Query 034069
Match_columns 104
No_of_seqs 116 out of 838
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hks_A EIF-5A-2, eukaryotic tr 100.0 4.9E-41 1.7E-45 243.4 12.4 100 1-101 9-108 (167)
2 3er0_A Eukaryotic translation 100.0 4.3E-41 1.5E-45 243.6 10.6 101 1-102 11-111 (167)
3 1x6o_A Eukaryotic initiation f 100.0 1E-38 3.5E-43 232.5 11.0 98 1-99 9-108 (174)
4 3cpf_A Eukaryotic translation 100.0 3.5E-36 1.2E-40 211.7 11.1 87 16-102 1-87 (138)
5 1iz6_A Initiation factor 5A; S 100.0 6E-35 2.1E-39 205.5 11.6 86 17-102 2-87 (138)
6 1bkb_A Translation initiation 100.0 1.1E-34 3.9E-39 203.4 11.7 84 19-102 6-89 (136)
7 2eif_A IF-5A, protein (eukaryo 100.0 1E-33 3.5E-38 198.7 11.8 86 17-102 6-91 (136)
8 3a5z_B EF-P, elongation factor 100.0 1E-31 3.4E-36 197.9 10.8 84 18-102 3-86 (191)
9 1ueb_A EF-P, TT0860, elongatio 100.0 1.3E-31 4.6E-36 196.1 10.6 81 21-102 1-81 (184)
10 1yby_A Translation elongation 100.0 1E-30 3.5E-35 195.5 10.3 86 16-102 26-111 (215)
11 3tre_A EF-P, elongation factor 100.0 2.3E-30 7.8E-35 190.6 11.6 81 21-102 6-86 (191)
12 3oyy_A EF-P, elongation factor 100.0 3.7E-30 1.3E-34 189.5 11.4 81 21-102 4-84 (191)
13 1khi_A HEX1; membrane sealing, 99.9 3.7E-23 1.3E-27 150.5 8.7 85 11-103 24-117 (176)
14 3r8s_P 50S ribosomal protein L 83.4 4 0.00014 27.3 6.2 65 22-88 14-87 (114)
15 3v2d_T 50S ribosomal protein L 82.6 4.2 0.00014 28.3 6.3 64 23-88 18-90 (146)
16 2zjr_M 50S ribosomal protein L 79.3 3.7 0.00013 29.2 5.1 64 23-88 23-95 (166)
17 2ftc_K 39S ribosomal protein L 77.4 11 0.00039 24.4 6.7 49 26-78 3-60 (98)
18 3qx1_A FAS-associated factor 1 69.8 6.1 0.00021 24.0 3.8 29 53-82 3-31 (84)
19 3isy_A Bsupi, intracellular pr 64.8 28 0.00094 23.1 7.7 57 43-102 9-66 (120)
20 2f9h_A PTS system, IIA compone 59.3 9.2 0.00031 25.9 3.4 21 25-45 53-73 (129)
21 1ed7_A Chitinase A1, (CHBD-CHI 54.3 4.2 0.00015 22.4 0.9 25 26-50 7-31 (45)
22 1at0_A 17-hedgehog; developmen 54.1 18 0.00062 24.1 4.3 31 19-49 84-120 (145)
23 1k0h_A Gpfii; twisted beta-san 53.4 3.1 0.00011 27.6 0.2 33 23-58 71-103 (117)
24 2z14_A EF-hand domain-containi 51.9 13 0.00044 25.1 3.2 25 22-46 84-108 (133)
25 2fhd_A RAD9 homolog, DNA repai 49.8 11 0.00036 26.5 2.5 45 18-62 55-110 (153)
26 3od3_A Blue copper oxidase CUE 46.3 25 0.00085 28.2 4.6 51 29-87 182-232 (488)
27 1o6a_A Putative flagellar moto 44.8 28 0.00094 21.8 3.8 19 24-42 37-58 (96)
28 3frn_A Flagellar protein FLGA; 43.9 57 0.0019 24.7 6.0 29 59-87 242-270 (278)
29 2ftc_B Mitochondrial ribosomal 42.8 75 0.0026 21.4 6.6 33 47-83 72-111 (136)
30 3rby_A Uncharacterized protein 41.5 19 0.00065 26.9 2.9 27 20-46 218-244 (245)
31 1mvg_A Liver basic fatty acid 39.9 38 0.0013 22.1 4.0 38 59-96 46-83 (125)
32 1p9k_A ORF, hypothetical prote 39.0 30 0.001 20.5 3.1 19 25-43 60-78 (79)
33 3k3s_A Altronate hydrolase; st 38.7 38 0.0013 22.1 3.8 43 21-71 34-76 (105)
34 2exd_A NFED short homolog; mem 37.7 51 0.0017 20.0 4.1 28 25-52 25-52 (80)
35 1p6p_A Fatty acid-binding prot 37.3 51 0.0017 21.4 4.3 37 60-96 47-83 (125)
36 3gs9_A Protein GP18; NP_465809 37.0 63 0.0022 24.4 5.4 53 13-67 34-94 (342)
37 1ifc_A Intestinal fatty acid b 36.5 44 0.0015 22.0 3.9 37 60-96 48-84 (132)
38 2kj6_A Tubulin folding cofacto 35.3 24 0.00083 22.1 2.4 30 53-82 10-40 (97)
39 1b56_A Fatty acid binding prot 35.0 48 0.0016 21.9 3.9 37 60-96 52-88 (135)
40 1o8v_A Fatty acid binding prot 35.0 50 0.0017 21.7 4.0 37 60-96 51-87 (134)
41 1ggl_A Protein (cellular retin 34.9 54 0.0019 21.6 4.2 37 60-96 49-87 (134)
42 2g23_A PHS, phenoxazinone synt 34.2 70 0.0024 26.4 5.5 43 28-78 252-294 (612)
43 1mdc_A Insect fatty acid bindi 33.9 56 0.0019 21.5 4.1 37 60-96 49-85 (132)
44 2pp6_A Gifsy-2 prophage ATP-bi 33.9 90 0.0031 20.3 4.9 35 15-49 50-86 (102)
45 1ftp_A Muscle fatty acid bindi 33.8 54 0.0019 21.5 4.0 37 60-96 51-87 (133)
46 2g7b_A Cellular retinoic acid- 33.7 44 0.0015 22.1 3.6 35 60-94 50-84 (137)
47 2lcj_A PAB POLC intein; hydrol 33.3 65 0.0022 22.0 4.5 17 20-36 104-120 (185)
48 2f73_A L-FABP, fatty acid-bind 33.2 43 0.0015 22.8 3.5 38 59-96 69-106 (149)
49 2uxt_A Protein SUFI, SUFI; oxi 32.8 73 0.0025 24.8 5.2 48 28-83 180-227 (451)
50 2wsd_A Spore coat protein A; o 32.5 80 0.0027 25.0 5.5 50 28-85 228-277 (513)
51 1vyf_A SM14, 14 kDa fatty acid 31.7 50 0.0017 21.8 3.6 36 60-95 51-86 (135)
52 2a0a_A DER F 13; beta barrel, 31.4 60 0.0021 21.3 3.9 37 60-96 49-85 (131)
53 3ppt_A Sodium-calcium exchange 31.2 63 0.0022 21.3 4.0 36 60-95 49-84 (133)
54 3abg_A Bilirubin oxidase; clea 30.5 50 0.0017 26.6 4.0 49 29-85 200-254 (534)
55 1wjn_A Tubulin-folding protein 30.2 54 0.0019 19.9 3.4 28 54-81 6-35 (97)
56 2qo4_A Liver-basic fatty acid 29.4 45 0.0015 21.8 3.0 37 60-96 48-84 (126)
57 2z0t_A Putative uncharacterize 29.3 52 0.0018 21.4 3.2 30 16-45 18-54 (109)
58 3pr9_A FKBP-type peptidyl-prol 29.2 1.1E+02 0.0037 20.7 5.0 19 27-45 103-121 (157)
59 4a60_A Fatty acid-binding prot 28.7 94 0.0032 21.2 4.7 36 60-95 72-107 (154)
60 1giy_D 50S ribosomal protein L 28.7 1.2E+02 0.0041 21.4 5.3 62 17-82 40-123 (178)
61 2rcq_A CRBP-II, retinol-bindin 28.1 67 0.0023 21.4 3.8 36 60-95 53-90 (141)
62 1hfu_A Laccase 1; oxidoreducta 28.0 1.4E+02 0.005 23.4 6.3 48 28-83 163-219 (503)
63 4a1y_A Myelin P2 protein; tran 27.9 52 0.0018 21.8 3.1 36 60-95 51-86 (133)
64 1ix5_A FKBP; ppiase, isomerase 27.4 45 0.0015 22.3 2.8 20 26-45 103-122 (151)
65 1fdq_A Fatty acid-binding prot 27.1 46 0.0016 21.8 2.7 36 60-95 49-84 (131)
66 1crb_A Cellular retinol bindin 26.7 62 0.0021 21.3 3.3 36 60-95 49-86 (134)
67 1eal_A Gastrotropin, ileal lip 26.4 1E+02 0.0035 20.0 4.4 37 60-96 47-84 (127)
68 1v10_A Laccase; multicopper bl 26.0 1.6E+02 0.0055 23.3 6.2 49 28-84 189-247 (521)
69 3q6l_A Fatty acid-binding prot 25.9 73 0.0025 21.7 3.6 36 60-95 70-105 (152)
70 3prb_A FKBP-type peptidyl-prol 24.8 1.7E+02 0.0059 21.1 5.7 38 27-66 103-149 (231)
71 1lpj_A Retinol-binding protein 24.6 80 0.0027 20.6 3.6 36 60-95 49-86 (133)
72 3p6d_A Fatty acid-binding prot 24.5 82 0.0028 20.9 3.6 36 60-95 57-92 (139)
73 3vg7_A Fatty acid-binding prot 24.2 68 0.0023 21.1 3.2 37 60-96 51-87 (132)
74 3rsw_A Fatty acid-binding prot 24.1 64 0.0022 22.1 3.1 36 60-95 75-110 (158)
75 3plu_A Ubiquitin-like modifier 23.9 84 0.0029 19.8 3.4 28 54-82 18-45 (93)
76 2lba_A BABP protein; ileal bIl 23.6 68 0.0023 21.2 3.1 37 60-96 52-89 (136)
77 1o9y_A HRCQ2; secretory protei 23.2 1.3E+02 0.0044 18.1 4.5 19 24-42 33-54 (84)
78 3h43_A Proteasome-activating n 22.8 34 0.0012 21.1 1.3 23 23-45 52-74 (85)
79 3tqy_A Single-stranded DNA-bin 22.6 1.4E+02 0.0047 20.2 4.6 14 27-40 74-87 (158)
80 3gyr_A PHS, phenoxazinone synt 22.4 1.8E+02 0.006 23.0 5.8 44 28-79 252-295 (612)
