I+V
Sbjct: 83 VRGDGIILV 91
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM-F 90
V + R +++L GR+ A+D HCN+VL V E ++ + G+ V + S+M F
Sbjct: 27 VFVKLRGDRELQGRLHAYDSHCNLVLGEVTETIYQVAEEAGGED----VRTLKKQSEMLF 82
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + + N++L G + AFD H NM+L NV E T L + ++ K R I +F
Sbjct: 32 KIYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTLEIDEETYEEVYKTTK-RTIPMLF 90
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 91 IRGDGVILV 99
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D+H NM+L V E T + + ++ K R I +F
Sbjct: 30 RIYVKMRNERELKGRLNAYDQHLNMILGEVAETVTSIEIDEETYEEVYRTTK-RNIPMLF 88
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 89 VRGDGVILV 97
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN ++L GR+ AFD+H N+VL + E T + + ++ K R I +F
Sbjct: 29 KVYVKMRNERELRGRLHAFDQHLNIVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 VRGDGVILV 96
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN++++ GR+ AFD+H NM+L V E T + + ++ K R I +F+
Sbjct: 30 IYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEMHKQTK-RQIPMLFV 88
Query: 92 RGDSVIIV 99
RGD++I+V
Sbjct: 89 RGDAIILV 96
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
VL+ R ++L G+++ +D HCNMVL + E ++T P+ K + +F
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDSENTSEEPIVKKTAM--VF 83
Query: 91 LRGDSVIIV 99
+RGDSVI++
Sbjct: 84 VRGDSVILI 92
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+VL+ R +++L G + A+D+H NMVL NV E + + ++ + K R + ++
Sbjct: 20 KVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDETGEELVKTAK-RVLPMLY 78
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 79 VRGDGVILV 87
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 99
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 26 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 84
Query: 92 RGDSVIIV 99
+GD V++V
Sbjct: 85 QGDGVVLV 92
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L G++ A+D+H NMVL + E T + + ++ K R I +F
Sbjct: 27 RIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTTK-RTIPMLF 85
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 86 VRGDGVILV 94
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R ++L GR+ AFD+H NMVL + E T + + ++ K R I +F
Sbjct: 26 KIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLF 84
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 85 VRGDGVILV 93
>gi|443924031|gb|ELU43110.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 125
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMV 56
QVLI+ RNNKKLL RV+AFDRH NMV
Sbjct: 89 QVLISLRNNKKLLARVKAFDRHSNMV 114
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTK-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana
ARSEF 2860]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L G++ A+D HCN+VL V E + + + + K++ R +F+
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYGVEEDDEEEAKSVS----RKSEMLFV 81
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 82 RGDSVVLI 89
>gi|323456789|gb|EGB12655.1| hypothetical protein AURANDRAFT_60633 [Aureococcus anophagefferens]
Length = 779
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 34 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93
+NC +G ++AFDRH N+VL + E T +P + +A PV RF+ ++ +RG
Sbjct: 176 VNCIRGS-CVGLLKAFDRHMNLVLVDAAE--TTVPPM-RNPDRARPVT--RFLKQVLIRG 229
Query: 94 DSVIIVLRNP 103
D+V++V R P
Sbjct: 230 DNVVLVCRAP 239
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 88
+V + R +++L G + A+D H N++L +V E M + P+ G + + + K R +
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPEGGPEEHSTVNIAK-RKMDM 80
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 81 LFVRGDGVILV 91
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 17/79 (21%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD-RFISK- 88
+V + R +KL G ++AFD HCN+VL + E EL V+ + RF +K
Sbjct: 16 KVYVKLRGARKLTGTLQAFDSHCNIVLSDAEETIYEL------------VDGNLRFETKT 63
Query: 89 ---MFLRGDSVIIVLRNPK 104
+F+RGDSV +V P+
Sbjct: 64 SEMIFVRGDSVTLVTAQPE 82
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L V E+ T + + ++ + ++ R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVEIDDETYEEIVRTSR-RTVPYLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 89
QV + R +++L GR+ A+D HCN+VL +V E ++T G ++ + +
Sbjct: 24 QVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYT----VGDDEEDDSVKTIKKQSEML 79
Query: 90 FLRGDSVIIV 99
F+RGDSV+++
Sbjct: 80 FVRGDSVVLI 89
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 11/69 (15%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
VL+ R +++ G+++ +D HCNMVL + E ++ E +GK + +F
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMVLSDATEYIYAENQDKPQGKSTDM----------VF 74
Query: 91 LRGDSVIIV 99
+RGDSVI++
Sbjct: 75 IRGDSVILI 83
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 24 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTVPFLF 82
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 83 VRGDGVILV 91
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTK-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R +++L G++ A+D+H NM+L NV E + K + ++ + N R I +F
Sbjct: 25 RIFVKMRQDRELRGKLHAYDQHLNMILSNVEETIKVVEKDEETDEEIVK-NIKRNIDMLF 83
Query: 91 LRGDSVIIV 99
+RGD VI++
Sbjct: 84 VRGDGVILI 92
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + + K V+K + +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDDEEVKLQTVSKKSEM--LFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96
RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 2 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 60
Query: 97 IIV 99
++V
Sbjct: 61 VLV 63
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96
RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 2 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 60
Query: 97 IIV 99
++V
Sbjct: 61 VLV 63
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F
Sbjct: 24 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RAIPFLF 82
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 83 VRGDGVILV 91
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
Length = 85
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QV + R + L+G ++AFD HCN+VL + E EL G + + +R +F
Sbjct: 17 QVYVKLRGARSLVGTLQAFDSHCNIVLSDAIETIYELDDEGDLQ------SVERNSEMIF 70
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 71 VRGDTVTLI 79
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP-KTGKGKKKALPVNKDRFISKM 89
+V + CR +++L G + A+D H NMVL NV+E ++ G++ + V R I +
Sbjct: 28 KVNVKCRGDRELEGILYAYDPHMNMVLGNVKETSQKITIDEVTGEESTMKVT--RRIEML 85
Query: 90 FLRGDSVIIV 99
FLRGD VI+V
Sbjct: 86 FLRGDLVILV 95
>gi|429964879|gb|ELA46877.1| hypothetical protein VCUG_01651 [Vavraia culicis 'floridensis']
Length = 92
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 33 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 92
++N R+N+KL G VR D H NM+L +V E+ K KG KK +R I + LR
Sbjct: 24 IVNLRSNRKLCGIVRVIDHHFNMILTDVTEIRKTKSK-NKGVKKREGTTVERKIKCLVLR 82
Query: 93 GDSVIIV 99
GD+VI V
Sbjct: 83 GDNVISV 89
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + RN + L G++ A+D+H NMVL +V E T + + ++ K R I +F
Sbjct: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLF 83
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 84 VRGDGVILV 92
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F
Sbjct: 24 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLF 82
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 83 VRGDGVILV 91
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN++++ GR+ AFD+H NM+L V E T + + + + + R I +F
Sbjct: 62 RIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEEMHKQTKRQIPMLF 120
Query: 91 LRGDSVIIV 99
+RGD++I+V
Sbjct: 121 VRGDAIILV 129
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFIS 87
+V + + ++L G++ A+D+H NM+L +V E T + +T + KA + R +
Sbjct: 22 KVYVKLKGERELRGKLHAYDQHLNMILGDVEETVTSVEIDEETFEEIIKASEGDSSRMVP 81
Query: 88 KMFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 82 YLFVRGDGVILV 93
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKKKALPVNKDRFISK 88
+V + C+ ++++G++ A+D HCNM+L + E +T EL T + + +KD +
Sbjct: 16 RVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEVTTI-TSKDSGV-- 72
Query: 89 MFLRGDSVIIV 99
+F+RGD++I++
Sbjct: 73 VFVRGDALILL 83
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHIRTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN++++ GR+ AFD+H NM+L V E T + + + + + R I +F
Sbjct: 62 RIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEEMHKQTKRQIPMLF 120
Query: 91 LRGDSVIIV 99
+RGD++I+V
Sbjct: 121 VRGDAIILV 129
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL V E + + + + N + +F+
Sbjct: 26 VFVKLRGDRELRGRLHAYDSHCNLVLGEVEETIYVVDEDDDDTIRTVKKNSE----MLFV 81
Query: 92 RGDSVIIV 99
RGDSV+I+
Sbjct: 82 RGDSVVII 89
>gi|387593780|gb|EIJ88804.1| hypothetical protein NEQG_00623 [Nematocida parisii ERTm3]
gi|387595086|gb|EIJ92712.1| hypothetical protein NEPG_02403 [Nematocida parisii ERTm1]
Length = 91
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + + N++++G + D+H N++L + E T+LP KGKK+ + R + +F
Sbjct: 19 KVCVTVKGNREVVGTMELTDKHMNVLLRDAVETRTQLPSMLKGKKRQIKKVFTRTLGNVF 78
Query: 91 LRGDSVIIV 99
+RG++VI +
Sbjct: 79 IRGETVIAI 87
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Nomascus leucogenys]
Length = 102
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + +T + + + + R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI-ETDEETYEEIYKSTKRNIPMLFV 87
Query: 92 RGDSVIIV 99
GD V++V
Sbjct: 88 WGDGVVLV 95
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
+ + C+N ++L+GR++AFD HCNMVL V E T
Sbjct: 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETIT 55
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++L+G ++AFD HCN+VL + E +L G+ K+ N + +F
Sbjct: 17 RVYVKLRGARELIGTLQAFDSHCNIVLSDAVETIYQLE---SGELKSTEKNSEM----IF 69
Query: 91 LRGDSVIIVLRNPK 104
+RGDSV ++ P
Sbjct: 70 VRGDSVTLITTPPD 83
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN ++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNERELRGRLNAYDQHLNMILGDVEETVTTVEIDEETFEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD VI+V
Sbjct: 88 RGDGVILV 95
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQETLRTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|71417383|ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70875103|gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R NK L+ V AFD+H N+VL +V EL K + K+R I MF
Sbjct: 46 RVFIQSRFNKSLVATVVAFDKHFNLVLRDV----VELAMVNKQQ-------KERSIRNMF 94
Query: 91 LRGDSVIIVLRNP 103
LRG SV+ +++ P
Sbjct: 95 LRGGSVVFIVKLP 107
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ R N++L G++RAFD+H N+VL V E + + + PV +++
Sbjct: 21 VLVKLRGNRQLKGKLRAFDQHLNLVLTEVTETYNSV-------SRDFPV--------LYI 65
Query: 92 RGDSVIIV 99
RGD V+IV
Sbjct: 66 RGDLVVIV 73
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK A +++
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKPAEGADRED 67
Query: 84 -RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 68 RRTLGLVLLRGEEVI 82
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++++G++ A+D HCN+VL + E + + + + K + KDR + ++
Sbjct: 132 KVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDRPM--VY 185
Query: 91 LRGDSVIIV 99
LRGDSVI+V
Sbjct: 186 LRGDSVILV 194
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++++G++ A+D HCN+VL + E + + + + K + KDR + ++
Sbjct: 17 KVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDRPM--VY 70
Query: 91 LRGDSVIIV 99
LRGDSVI+V
Sbjct: 71 LRGDSVILV 79
>gi|71406106|ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70869094|gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R NK L+ V AFD+H N+VL +V EL K + K+R I MF
Sbjct: 46 RVFIQSRFNKSLVATVVAFDKHFNLVLRDV----VELAMVNKEQ-------KERSIRNMF 94
Query: 91 LRGDSVIIVLRNP 103
LRG SV+ +++ P
Sbjct: 95 LRGGSVVFIVKLP 107
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ V K + +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDANEEEVVRTVKKQSEM--LFV 85
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 86 RGDSVVLI 93
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Cucumis sativus]
Length = 101
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 85
E I ++ L R++++L G++ A+D+H NM+L +V E T + + ++ + ++ R
Sbjct: 22 ERIYVKSLXPLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSR-RT 80
Query: 86 ISKMFLRGDSVIIV 99
+ +F+RGD VI+V
Sbjct: 81 VPFLFVRGDGVILV 94
>gi|84043878|ref|XP_951729.1| small nuclear ribonucleoprotein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|33348718|gb|AAQ16042.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358544|gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
Length = 111
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 17/77 (22%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN---KDRFIS 87
+V I R NK L+ V AFD+H N+VL + E+ VN K+R I
Sbjct: 46 RVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTM--------------VNNEQKERSIR 91
Query: 88 KMFLRGDSVIIVLRNPK 104
MFLRG SV+ ++R P+
Sbjct: 92 NMFLRGASVVFIVRLPQ 108
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + + R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRATR-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|9837176|gb|AAG00462.1|AF280394_1 Sm-D2 [Trypanosoma brucei]
gi|261326673|emb|CBH09635.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei gambiense
DAL972]
Length = 111
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 17/77 (22%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN---KDRFIS 87
+V I R NK L+ V AFD+H N+VL + E+ VN K+R I
Sbjct: 46 RVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTM--------------VNNEQKERSIR 91
Query: 88 KMFLRGDSVIIVLRNPK 104
MFLRG SV+ ++R P+
Sbjct: 92 NMFLRGASVVFIVRLPQ 108
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune
H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 88
+V + R +++L G + A+D H N++L +V E M ++P+ + + V K R +
