BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034064
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMF
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMF 99
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 100 LRGDSVILVLRNP 112
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMF
Sbjct: 32 QVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMF 91
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VL+NP
Sbjct: 92 LRGDSVILVLKNP 104
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3
SV=1
Length = 118
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 72/73 (98%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+VLRNP
Sbjct: 101 LRGDSVIVVLRNP 113
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 70/73 (95%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMF
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGDSVI+V++NP
Sbjct: 101 LRGDSVILVVKNP 113
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISKMF
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMF 100
Query: 91 LRGDSVIIVLRNP 103
LRGD V++V+R P
Sbjct: 101 LRGDGVVLVVRIP 113
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 7/72 (9%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+FL
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKLFL 96
Query: 92 RGDSVIIVLRNP 103
RGDSVI+VL+ P
Sbjct: 97 RGDSVIVVLKTP 108
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V + R +++L GR+ A+D H NMVL + E+ T K KAL + + +F+
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLFV 80
Query: 92 RGDSVIIV 99
RGDSVI++
Sbjct: 81 RGDSVILI 88
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
+ + RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 92 RGDSVIIV 99
RGD V++V
Sbjct: 88 RGDGVVLV 95
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++ + R +++L G++ A+D+H NM+L +V E + K + ++ + N R I +F
Sbjct: 23 RIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIR-NIKRNIKMLF 81
Query: 91 LRGDSVIIV 99
+RGD VI++
Sbjct: 82 VRGDGVILI 90
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 44 GRVRAFDRHCNMVLENVREMWT---ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 100
G + AFD+H N++L +V E + LP T + P K R+ ++F++GD+V+ V+
Sbjct: 196 GYIIAFDKHMNIILRDVEEEYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
+V I R + L+G ++AFD HCN+VL + E +L + + R +F
Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVF 67
Query: 91 LRGDSVIIV 99
+RGD+V ++
Sbjct: 68 IRGDTVTLI 76
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 14/69 (20%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
VLI+ + N++ G + +D + N+VL+N E+ G+ K + ++
Sbjct: 21 NVLIDVKGNREYSGILEGYDVYMNIVLQNASEIIN-------GENKGV-------YDRVL 66
Query: 91 LRGDSVIIV 99
+RGD+VI V
Sbjct: 67 VRGDNVIFV 75
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L+++ VL+ ++ ++ G ++ +D+H N++L + E+ R
Sbjct: 14 LDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGE---------------TSIR 58
Query: 85 FISKMFLRGDSVIIV 99
+ +RGDSV+++
Sbjct: 59 RLGLTLVRGDSVVVI 73
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 14/69 (20%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
VLI+ + N++ G + +D + N+VL+N E+ G+ K + ++
Sbjct: 21 NVLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN-------GENKGV-------FDRIL 66
Query: 91 LRGDSVIIV 99
+RGD+VI V
Sbjct: 67 VRGDNVIFV 75
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 15/69 (21%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
Q+ IN + N+ ++G +R FD+ N+V++N E+ N+ I +
Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNG---------------NEKNDIGMVV 61
Query: 91 LRGDSVIIV 99
+RG+SV+ V
Sbjct: 62 IRGNSVVTV 70
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 12 NSQTTLMLFCFWA--LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLE------NVREM 63
N T ++ F ++++ +V++ R+ KKL+G +R+FD+ N++L+ V +M
Sbjct: 2 NQATQIIPFTTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDM 61
Query: 64 WTELPK 69
+ ++ +
Sbjct: 62 YGDIDR 67
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V++ + ++ G ++ +D H N+VL+N E+ K + +K + + +
Sbjct: 17 VIVRLKGGREFRGELQGYDMHMNLVLDNAEEL-----KENEASRK---------LGTIIV 62
Query: 92 RGDSVIIV 99
RGD+V+ V
Sbjct: 63 RGDTVVYV 70
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 25 LEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
L++I ++ + ++ + ++GR AFD+H N+V+ + E + + + GK ++ + R
Sbjct: 11 LQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEE-FRRIRQKGKEDRE-----EKR 64
Query: 85 FISKMFLRGDSVI 97
+ + +RG++V+
Sbjct: 65 TLGMILIRGETVV 77
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++L+N ++K+ G +R +D N+VL++ E+ E P N + +
Sbjct: 14 KILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGE-----------DPANNHQLGLQTV 62
Query: 91 LRGDSVI 97
+RG+S+I
Sbjct: 63 IRGNSII 69
>sp|Q9USQ4|SIM3_SCHPO NASP-related protein sim3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=sim3 PE=1 SV=1
Length = 396
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 29 VLQVLINCRNN----KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 84
+L+ ++N R N KK G+ +A + LEN+REM +EL + K P ++
Sbjct: 276 ILKNVLNERENEVTDKKGKGKQKAEESTLTSDLENLREMLSELEQKTLDLKHGAPSLEEA 335
Query: 85 FISKM 89
+SKM
Sbjct: 336 VMSKM 340
>sp|P93115|MGDG_CUCSA Monogalactosyldiacylglycerol synthase, chloroplastic OS=Cucumis
sativus PE=1 SV=1
Length = 525
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 31 QVLINCRNNKKLLGRVRAFD 50
QVL+ C +NKKL GR+R+ D
Sbjct: 378 QVLVICGHNKKLAGRLRSID 397
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 31 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 90
++++ R+ +K +G +R FD+ N+VL++ E + D+ + F
Sbjct: 12 KLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE-----------RIYVGDCYSDKNLGLFF 60
Query: 91 LRGDSVIIV 99
+RGD+V+I+
Sbjct: 61 IRGDNVVIL 69
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V++ + ++ G ++ +D H N+VL+N E+ + G+ K S + +
Sbjct: 17 VIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK---------FSSVVI 62
Query: 92 RGDSVIIV 99
RGD+V+ V
Sbjct: 63 RGDNVVYV 70
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 32 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 91
V++ + ++ G ++ +D H N+VL+N E+ + G+ K S + +
Sbjct: 17 VIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEVVSK---------FSSVVI 62
Query: 92 RGDSVIIV 99
RGD+V+ V
Sbjct: 63 RGDNVVYV 70
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96
+N + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 5 QNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 60
Query: 97 I 97
+
Sbjct: 61 V 61
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 37 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK---GKKKALPVNKDRFISKMFLRG 93
++ + +G +AFD+H N++L E PK GK G++K R + + +RG
Sbjct: 22 QDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEK-------RILGLVLVRG 74
Query: 94 DSVI 97
+ ++
Sbjct: 75 EHIV 78
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 34 INCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 87
I+CR + + +G +AFD+H N++L + E PK K ++ + R +
Sbjct: 13 IDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLG 68
Query: 88 KMFLRGDSVI 97
+ LRG++++
Sbjct: 69 LVLLRGENLV 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,331,305
Number of Sequences: 539616
Number of extensions: 1192981
Number of successful extensions: 3452
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3425
Number of HSP's gapped (non-prelim): 46
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)