81 2kl5_A Uncharacterized protein 22.2 54 0.0018 21.6 2.3 24 23-46 3-26 (110)
82 2hc8_A PACS, cation-transporti 22.2 74 0.0025 20.2 2.9 19 19-37 22-40 (113)
83 1rl2_A Protein (ribosomal prot 22.2 1.3E+02 0.0045 20.2 4.3 63 17-82 40-123 (137)
84 2wg5_A General control protein 21.9 30 0.001 22.2 1.0 26 22-47 70-95 (109)
85 2nwf_A Ubiquinol-cytochrome C 21.8 1.3E+02 0.0045 19.8 4.3 26 20-45 4-31 (141)
86 3udc_A Small-conductance mecha 21.8 73 0.0025 23.3 3.2 23 25-47 127-149 (285)
87 2yxy_A Hypothetical conserved 21.7 50 0.0017 22.0 2.0 32 18-49 53-84 (115)
88 1y43_B Aspergillopepsin II hea 21.6 1.4E+02 0.0047 20.9 4.5 44 21-77 51-94 (173)
89 1xne_A Hypothetical protein PF 21.1 78 0.0027 20.6 2.9 12 26-37 34-45 (113)
90 3lag_A Uncharacterized protein 20.7 72 0.0025 19.3 2.6 22 30-52 7-28 (98)
91 3elx_A Ileal bIle acid-binding 20.7 58 0.002 21.7 2.3 36 60-95 51-87 (138)
92 2l55_A SILB,silver efflux prot 20.6 1.5E+02 0.0052 17.9 4.2 30 23-52 44-78 (82)
93 3q0b_X Histone-lysine N-methyl 20.2 1.5E+02 0.0052 20.4 4.4 36 28-65 120-155 (167)
94 3vdy_A SSB, single-stranded DN 20.2 1.5E+02 0.005 18.5 4.1 14 27-40 68-81 (116)
No 1
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=4.9e-41 Score=243.36 Aligned_cols=100 Identities=83% Similarity=1.331 Sum_probs=82.6
Q ss_pred CCccccccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCc
Q 034069 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (104)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ 80 (104)
|||++|+|+ +++|+++.||||++++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|.+|+++++
T Consensus 9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k 87 (167)
T 3hks_A 9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 87 (167)
T ss_dssp ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecEEEeeeEEEEEcCCCCC
Q 034069 81 CDVPHVTRTDYQLIDISEDGF 101 (104)
Q Consensus 81 ve~~~ve~~~~qylY~dgd~y 101 (104)
+++|.|++++|||||+|++++
T Consensus 88 ve~~~ver~~~QyLY~d~d~~ 108 (167)
T 3hks_A 88 CDVPHVNRVDYQLIDITEDGF 108 (167)
T ss_dssp EEEECCEEEEEEEEEECTTSB
T ss_pred EEeeeEEEEEEEEEEECCCCE
Confidence 999999999999999976543
No 2
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-41 Score=243.62 Aligned_cols=101 Identities=64% Similarity=1.074 Sum_probs=88.6
Q ss_pred CCccccccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCc
Q 034069 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (104)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ 80 (104)
|||++|.|+ +++|++|.||||++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++
T Consensus 11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k 89 (167)
T 3er0_A 11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN 89 (167)
T ss_dssp ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecEEEeeeEEEEEcCCCCCc
Q 034069 81 CDVPHVTRTDYQLIDISEDGFP 102 (104)
Q Consensus 81 ve~~~ve~~~~qylY~dgd~y~ 102 (104)
+++|+|++++|||||+||+.|+
T Consensus 90 ve~~~ver~~~QyLY~dg~~~~ 111 (167)
T 3er0_A 90 MEVPVVKRNEYQLLDIDDGFLS 111 (167)
T ss_dssp EEECCCCEEEEECCCCTTTTCC
T ss_pred cccceEEEeeEEEEEEcCCEEE
Confidence 9999999999999999998775
No 3
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=1e-38 Score=232.45 Aligned_cols=98 Identities=52% Similarity=0.938 Sum_probs=77.7
Q ss_pred CCcccc--ccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCC
Q 034069 1 MSDEEH--HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (104)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~ 78 (104)
|||+.| +|+ +++|+++.|+|+++++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|++|+++
T Consensus 9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~ 87 (174)
T 1x6o_A 9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST 87 (174)
T ss_dssp -------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 677654 499 99999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CceeecEEEeeeEEEEEcCCC
Q 034069 79 HNCDVPHVTRTDYQLIDISED 99 (104)
Q Consensus 79 ~~ve~~~ve~~~~qylY~dgd 99 (104)
+++++|+|++++|||||+|||
T Consensus 88 ~kve~~~Ver~~~QyLY~dgd 108 (174)
T 1x6o_A 88 HNVEVPFVKTYTYSVLDIQAN 108 (174)
T ss_dssp SEEEEECCEEEEEEEEEEECC
T ss_pred CEEEeeEEEEEEEEEEEecCC
Confidence 999999999999999999998
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=211.70 Aligned_cols=87 Identities=64% Similarity=1.103 Sum_probs=80.0
Q ss_pred ceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 16 ~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+|.|+|+++++||+|++|+++|+||+|++++|+||||||+||+|+++|||+||+++|++|++++++++|+|++++|||||
T Consensus 1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly 80 (138)
T 3cpf_A 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 034069 96 ISEDGFP 102 (104)
Q Consensus 96 ~dgd~y~ 102 (104)
+||+.|+
T Consensus 81 ~dg~~~~ 87 (138)
T 3cpf_A 81 IQDGYLS 87 (138)
T ss_dssp EETTEEE
T ss_pred ecCCEEE
Confidence 9998764
No 5
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=6e-35 Score=205.50 Aligned_cols=86 Identities=31% Similarity=0.599 Sum_probs=83.7
Q ss_pred eeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 17 ~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.
T Consensus 2 ~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~ 81 (138)
T 1iz6_A 2 GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAI 81 (138)
T ss_dssp CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEE
T ss_pred CceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 034069 97 SEDGFP 102 (104)
Q Consensus 97 dgd~y~ 102 (104)
||+.|+
T Consensus 82 dg~~~~ 87 (138)
T 1iz6_A 82 TPDTVQ 87 (138)
T ss_dssp CSSEEE
T ss_pred CCCEEE
Confidence 998764
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.1e-34 Score=203.37 Aligned_cols=84 Identities=37% Similarity=0.671 Sum_probs=82.1
Q ss_pred eEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCC
Q 034069 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE 98 (104)
Q Consensus 19 t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dg 98 (104)
|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.||
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg 85 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG 85 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 034069 99 DGFP 102 (104)
Q Consensus 99 d~y~ 102 (104)
+.|+
T Consensus 86 ~~~~ 89 (136)
T 1bkb_A 86 DVIQ 89 (136)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 8764
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=1e-33 Score=198.72 Aligned_cols=86 Identities=37% Similarity=0.631 Sum_probs=83.2
Q ss_pred eeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 17 ~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.|+++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.++++++||||.