Sbjct: 21 RVFVKLRGDRQLEGVLHAYDGHMNLILSDVEETIMIVDVPEGAPESQGTVNVAK-RKMGM 79
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 80 LFVRGDGVILV 90
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + + R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKM 89
+V + C+ ++++ G++ A+D H NM+L N E + K + V K +R + +
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNAHETY----KQSVVENDEESVKKIERNLDMV 76
Query: 90 FLRGDSVIIV 99
F+RGDS+I+V
Sbjct: 77 FVRGDSIILV 86
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F
Sbjct: 47 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLF 105
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 106 VRGDGVILV 114
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V++ R +++L GR+ A+D HCN+VL +V E ++ + + + V K + +F
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEEDDDQEPRVRTVKKQSEM--LF 79
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 80 VRGDSVVLI 88
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++++ G++ A+D+H NM+L +V E T + + ++ + K R + +F
Sbjct: 22 RVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIVKTTK-RAVRYLF 80
Query: 91 LRGDSVIIV 99
+RGD+V +V
Sbjct: 81 VRGDAVTLV 89
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G+++++D H N+VLE+ E++ P + R + + +
Sbjct: 17 VLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELF--------------PDGQARKLGTVII 62
Query: 92 RGDSVIIV 99
RGD+VII+
Sbjct: 63 RGDNVIII 70
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R ++L G++ A+D+H NMVL +V E T + + ++ + K R + +F
Sbjct: 29 RIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEIIKRRK-RTVEMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 VRGDGVILV 96
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
Length = 85
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R + L G ++AFD HCN+VL + E EL G+ +K++ +F+
Sbjct: 17 VYVKLRGARALTGTLQAFDSHCNIVLSDAVETIYELDGNGELS------SKEKKSEMIFV 70
Query: 92 RGDSVIIV 99
RGDSV ++
Sbjct: 71 RGDSVTLI 78
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 99
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEREMIKTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + CR +++L G++ +D+H NM+L +V E T + + + + + R + +F
Sbjct: 15 RVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTST-EIDEETDEQIVKKQTRKVGMLF 73
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 74 VRGDIVVLV 82
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 12 NSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTG 71
Q L L F EF VL+ R +++ GR++ +D HCNMVL E
Sbjct: 9 QQQEPLDLIRFQLDEF----VLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYI-----YS 59
Query: 72 KGKKKALPVNKDRFISKMFLRGDSVIIV 99
G ++ + V K + F+RGDSVI++
Sbjct: 60 AGDEETV-VKKTEMV---FVRGDSVILI 83
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN ++L GR+ A+D++ NM+L V E T + + ++ K R I +F
Sbjct: 30 RIYVKMRNERELKGRLNAYDQYLNMILGEVEETVTSIEIDEETYEEVYRTTK-RNIPMLF 88
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 89 VRGDGVILV 97
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ I R +KL G++RAFD+H N++L +V E + E K + PV +++
Sbjct: 42 IFIKLRGGRKLKGKLRAFDQHLNIILTDVNETYQE-------KTRTFPV--------LYV 86
Query: 92 RGDSVIIV 99
RGD V+++
Sbjct: 87 RGDLVVLI 94
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E T + + ++ + ++ R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSR-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO
4308]
Length = 96
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEILRTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ R +++ GR++ +D HCNMVL + E +L G+ V K + F+
Sbjct: 25 VLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYIYDL---GEEVNSNPTVKKSEMV---FV 78
Query: 92 RGDSVIIVLRNP 103
RGDSVI++ NP
Sbjct: 79 RGDSVILI--NP 88
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKKKALPVNKDRFISK 88
+VLI R ++++ G + A+D H NMVL +V E T E+P++ ++ + + K R
Sbjct: 11 RVLIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPES-PNQEPTIRIVK-RNCEM 68
Query: 89 MFLRGDSVIIVL 100
+F+RGD V++V+
Sbjct: 69 LFVRGDGVVLVI 80
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK A +++
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKPAEGGDRED 67
Query: 84 -RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 68 RRTLGLVLLRGEEVI 82
>gi|426334164|ref|XP_004028631.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Gorilla gorilla gorilla]
Length = 55
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 55 MVLENVREMWTELPKTGKGKKKAL---PVNKDRFISKMFLRGDSVI 97
MVL+NV+EM TE+PK KG K P NKDRFISK+FL DSVI
Sbjct: 1 MVLKNVKEMCTEVPKGDKGGKGKKKSKPANKDRFISKLFLSRDSVI 46
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + RN+++L G++ ++D+H NM+L V E+ T + ++ + NK R + +F+
Sbjct: 41 VYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEETYEEIIKSNK-RSVPYLFV 99
Query: 92 RGDSVIIV 99
RGD+V ++
Sbjct: 100 RGDAVTLI 107
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R +++L G++ A+D+H NM+L +V E + K + ++ + N R I +F
Sbjct: 23 RIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIR-NIKRNIKMLF 81
Query: 91 LRGDSVIIV 99
+RGD VI++
Sbjct: 82 IRGDGVILI 90
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V++ R +++L GR+ A+D HCN+VL +V E ++ + + V K + +F
Sbjct: 22 VILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDDDDQEPRVRTVKKQSEM--LF 79
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 80 IRGDSVVLI 88
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEIIKTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus
ND90Pr]
Length = 96
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK--- 88
V++ R +++L GR+ A+D HCN+VL +V E + ++ + R I K
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDDDDQEPRV-----RTIKKQSE 76
Query: 89 -MFLRGDSVIIV 99
+F+RGDSV+++
Sbjct: 77 MLFIRGDSVVLI 88
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + + + ++K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDGETLKTIHKKSEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|340054745|emb|CCC49047.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma vivax
Y486]
Length = 111
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 14/94 (14%)
Query: 14 QTTLMLFCFWALEFIV---LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKT 70
+T++ F LE V +V I R NK L+ V AFD+H N+VL + E+ + K
Sbjct: 26 RTSVAAGPFSLLESAVRDGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDAVELT--MVKN 83
Query: 71 GKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
+ ++R I MFLRG SV+ V++ P+
Sbjct: 84 EQ---------RERSIRNMFLRGSSVVFVVKLPQ 108
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R ++ L G + A+D H N+VL V E + G+ A P + R +F
Sbjct: 23 RVFIKLRGDRTLTGNLHAYDAHMNLVLSQVEE-NIHIVDVGEDGTAAPPRIERRGFEMLF 81
Query: 91 LRGDSVII 98
+RGDSVI+
Sbjct: 82 IRGDSVIL 89
>gi|71051464|gb|AAH14600.1| LOC645339 protein [Homo sapiens]
Length = 55
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 55 MVLENVREMWTELPKTGKGKKK---ALPVNKDRFISKMFLRGDSVI 97
MVLENV+EM TE+PK G G K + P NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 34 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93
+ RN+++L GR+ A+D++ NM+L +V E T + + ++ K R I +F+RG
Sbjct: 31 VKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEIYKSMK-RNIPMLFVRG 89
Query: 94 DSVIIV 99
D V++V
Sbjct: 90 DGVVLV 95
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R +++L G++ A+D+H NM+L +V E + K + ++ + N R I +F
Sbjct: 23 RIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIR-NIKRNIKMLF 81
Query: 91 LRGDSVIIV 99
+RGD VI++
Sbjct: 82 VRGDGVILI 90
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 34 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93
+ RN+++L GR+ A+D++ NM+L +V E T + + ++ K R I +F RG
Sbjct: 31 VKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEIYKSMK-RNIPMLFFRG 89
Query: 94 DSVIIV 99
D V++V
Sbjct: 90 DGVVLV 95
>gi|342180098|emb|CCC89574.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma
congolense IL3000]
Length = 111
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R NK L+ V AFD+H N+VL + E+ + K+R I MF
Sbjct: 46 RVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELMMINDE-----------QKERSIRNMF 94
Query: 91 LRGDSVIIVLRNPK 104
LRG SV+ +++ P+
Sbjct: 95 LRGASVVFIVKLPQ 108
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R +++L G++ A+D+H NM+L +V E + K + ++ + K R I +F
Sbjct: 23 RIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIRVVEKDEETDEEIVKSIK-RKIKMLF 81
Query: 91 LRGDSVIIV 99
+RGD VI++
Sbjct: 82 VRGDGVILI 90
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGKKKALPVNKDRFISK 88
V + R +++L GR+ A+D HCN+VL +V E +W + + + V K +
Sbjct: 27 VFVKLRGDRELAGRLHAYDSHCNLVLGDVTETVYVWDD-----EDEDNVRAVKKQSEM-- 79
Query: 89 MFLRGDSVIIV 99
+F+RGDSV+++
Sbjct: 80 LFVRGDSVVLI 90
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++ G++ A+D+H NM+L +V E T + + ++ + K R + +F
Sbjct: 22 RVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIIKTTK-RAVRFLF 80
Query: 91 LRGDSVIIV 99
+RGD+V +V
Sbjct: 81 VRGDAVTLV 89
>gi|253744911|gb|EET01046.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia
intestinalis ATCC 50581]
Length = 83
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ R+ + G ++A+DRH N+V E W E K KK+ L
Sbjct: 23 VLVQLRSGHFIAGVLKAYDRHLNLVFSEATETWEENGIEYKEDKKSF-----------ML 71
Query: 92 RGDSVIIVLRN 102
RGD+VI+V+ N
Sbjct: 72 RGDNVIMVVSN 82
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + + ++ V K + +F+
Sbjct: 27 VFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVYVVDEEDE-QENVRTVKKQSEM--LFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F
Sbjct: 28 RIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLF 86
Query: 91 LRGDSVIIV 99
+ GD V++V
Sbjct: 87 VWGDCVVLV 95
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 121
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGK--GKKKALPVNKDRFI 86
+V + R +++L G + A+D H NM++ +V E M ++P G ++ V K R +
Sbjct: 22 RVFVKLRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDVPADGVLLPGAGSIKVAK-RRL 80
Query: 87 SKMFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 81 EMLFVRGDGVILV 93
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK +D
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKTTDGDREDR 67
Query: 84 RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 68 RTLGLVLLRGEEVI 81
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 102
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + RN+++L R+ A+D+H NM+ +V E T + + ++ K R I +F
Sbjct: 28 RIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLF 86
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 87 VRGDGVVLV 95
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREM--------WTELPKTGKGKKKALPVNKD 83
V++ R +++L GR+ A+D HCN+VL +V E + P+ KK++
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRVRTVKKQS------ 75
Query: 84 RFISKMFLRGDSVIIV 99
+F+RGDSV+++
Sbjct: 76 ---EMLFVRGDSVVLI 88
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK + + +
Sbjct: 17 VLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVI 62
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 15/79 (18%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM-------WTELPKTGKGKKKALPVNKD 83
Q+ + R +++L+G + A+D H N++L NV E T L T + K+++P+
Sbjct: 19 QIKVKLRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLESTTRFVKRSMPM--- 75
Query: 84 RFISKMFLRGDSVIIVLRN 102
+++RGD VI++ N
Sbjct: 76 -----LYIRGDGVILISPN 89
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK ++ R
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKTNEERDERR 67
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
Length = 94
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + + + + + +F+
Sbjct: 27 VFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYVVDEEDEDNVRTVK----KQSEMLFV 82
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 83 RGDSVVLI 90
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R+ ++L+G ++AFD HCN+VL + +E EL +G K +RF +F
Sbjct: 16 RVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELV---EGDLKT----TERFSEMIF 68
Query: 91 LRGDSVIIV 99
+RG V +V
Sbjct: 69 VRGGLVALV 77
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQEEM--LFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQEEM--LFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK + + +
Sbjct: 17 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVI 62
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KK + + R
Sbjct: 10 LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTSEEREERR 68
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 69 TLGLVLLRGEEVI 81
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +KL G ++AFD HCN+VL + E +L G+ K+ + + +F
Sbjct: 16 RVYVKLRGARKLSGTLQAFDSHCNIVLSDAEETIYQLI---DGELKS----ETKSSEMVF 68
Query: 91 LRGDSVIIV 99
+RGDSV +V
Sbjct: 69 VRGDSVTLV 77
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK + + +
Sbjct: 20 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVI 65
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 66 RGDNVILI 73
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R N+ L G++ A+D+H NMVL +V E T + + + + +R + ++
Sbjct: 19 RVTVKMRGNRVLSGQLHAYDQHLNMVLSDVVETIT-TSEIDEESYEEIIKTTERKMPMLY 77
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 78 VRGDGVILV 86
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK +N++
Sbjct: 10 LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK----INEER 63
Query: 84 ---RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 64 EDRRTLGLVLLRGEEVI 80
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK + + +
Sbjct: 22 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVI 67
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 68 RGDNVILI 75
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G ++++D+H N+VL + E+ ++ G GKK I + +
Sbjct: 17 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GSGKK----------IGTIVI 62
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
VL+ R +++ G+++ +D HCNMVL + +E ++ E + KK + +F
Sbjct: 67 VLVKLRGAREMKGKLQGYDSHCNMVLSDAQETIYGENEEDTVVKKTEM----------VF 116
Query: 91 LRGDSVIIV 99
+RGDSVI++
Sbjct: 117 VRGDSVILI 125
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V + R +++L GR+ A+D HCN+VL +V E ++ + + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDEENDEEVKTIS----RKSEMLF 81
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + ++ + K + +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDDENEEETIRTIKKQEEM--LFV 85
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 86 RGDSVVLI 93
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + + + + + +F+
Sbjct: 27 VFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYLVDEEDEDNVRTVK----KQSEMLFV 82
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 83 RGDSVVLI 90
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK +N++
Sbjct: 10 LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK----INEER 63
Query: 84 ---RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 64 EDRRTLGLVLLRGEEVI 80
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 88
+V + R +++L G + A+D H N++L +V E M + P+ + + + K R +
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDAPEGVPPSQSVVNMAK-RKVPM 80
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 81 LFVRGDGVILV 91
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
Length = 96
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V++ R +++L GR+ A+D HCN+VL +V E ++ + + + V K + +F
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEEEDLEPRVRTVKKQSEM--LF 79
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 80 VRGDSVVLI 88
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE----MWTELPKTGKGKKKALPVNKDRFI 86
+V + R +++L G + A+D H N+++ +V E + T+ TG+G L V K R +
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPTGQG---VLQVAK-RKM 77
Query: 87 SKMFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 78 EMLFVRGDGVILV 90
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V IN + + L G++ AFDRH N+VL E PK G+ +A PV + R +
Sbjct: 9 LKVTIN--DGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEMKRSLGL 66
Query: 89 MFLRGDSVI 97
+ LRG++V+
Sbjct: 67 VILRGETVV 75
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 14 QTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGK 72
+ L L F EF VLI R +++ G+++ +D HCNMVL E ++ + +
Sbjct: 5 EEPLDLIRFHLDEF----VLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDDVE 60
Query: 73 GKKKALPVNKDRFISKMFLRGDSVIIV 99
KK + +F+RGDSVI++
Sbjct: 61 TKKTEM----------VFVRGDSVILI 77
>gi|366997500|ref|XP_003678512.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
gi|342304384|emb|CCC72174.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
Length = 84
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R + L G ++AFD HCN+VL + E EL G K+ +R +F
Sbjct: 17 KVYVKLRGARSLTGTLQAFDSHCNIVLSDAVETIYELE---DGDLKS----TERQSEMIF 69
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 70 VRGDTVTLI 78
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++ G ++AFD HCN+VL N E EL G+ K+ + +F
Sbjct: 15 KVFVKLRGAREMTGVLQAFDSHCNIVLSNATETIYELV---DGELKS----STKGSEMVF 67
Query: 91 LRGDSVIIV 99
+RGDSV ++
Sbjct: 68 VRGDSVTLI 76
>gi|159111944|ref|XP_001706202.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
gi|157434296|gb|EDO78528.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
Length = 124
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ R+ + + G ++A+DRH N+V E W E + ++R L
Sbjct: 64 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 112
Query: 92 RGDSVIIVLRN 102
RGD+VI+V+ N
Sbjct: 113 RGDNVIMVVSN 123
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETLRTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 14/69 (20%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLI ++N L G++R+FD+H N+VL++ E+ + R + +
Sbjct: 16 QVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTVV 61
Query: 91 LRGDSVIIV 99
+RGD+V+++
Sbjct: 62 IRGDTVVLI 70
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ + K + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETLRTIKKQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V + R +++L GR+ A+D HCN+VL V E ++ + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEMLF 81
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
Length = 96
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + K + + +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVDDEDDEDVKTVSKKSE----MLFV 81
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 82 RGDSVVLI 89
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum
gloeosporioides Nara gc5]
Length = 96
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V + R +++L GR+ A+D HCN+VL V E ++ + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEMLF 81
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L +I ++ + +++ ++GR AFDRH N+VL + E PK G+ +++ ++ R
Sbjct: 10 LNYINYRMRVTLIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEE---RDQRR 66
Query: 85 FISKMFLRGDSVI 97
+ + LRGD VI
Sbjct: 67 VLGLVLLRGDEVI 79
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KG KK N++
Sbjct: 10 LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGNKK---TNEER 64
Query: 84 ---RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 65 EERRTLGLVLLRGEEVI 81
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R + + G ++AFD HCN+VL + E EL G+ K+ ++R +F
Sbjct: 17 RVYVKLRGARAMEGVLQAFDSHCNIVLSDAVETIYELV---DGELKS----QERASEMIF 69
Query: 91 LRGDSVIIV 99
+RGDSV ++
Sbjct: 70 VRGDSVTLI 78
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V + R +++L GR+ A+D HCN+VL +V E ++ + + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYVVDEDDDEEEAKTIS----RKSEMLF 81
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++L G ++AFD HCN+VL + E EL G+ K+ ++ +F
Sbjct: 17 RVYVKLRGARELTGTLQAFDSHCNIVLSDAVESIYELV---DGELKS----TEKSSEMVF 69
Query: 91 LRGDSVIIV 99
+RGDSV ++
Sbjct: 70 VRGDSVTLI 78
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRR 67
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRR 67
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ RNNK + G ++ FD H N+ LEN ++ E P I K+ L
Sbjct: 20 VLLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP---------------IGKVLL 64
Query: 92 RGDSVIIV 99
RGD+++ +
Sbjct: 65 RGDNILAI 72
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGKKKALPVN-KDRFIS 87
V + R +++L G + A+D H N++L +V E + ++ G+G++ VN R +
Sbjct: 22 VFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGAGEGQQT---VNMAKRKME 78
Query: 88 KMFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 79 MLFVRGDGVILV 90
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KK + R
Sbjct: 10 LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGSKKTKEDREERR 68
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 69 TLGLVLLRGEEVI 81
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + + + R +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYITDEDDEDESEQEVRTVSRKSEMLFV 85
Query: 92 RGDSVIIVLRNPK 104
RGDSV+++ P+
Sbjct: 86 RGDSVVLISPVPQ 98
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KG KK N++
Sbjct: 10 LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGNKK---TNEER 64
Query: 84 ---RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 65 EERRTLGLVLLRGEEVI 81
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRR 67
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 97
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+VLI R ++ L G + A+D H NMVL +V E T + + + R +F
Sbjct: 23 RVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVEPAANPDDEPIIRTVKRNCEMLF 82
Query: 91 LRGDSVIIV 99
+RGD V++V
Sbjct: 83 VRGDGVVLV 91
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++L+G ++AFD HCN+VL + E EL G+ K+ ++ +F
Sbjct: 17 KVYVKLRGARELVGILQAFDSHCNIVLSDAVETIYELV---DGELKS----NEKTSEMLF 69
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 70 VRGDTVTLI 78
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R ++L G ++AFD HCN+VL + E EL G+ K+ N + +F
Sbjct: 17 KIYVKLRGARELSGILQAFDSHCNIVLSDAIETKYELV---DGELKSTERNSEM----LF 69
Query: 91 LRGDSVIIV 99
+RGDSV ++
Sbjct: 70 VRGDSVTLI 78
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM-------WTELPKTGKGKKKALPVNKD 83
+V + R ++++ GR+ A+D H NMVL +V E TE + K K +
Sbjct: 27 RVYVKLRGDREIKGRLHAYDSHLNMVLSDVEETVYIVDIDETEEHISTKKKHSEM----- 81
Query: 84 RFISKMFLRGDSVIIV 99
+F+RGDSVI++
Sbjct: 82 -----IFVRGDSVILI 92
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G ++++D+H N+VL + E+ ++ G+GKK + + +
Sbjct: 17 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GEGKK----------MGTIVI 62
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L G++ A+D HCN+VL +V E + + + ++ R +F+
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDDDEEEGDEVKTIS--RKSEMLFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|308162403|gb|EFO64802.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
P15]
Length = 83
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ R+ + + G ++A+DRH N+V E W E + ++R L
Sbjct: 23 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 71
Query: 92 RGDSVIIVLRN 102
RGD+VI+V+ N
Sbjct: 72 RGDNVIMVVSN 82
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ I +NN + G + +FD H N++L N E TG P+N RF +F
Sbjct: 64 RITILLQNNSSVTGLLASFDEHMNIILINAEE-------TGH------PLN--RFFPLLF 108
Query: 91 LRGDSVIIVLR 101
+RGDS+I V R
Sbjct: 109 IRGDSIIFVTR 119
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V + R +++L G++ A+D HCN+VL V E ++T + K + R +F
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDEDDEVKTI----SRKSEMLF 81
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H N+VL +V E+ T + L K R + +F
Sbjct: 23 RIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVEIDDLLFSFLLQTTK-RTVPFLF 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 90
V + R +++L G++ A+D HCN+VL V E ++T + K + R +F
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDDDDELKTI----SRKSEMLF 81
Query: 91 LRGDSVIIV 99
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 11/77 (14%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L++I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK N++
Sbjct: 10 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK-----NEER 62
Query: 84 ---RFISKMFLRGDSVI 97
R + + LRG+ VI
Sbjct: 63 EERRTLGLVLLRGEEVI 79
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 88
+V + R +++L G + A+D H N++L +V E M + + + + + K R I
Sbjct: 22 RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSANGQNTVNIAK-RKIDM 80
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 81 LFVRGDGVILV 91
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+Q+ + + N K+ G++R FD + NMVLE+V E++ + K +++AL +
Sbjct: 29 VQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVK-----KQERRAL--------GTI 75
Query: 90 FLRGDSVIIVLRNP 103
L+GD++ ++ P
Sbjct: 76 LLKGDAMALITAAP 89
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis
subvermispora B]
Length = 184
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V IN + + +G++ AFDRH N+VL E PK G+ +A PV + R +
Sbjct: 19 LKVTIN--DGRAFVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGETEAGPVQEMKRTLGL 76
Query: 89 MFLRGDSVI 97
+ LRG++V+
Sbjct: 77 VILRGETVV 85
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++L G + A+D H N+++ +V E + + L V K R + +F
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPNGQGLQVAK-RKMEMLF 80
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 81 VRGDGVILV 89
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 21/79 (26%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENV----------REMWTELPKTGKGKKKALPV 80
++ + RN ++L GR+ A+D+H NMVL V E + E+ +T K
Sbjct: 28 RIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTVEIDEETYEEVYRTTK-------- 79
Query: 81 NKDRFISKMFLRGDSVIIV 99
R I +F+RGD VI+V
Sbjct: 80 ---RNIPMLFVRGDGVILV 95
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 19/95 (20%)
Query: 8 FSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 67
+++ + QTT+ FW E QV R G++R FD N+V+++ E+ +
Sbjct: 18 YNYLHHQTTV---TFWLYE----QVQTRIR------GKIRGFDEFMNVVIDDAFEIAVD- 63
Query: 68 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 102
PK+GK +K F+ ++ L+GD++ +V+ N
Sbjct: 64 PKSGKESD-----DKAVFLGRIMLKGDNITLVVAN 93
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL V E + + +G++ K + +F+
Sbjct: 27 VFVRLRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEGEETVKTTKKQSDM--LFV 84
Query: 92 RG 93
RG
Sbjct: 85 RG 86
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK--- 88
V + R +++L G++ A+D HCN+VL V E T G + + + IS+
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEE-------TIYGVDEEDDEEEAKTISRKSE 78
Query: 89 -MFLRGDSVIIV 99
+F+RGDSV+++
Sbjct: 79 MLFVRGDSVVLI 90
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
L+V IN + + L G++ AFDRH N+VL + E PK G++ A R + +
Sbjct: 9 LKVTIN--DGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLV 66
Query: 90 FLRGDSVI 97
LRG++V+
Sbjct: 67 ILRGETVV 74
>gi|403214565|emb|CCK69066.1| hypothetical protein KNAG_0B06380 [Kazachstania naganishii CBS
8797]
Length = 83
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM- 89
+V + R + + G ++AFD HCN+VL + E EL G+ + P S+M
Sbjct: 16 RVYVKLRGARSMAGTLQAFDSHCNIVLSDAVETRYELVD-GELRSTERP-------SEMV 67
Query: 90 FLRGDSVIIV 99
F+RGDSV +V
Sbjct: 68 FVRGDSVTLV 77
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK----DRFIS 87
V I R ++++ G + A+D+H NM+L V E T + + A PV R I
Sbjct: 25 VFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLD---ESAAQPVGTLRQVKRQID 81
Query: 88 KMFLRGDSVIIV 99
+F+RGDSV+++
Sbjct: 82 CLFVRGDSVVLL 93
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride
IMI 206040]
Length = 97
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L G++ A+D HCN+VL V E + + + ++ R +F+
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDDDEEESDEVKTIS--RKSEMLFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++L G + A+D H NMVL V E T + + ++ + K R +F
Sbjct: 29 RVYVKLRGDRELTGILHAYDGHLNMVLGEVEETITMVDVNEETLEEVIRTVK-RTFEMLF 87