T Consensus 6 ~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~ 85 (136)
T 2eif_A 6 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAI 85 (136)
T ss_dssp SSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEE
T ss_pred EeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEe
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 034069 97 SEDGFP 102 (104)
Q Consensus 97 dgd~y~ 102 (104)
||+.|+
T Consensus 86 dg~~~~ 91 (136)
T 2eif_A 86 MGDMVQ 91 (136)
T ss_dssp ETTEEE
T ss_pred cCCEEE
Confidence 998764
No 8
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=99.97 E-value=1e-31 Score=197.87 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=79.5
Q ss_pred eeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcC
Q 034069 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDIS 97 (104)
Q Consensus 18 ~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~d 97 (104)
.-+++++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|+++++++.|+|++++|||||.|
T Consensus 3 ~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~d 81 (191)
T 3a5z_B 3 HMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND 81 (191)
T ss_dssp ---CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEEC
T ss_pred ccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeC
Confidence 34679999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 034069 98 EDGFP 102 (104)
Q Consensus 98 gd~y~ 102 (104)
||.|+
T Consensus 82 gd~~~ 86 (191)
T 3a5z_B 82 GEFWH 86 (191)
T ss_dssp SSCEE
T ss_pred CCEEE
Confidence 99874
No 9
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=99.97 E-value=1.3e-31 Score=196.15 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=78.9
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (104)
Q Consensus 21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~ 100 (104)
|+++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|+++++++.|+|++++|||||.|||.
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~ 79 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEE 79 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTE
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCE
Confidence 47999999999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 034069 101 FP 102 (104)
Q Consensus 101 y~ 102 (104)
|+
T Consensus 80 ~~ 81 (184)
T 1ueb_A 80 MV 81 (184)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 10
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=99.97 E-value=1e-30 Score=195.52 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=77.3
Q ss_pred ceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 16 ~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
.+-..|+++++||+|++|+++|+||+|++++|+|||| |+||+|+|+|||+||+++|++|+++++++.|+|++++|||||
T Consensus 26 ~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY 104 (215)
T 1yby_A 26 KKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLY 104 (215)
T ss_dssp -----CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEE
T ss_pred hhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEE
Confidence 3445668999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 034069 96 ISEDGFP 102 (104)
Q Consensus 96 ~dgd~y~ 102 (104)
.|||.|+
T Consensus 105 ~Dgd~y~ 111 (215)
T 1yby_A 105 NDGDLYY 111 (215)
T ss_dssp EETTEEE
T ss_pred eCCCEEE
Confidence 9999874
No 11
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=99.97 E-value=2.3e-30 Score=190.58 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=79.3
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (104)
Q Consensus 21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~ 100 (104)
++++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|.+|+++++++.|.|++++|||||.||+.
T Consensus 6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 84 (191)
T 3tre_A 6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGEF 84 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSSC
T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCCc
Confidence 69999999999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 034069 101 FP 102 (104)
Q Consensus 101 y~ 102 (104)
|+
T Consensus 85 ~~ 86 (191)
T 3tre_A 85 WH 86 (191)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 12
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=99.97 E-value=3.7e-30 Score=189.51 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=79.0
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (104)
Q Consensus 21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~ 100 (104)
|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|.|+++++||||.|||.
T Consensus 4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence 68999999999999999999999999999999 78999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 034069 101 FP 102 (104)
Q Consensus 101 y~ 102 (104)
|+
T Consensus 83 ~~ 84 (191)
T 3oyy_A 83 YV 84 (191)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.89 E-value=3.7e-23 Score=150.48 Aligned_cols=85 Identities=31% Similarity=0.572 Sum_probs=77.7
Q ss_pred ccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEEEcCC--------Cce
Q 034069 11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS--------HNC 81 (104)
Q Consensus 11 ~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~-KpGKhG~A~vr~k~knl~TG~~~E~tf~s~--------~~v 81 (104)
+++|+++.|+|+++++||+|.+|+|+|+||+|++++++ ||||| ++.+.+||||+++|...++. +++
T Consensus 24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm 98 (176)
T 1khi_A 24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTM 98 (176)
T ss_dssp ---CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEE
T ss_pred CCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCccccccee
Confidence 68999999999999999999999999999999999999 89998 89999999999999999988 899
Q ss_pred eecEEEeeeEEEEEcCCCCCcc
Q 034069 82 DVPHVTRTDYQLIDISEDGFPA 103 (104)
Q Consensus 82 e~~~ve~~~~qylY~dgd~y~~ 103 (104)
++|+|+ +||+|.++ |+|++
T Consensus 99 ~VPvVk--~yQlldI~-dg~ls 117 (176)
T 1khi_A 99 LGPVFK--QYRVLDMQ-DGSIV 117 (176)
T ss_dssp EEECCE--EEEEEEEE-TTEEE
T ss_pred ccceeE--EEEEEEEc-CCeEE
Confidence 999996 99999994 66664
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=83.36 E-value=4 Score=27.28 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=41.3
Q ss_pred EecccccCceEEEE-----CCeeEEEEEeeEec---CCCCcccEEEEEEEEccCCcEEEEEEcCCC-ceeecEEEe
Q 034069 22 QQAGTIRKNGYIVI-----KGRPCKVVEVSTSK---TGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTR 88 (104)
Q Consensus 22 i~~~~lkkG~~I~i-----~g~p~~Vve~~~~K---pGKhG~A~vr~k~knl~TG~~~E~tf~s~~-~ve~~~ve~ 88 (104)
....+|++|++|.+ +|....+.-++-.- -|+ |- --.+.++++..|.-.|.+|+-.. .++.+.|.+
T Consensus 14 ~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~-G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r 87 (114)
T 3r8s_P 14 QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR-GL-HSAFTVRKISNGEGVERVFQTHSPVVDSISVKR 87 (114)
T ss_dssp SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-GG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEE
T ss_pred cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC-CC-CeEEEEEEecCCccEEEEEecCCCccceEEEEE
Confidence 34578999998865 46655443333222 133 32 23478999999999999999653 355555543
No 15
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=82.58 E-value=4.2 Score=28.33 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=40.2
Q ss_pred ecccccCceEEEE-----CCeeEEEEEeeEec---CCCCcccEEEEEEEEccCCcEEEEEEcCCC-ceeecEEEe
Q 034069 23 QAGTIRKNGYIVI-----KGRPCKVVEVSTSK---TGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTR 88 (104)
Q Consensus 23 ~~~~lkkG~~I~i-----~g~p~~Vve~~~~K---pGKhG~A~vr~k~knl~TG~~~E~tf~s~~-~ve~~~ve~ 88 (104)
...+|++|++|.+ +|....+.-|+-+- -|+ |- --.+.+|++..|--+|.+|+-.. .++.+.|.+
T Consensus 18 diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~-Gl-~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvr 90 (146)
T 3v2d_T 18 DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN-GF-NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQ 90 (146)
T ss_dssp CCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC-GG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEE
T ss_pred cCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC-CC-CeEEEEEEecCCccEEEEEecCCCccceEEEEe
Confidence 4568999998865 56544443322221 133 22 23478999999999999999654 355555543
No 16
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=79.32 E-value=3.7 Score=29.17 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=40.4
Q ss_pred ecccccCceEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEEEcCCC-ceeecEEEe
Q 034069 23 QAGTIRKNGYIVI-----KGRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTR 88 (104)
Q Consensus 23 ~~~~lkkG~~I~i-----~g~p~~Vve~~~~---KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~-~ve~~~ve~ 88 (104)
...+|++|++|.+ +|....+.-|+-+ +-|+ |- --.+.+|++..|--+|++|+-.. .|+.+.|.+
T Consensus 23 diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~-Gl-~sTFTVRkis~GvGVER~FplhSP~I~kIEVvr 95 (166)
T 2zjr_M 23 QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS-GS-RKSFTVRKISFGEGVERVFPFASPLVNQVTIVE 95 (166)
T ss_dssp CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCC-GG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEE
T ss_pred CCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCC-CC-CcEEEEEEecCCeeEEEEEecCCCccceEEEEe
Confidence 4578999999976 4553333222211 2233 32 23589999999999999999654 355555443
No 17
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=77.36 E-value=11 Score=24.38 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=30.9
Q ss_pred cccCceEEEE----CCeeEEEEE-----eeEecCCCCcccEEEEEEEEccCCcEEEEEEcCC
Q 034069 26 TIRKNGYIVI----KGRPCKVVE-----VSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (104)
Q Consensus 26 ~lkkG~~I~i----~g~p~~Vve-----~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~ 78 (104)
++++|++|.+ .|....+.- +... |+ |- --.+.+|++..|.-.|.+|+-.
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~--~~-G~-~~tftvRki~~gvGVEr~fpl~ 60 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRS--GR-GL-GATFILRNVIEGQGVEICFELY 60 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEE--CC-CC-CcEEEEEEeccCceEEEEEecC
Confidence 5777887654 333333322 3322 22 22 2358999999999999999854
No 18
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=69.77 E-value=6.1 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=22.9
Q ss_pred CcccEEEEEEEEccCCcEEEEEEcCCCcee
Q 034069 53 HGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (104)
Q Consensus 53 hG~A~vr~k~knl~TG~~~E~tf~s~~~ve 82 (104)
|....+++.+| +-+|+.+..+|++.+++.
T Consensus 3 ~~~~~~~i~iR-lpdG~r~~~~F~~~~tl~ 31 (84)
T 3qx1_A 3 HMEPVSKLRIR-TPSGEFLERRFLASNKLQ 31 (84)
T ss_dssp -CCCEEEEEEE-CTTSCEEEEEEETTSBHH
T ss_pred CCCCeEEEEEE-CCCCCEEEEEeCCCCCHH
Confidence 55566777776 678999999999999985
No 19
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=64.83 E-value=28 Score=23.09 Aligned_cols=57 Identities=7% Similarity=0.014 Sum_probs=39.6
Q ss_pred EEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEE-eeeEEEEEcCCCCCc
Q 034069 43 VEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVT-RTDYQLIDISEDGFP 102 (104)
Q Consensus 43 ve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve-~~~~qylY~dgd~y~ 102 (104)
+++.-.++| +.-.+.+.++|.-+-. ++.+|+++.+++....+ .-+--|-|.++..|.
T Consensus 9 ~~v~~~~~g--~~v~~~ltv~N~s~~~-v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~Ft 66 (120)
T 3isy_A 9 LSIDAIQEP--EQIKFNMSLKNQSERA-IEFQFSTGQKFELVVYDSEHKERYRYSKEKMFT 66 (120)
T ss_dssp EEEEEEECS--SCEEEEEEEEECSSSC-EEEEESSSCCEEEEEECTTCCEEEETTTTCCCC
T ss_pred EEEeeccCC--CeEEEEEEEEcCCCCc-EEEEeCCCCEEEEEEECCCCCEEEEccccchhh
Confidence 444444444 5677889999986655 77999999999988876 334455557776663
No 20
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=59.27 E-value=9.2 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=19.0
Q ss_pred ccccCceEEEECCeeEEEEEe
Q 034069 25 GTIRKNGYIVIKGRPCKVVEV 45 (104)
Q Consensus 25 ~~lkkG~~I~i~g~p~~Vve~ 45 (104)
.+|++|+.+.|++.-|.|+.+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999753
No 21
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=54.33 E-value=4.2 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=20.2
Q ss_pred cccCceEEEECCeeEEEEEeeEecC
Q 034069 26 TIRKNGYIVIKGRPCKVVEVSTSKT 50 (104)
Q Consensus 26 ~lkkG~~I~i~g~p~~Vve~~~~Kp 50 (104)
.-+.|+.|.++|..|+++......|
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~ 31 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLA 31 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcC
Confidence 3478999999999999987766643
No 22
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=54.15 E-value=18 Score=24.09 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=23.4
Q ss_pred eEEEecccccCceEEEE-CC-----eeEEEEEeeEec
Q 034069 19 TFPQQAGTIRKNGYIVI-KG-----RPCKVVEVSTSK 49 (104)
Q Consensus 19 t~~i~~~~lkkG~~I~i-~g-----~p~~Vve~~~~K 49 (104)
...+.|.+|++|+.|.+ +| .|-+|++++...
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~ 120 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVR 120 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEE
Confidence 46689999999998864 44 477888776654
No 23
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=53.41 E-value=3.1 Score=27.57 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.1
Q ss_pred ecccccCceEEEECCeeEEEEEeeEecCCCCcccEE
Q 034069 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKC 58 (104)
Q Consensus 23 ~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~v 58 (104)
.+..++.|+.|.++|+.|.|.+ +.|.-+|.+.+
T Consensus 71 D~~~~~~gD~v~i~g~~y~V~~---v~PDg~G~~~L 103 (117)
T 1k0h_A 71 EVRQLRRGDTLTIGEENFWVDR---VSPDDGGSCHL 103 (117)
T ss_dssp STTTCCSSCEEEETTTCEEBCC---CCSSSCCCTTC
T ss_pred ccCCCCCCCEEEECCeEEEEee---eccCCCCeEEE
Confidence 4556799999999999999987 45654466643
No 24
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=51.91 E-value=13 Score=25.08 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=23.0
Q ss_pred EecccccCceEEEECCeeEEEEEee
Q 034069 22 QQAGTIRKNGYIVIKGRPCKVVEVS 46 (104)
Q Consensus 22 i~~~~lkkG~~I~i~g~p~~Vve~~ 46 (104)
+...||..|..|.+-|+.+.|+++.
T Consensus 84 ~~~~Dl~VG~~v~i~gR~f~I~dcD 108 (133)
T 2z14_A 84 YTVYHFNVGTEVVFYGRTFKIYDCD 108 (133)
T ss_dssp CCGGGCCTTCEEEETTEEEEEEEEC
T ss_pred cCHHHcccCCEEEEecEEEEEEeCC
Confidence 6789999999999999999999864
No 25
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=49.77 E-value=11 Score=26.48 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=32.1
Q ss_pred eeEEEecccccCceEEEECCe---eEEEEEeeEecC--------CCCcccEEEEEE
Q 034069 18 KTFPQQAGTIRKNGYIVIKGR---PCKVVEVSTSKT--------GKHGHAKCHFVG 62 (104)
Q Consensus 18 ~t~~i~~~~lkkG~~I~i~g~---p~~Vve~~~~Kp--------GKhG~A~vr~k~ 62 (104)
..-.+..=+||+|+.|.+++- ||.|+.+.+.-+ --+|++.|.++-
T Consensus 55 ~~~~vk~LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 55 NSNQIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp ETTSEEESCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred ChhhceeeeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEcc
Confidence 334466679999999999975 699998884322 234778776554
No 26
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=46.28 E-value=25 Score=28.22 Aligned_cols=51 Identities=8% Similarity=-0.061 Sum_probs=36.5
Q ss_pred CceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEE
Q 034069 29 KNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVT 87 (104)
Q Consensus 29 kG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve 87 (104)
.|+.+.+||.++-.+. .||+ .+|+++.|.-.-+.+...+..+.++.++-.+
T Consensus 182 ~gd~~lvNG~~~p~~~----v~g~----~~RlRliNas~~~~~~l~i~dg~~~~vIa~D 232 (488)
T 3od3_A 182 FGDTLLTNGAIYPQHA----APRG----WLRLRLLNGCNARSLNFATSDNRPLYVIASD 232 (488)
T ss_dssp CCSEEEETTBSSCEEE----EEEE----EEEEEEEECCSSCCEEEEETTCCCEEEEEET
T ss_pred CCCEEEEcCCcCccEe----cCCC----EEEEEEEccCCCceeeeeecCCCeEEEEEeC
Confidence 5889999998664443 2444 6899999998888887777656666554433
No 27
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=44.85 E-value=28 Score=21.80 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.1
Q ss_pred cccccCceEEEEC---CeeEEE
Q 034069 24 AGTIRKNGYIVIK---GRPCKV 42 (104)
Q Consensus 24 ~~~lkkG~~I~i~---g~p~~V 42 (104)
.-+|++|++|.++ ++|..|
T Consensus 37 ll~L~~GdVI~Ld~~~~~~v~v 58 (96)
T 1o6a_A 37 VLEMIHGSIIELDKLTGEPVDI 58 (96)
T ss_dssp HHHCCTTCEEEEEEETTCCEEE
T ss_pred HhCCCCCCEEEeCCCCCCcEEE
Confidence 4578999999998 567666
No 28
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=43.85 E-value=57 Score=24.70 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=23.3
Q ss_pred EEEEEEccCCcEEEEEEcCCCceeecEEE
Q 034069 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVT 87 (104)
Q Consensus 59 r~k~knl~TG~~~E~tf~s~~~ve~~~ve 87 (104)
.+++||+.+|+++.-+..++..|+++.+-
T Consensus 242 ~IRVrNl~SgkiV~G~V~~~G~Vrv~~~~ 270 (278)
T 3frn_A 242 TVRAMNVESRKYVFGRVERGPVLRILEVV 270 (278)
T ss_dssp EEEEEC--CCCEEEEEEETTTEEEECC--
T ss_pred EEEEEECCCCCEEEEEEecCCeEEEEEEE
Confidence 58999999999999999999999988764
No 29
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=42.82 E-value=75 Score=21.44 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=20.6
Q ss_pred EecCCCCccc-------EEEEEEEEccCCcEEEEEEcCCCceee
Q 034069 47 TSKTGKHGHA-------KCHFVGIDIFNGKKLEDIVPSSHNCDV 83 (104)
Q Consensus 47 ~~KpGKhG~A-------~vr~k~knl~TG~~~E~tf~s~~~ve~ 83 (104)
-.+||+ |+. +.++..| .++..--.++|++.-.+
T Consensus 72 E~~pG~-gg~laRsAGt~a~ii~k---e~~~~~vrLPSGe~r~v 111 (136)
T 2ftc_B 72 ESEPGR-GAQYIRAAGTCGVLLRK---VNGTAIIQLPSKRQMQV 111 (136)
T ss_pred eccCCC-CcEEEEeCCCeEEEEEe---cCCEEEEECCCCCeEEE
Confidence 347898 543 4444454 46667777888876543
No 30
>3rby_A Uncharacterized protein YLR301W; beta-barrel, unknown function; HET: PGE; 2.30A {Saccharomyces cerevisiae}
Probab=41.47 E-value=19 Score=26.88 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEEecccccCceEEEECCeeEEEEEee
Q 034069 20 FPQQAGTIRKNGYIVIKGRPCKVVEVS 46 (104)
Q Consensus 20 ~~i~~~~lkkG~~I~i~g~p~~Vve~~ 46 (104)
+|.....+++|+.|.++|..|+|+|..