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 88 VRGDGVILV 96
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 75
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ RNNK + G ++ FD H N+ LEN ++ E P + K+ L
Sbjct: 17 VLLRLRNNKTIQGVLQDFDIHMNLTLENAEDVSEEKPDP---------------LGKVLL 61
Query: 92 RGDSVIIV 99
RGD+++ +
Sbjct: 62 RGDNILAI 69
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G ++++D+H N+VL + E+ ++ G GKK + + +
Sbjct: 20 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GGGKK----------MGTIVI 65
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 66 RGDNVILI 73
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 88
+V + R +++L G + A+D H N++L +V E M + + K + V K R +
Sbjct: 22 RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGAPEGKGTVNVAK-RKMEM 80
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 81 LFVRGDGVILV 91
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKM 89
V + + + L G + A+D H NM++ +V E + E ++G + R + +
Sbjct: 23 VFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVEPEESGSTVQ-----TMKRAMEML 77
Query: 90 FLRGDSVIIV 99
F+RGDSVI+V
Sbjct: 78 FVRGDSVILV 87
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + G++ + K + +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETVKTIKKQEEM--LFV 85
Query: 92 RG 93
RG
Sbjct: 86 RG 87
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 14/69 (20%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
VLI ++N L G++R+FD+H N+VL++ E+ + R + +
Sbjct: 16 HVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTIV 61
Query: 91 LRGDSVIIV 99
+RGD+V+++
Sbjct: 62 IRGDTVVLI 70
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + G++ + K +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQE--EMLFV 85
Query: 92 RGDS 95
RG S
Sbjct: 86 RGTS 89
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++L+G ++AFD HCN VL + E +L G+ K+ +++ +F
Sbjct: 17 RVYVKLRGARELVGTLQAFDSHCNFVLSDAVETIYQLI---DGELKS----REKSSEMIF 69
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 70 VRGDTVALI 78
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN-KDRFISKM 89
+V + R +++L G + A+D H N++L +V E + + VN R + +
Sbjct: 22 RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDHVEGAPEGHATVNIAKRKMEML 81
Query: 90 FLRGDSVIIV 99
F+RGD VI+V
Sbjct: 82 FVRGDGVILV 91
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + ++ + + + +F+
Sbjct: 26 VYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYVVEESEDDDGEEIVKTVVKKSEMLFV 85
Query: 92 RGDSVIIV 99
RGDSVI++
Sbjct: 86 RGDSVILI 93
>gi|389739317|gb|EIM80511.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 179
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V IN + + L G++ AFDRH N+VL E PK G+ +A P + R +
Sbjct: 19 LKVTIN--DGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKAGEAEAGPEQEMKRTLGL 76
Query: 89 MFLRGDSVIIV 99
+ LRG++V+ +
Sbjct: 77 VILRGETVVSI 87
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++L G + A+D H N++L +V E + + K+ + V K R +F
Sbjct: 36 RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGKETVRVVK-RQSEMLF 94
Query: 91 LRGDSVIIV 99
+RGDSVI+V
Sbjct: 95 VRGDSVILV 103
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96
R +++L+G +R FD + NMVL++V E +T LP GK K I + L G SV
Sbjct: 37 RGDRELVGTLRGFDDYVNMVLDDVTE-YTILPDGGKRVDK---------IESILLNGSSV 86
Query: 97 IIVL 100
+++
Sbjct: 87 AMLV 90
>gi|354548424|emb|CCE45160.1| hypothetical protein CPAR2_701720 [Candida parapsilosis]
Length = 90
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 6 IRFSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
++ + Q L L F E+ V++ R ++ G+++ +D HCN+VL + E
Sbjct: 4 VQTEHKQQQEPLDLIRFQLDEY----VIVKLRGAREFKGKLQGYDSHCNLVLSDATETIF 59
Query: 66 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
K P+ K +F+RGDSVI++
Sbjct: 60 ------SDKDGVEPIIK--RTEMVFVRGDSVILI 85
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R
Sbjct: 10 LQHINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRR 67
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R
Sbjct: 10 LQHINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRR 67
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 85
+F+ ++ I ++ ++++G+ AFD+ N+V+ + E +PK KG++ V + R
Sbjct: 7 QFLNYRMRITLQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEE----VEQKRS 62
Query: 86 ISKMFLRGDSVI-IVLRNP 103
+ + +RG+++I IV+ P
Sbjct: 63 LGFLLIRGENIISIVVEGP 81
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++ GR+ A+D+H NM+L +V E+ T + ++ K R + +F
Sbjct: 24 KVYVKLRGDREARGRLHAYDQHLNMILGDVEEVITSTETDEETFEEFTKTTK-RSVPFLF 82
Query: 91 LRGDSVIIV 99
+RGD+V +V
Sbjct: 83 IRGDAVTLV 91
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL V E + + ++ R +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDDEDADEDDLKTIS--RKSEMLFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V +N + + +G++ AFDRH N+VL E PK G+ +A P + R +
Sbjct: 9 LKVTVN--DGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKSGETEAGPAQEMKRTLGL 66
Query: 89 MFLRGDSVI 97
+ LRG++V+
Sbjct: 67 VILRGETVV 75
>gi|448535532|ref|XP_003870996.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis Co 90-125]
gi|380355352|emb|CCG24870.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis]
Length = 91
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 6 IRFSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
++ + Q L L F E+ V++ R ++ G+++ +D HCN+VL + E
Sbjct: 4 VQTEHKQQQEPLDLIRFQLDEY----VIVKLRGAREFKGKLQGYDSHCNLVLSDATETIF 59
Query: 66 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
K P+ K +F+RGDSVI++
Sbjct: 60 ------SDKDGVDPIIK--RTEMVFVRGDSVILI 85
>gi|58259393|ref|XP_567109.1| Sm-like protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134107471|ref|XP_777620.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260314|gb|EAL22973.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223246|gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 95
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM-F 90
VLI R ++ + G + A+D H N+V+ E + T +G+ LP +R ++M F
Sbjct: 24 VLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQP--LPPRIERRTAEMLF 81
Query: 91 LRGDSVII 98
+RGD VI+
Sbjct: 82 VRGDGVIL 89
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V IN + + +G++ AFDRH N+VL E PK G+ +A P+ + R +
Sbjct: 19 LKVTIN--DGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPMQEMKRTLGL 76
Query: 89 MFLRGDSVI 97
+ LRG++V+
Sbjct: 77 VILRGETVV 85
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ RN K L G ++ +D+H N+VLE+ E+ E N + + +
Sbjct: 18 VLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDE--------------NTQNKLGTIVV 63
Query: 92 RGDSVIIV 99
RGDS++++
Sbjct: 64 RGDSIVMI 71
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 28 IVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 87
I Q+ I RNN +L G + ++D H NM++ E T + K K+K +
Sbjct: 15 IAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEE--TSFQEGIKTKRK---------LD 63
Query: 88 KMFLRGDSVIIV 99
++LRGD +I++
Sbjct: 64 ALYLRGDGIILI 75
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 28 IVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 87
I QVLI +NN + G+V +FD H N+VL+N EL G+ K K +
Sbjct: 14 ISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAE----ELDANGELKAK---------LG 60
Query: 88 KMFLRGDSVIIV 99
+ LRG ++I V
Sbjct: 61 TILLRGGNIIFV 72
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + ++ GR++++D+H N+VLE+ E++ + + R + + +
Sbjct: 17 VLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYED--------------GRTRKLGTIVI 62
Query: 92 RGDSVIIV 99
RGD+V+++
Sbjct: 63 RGDTVLLI 70
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
L+V IN + + L G++ AFDRH N+VL + E PK G++ A R + +
Sbjct: 19 LKVTIN--DGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLV 76
Query: 90 FLRGDSVIIV 99
LRG++V+ +
Sbjct: 77 ILRGETVVSI 86
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 28 IVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 87
I +V + R +++L G + A+D H N++L +V E + + + + V K R
Sbjct: 34 ISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGSETVRVVK-RQSE 92
Query: 88 KMFLRGDSVIIV 99
+F+RGDSVI+V
Sbjct: 93 MLFVRGDSVILV 104
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 30 LQVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 83
L LIN R + ++++GR AFDRH N+VL + E PK G ++ +
Sbjct: 8 LLALINYRMRVTVVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEEDR---EQR 64
Query: 84 RFISKMFLRGDSVI 97
R + + LRGD V+
Sbjct: 65 RVLGLVILRGDEVV 78
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
Length = 164
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM------WTELPKTGKGKKKALP 79
+ I ++ I+ + + G++ AFD+H N+VL + E + EL K G + +
Sbjct: 46 DLINFRLQISTLDGRSFTGQLLAFDKHMNLVLADTEEARTTKKSYQELAKAKVGSQ--VK 103
Query: 80 VNKD-RFISKMFLRGDSVIIVL 100
VN+D RF+ + LRG+ V+ V+
Sbjct: 104 VNEDKRFLGLIILRGEQVVSVV 125
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ +N + G++ AFD H N+ LEN E KK A + R + +F+
Sbjct: 21 VLVELKNGHAITGKLVAFDVHINVTLENAEE-----------KKDADTL---RKLGNVFI 66
Query: 92 RGDSVIIV 99
RGD++I++
Sbjct: 67 RGDTIILI 74
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae
RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+V+ +V E + + ++ + + + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVMGDVEETIYVVEEDENEEEIIRTIKRQEEM--LFV 84
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 85 RGDSVVLI 92
>gi|66804949|ref|XP_636207.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
gi|74852215|sp|Q54HH8.1|SMDL_DICDI RecName: Full=Small nuclear ribonucleoprotein Sm D-like protein
gi|60464569|gb|EAL62706.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
Length = 257
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 44 GRVRAFDRHCNMVLENVREMWT---ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 100
G + AFD+H N++L +V E + LP T + P K R+ ++F++GD+V+ V+
Sbjct: 196 GYIIAFDKHMNIILRDVEEEYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
+V + RN+++L G++ A+D+H NMVL +V E+ T
Sbjct: 24 KVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEIIT 58
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
+QVL+ N+K+ G + FD + NMVLENV E E PK + I KM
Sbjct: 35 IQVLM--TNDKEFKGTLIGFDDYVNMVLENVEEFDNEGPKG-------------KVIKKM 79
Query: 90 FLRGDSVIIVL 100
L G V +++
Sbjct: 80 LLNGSQVAMLI 90
>gi|303279124|ref|XP_003058855.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460015|gb|EEH57310.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 403
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 46 VRAFDRHCNMVLENVREMWT--------ELPKTGKG--KKKALPVNKDRFISKMFLRGDS 95
V+AFD++ NM+L++VRE++T + K GK K K ++R + ++FLRG+
Sbjct: 308 VKAFDKYMNMLLQDVREIYTVRLKHRVEYVDKNGKTRYKIKHRLEGRERTMDQVFLRGEQ 367
Query: 96 VIIV 99
++ V
Sbjct: 368 IVTV 371
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 11/77 (14%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L +I ++ I + ++++GR AFDRH N+VL + E + +LP KK L +DR
Sbjct: 10 LAYINYRMRITIVDGRQIVGRFMAFDRHMNLVLSDAEE-FRKLP-----PKKGL-TEEDR 62
Query: 85 FISK----MFLRGDSVI 97
+ + + LRG+ V+
Sbjct: 63 AVRRVLGFILLRGEEVV 79
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R ++++ G + A+D H N++L +V E + + + + K R + +F
Sbjct: 22 RVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPNGQGVVNIAK-RKMDMLF 80
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 81 VRGDGVILV 89
>gi|398366287|ref|NP_013543.3| Lsm3p [Saccharomyces cerevisiae S288c]
gi|12230246|sp|P57743.1|LSM3_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm3; AltName:
Full=SmX4 protein
gi|151940954|gb|EDN59336.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405474|gb|EDV08741.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256271118|gb|EEU06213.1| Lsm3p [Saccharomyces cerevisiae JAY291]
gi|259148415|emb|CAY81662.1| Lsm3p [Saccharomyces cerevisiae EC1118]
gi|285813843|tpg|DAA09739.1| TPA: Lsm3p [Saccharomyces cerevisiae S288c]
gi|349580131|dbj|GAA25292.1| K7_Lsm3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297940|gb|EIW09039.1| Lsm3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 89
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R + L+G ++AFD HCN+VL + E +L + + R +F
Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVF 67
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 68 IRGDTVTLI 76
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V IN + + L G++ AFDRH N+VL + E PK G+ + P + R +
Sbjct: 19 LKVTIN--DGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGETETPPEQEMKRALGL 76
Query: 89 MFLRGDSVI 97
+ LRG++V+
Sbjct: 77 VILRGETVV 85
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
+ + RN+++L GR+ A+D+H NM+L +V E T
Sbjct: 23 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVT 56
>gi|170785183|pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
gi|170785184|pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
Length = 96
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R + L+G ++AFD HCN+VL + E +L + + R +F
Sbjct: 22 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVF 74
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 75 IRGDTVTLI 83
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V IN + + +G++ AFDRH N+VL E PK G+ +A P+ + R +
Sbjct: 19 LKVTIN--DGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGETEAGPMQEMKRTLGL 76
Query: 89 MFLRGDSVI 97
+ LRG++V+
Sbjct: 77 VILRGETVV 85
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 38 NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 97
N+K+ G++ FD NMVLE+VRE+ ++ V D+ I KM L G V
Sbjct: 22 NDKEFTGKLVGFDDFVNMVLEDVREIDSD-------------VKSDKVIKKMLLNGGQVA 68
Query: 98 IVL 100
+++
Sbjct: 69 MII 71
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + V K R I K
Sbjct: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRVKK-RSIEKWHQ 82
Query: 92 RGDS 95
+ DS
Sbjct: 83 KSDS 86
>gi|405118137|gb|AFR92912.1| hypothetical protein CNAG_00781 [Cryptococcus neoformans var.
grubii H99]
Length = 95
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM-F 90
VLI R ++ + G + A+D H N+V+ E + T +G+ LP +R ++M F
Sbjct: 24 VLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHIVDVTEEGQP--LPPRVERRSAEMLF 81
Query: 91 LRGDSVII 98
+RGD VI+
Sbjct: 82 VRGDGVIL 89
>gi|401624580|gb|EJS42636.1| lsm3p [Saccharomyces arboricola H-6]
Length = 89
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R + L+G ++AFD HCN+VL + E +L + + R +F
Sbjct: 15 RVYIKLRGARSLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVF 67
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 68 VRGDTVTLI 76
>gi|367054976|ref|XP_003657866.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
gi|347005132|gb|AEO71530.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
Length = 179
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++++ R+ +KLLG +R++D+ N+VL++ +E P T + + L + DR +
Sbjct: 53 KLMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVPPGTAPNQTRGLYADIDRGL--FL 110
Query: 91 LRGDSVIIV 99
+RG++V+++
Sbjct: 111 VRGENVLLM 119
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 88
+V + R +++++G + A+D H N++L +V E M + + + + V K R ++
Sbjct: 22 RVFVKLRGDREVVGILHAYDGHMNLILSDVEETIMIVDPIEGSPNSEGTVKVAK-RKMNM 80
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 81 LFVRGDGVILV 91
>gi|422293907|gb|EKU21207.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana
CCMP526]
gi|422294090|gb|EKU21390.1| hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana
CCMP526]
Length = 162
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 9 SFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
S + T L+ C+ + +V+ V + GR+R FDRH N+VLE E
Sbjct: 84 SLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAEE 137
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++L G + A+D H N++L +V E + + + + V K R +F
Sbjct: 31 RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDENGHETVRVVK-RQSEMLF 89
Query: 91 LRGDSVIIV 99
+RGDSVI+V
Sbjct: 90 VRGDSVILV 98
>gi|401838766|gb|EJT42227.1| LSM3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 89
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R + L+G ++AFD HCN+VL + E +L + + R +F
Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVF 67
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 68 VRGDTVTLI 76
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI +++ L G++R++D+H N+VL++V E+ G+G R + + +
Sbjct: 17 VLIKIKDDITLRGKLRSYDQHLNIVLDDVEEI-------GEGGST-------RKLGTVVI 62
Query: 92 RGDSVIIV 99
RGD+V+ +
Sbjct: 63 RGDTVVFI 70
>gi|302652112|ref|XP_003017916.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
gi|291181501|gb|EFE37271.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
Length = 193
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 15 TTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 74
+ L+L+ W ++ + ++ ++L+G+ AFDRH N+VL + E+ PK GK +
Sbjct: 7 SKLLLYINW-------RIRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQ 59
Query: 75 KK 76
++
Sbjct: 60 EE 61
>gi|365759243|gb|EHN01044.1| Lsm3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 126
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R + L+G ++AFD HCN+VL + E +L + + R +F
Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVF 67
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 68 VRGDTVTLI 76
>gi|326516156|dbj|BAJ88101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 123
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 48 AFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
A+D+H NM+L +V E+ T + + ++ + +K R I +F+RGD VI+V
Sbjct: 66 AYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSK-RTIPYLFVRGDGVILV 116
>gi|302497389|ref|XP_003010695.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
gi|291174238|gb|EFE30055.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
Length = 193
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++L G + A+D H N++L +V E + + + + V K R +F
Sbjct: 40 RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGAETVRVVK-RQSEMLF 98
Query: 91 LRGDSVIIV 99
+RGDSVI+V
Sbjct: 99 VRGDSVILV 107
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + +++ G+++++D H N+VLEN E+ + R + + +
Sbjct: 17 VLVKLKGGREIRGQLKSYDYHLNLVLENAEEIRG---------------TRTRQLGTIIV 61
Query: 92 RGDSVIIVLRNP 103
RGD+VI+V P
Sbjct: 62 RGDNVILVSPAP 73
>gi|321250515|ref|XP_003191834.1| sm-like protein [Cryptococcus gattii WM276]
gi|317458301|gb|ADV20047.1| Sm-like protein, putative [Cryptococcus gattii WM276]
Length = 95
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM-F 90
VLI R ++ + G + A+D H N+V+ E + T +G+ LP +R ++M F
Sbjct: 24 VLIKLRGDRIVTGILHAYDAHMNVVVSQAEESIHIIDVTEEGQP--LPPRTERRNAEMLF 81
Query: 91 LRGDSVIIV 99
+RGD VI++
Sbjct: 82 VRGDGVILL 90
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 85
E + VL+ + +K + G ++++D H N+VLEN E+ ++ R
Sbjct: 15 ESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSD--------------GSTRK 60
Query: 86 ISKMFLRGDSVIIV 99
+ + +RGD+VI+V
Sbjct: 61 VGTIIIRGDNVILV 74
>gi|123493455|ref|XP_001326296.1| Sm protein [Trichomonas vaginalis G3]
gi|121909208|gb|EAY14073.1| Sm protein [Trichomonas vaginalis G3]
Length = 84
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + + ++L G + A+D H N++L +V E L K G K +PV +++ I +F+
Sbjct: 19 VKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNG----KFIPVRQNQ-IDMLFV 73
Query: 92 RGDSVI 97
RGD ++
Sbjct: 74 RGDRIV 79
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 34 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93
+ ++ + L G++ AFDRH N+VL + E PK G++ A R + + LRG
Sbjct: 11 VTIQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELKRTLGLVILRG 70
Query: 94 DSVIIV 99
++V+ +
Sbjct: 71 EAVVSI 76
>gi|119478785|ref|XP_001259441.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
gi|119407595|gb|EAW17544.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
Length = 94
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI +++ L G++R+FD+H N+VL++ E+ G G + L + +
Sbjct: 17 VLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIR------GDGSVRKL--------GTVVI 62
Query: 92 RGDSVIIV 99
RGD+V+++
Sbjct: 63 RGDTVVLI 70
>gi|121713870|ref|XP_001274546.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
gi|119402699|gb|EAW13120.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
Length = 74
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI + K + G + FD+H N++LE+ E+ E + R + + +
Sbjct: 18 VLIKLKGGKAIRGNLLGFDQHMNLLLESSEEIPVE--------------GETRTLGTIVV 63
Query: 92 RGDSVIIVLRNP 103
RGD+V+I+ P
Sbjct: 64 RGDNVVIISPPP 75
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
+ + RN++++ GR+ AFD+H NM+L V E T
Sbjct: 32 IYVKMRNDREVRGRLHAFDQHLNMILSQVEETVT 65
>gi|302792292|ref|XP_002977912.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
gi|302810500|ref|XP_002986941.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300145346|gb|EFJ12023.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300154615|gb|EFJ21250.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
Length = 97
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 21/79 (26%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVR----------EMWTELPKTGKGKKKALPV 80
++ + R +++L G++ A+D+H NM+L V E + E+ KT K
Sbjct: 23 RIYVKLRADRELRGKLHAYDQHLNMILGEVEEVVTTTEIDDETYEEIVKTTK-------- 74
Query: 81 NKDRFISKMFLRGDSVIIV 99
R + +F+RGD VI+V
Sbjct: 75 ---RQVPYLFVRGDGVILV 90
>gi|70997292|ref|XP_753396.1| U6 small nuclear ribonucleoprotein (Lsm3) [Aspergillus fumigatus
Af293]
gi|66851032|gb|EAL91358.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus Af293]
gi|159126877|gb|EDP51993.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 76
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI + K + G + FD+H N++LE+ E+ E K + + +
Sbjct: 18 VLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEILEE--------------GKSNDLGTIVV 63
Query: 92 RGDSVIIVLRNPK 104
RGD+V+I+ PK
Sbjct: 64 RGDNVVIISPPPK 76
>gi|258567110|ref|XP_002584299.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905745|gb|EEP80146.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 135
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris
suum]
Length = 165
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 34 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93
+ ++++ +G RAFD+H N++L E PK G KK+ P + R + + LRG
Sbjct: 19 VALQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPG---KKSAPEEEMRTLGLVLLRG 75
Query: 94 DSVI 97
+ ++
Sbjct: 76 EHIV 79
>gi|323447461|gb|EGB03380.1| hypothetical protein AURANDRAFT_72740 [Aureococcus
anophagefferens]
Length = 129
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+VLI R+ + L+G +R+FD+ N+VLE+ E +P + V D +
Sbjct: 23 KVLIILRDGRNLVGVMRSFDQFSNVVLEDTYERRVVIPD----DESQPAVYGDVPLGLYV 78
Query: 91 LRGDSVII 98
+RGDSV++
Sbjct: 79 IRGDSVVL 86
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 85
E++ V + + + + G +++FD+H N+VLEN E+ T +G R
Sbjct: 16 EYLNASVYVKLKGGEGVKGVLKSFDQHLNLVLENAEEL------TERG---------SRS 60
Query: 86 ISKMFLRGDSVIIV 99
+ + +RGDS++ +
Sbjct: 61 LGTVLVRGDSIVAI 74
>gi|393216136|gb|EJD01627.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 96
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN-KDRFISKM 89
+V + R +++L G + A+D H N++L +V E L + + A +N R + +
Sbjct: 22 RVFVKLRGDRELNGVLHAYDGHMNLILSDVEETIM-LVDSNEAAPPAGRINVAKRKMDML 80
Query: 90 FLRGDSVIIV 99
F+RGD VI+V
Sbjct: 81 FVRGDGVILV 90
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI + NK + G + FD+H N++L++ E+ E G+ K L + +
Sbjct: 18 VLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAE------GEAKGL--------GSIVV 63
Query: 92 RGDSVIIVLRNP 103
RGD+V+++ P
Sbjct: 64 RGDNVVMISPPP 75
>gi|298711111|emb|CBJ32339.1| U6 snRNA-associated Sm-like protein LSm3 [Ectocarpus siliculosus]
Length = 93
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + CR ++L G++ ++D+H NMVL +V E T + ++ + +K R I +F
Sbjct: 19 RIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSK-RSIEMLF 77
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 78 VRGDVVILV 86
>gi|350639679|gb|EHA28033.1| hypothetical protein ASPNIDRAFT_211308 [Aspergillus niger ATCC
1015]
Length = 723
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|226294169|gb|EEH49589.1| GTP-binding protein AGP-1 [Paracoccidioides brasiliensis Pb18]
Length = 576
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I +V I ++++ +G +AFD+H NM+L + E PK K +++ + R
Sbjct: 8 LQHINYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKR 62
Query: 85 FISKMFLRGDSVI 97
+ + LRG+S++
Sbjct: 63 VLGFVLLRGESIV 75
>gi|67515531|ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gi|40746210|gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R++++L G++ A+D+H NM+L +V E+ T + + ++ + V+ F+ +F
Sbjct: 24 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVSSFAFLPLVF 83
Query: 91 L 91
+
Sbjct: 84 I 84
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 72
L++I ++ + ++++++GR AFDRH N+VL + E PK GK
Sbjct: 10 LQYINFRMRVTLVDSRQIVGRFMAFDRHMNLVLGDSEEFRRLPPKKGK 57
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 27 FIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFI 86
F ++ + + ++L+G+ AFD+H N+VL + E K GKG+++ + R +
Sbjct: 1 FKFFRMRVTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEER----EEKRSL 56
Query: 87 SKMFLRGDSVI 97
+ LRG+SV+
Sbjct: 57 GLVILRGESVV 67