T Consensus 218 fP~~~~~l~~g~~v~v~g~~W~viE~~ 244 (245)
T 3rby_A 218 IPQSYENLKKGSTVTSNGLNWEVIEYH 244 (245)
T ss_dssp SCCCCTTCCTTCEEEETTEEEEEEEEE
T ss_pred CCccccccccCCEEEECCeEEEEEEec
Confidence 666677799999999999999999864
No 31
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=39.91 E-value=38 Score=22.15 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=28.8
Q ss_pred EEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 59 r~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
.+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 83 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVH 83 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEE
Confidence 36667777788888888888888887777666666554
No 32
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=39.05 E-value=30 Score=20.45 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.9
Q ss_pred ccccCceEEEECCeeEEEE
Q 034069 25 GTIRKNGYIVIKGRPCKVV 43 (104)
Q Consensus 25 ~~lkkG~~I~i~g~p~~Vv 43 (104)
..++.|+.|.++|+|+.|+
T Consensus 60 ~~v~~gd~I~v~~~~~~~~ 78 (79)
T 1p9k_A 60 CKIVAGQTVSFAGHSVQVV 78 (79)
T ss_dssp CCCCSSEEEEETTEEEEEE
T ss_pred CCCCCCCEEEECCEEEEEe
Confidence 3578899999999998775
No 33
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=38.69 E-value=38 Score=22.09 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=30.6
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEE
Q 034069 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKL 71 (104)
Q Consensus 21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~ 71 (104)
.+-..+|++|..|.++|....+ .+-+..| | ++-+++|..|..+
T Consensus 34 aVAl~~L~aG~~v~~~g~~v~l--~~dIP~G-H-----KiAl~dI~~Ge~V 76 (105)
T 3k3s_A 34 AVALADLAEGTEVSVDNQTVTL--RQDVARG-H-----KFALTDIAKGANV 76 (105)
T ss_dssp EEESSCBCTTCEEEETTEEEEC--SSCBCTT-C-----EEESSCBCTTCEE
T ss_pred EEecCccCCCCEEeeCCcEEEE--CccCCCC-C-----EEEEcccCCCCeE
Confidence 4557889999999999875432 3444444 5 7889999988744
No 34
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=37.71 E-value=51 Score=19.98 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=20.9
Q ss_pred ccccCceEEEECCeeEEEEEeeEecCCC
Q 034069 25 GTIRKNGYIVIKGRPCKVVEVSTSKTGK 52 (104)
Q Consensus 25 ~~lkkG~~I~i~g~p~~Vve~~~~KpGK 52 (104)
.+|.+...|.++|+.|.+..-....+|.
T Consensus 25 ~~i~~~G~V~i~Ge~W~A~s~~~i~~G~ 52 (80)
T 2exd_A 25 KIAEDHYLVEVEGDKWIAYSDEKLSLGD 52 (80)
T ss_dssp ECCTTCEEEEETTEEEEECCSSCCCTTC
T ss_pred EecCCCEEEEECCEEEEEEECCccCCCC
Confidence 3566677899999999997655556665
No 35
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=37.26 E-value=51 Score=21.44 Aligned_cols=37 Identities=5% Similarity=0.059 Sum_probs=26.8
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 83 (125)
T 1p6p_A 47 FVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQ 83 (125)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEE
Confidence 5666777777888888888888877777666655554
No 36
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Probab=36.95 E-value=63 Score=24.44 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCCceeeEEEecc--------cccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccC
Q 034069 13 DAGASKTFPQQAG--------TIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67 (104)
Q Consensus 13 ~~~~~~t~~i~~~--------~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~T 67 (104)
+..-+.++.++.. -|..+..|.++|+.|.|..++...-| |...+.+.+++++-
T Consensus 34 Ng~~~LsF~i~~~~~n~~~~~~l~~e~~I~~~~q~YvI~~~~~~~~g--~~~~~~V~A~hi~~ 94 (342)
T 3gs9_A 34 NEMWSIEFXVAQTPKNAHCYSFLDYESSVYFRGQEFVVKQLSHDAVG--KTLSKDIRAPHIYY 94 (342)
T ss_dssp TTEEEEEEEEEEC-----CCCCSSTTCEEEETTEEEECCEECCBC-----CEEEEEEEEBGGG
T ss_pred CCcEEEEEEEecCccchHHHHhhCcCCEEEECCcEEEEEEeEeecCC--CEEEEEEEEEEeee
Confidence 3344455555544 48999999999999999988876654 34667888888753
No 37
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=36.47 E-value=44 Score=21.95 Aligned_cols=37 Identities=8% Similarity=-0.039 Sum_probs=25.5
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 84 (132)
T 1ifc_A 48 FTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWT 84 (132)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 5666677777788888888888776666555554443
No 38
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=35.33 E-value=24 Score=22.10 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=24.4
Q ss_pred CcccEEEEEEEE-ccCCcEEEEEEcCCCcee
Q 034069 53 HGHAKCHFVGID-IFNGKKLEDIVPSSHNCD 82 (104)
Q Consensus 53 hG~A~vr~k~kn-l~TG~~~E~tf~s~~~ve 82 (104)
||.+.|++.++. ...++..|..+...++|.
T Consensus 10 ~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~ 40 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSADARFSPQMSVE 40 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCEEEEECTTCCHH
T ss_pred CCCceEEEEEEECCCCceEEEEEeCCCChHH
Confidence 588999999986 444568999999998875
No 39
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=35.03 E-value=48 Score=21.87 Aligned_cols=37 Identities=5% Similarity=-0.188 Sum_probs=25.4
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 52 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 88 (135)
T 1b56_A 52 LTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCN 88 (135)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEE
Confidence 5666677777788888888888776666555554443
No 40
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=34.96 E-value=50 Score=21.75 Aligned_cols=37 Identities=5% Similarity=-0.190 Sum_probs=26.3
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+-|+.++...++-+.++-++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 87 (134)
T 1o8v_A 51 YKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLIT 87 (134)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 5666777778888888888888777666665554443
No 41
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=34.91 E-value=54 Score=21.60 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=28.3
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecE--EEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPH--VTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~--ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+.|+.++... ++-+.++-++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt 87 (134)
T 1ggl_A 49 MTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVT 87 (134)
T ss_dssp EEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEE
Confidence 56677777888888999999998877 77666665554
No 42
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=34.16 E-value=70 Score=26.38 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=34.5
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCC
Q 034069 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (104)
Q Consensus 28 kkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~ 78 (104)
..|+.+++||.++-.+++ +|| .+|+++.|.-.-+.+...+...
T Consensus 252 ~~gd~~lVNG~~~p~~~V---~~g-----~yRlRliNas~~r~~~l~i~~h 294 (612)
T 2g23_A 252 FFGPYTTVNGRIWPYADV---DDG-----WYRLRLVNASNARIYNLVLIDE 294 (612)
T ss_dssp CCCSEEEETTEESCEEEE---ESS-----EEEEEEEECCSSCCEEEEEECT
T ss_pred CcCCEEEECCccCCeEEe---cCC-----eEEEEEEecCCCeEEEEEEcCC
Confidence 468999999998766543 454 4899999999999888888765
No 43
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=33.90 E-value=56 Score=21.47 Aligned_cols=37 Identities=8% Similarity=-0.093 Sum_probs=27.7
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 85 (132)
T 1mdc_A 49 YSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYT 85 (132)
T ss_dssp EEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEE
T ss_pred EEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEE
Confidence 5667777778888888888888887777666665554
No 44
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=33.87 E-value=90 Score=20.28 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=25.3
Q ss_pred CceeeEEEecccc--cCceEEEECCeeEEEEEeeEec
Q 034069 15 GASKTFPQQAGTI--RKNGYIVIKGRPCKVVEVSTSK 49 (104)
Q Consensus 15 ~~~~t~~i~~~~l--kkG~~I~i~g~p~~Vve~~~~K 49 (104)
|+..|.++=++.- +.|+.+.++|+-|.|..+++..