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I +V I ++++ +G +AFD+H NM+L + E PK K +++ + R
Sbjct: 10 LQHINYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKR 64
Query: 85 FISKMFLRGDSVI 97
+ + LRG+S++
Sbjct: 65 VLGFVLLRGESIV 77
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
Length = 78
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI + NK + G + FD+H N++L++ E+ E G K+L + +
Sbjct: 18 VLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAE------GDSKSL--------GSIVV 63
Query: 92 RGDSVIIVLRNP 103
RGD+V+++ P
Sbjct: 64 RGDNVVMISPPP 75
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++L G + A+D H N+++ +V E + + + V K R + +F
Sbjct: 24 RVYVKLRGDRELTGVLHAYDGHMNLIMSDVEESIMIVENPENPENPNVKVAK-RNVEMLF 82
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 83 VRGDGVILV 91
>gi|83315999|ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490948|gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 16/99 (16%)
Query: 19 LFCFWALEFIVL----QVLINCRNNKKLLGRVR---------AFDRHCNMVLENVREMWT 65
LF L++I L ++ + C+ +++L G + A+D H NM+L N +E +
Sbjct: 9 LFYKGPLDYIRLNMEEEIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKEKYK 68
Query: 66 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
++ T + ++ + +R + +F+RGDS+I+V K
Sbjct: 69 QV--TIENNEECVK-QIERNLDMVFVRGDSIILVSSAAK 104
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96
+NN + G + +FD H N++L N E L +RF + +RGDS+
Sbjct: 70 QNNSSITGLLASFDEHMNLILINAEETGHSL---------------NRFFPLLVIRGDSI 114
Query: 97 IIVLR 101
I V R
Sbjct: 115 IFVTR 119
>gi|367008820|ref|XP_003678911.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
gi|359746568|emb|CCE89700.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
Length = 93
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 8 FSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 67
F + QT L FW E QV I R G++ FD N+V+++ E+ +
Sbjct: 16 FDYLQQQT---LVTFWLFE----QVGIRIR------GKISGFDEFMNVVIDDALEIPVD- 61
Query: 68 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
PKTG + K R + K+ L+GD++ ++
Sbjct: 62 PKTG-----VEDIEKGRKLGKILLKGDNITLI 88
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96
+NN + G + +FD H N++L N E L +RF + +RGDS+
Sbjct: 76 QNNSSITGLLASFDEHMNLILINAEETGHSL---------------NRFFPLLVIRGDSI 120
Query: 97 IIVLR 101
I V R
Sbjct: 121 IFVTR 125
>gi|440474314|gb|ELQ43063.1| hypothetical protein OOU_Y34scaffold00174g28 [Magnaporthe oryzae
Y34]
Length = 78
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 24 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 54
>gi|367035444|ref|XP_003667004.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
gi|347014277|gb|AEO61759.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ ++++ R+ +KLLG +R++D+ N+VL++ +E P T + + L + DR
Sbjct: 27 LDLTDKKLMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVAPGTVPNQPRGLYADIDR 86
Query: 85 FISKMFLRGDSVIIV 99
+ +RG++V+++
Sbjct: 87 GL--FLVRGENVLLL 99
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-D 83
L ++ ++ + +N++L+G++ AFDRH N+VL + E K +A+P +
Sbjct: 2 LSLVLWRIRVTLNDNRQLVGQMLAFDRHMNLVLADCEEFRRVKQKKKSADDEAVPSQELK 61
Query: 84 RFISKMFLRGDSVI 97
R + + LRG+ ++
Sbjct: 62 RSLGLVILRGEMIV 75
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
Length = 78
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI + NK + G + FD+H N++L++ E+ E G K L + +
Sbjct: 18 VLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAE------GDSKGL--------GTIVV 63
Query: 92 RGDSVIIVLRNP 103
RGD+V+++ P
Sbjct: 64 RGDNVVMISPPP 75
>gi|393243225|gb|EJD50740.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 183
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD---RFI 86
L+V +N + + L+G + AFDRH N+VL + E PK G+ P + R +
Sbjct: 19 LKVTLN--DGRALVGHMLAFDRHMNLVLADCEEFRRVRPKKKAGESSEGPAPEQEIKRTL 76
Query: 87 SKMFLRGDSVI 97
+ LRG++V+
Sbjct: 77 GLVILRGETVV 87
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 15 TTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 74
+ L+L+ W + + ++ ++L+G+ AFDRH N+VL + E+ PK GK +
Sbjct: 7 SKLLLYINWRMRVTI-------QDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKTQ 59
Query: 75 KK 76
++
Sbjct: 60 EE 61
>gi|380493327|emb|CCF33959.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI + K + G + FD+H N++L++ E+ TE G K+L + +
Sbjct: 18 VLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPTE------GNSKSL--------GTIVV 63
Query: 92 RGDSVIIVLRNP 103
RGD+V+++ P
Sbjct: 64 RGDNVVMISPPP 75
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
Length = 179
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89
++V IN + ++L+G++ AFDRH N+VL E PK G++ R + +
Sbjct: 19 IKVTIN--DGRQLVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQPEQEVKRALGLV 76
Query: 90 FLRGDSVI 97
LRG++V+
Sbjct: 77 ILRGETVV 84
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 21 CFWAL-----EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 63
CF L + I QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 8 CFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 21 CFWAL-----EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 63
CF L + I QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 8 CFATLGATLQDSIGKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEI 55
>gi|350291326|gb|EGZ72540.1| hypothetical protein NEUTE2DRAFT_158467 [Neurospora tetrasperma
FGSC 2509]
Length = 163
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|336469053|gb|EGO57215.1| hypothetical protein NEUTE1DRAFT_121723 [Neurospora tetrasperma
FGSC 2508]
Length = 168
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 21 CFWAL-----EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 63
CF L + I QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 8 CFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + R +++L G++ A+D+H NMVL V E T + +++ + + +F+
Sbjct: 33 IYVKMRGDRELRGKLHAYDQHMNMVLGEVEESITVVHLDENEDEESSEIVTKNY-EMLFV 91
Query: 92 RGDSVIIV 99
RGD VI+V
Sbjct: 92 RGDGVILV 99
>gi|85090627|ref|XP_958507.1| hypothetical protein NCU09512 [Neurospora crassa OR74A]
gi|28919876|gb|EAA29271.1| predicted protein [Neurospora crassa OR74A]
Length = 168
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|388582050|gb|EIM22356.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 34 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93
++CR L GR+ FD + N++L++V E++ GKK++ P N + ++ L+G
Sbjct: 34 VDCR----LEGRIIGFDEYMNVILDDVEEVFY-------GKKQSQPRNS---LGRILLKG 79
Query: 94 DSVIIV 99
D++ ++
Sbjct: 80 DNITLI 85
>gi|14596019|gb|AAK68737.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 135
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 31 QVLINCRNNKKLLGRVR 47
QVLINCRNN+KLLGRVR
Sbjct: 36 QVLINCRNNRKLLGRVR 52
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 29 VLQVL---INC--RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 83
+LQ++ I C ++ + +G +AFD+H N++L E + + K A P +
Sbjct: 9 LLQIINYRIRCILQDGRTFIGTFKAFDKHMNLILSECDEY-----RKYRTKGDAPPREEK 63
Query: 84 RFISKMFLRGDSVIIV 99
R + + LRGDSV+ V
Sbjct: 64 RTLGFVLLRGDSVVTV 79
>gi|392333626|ref|XP_003752950.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
gi|392353940|ref|XP_003751639.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
Length = 177
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 15/76 (19%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKT-----GKGKKKALPVNKD 83
Q+ + RN+++L GR+ +D+H NM+L + E M E+ + K K +P+
Sbjct: 28 QICMKTRNDRELSGRLHVYDQHLNMILGDAEETVMMIEIDEETYEEIDKSTKXNIPM--- 84
Query: 84 RFISKMFLRGDSVIIV 99
+F++GD V+
Sbjct: 85 -----LFIQGDDVLFA 95
>gi|336364678|gb|EGN93033.1| hypothetical protein SERLA73DRAFT_146187 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386725|gb|EGO27871.1| hypothetical protein SERLADRAFT_383548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 88
+V + R ++++ G + A+D H N++L +V E M ++ + +++A+ + K R +
Sbjct: 22 RVYVKLRGDREVTGILHAYDGHMNLILSDVEETIMIVDVDAPLE-ERRAVKMAK-RKMEM 79
Query: 89 MFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 80 LFVRGDGVILV 90
>gi|350416213|ref|XP_003490876.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Bombus
impatiens]
Length = 223
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 25/96 (26%)
Query: 31 QVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWTE----------LPKTGKGKKK 76
+V + RN + + G V A FD+H N+ LE+ E+WT P K K+
Sbjct: 126 RVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKRKAPALGAPSGVKRKED 185
Query: 77 ALP---VNK--------DRFISKMFLRGDSVIIVLR 101
P V K +R + +M LRG+ V I+++
Sbjct: 186 TAPKVVVKKIEGKEETLERHVPQMLLRGEQVAIIVK 221
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 14/75 (18%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
LE + VLI + +++ G+++++D+H N+VL++ E+ + R
Sbjct: 10 LEHLGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIKED--------------GSTR 55
Query: 85 FISKMFLRGDSVIIV 99
+ + +RGD+VI++
Sbjct: 56 KLGTIVIRGDTVILI 70
>gi|340711443|ref|XP_003394285.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Bombus
terrestris]
Length = 223
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 25/96 (26%)
Query: 31 QVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWTE----------LPKTGKGKKK 76
+V + RN + + G V A FD+H N+ LE+ E+WT P K K+
Sbjct: 126 RVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKRKAPALGAPSGVKRKED 185
Query: 77 ALP---VNK--------DRFISKMFLRGDSVIIVLR 101
P V K +R + +M LRG+ V I+++
Sbjct: 186 TAPKVVVKKIEGKEETLERHVPQMLLRGEQVAIIVK 221
>gi|342321540|gb|EGU13473.1| Hypothetical Protein RTG_00195 [Rhodotorula glutinis ATCC 204091]
Length = 97
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 89
+V + R +++L G + A+D H NM+L V E ++ G V ++ +
Sbjct: 20 RVFVKLRGDRELRGVLHAYDGHMNMILSEVEETIYVVDADEASGDNVVRTVKRN--CDML 77
Query: 90 FLRGDSVIIV 99
F+RGD V++V
Sbjct: 78 FVRGDGVVLV 87
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I +V I ++++ +G +AFD+H N++L + E PK K ++ + R
Sbjct: 9 LQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKR 64
Query: 85 FISKMFLRGDSVI 97
+ + LRG++++
Sbjct: 65 VLGFVLLRGENIV 77
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I +V I ++++ +G +AFD+H N++L + E PK K ++ + R
Sbjct: 138 LQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKR 193
Query: 85 FISKMFLRGDSVI 97
+ + LRG++++
Sbjct: 194 VLGFVLLRGENIV 206
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + K + G ++++D H N+VLEN E+ + R + + +
Sbjct: 23 VLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGTIVI 68
Query: 92 RGDSVIIV 99
RGD+VI+V
Sbjct: 69 RGDNVILV 76
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 76
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ RN + + G +R FD H N+ LE+ ++ E K + K+ L
Sbjct: 17 VLLRLRNTRTVQGTLRDFDIHMNLTLEDAEDVTEE---------------KHEKLGKILL 61
Query: 92 RGDSVIIV 99
RGD+++ V
Sbjct: 62 RGDNILAV 69
>gi|342872477|gb|EGU74840.1| hypothetical protein FOXB_14644 [Fusarium oxysporum Fo5176]
Length = 179
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L G++ A+D HCN+VL V E
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|357126031|ref|XP_003564692.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Brachypodium distachyon]
Length = 114
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 48 AFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
A+D+H NM+L +V E+ T + + ++ + + R I +F+RGD VI+V
Sbjct: 57 AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLFVRGDGVILV 107
>gi|242043028|ref|XP_002459385.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
gi|241922762|gb|EER95906.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
Length = 262
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E
Sbjct: 10 LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 85
E I VLI + NK + G + FD+H N++L+ E+ ++ G +L
Sbjct: 12 ESINKTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSD------GDSNSL------- 58
Query: 86 ISKMFLRGDSVIIVLRNP 103
+ +RGD+V+++ P
Sbjct: 59 -GSLVVRGDNVVMISPPP 75
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L +I ++ + + ++++GR AFDRH N+VL + E PK G +++ R
Sbjct: 10 LAYINYRMRVTIVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPPKKGLTEEER---QVRR 66
Query: 85 FISKMFLRGDSVI 97
+ + LRG+ V+
Sbjct: 67 VLGFLLLRGEEVV 79
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + K + G ++++D H N+VLEN E+ + R + + +
Sbjct: 17 VLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGTIVI 62
Query: 92 RGDSVIIV 99
RGD+VI+V
Sbjct: 63 RGDNVILV 70
>gi|406867312|gb|EKD20350.1| U6 snRNP-associated protein Lsm3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 97
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D HCN+VL +V E + + ++ ++K + +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETVYVVEEDEDEEETVKTIHKKSEM--LFV 83
Query: 92 RGDSVIIV 99
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|412991162|emb|CCO16007.1| predicted protein [Bathycoccus prasinos]
Length = 246
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 31 QVLINCRNNKKLLG----RVRAFDRHCNMVLENVREMWTELPK------TGKGKKKA--- 77
+V I RN + + G + AFD++ N V ++ E ++ + GKG+ K
Sbjct: 129 RVKIVTRNERGVRGCMECNISAFDKYFNFVAHDIEERYSVRVRKEKEYVNGKGETKTRRR 188
Query: 78 -LPVNKDRFISKMFLRGDSVIIV 99
+ ++R +S+MFLRG+SV++V
Sbjct: 189 RVIEQRERKVSQMFLRGESVVLV 211
>gi|322711294|gb|EFZ02868.1| U6 snRNP-associated protein Lsm3 [Metarhizium anisopliae ARSEF
23]
Length = 85
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L G++ A+D HCN+VL +V E
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGDVEE 56
>gi|392589852|gb|EIW79182.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 178
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISK 88
L+V IN + + +G++ AFDRH N+V+ E PK G+ + P + R +
Sbjct: 19 LKVTIN--DGRAFIGQMLAFDRHMNLVIAECEEFRRVRPKKKAGETETPPEQEMKRTLGL 76
Query: 89 MFLRGDSVIIV 99
+ LRG++V+ +
Sbjct: 77 VILRGETVVSI 87
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 48 AFDRHCNMVLENVREMWTELPKTGKGKKKALPV-------------NKDRFISKMFLRGD 94
AFD+H N+VL +V E +T L + + K A ++ R + ++F+RGD
Sbjct: 143 AFDKHMNLVLRDVEEQYTVLLQVQRVKPPAPGSSGLERTRWVRQQEHRRRQLRQVFVRGD 202
Query: 95 SVIIVLRNP 103
SV++V P
Sbjct: 203 SVVLVSAGP 211
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 75
RN+K+++G + FD NMVLE+V TE T GKK
Sbjct: 24 RNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKK 58
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ R + + G++++FD+H N+VLE E+ ++ R + + +
Sbjct: 17 VLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSD--------------GSTRKLGTLVI 62
Query: 92 RGDSVIIV 99
RGD+V+++
Sbjct: 63 RGDNVVLI 70
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I ++ I ++++ +G +AFD+H N++L + E PK K ++ ++ R
Sbjct: 2 LQHINYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRTKPKNSKEAER----DEKR 57
Query: 85 FISKMFLRGDSVI 97
+ + LRG +++
Sbjct: 58 SLGFVLLRGQNIV 70
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VLI + + G++R++D+H N+VL++ E+ G G + L + +
Sbjct: 18 VLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEVR------GDGSSRKL--------GTLVI 63
Query: 92 RGDSVIIV 99
RGD+V+++
Sbjct: 64 RGDTVVLI 71
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 9/75 (12%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L++I ++ ++ + + ++G++ AFD+H N+VL + E + +L K K +K+AL
Sbjct: 10 LQYINYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEE-FRKLKKQDKEEKRAL------ 62
Query: 85 FISKMFLRGDSVIIV 99
+ LRG+SVI +
Sbjct: 63 --GLVLLRGESVITM 75
>gi|307169174|gb|EFN61990.1| U7 snRNA-associated Sm-like protein LSm11 [Camponotus floridanus]
Length = 116
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 24/96 (25%)
Query: 30 LQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT-----ELPKTGKGKKKALPV 80
+++ + RN + + G V A FD+H N+ LE+ E+W+ + P G K
Sbjct: 19 IRIRVYTRNARGIRGHVEAYVVAFDKHWNLALEDCYEVWSRKVKRKAPVLGADAVKVEAA 78
Query: 81 NK---------------DRFISKMFLRGDSVIIVLR 101
N +R + +M LRG+ V I+++
Sbjct: 79 NGIPKTVIRKERKMETLERHVPQMLLRGEQVAIIVK 114
>gi|193582435|ref|XP_001943900.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like
[Acyrthosiphon pisum]
Length = 217
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 11 RNSQTTLMLFCFWALEF-IVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 69
R + + LFC+ + ++ ++ R + + G + AFD+H N+V+++V E+WT
Sbjct: 106 RGPLSRIALFCYAKKRVKVYIRSAVSVRGHCE--GYIIAFDKHWNLVMDDVDEVWTR--- 160
Query: 70 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 102
K K K+L + R + + +VI +R
Sbjct: 161 --KNKYKSLAIGDARSLDDPVEKPYTVIKKIRG 191
>gi|359417782|ref|ZP_09209851.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
gi|358031875|gb|EHK00710.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
Length = 78
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 15/62 (24%)
Query: 38 NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 97
N+ + G ++AFD+H N+ LEN R + TE +T G K+FLRGD+V+
Sbjct: 29 NDVTVSGELQAFDKHLNIWLENAR-VNTEDGQTDYG--------------KLFLRGDNVL 73
Query: 98 IV 99
V
Sbjct: 74 FV 75
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + NK++ G ++++D+H N+VL + E+ N ++ + + +
Sbjct: 17 VLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEIQNN--------------NDEKKMGTIVI 62
Query: 92 RGDSVIIV 99
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|255075507|ref|XP_002501428.1| predicted protein [Micromonas sp. RCC299]
gi|226516692|gb|ACO62686.1| predicted protein [Micromonas sp. RCC299]
Length = 573
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 46 VRAFDRHCNMVLENVREMWT--------ELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 97
++AFD + NMVL++V E +T + + G+ + K ++ R ++++FLRG+ V+
Sbjct: 375 LKAFDVYMNMVLQDVHEAYTVRLRHSVVDPKRPGRTRVKYKLEHRRRHMNQVFLRGEQVV 434
Query: 98 IV 99
+
Sbjct: 435 TI 436
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 75
+ +K+++G +R FD + NMVLE+V TE+ T +GKK
Sbjct: 35 KGDKEIVGTLRGFDVYVNMVLEDV----TEIEDTPEGKK 69
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKT 70
L+F+ ++ + ++ ++L+G+ AFDRH N+VL + E + +LP +
Sbjct: 10 LQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPS 54
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 41 KLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
++ G++R FD N+V++ E+ + GKG+ +A ++ R + ++ L+GD+V ++
Sbjct: 41 RIEGKIRGFDEFMNLVIDEA----VEVKQPGKGQTEADVKDQRRELGQILLKGDNVCLI 95
>gi|298714462|emb|CBJ27484.1| Small nuclear ribonucleoprotein-associated protein B [Ectocarpus
siliculosus]
Length = 217
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L+++ ++ I + + L+G + AFDRH N+VL + E PK KG + A ++++
Sbjct: 10 LQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPK--KGSEAAAGIHEER 67
Query: 84 ---RFISKMFLRGDSV 96
R + + LRG++V
Sbjct: 68 EEKRVLGLVLLRGENV 83
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG--KKKALPVNKDRFIS 87
L+V +N + + L+G++ A+D+H N VL E T K KG + A + R +
Sbjct: 9 LKVTLN--DGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKGSSSEPAPTTQQKRTLG 66
Query: 88 KMFLRGDSVIIV 99
+ LRG++++ V
Sbjct: 67 LVILRGETIVSV 78
>gi|414883666|tpg|DAA59680.1| TPA: small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E
Sbjct: 10 LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|226496711|ref|NP_001140478.1| uncharacterized protein LOC100272538 [Zea mays]
gi|194699658|gb|ACF83913.1| unknown [Zea mays]
gi|195606200|gb|ACG24930.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|414592013|tpg|DAA42584.1| TPA: Small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E
Sbjct: 10 LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|226492272|ref|NP_001148524.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|195620004|gb|ACG31832.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
Length = 263
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
L+FI ++ + ++ ++L+G+ AFDRH N+VL + E
Sbjct: 10 LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|46111709|ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L G++ A+D HCN+VL V E
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|145345876|ref|XP_001417425.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577652|gb|ABO95718.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 145
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD- 83
L FI +V + + + L+G AFDRH N+VL + E PK G V++D
Sbjct: 10 LAFINHRVRVTLVDGRALVGTFTAFDRHVNVVLSDCEEHRKLPPKKG--------VDEDE 61
Query: 84 ----RFISKMFLRGDSVI 97
R + + +RG+ V+
Sbjct: 62 RHVRRVLGFVLVRGEEVV 79
>gi|213407672|ref|XP_002174607.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
gi|212002654|gb|EEB08314.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
Length = 90
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++L GR+ NMVL + E+ T + G +P + +F
Sbjct: 21 RVHVKLRGDRELFGRLH------NMVLGDAEEVITSVEDLVTGTVDGIPKTIRKHSEMLF 74
Query: 91 LRGDSVIIV 99
+RGDSVI++
Sbjct: 75 VRGDSVILI 83
>gi|341038886|gb|EGS23878.1| hypothetical protein CTHT_0005870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 209
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++++ R+ +KL+G +R++D+ N+VL++ +E P T + + L + DR +
Sbjct: 83 KLMVALRDGRKLIGILRSWDQFANLVLQSTKERIFIPPNTMPNQPRGLYADIDRGL--FL 140
Query: 91 LRGDSVIIV 99
+RG++V+++
Sbjct: 141 VRGENVLLL 149
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
+++I +V + ++ + L+G AFD+H N+VL E PKT KG+ + R
Sbjct: 8 MQWIDYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKPKT-KGEPER---QTKR 63
Query: 85 FISKMFLRGDSVIIV 99
+ + +RG++++ +
Sbjct: 64 ILGLVIIRGENIVSI 78
>gi|340520073|gb|EGR50310.1| predicted protein [Trichoderma reesei QM6a]
Length = 75
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L G++ A+D HCN+VL V E
Sbjct: 16 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 46
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 75
RN+K+++G + FD NMVLE+V TE T GKK
Sbjct: 24 RNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKK 58
>gi|239637660|ref|ZP_04678632.1| glutamate N-acetyltransferase/amino-acid acetyltransferase
[Staphylococcus warneri L37603]
gi|239596878|gb|EEQ79403.1| glutamate N-acetyltransferase/amino-acid acetyltransferase
[Staphylococcus warneri L37603]
Length = 397
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 38 NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 92
NNK++L + F CNM+ +R + ++ K G+G K + V D+ ++ R
Sbjct: 236 NNKEILPNTKEFKTFCNMLEHVMRSLAIQIAKDGEGATKLIEVTVDKMTNEKSAR 290
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE----MWTELPKTGKGKKKALPVNKDRFI 86
+V + R +++L G + A+D H N++L +V E + TE +T K+ +
Sbjct: 23 RVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTESNQTTNYAKRKWEM------ 76
Query: 87 SKMFLRGDSVIIV 99
+F+RGD VI+V
Sbjct: 77 --LFVRGDGVILV 87
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 75
RN+K+++G + FD NMVLE+V TE T GKK