T Consensus 50 G~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vtr~~~~n 86 (102)
T 2pp6_A 50 GNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFN 86 (102)
T ss_dssp --CEEEEECCSSCCCCTTCEEEETTEEEEEEEEEEET
T ss_pred CCceEEEEecCCcccCCCCEEEEcCcEEEEEEEEEEC
Confidence 4445555545555 4689999999999999998874
No 45
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=33.84 E-value=54 Score=21.54 Aligned_cols=37 Identities=11% Similarity=-0.109 Sum_probs=26.9
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t 87 (133)
T 1ftp_A 51 FKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTIT 87 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 5666777778888888888888877777666555544
No 46
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=33.73 E-value=44 Score=22.07 Aligned_cols=35 Identities=9% Similarity=-0.055 Sum_probs=20.4
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLI 94 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qyl 94 (104)
+.++...+.+..+.+|+.|+.++...++-+.++-+
T Consensus 50 ~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~ 84 (137)
T 2g7b_A 50 FYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSL 84 (137)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEE
T ss_pred EEEEEEECCeEEEEEEecCCceEEECCCCCEEEEE
Confidence 44555555666666777776666555554444433
No 47
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=33.31 E-value=65 Score=21.96 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=14.5
Q ss_pred EEEecccccCceEEEEC
Q 034069 20 FPQQAGTIRKNGYIVIK 36 (104)
Q Consensus 20 ~~i~~~~lkkG~~I~i~ 36 (104)
..+.|++||+|+.|.+-
T Consensus 104 ~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 104 IEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp EEEEGGGCCTTCEEEEC
T ss_pred EEEEHHHCCCCCEEEEc
Confidence 35889999999999874
No 48
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=33.17 E-value=43 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=30.7
Q ss_pred EEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 59 r~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
.+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt 106 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQ 106 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECE
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEE
Confidence 36777888889999999999999988888777766655
No 49
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=32.78 E-value=73 Score=24.83 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=33.9
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceee
Q 034069 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83 (104)
Q Consensus 28 kkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~ 83 (104)
..|+.+.+||.+.-.++ ++|| .+|+++.|.-.-..+...+.-+.++.+
T Consensus 180 ~~~d~~liNG~~~p~~~---v~~g-----~~RlRliNa~~~~~~~~~i~dg~~~~v 227 (451)
T 2uxt_A 180 FVGDTLLVNGVQSPYVE---VSRG-----WVRLRLLNASNSRRYQLQMNDGRPLHV 227 (451)
T ss_dssp CCCSEEEETTEESCEEE---ECSS-----EEEEEEEECCSSCCEEEEETTSCCEEE
T ss_pred CcCCEEEECCcccceEE---ecCC-----EEEEEEEccCCceeEEEEECCCCeEEE
Confidence 35889999999876554 3444 589999999887777776643455543
No 50
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=32.48 E-value=80 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=34.4
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecE
Q 034069 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH 85 (104)
Q Consensus 28 kkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ 85 (104)
..|+.+++||.++-.+++ ++| .+|+++.|.-.-..+...+..+.++.++-
T Consensus 228 ~~~d~~liNG~~~p~~~v---~~~-----~~RlRliNa~~~~~~~~~i~~~~~~~via 277 (513)
T 2wsd_A 228 FCGETILVNGKVWPYLEV---EPR-----KYRFRVINASNTRTYNLSLDNGGDFIQIG 277 (513)
T ss_dssp CCCSEEEETTEESCEEEC---CSS-----EEEEEEEECCSSCCEEEEETTCCCEEEEE
T ss_pred cccceEEECCcccceEEe---cCC-----EEEEEEEccCCcceEEEEECCCCeEEEEc
Confidence 358999999998766543 343 48999999887776666665543554443
No 51
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=31.66 E-value=50 Score=21.79 Aligned_cols=36 Identities=8% Similarity=-0.061 Sum_probs=23.5
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++..-+.+..+.+|+-|+.++...++-+.++-++
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~ 86 (135)
T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVV 86 (135)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEE
Confidence 456666667777777777777776666655544443
No 52
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=31.40 E-value=60 Score=21.27 Aligned_cols=37 Identities=5% Similarity=-0.045 Sum_probs=27.9
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++..-+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t 85 (131)
T 2a0a_A 49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQ 85 (131)
T ss_dssp EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 6667777788888889998888887777666655554
No 53
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=31.16 E-value=63 Score=21.28 Aligned_cols=36 Identities=6% Similarity=-0.175 Sum_probs=24.2
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+.+..+.+|+-|+.++...++-+.++-+.
T Consensus 49 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~v 84 (133)
T 3ppt_A 49 WSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTC 84 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEE
T ss_pred EEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEE
Confidence 556666677777888888888876666655554443
No 54
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=30.50 E-value=50 Score=26.57 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=34.8
Q ss_pred CceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcC------CCceeecE
Q 034069 29 KNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS------SHNCDVPH 85 (104)
Q Consensus 29 kG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s------~~~ve~~~ 85 (104)
.|+.+.+||.++-.+++ +|+ .+|+++.|.-.-+.+...+.. +.++.++-
T Consensus 200 ~gd~~lvNG~~~p~~~v---~~~-----~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~vIa 254 (534)
T 3abg_A 200 WGDVIHVNGQPWPFKNV---EPR-----KYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIA 254 (534)
T ss_dssp CCSEEEETTEESCBCBC---CSS-----EEEEEEEECCSSCCEEEEECCSSSTTCCCCEEEEE
T ss_pred cCceeccCCccCceEEe---cCc-----EEEEEEEecCCcceEEEEEecccCcCCCccEEEEE
Confidence 48899999998765433 343 589999999888877777754 45665543
No 55
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.24 E-value=54 Score=19.86 Aligned_cols=28 Identities=14% Similarity=0.025 Sum_probs=22.3
Q ss_pred cccEEEEEEE--EccCCcEEEEEEcCCCce
Q 034069 54 GHAKCHFVGI--DIFNGKKLEDIVPSSHNC 81 (104)
Q Consensus 54 G~A~vr~k~k--nl~TG~~~E~tf~s~~~v 81 (104)
+...+++.++ +..+|+..|.+++...+|
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV 35 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTV 35 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBH
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCH
Confidence 5567777776 568999999999987776
No 56
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=29.37 E-value=45 Score=21.77 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.5
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++...+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t 84 (126)
T 2qo4_A 48 FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVK 84 (126)
T ss_dssp EEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEE
Confidence 5566666777788888888888777666665555443
No 57
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=29.33 E-value=52 Score=21.38 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=18.4
Q ss_pred ceeeEEEecc-----cccCceEEEECCe--eEEEEEe
Q 034069 16 ASKTFPQQAG-----TIRKNGYIVIKGR--PCKVVEV 45 (104)
Q Consensus 16 ~~~t~~i~~~-----~lkkG~~I~i~g~--p~~Vve~ 45 (104)
+.+|+-+-.+ .|++|+.|.++|+ .++|+++
T Consensus 18 G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v 54 (109)
T 2z0t_A 18 GKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGI 54 (109)
T ss_dssp TSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEE
T ss_pred CCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEE
Confidence 3445554443 4689999999764 3444443
No 58
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=29.15 E-value=1.1e+02 Score=20.69 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=15.7
Q ss_pred ccCceEEEECCeeEEEEEe
Q 034069 27 IRKNGYIVIKGRPCKVVEV 45 (104)
Q Consensus 27 lkkG~~I~i~g~p~~Vve~ 45 (104)
+++|+.+.++|.+..|+++
T Consensus 103 ~~~G~~~~~~~~~~~V~~v 121 (157)
T 3pr9_A 103 PIKGLTITIDGIPGKIVSI 121 (157)
T ss_dssp CCTTCEEEETTEEEEEEEE
T ss_pred cCCCcEEEecCCCeEEEEE
Confidence 4569999999999888664
No 59
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=28.70 E-value=94 Score=21.16 Aligned_cols=36 Identities=3% Similarity=-0.212 Sum_probs=24.9
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+.+..+.+|+-|+.++....+-+.++-+.
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~v 107 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTI 107 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEE
Confidence 566677777788888888888877666655555444
No 60
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=28.70 E-value=1.2e+02 Score=21.39 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=36.8
Q ss_pred eeeEEEecccccCceEEEEC--------------CeeE-EEEEeeEecCCCCccc-------EEEEEEEEccCCcEEEEE
Q 034069 17 SKTFPQQAGTIRKNGYIVIK--------------GRPC-KVVEVSTSKTGKHGHA-------KCHFVGIDIFNGKKLEDI 74 (104)
Q Consensus 17 ~~t~~i~~~~lkkG~~I~i~--------------g~p~-~Vve~~~~KpGKhG~A-------~vr~k~knl~TG~~~E~t 74 (104)
...|.+-+..|+.|++|... .-|- .++..--.+||+ |+. .+++..+ .+...--.
T Consensus 40 ~~~yilAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~iP~Gt~I~NIE~~pG~-gg~laRsAGt~a~ii~k---e~~~~~vr 115 (178)
T 1giy_D 40 EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGR-GGQLVRAAGTSAQVLGK---EGKYVIVR 115 (178)
T ss_pred CEEEEECccCCccccEEEECCCCccccCCCcccccCCCCCEEEeEeccCCC-CeEEEEeCCCeEEEEEe---cCCeEEEE
Confidence 36677777878888877643 2221 123333347898 543 4444444 46667778
Q ss_pred EcCCCcee
Q 034069 75 VPSSHNCD 82 (104)
Q Consensus 75 f~s~~~ve 82 (104)
++|++.-.
T Consensus 116 LPSGe~r~ 123 (178)
T 1giy_D 116 LASGEVRM 123 (178)
T ss_pred CCCCCEEE
Confidence 88887654
No 61
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=28.15 E-value=67 Score=21.39 Aligned_cols=36 Identities=6% Similarity=-0.047 Sum_probs=25.3
Q ss_pred EEEEEccCCcEEEEEEcCCCceee--cEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~--~~ve~~~~qylY 95 (104)
+.++..-+.+..+.+|+.|+.++. ..++-+.++-++
T Consensus 53 ~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~v 90 (141)
T 2rcq_A 53 FKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALV 90 (141)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEE
Confidence 556677777888888888888888 655555554444
No 62
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=27.98 E-value=1.4e+02 Score=23.41 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=32.9
Q ss_pred cCceEEEECCeeE---------EEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceee
Q 034069 28 RKNGYIVIKGRPC---------KVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83 (104)
Q Consensus 28 kkG~~I~i~g~p~---------~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~ 83 (104)
..++.+++||... -.+ .++||+ .+|+++.|.-.-..+...+ .+.++.+
T Consensus 163 ~~~d~~liNG~~~~~~~~~~~~~~~---~v~~g~----~~RlRliN~~~~~~~~~~i-~gh~~~v 219 (503)
T 1hfu_A 163 AQPDATLINGKGRYVGGPAAELSIV---NVEQGK----KYRMRLISLSCDPNWQFSI-DGHELTI 219 (503)
T ss_dssp -CCSEEEETTBCCBTTCCCCCCCEE---EECTTC----EEEEEEEECCSSCCEEEEE-TTCCEEE
T ss_pred CCCCEEEECcccccCCCCCCcceEE---EEcCCC----EEEEEEEecCCcccEEEEE-cCceEEE
Confidence 3588999999754 233 357887 6899999998777666665 3455544
No 63
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=27.85 E-value=52 Score=21.77 Aligned_cols=36 Identities=8% Similarity=-0.145 Sum_probs=20.7
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+.+..+.+|+-|+.++.-.++-+.++-++
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~v 86 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIV 86 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEE
Confidence 444455555666666776666666555555554443
No 64
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=27.39 E-value=45 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.9
Q ss_pred cccCceEEEECCeeEEEEEe
Q 034069 26 TIRKNGYIVIKGRPCKVVEV 45 (104)
Q Consensus 26 ~lkkG~~I~i~g~p~~Vve~ 45 (104)
++++|+.+.+.+.|+.|+++
T Consensus 103 ~~~~G~~~~~~~~~~~V~~v 122 (151)
T 1ix5_A 103 EPEEGMVILAEGIPATITEV 122 (151)
T ss_dssp CCCTTEEEESSSCEEEEEEE
T ss_pred cccccCEEEECCeEEEEEEE
Confidence 57789999999999988763
No 65
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=27.09 E-value=46 Score=21.82 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=22.0
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+.+..+.+|+-|+.++...++-+.++-++
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~ 84 (131)
T 1fdq_A 49 VVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVV 84 (131)
T ss_dssp EEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEE
T ss_pred EEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEE
Confidence 445556666666777777777766655555544444
No 66
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=26.66 E-value=62 Score=21.28 Aligned_cols=36 Identities=0% Similarity=-0.151 Sum_probs=25.4
Q ss_pred EEEEEccCCcEEEEEEcCCCceee--cEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~--~~ve~~~~qylY 95 (104)
+.++..-+.+..+.+|+-|+.++. ..++-+.++-++
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~v 86 (134)
T 1crb_A 49 MIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTV 86 (134)
T ss_dssp EEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEE
T ss_pred EEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEE
Confidence 566677777788888888888888 666655554444
No 67
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=26.37 E-value=1e+02 Score=19.96 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=26.6
Q ss_pred EEEEEc-cCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDI-FNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl-~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++.. -+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 84 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQ 84 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCE
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 555666 6677888888888888877777666655544
No 68
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=26.05 E-value=1.6e+02 Score=23.28 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=33.8
Q ss_pred cCceEEEECCeeE----------EEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeec
Q 034069 28 RKNGYIVIKGRPC----------KVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (104)
Q Consensus 28 kkG~~I~i~g~p~----------~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~ 84 (104)
..++.+.+||.+. -.+ .++||+ .+|+++.|.-.-..+...+. ++++.++
T Consensus 189 ~~~d~~liNG~~~~~~~~~~~~~~~~---~v~~G~----~~RlRliNa~~~~~~~~~i~-gh~~~vi 247 (521)
T 1v10_A 189 PAPDTTLINGLGRNSANPSAGQLAVV---SVQSGK----RYRFRIVSTSCFPNYAFSID-GHRMTVI 247 (521)
T ss_dssp SCCSEEEETTBCCCSSCGGGSCCCEE---EECTTC----EEEEEEEECCSSCCEEEEET-TCCEEEE
T ss_pred CCCCEEEECCcccCCCCCCCCCceEE---EECCCC----EEEEEEEecCCcccEEEEEC-CCeEEEE
Confidence 4578999999754 233 457887 68999999987776666653 4455443
No 69
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=25.86 E-value=73 Score=21.67 Aligned_cols=36 Identities=8% Similarity=-0.208 Sum_probs=24.5
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+.+..+.+|+-|+.+|...++-+.++-++
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~v 105 (152)
T 3q6l_A 70 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTI 105 (152)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEE
Confidence 556666777777888888888877666655555444
No 70
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=24.84 E-value=1.7e+02 Score=21.11 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=24.6
Q ss_pred ccCceEEEECCeeEEEEE---------eeEecCCCCcccEEEEEEEEcc
Q 034069 27 IRKNGYIVIKGRPCKVVE---------VSTSKTGKHGHAKCHFVGIDIF 66 (104)
Q Consensus 27 lkkG~~I~i~g~p~~Vve---------~~~~KpGKhG~A~vr~k~knl~ 66 (104)
+.+|+.+.++|.+..|++ +.|.=.|| .-...+++.++.
T Consensus 103 ~~vG~~~~~~~~~g~V~~v~~~~V~vD~NHPLAGk--~L~F~vev~~v~ 149 (231)
T 3prb_A 103 PIKGLTITIDGIPGKIVSINSGRVLVDFNHELAGK--EVKYRIKIEEVV 149 (231)
T ss_dssp CCTTCEEEETTEEEEEEEEETTEEEEECSCTTTTC--CEEEEEEEEEEC
T ss_pred CCCCcEEEecCCCEEEEEEcCCEEEEeCCCccCCC--EEEEEEEEEEEe
Confidence 456999999999988864 44433454 234456666553
No 71
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=24.58 E-value=80 Score=20.64 Aligned_cols=36 Identities=6% Similarity=-0.093 Sum_probs=23.5
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecE--EEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPH--VTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~--ve~~~~qylY 95 (104)
+.++..-+.+..+.+|+.|+.++... ++-+.++-++
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~ 86 (133)
T 1lpj_A 49 FTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLV 86 (133)
T ss_dssp EEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEE
T ss_pred EEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEE
Confidence 55666667777778888888887655 5545444433
No 72
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=24.46 E-value=82 Score=20.95 Aligned_cols=36 Identities=8% Similarity=-0.208 Sum_probs=22.8
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+.+..+.+|+.|+.++....+-+.++-++
T Consensus 57 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~v 92 (139)
T 3p6d_A 57 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTI 92 (139)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEE
Confidence 555666666777777777777776655555444443
No 73
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=24.19 E-value=68 Score=21.12 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=26.6
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++...+.+..+.+|+-|+.++...++-+.++-+..