Sbjct: 24 RNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKK 58
>gi|256083947|ref|XP_002578196.1| hypothetical protein [Schistosoma mansoni]
gi|353232715|emb|CCD80070.1| hypothetical protein Smp_160100 [Schistosoma mansoni]
Length = 475
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 7 RFSFRNSQTTLM--LFCFWALEFIVLQVLINCRNNKK----LLGRVRAFDRHCNMVLENV 60
RF R Q + + W Q+++ R K+ ++G + AFDR+ N++L+NV
Sbjct: 178 RFHSRRQQQRIFSPMASLWKAMQNQSQIMVMTRGLKEPRASIIGNLVAFDRYWNLILKNV 237
Query: 61 REMWTELPKT---GKGKKKALPVNKDRFISKMFLRGDSVIIVLR 101
E LPK+ G GK +++ + K F R + + L+
Sbjct: 238 TEYSVHLPKSALKGNGKPGRSKKRREQRLRK-FQRNNDALFQLK 280
>gi|116204657|ref|XP_001228139.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
gi|88176340|gb|EAQ83808.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
Length = 182
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ ++++ R+ +KL+G +R++D+ N+VL++ +E P T + + L + DR
Sbjct: 50 LDLTDKKLMLALRDGRKLVGILRSWDQFANLVLQSTKERIFVPPGTAPDQVRGLYADVDR 109
Query: 85 FISKMFLRGDSVIIV 99
+ +RG++V+++
Sbjct: 110 GL--FLVRGENVLLL 122
>gi|428178094|gb|EKX46971.1| hypothetical protein GUITHDRAFT_70214 [Guillardia theta CCMP2712]
Length = 97
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R +++L G++ A+D+H NMVL V E+ T + ++ + + K R I ++
Sbjct: 23 RIYVKMRGDRELRGKLHAYDQHLNMVLGEVEEVVTVVEYDEDTFEEHVKMTK-RNIDMLY 81
Query: 91 LRGDSVIIV 99
+RGD VI+V
Sbjct: 82 VRGDGVILV 90
>gi|326472667|gb|EGD96676.1| small nuclear ribonucleoprotein-associated protein B
[Trichophyton tonsurans CBS 112818]
Length = 187
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 30 LQVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 77
+Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 9 MQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|340344218|ref|ZP_08667350.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519359|gb|EGP93082.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 76
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+L+ RNNK + G ++ FD H N+ LE+ ++ GK K + K+ L
Sbjct: 17 ILLRLRNNKSVRGNLQDFDVHMNLTLEDAEDI-----SDGKTVK----------LGKILL 61
Query: 92 RGDSVIIV 99
RGD+++ V
Sbjct: 62 RGDNILAV 69
>gi|254581938|ref|XP_002496954.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
gi|238939846|emb|CAR28021.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
Length = 93
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 8 FSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 67
F F QT + FW E + ++ G++ FD N+V+E+ E+ +
Sbjct: 16 FGFLQQQTVV---TFWLFEQL----------GTRIRGKISGFDEFMNVVIEDATEIPVD- 61
Query: 68 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
P+TGK +++ + + K+ L+GD++ ++
Sbjct: 62 PQTGKEH-----LDRGKKLGKILLKGDNITLI 88
>gi|297725409|ref|NP_001175068.1| Os07g0166600 [Oryza sativa Japonica Group]
gi|255677541|dbj|BAH93796.1| Os07g0166600 [Oryza sativa Japonica Group]
Length = 261
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKT 70
L+F+ ++ + ++ ++L+G+ AFDRH N+VL + E + +LP +
Sbjct: 10 LQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPS 54
>gi|393794933|ref|ZP_10378297.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 76
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+L+ RNNK + G ++ FD H N+ L+N ++ K +P + ++ L
Sbjct: 17 ILLRLRNNKSVRGSLQDFDIHMNLTLDNAEDI---------SDNKVVP------LGRILL 61
Query: 92 RGDSVIIV 99
RGD+++ V
Sbjct: 62 RGDNILAV 69
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 85
+++ +V ++ ++ +K +G AFDRH N+VL + E L KG K+ P+ R
Sbjct: 10 QWLHYRVRVSIKDGRKFVGTFIAFDRHMNLVLADCEEFRLTL---NKGLKE--PIEVKRT 64
Query: 86 ISKMFLRGDSVI 97
+ + LRG++++
Sbjct: 65 LGFILLRGENIV 76
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 15 TTLMLFCFWAL-EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 73
+ L F A+ +++ VL+ + N+++ G + ++D+H N++LE E+ ++
Sbjct: 5 SHLQANTFKAMADYLNSSVLVKMKGNREVKGILTSYDQHLNLILEKAEELEGKV------ 58
Query: 74 KKKALPVNKDRFISKMFLRGDSVIIV 99
R + + LRGD+VI V
Sbjct: 59 ---------SRPLGLVLLRGDNVIAV 75
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 14/75 (18%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
LE + VLI + +++ G+++++D+H N+VL++ E+ R
Sbjct: 10 LEHLGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIREN--------------GSTR 55
Query: 85 FISKMFLRGDSVIIV 99
+ + +RGD+VI++
Sbjct: 56 KLGTIVIRGDTVILI 70
>gi|42557773|emb|CAF28746.1| hypothetical protein [uncultured crenarchaeote]
Length = 89
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
VL+ + + + G+++ FD+ N+V+ E+ + +K ++ + +
Sbjct: 19 VLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQETQVGDALI 78
Query: 92 RGDSVIIV 99
RGD+VI +
Sbjct: 79 RGDNVITI 86
>gi|308811052|ref|XP_003082834.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
gi|116054712|emb|CAL56789.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
Length = 487
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + R +++ GR+ A+D+H NM+L V E T + ++ K R + +F
Sbjct: 414 RVYVKLRGDREARGRLHAYDQHLNMILGEVEETITSTETDEETFEEFTKTTKRR-VPYLF 472
Query: 91 LRGDSVIIV---LRN 102
+RGD+V +V LRN
Sbjct: 473 IRGDAVTLVSPPLRN 487
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-D 83
L I ++ I + + L G++ AFDRH N+VL + E K G++ P +
Sbjct: 12 LSLINWRLKITLNDGRALTGQMLAFDRHMNLVLADCEEFRRVRAKKKAGEEGPAPEQEIK 71
Query: 84 RFISKMFLRGDSVI 97
R + + LRG+SV+
Sbjct: 72 RSLGLVILRGESVV 85
>gi|296807120|ref|XP_002844176.1| SMB [Arthroderma otae CBS 113480]
gi|238843659|gb|EEQ33321.1| SMB [Arthroderma otae CBS 113480]
Length = 226
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 30 LQVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 77
+Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 9 MQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|327304287|ref|XP_003236835.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
gi|326459833|gb|EGD85286.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
Length = 226
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 30 LQVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 77
+Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 9 MQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|323650499|gb|ADX97330.1| small nuclear ribonucleoprotein [Mangifera indica]
Length = 128
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 6/44 (13%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLEN------VREMWTELP 68
++L+ R+N+KLLG +R+FD+ N+VLE V +++ ++P
Sbjct: 22 KILVLLRDNRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIP 65
>gi|452980005|gb|EME79767.1| hypothetical protein MYCFIDRAFT_81234 [Pseudocercospora fijiensis
CIRAD86]
Length = 100
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 41 KLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
++ G++R FD N+V+++ E+ + GKG+ + ++ R + ++ L+GD+V ++
Sbjct: 42 RIEGKIRGFDEFMNLVIDDA----VEVKQPGKGETEEDVKDQRREVGQILLKGDNVCLI 96
>gi|315045376|ref|XP_003172063.1| SMB [Arthroderma gypseum CBS 118893]
gi|311342449|gb|EFR01652.1| SMB [Arthroderma gypseum CBS 118893]
Length = 207
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 30 LQVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 77
+Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 9 MQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|241959080|ref|XP_002422259.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
gi|223645604|emb|CAX40263.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
Length = 125
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 33 LINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL---PVNKD 83
LIN R +N+ LG + +FD+H N+VL + E + KK PV +
Sbjct: 19 LINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVEPVYEK 78
Query: 84 RFISKMFLRGDSVI 97
R + + LRGD V+
Sbjct: 79 RNLGLIILRGDQVV 92
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 29 VLQVL-----INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 83
+LQ+L I ++ + +G++ AFD+H N+VL E PKT +++ +
Sbjct: 8 ILQLLNHRLKITIQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRPKTKSQQER----EEK 63
Query: 84 RFISKMFLRGDSVI 97
R + + LRG+++I
Sbjct: 64 RSLGLVILRGETII 77
>gi|303314473|ref|XP_003067245.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106913|gb|EER25100.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037539|gb|EFW19476.1| U6 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869885|gb|EAS28419.2| U6 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 98
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVL 57
V + R +++L GR+ A+D HCN+VL
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVL 52
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + ++N+K +G + AFDRH N+VL + E L GK K + R + + L
Sbjct: 16 VRVTLKDNRKFVGTLVAFDRHMNLVLSDCEEFRMTL---GKDKNR---TEIKRTLGFVLL 69
Query: 92 RGDSVI 97
RG++++
Sbjct: 70 RGENIV 75
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+ I +V I ++++ +G +AFD+H N++L + E PK K ++ + R
Sbjct: 10 LQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKR 65
Query: 85 FISKMFLRGDSVI 97
+ + LRG++++
Sbjct: 66 VLGFVLLRGENIV 78
>gi|262089301|gb|ACY24522.1| putative LSM domain protein [uncultured crenarchaeote 57a5]
Length = 104
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 85
E I VL+ + + + G+++ FD+ N+V+ + E+ + + G + ++
Sbjct: 31 ESIGKNVLVKLKGRRSVRGKIKGFDKQMNIVITDATEI---IEQQGNNNSEKKEQEQESQ 87
Query: 86 ISKMFLRGDSVIIV 99
+ + +RGD+VI +
Sbjct: 88 VGEALIRGDNVITI 101
>gi|313218736|emb|CBY43160.1| unnamed protein product [Oikopleura dioica]
Length = 58
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 31 QVLINCRNNKKLLGRVR 47
QVLINCRNN+KL+GRV+
Sbjct: 42 QVLINCRNNRKLMGRVK 58
>gi|238880160|gb|EEQ43798.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 110
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL---PVNK 82
+ I ++ I +N+ LG + +FD+H N+VL + E + KK PV
Sbjct: 3 DLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVEPVYD 62
Query: 83 DRFISKMFLRGDSVI 97
R + + LRGD V+
Sbjct: 63 KRNLGLIILRGDQVV 77
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V + +N +++G++ +D N+VL++ RE+ P +G+ K R + +F
Sbjct: 19 EVTVRLKNGSQIVGKLIVYDEMMNLVLDSAREVD---PASGEVK---------RSVGTLF 66
Query: 91 LRGDSVIIV 99
+RG++V+ V
Sbjct: 67 IRGNNVLFV 75
>gi|322700593|gb|EFY92347.1| U6 snRNP-associated protein Lsm3 [Metarhizium acridum CQMa 102]
Length = 90
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
V + R +++L G++ A+D HCN+VL V E
Sbjct: 26 VFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+++ ++ + + + L+G A+D+H NMVL + E +T K KK + R
Sbjct: 10 LKYMNYRMRVTTEDGRMLVGTFMAYDKHMNMVLSDCEEF-----RTVKAKKGTDEQTQKR 64
Query: 85 FISKMFLRGDSVI 97
+ + LRG++V+
Sbjct: 65 ALGFILLRGENVV 77
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.331 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,436,890,603
Number of Sequences: 23463169
Number of extensions: 49247770
Number of successful extensions: 137232
Number of sequences better than 100.0: 891
Number of HSP's better than 100.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 136129
Number of HSP's gapped (non-prelim): 894
length of query: 104
length of database: 8,064,228,071
effective HSP length: 73
effective length of query: 31
effective length of database: 6,351,416,734
effective search space: 196893918754
effective search space used: 196893918754
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 69 (31.2 bits)