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 87 (132)
T 3vg7_A 51 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQ 87 (132)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECE
T ss_pred EEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEE
Confidence 5566666777788888888888877777666665553
No 74
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=24.07 E-value=64 Score=22.14 Aligned_cols=36 Identities=11% Similarity=-0.141 Sum_probs=23.9
Q ss_pred EEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+.+..+.+|+-|+.+|....+-+.++-++
T Consensus 75 ~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~v 110 (158)
T 3rsw_A 75 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIV 110 (158)
T ss_dssp EEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEE
T ss_pred EEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEE
Confidence 456666677777778888777776666655555444
No 75
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=23.93 E-value=84 Score=19.81 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=22.7
Q ss_pred cccEEEEEEEEccCCcEEEEEEcCCCcee
Q 034069 54 GHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (104)
Q Consensus 54 G~A~vr~k~knl~TG~~~E~tf~s~~~ve 82 (104)
+.+.+++.+|++ +|++..-.+.+.++|.
T Consensus 18 ~~~mIqI~Vk~~-~Gkk~~v~v~p~DTI~ 45 (93)
T 3plu_A 18 GSHMIEVVVNDR-LGKKVRVKCLGEDSVG 45 (93)
T ss_dssp --CEEEEEEECT-TSCEEEEEEETTSBHH
T ss_pred CCceEEEEEECC-CCCEEEEEECCcCHHH
Confidence 567888888885 9999999999999874
No 76
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=23.58 E-value=68 Score=21.23 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=25.8
Q ss_pred EEEEEc-cCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069 60 FVGIDI-FNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (104)
Q Consensus 60 ~k~knl-~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~ 96 (104)
+.++.. -+.+..+.+|+.|+.++...++-+.++-++.
T Consensus 52 ~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt 89 (136)
T 2lba_A 52 FTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVK 89 (136)
T ss_dssp EEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEE
Confidence 555666 6667788888888888877776666655554
No 77
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=23.23 E-value=1.3e+02 Score=18.07 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=14.9
Q ss_pred cccccCceEEEEC---CeeEEE
Q 034069 24 AGTIRKNGYIVIK---GRPCKV 42 (104)
Q Consensus 24 ~~~lkkG~~I~i~---g~p~~V 42 (104)
.-+|++|++|.++ ++|..|
T Consensus 33 ll~L~~GdVi~Ld~~~~e~v~i 54 (84)
T 1o9y_A 33 LRRLDAGTILEVTGISPGHATL 54 (84)
T ss_dssp HHTCCTTCEEEECSSCTTEEEE
T ss_pred HhcCCCCCEEEeCCCCCCCEEE
Confidence 4578999999999 567655
No 78
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=22.84 E-value=34 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=18.8
Q ss_pred ecccccCceEEEECCeeEEEEEe
Q 034069 23 QAGTIRKNGYIVIKGRPCKVVEV 45 (104)
Q Consensus 23 ~~~~lkkG~~I~i~g~p~~Vve~ 45 (104)
...+|++|+-|.++..-+.|+++
T Consensus 52 d~~~LkpG~rVaLn~~s~~Iv~v 74 (85)
T 3h43_A 52 NPDDLAPGKRVCLNQQTLTVVDV 74 (85)
T ss_dssp CGGGCCTTCEEEECTTTCCEEEE
T ss_pred CHHHCCCCCEEEECCcccCHhhh
Confidence 34789999999999987777764
No 79
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=22.61 E-value=1.4e+02 Score=20.15 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=9.7
Q ss_pred ccCceEEEECCeeE
Q 034069 27 IRKNGYIVIKGRPC 40 (104)
Q Consensus 27 lkkG~~I~i~g~p~ 40 (104)
|+||+.|.+.|.+-
T Consensus 74 l~KG~~V~VeG~L~ 87 (158)
T 3tqy_A 74 LRKGSKIYIEGSLR 87 (158)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred cCCCCEEEEEEEEE
Confidence 67777777777653
No 80
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=22.37 E-value=1.8e+02 Score=22.99 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=31.7
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCC
Q 034069 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH 79 (104)
Q Consensus 28 kkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~ 79 (104)
..|+.+.+||.++-.+.+ +++ ++|+++.|.-..+.+...+...+
T Consensus 252 ~~gd~~~vNG~~~p~~~v---~~~-----~yRlRliNas~~~~~~l~i~~h~ 295 (612)
T 3gyr_A 252 FFGPYTTVNGRIWPYADV---DDG-----WYRLRLVNASNARIYNLVLIDED 295 (612)
T ss_dssp CCCSEEEETTEESCEEEE---ESS-----EEEEEEEECCSSCCEEEEEECTT
T ss_pred ccCceeeecCCccceEec---cCc-----EEEEEEEeccCCcceeEEEccCC
Confidence 357899999998766643 333 48999999887777777665543
No 81
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=22.23 E-value=54 Score=21.65 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=17.9
Q ss_pred ecccccCceEEEECCeeEEEEEee
Q 034069 23 QAGTIRKNGYIVIKGRPCKVVEVS 46 (104)
Q Consensus 23 ~~~~lkkG~~I~i~g~p~~Vve~~ 46 (104)
..++-|-+..|.++|.+|.+|+-.
T Consensus 3 ~~~~~~~~~~i~i~~~~yelv~n~ 26 (110)
T 2kl5_A 3 GMSEKRGEIMILIQNAEFELVHNF 26 (110)
T ss_dssp TTTCCCCSCEEEETTEEEEEEEEE
T ss_pred ccccccCCCEEEECCEEEEEEehh
Confidence 345556566899999999999743
No 82
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=22.19 E-value=74 Score=20.19 Aligned_cols=19 Identities=0% Similarity=0.172 Sum_probs=15.9
Q ss_pred eEEEecccccCceEEEECC
Q 034069 19 TFPQQAGTIRKNGYIVIKG 37 (104)
Q Consensus 19 t~~i~~~~lkkG~~I~i~g 37 (104)
...+++.+|.+|+.|.+.-
T Consensus 22 ~~~i~~~~l~~GDiv~v~~ 40 (113)
T 2hc8_A 22 EIAVPVEEVAVGDIVIVRP 40 (113)
T ss_dssp EEEEEGGGCCTTCEEEECT
T ss_pred EEEEEHHHCCCCCEEEECC
Confidence 3569999999999999853
No 83
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=22.18 E-value=1.3e+02 Score=20.19 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=38.1
Q ss_pred eeeEEEecccccCceEEEEC--------------Cee-EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEE
Q 034069 17 SKTFPQQAGTIRKNGYIVIK--------------GRP-CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIV 75 (104)
Q Consensus 17 ~~t~~i~~~~lkkG~~I~i~--------------g~p-~~Vve~~~~KpGKhG~------A~vr~k~knl~TG~~~E~tf 75 (104)
...|.+-+..++.|+.|... .-| =.++..--.+||+.|+ +.+++..+ .++..--.+
T Consensus 40 ~k~yIlAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~k---e~~~~~vrL 116 (137)
T 1rl2_A 40 EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK---EGKYVIVRL 116 (137)
T ss_dssp CEEEEECCTTCCTTCEECBSTTCCSCTTCEEEGGGSCTTCEEESEESSTTSCEEESSSSSCCEEEEEE---ETTEEEEEC
T ss_pred CEEEEEecccCccceEEEECCccccccCCEeehhhCCCCCEEEEEEccCCCCcEEEEeCCCeEEEEEE---cCCEEEEEC
Confidence 35677777777777777542 222 1223333447888432 45666666 367777888
Q ss_pred cCCCcee
Q 034069 76 PSSHNCD 82 (104)
Q Consensus 76 ~s~~~ve 82 (104)
+|++.-.
T Consensus 117 PSGe~r~ 123 (137)
T 1rl2_A 117 ASGEVRM 123 (137)
T ss_dssp TTSCEEE
T ss_pred CCCCeEE
Confidence 8887644
No 84
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.89 E-value=30 Score=22.22 Aligned_cols=26 Identities=8% Similarity=0.209 Sum_probs=21.2
Q ss_pred EecccccCceEEEECCeeEEEEEeeE
Q 034069 22 QQAGTIRKNGYIVIKGRPCKVVEVST 47 (104)
Q Consensus 22 i~~~~lkkG~~I~i~g~p~~Vve~~~ 47 (104)
+...+|++|+-|-++..-+.|+++.-
T Consensus 70 Vd~~~LkpG~rVaLn~~s~~Iv~iLp 95 (109)
T 2wg5_A 70 INEEELKPGARVALNQQTLAIVNVLP 95 (109)
T ss_dssp SCTTTCCTTCEEEEETTTCCEEEEEC
T ss_pred cCHHHCCCCCEEEECCcceEeEEeCC
Confidence 44678999999999998888887653
No 85
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=21.79 E-value=1.3e+02 Score=19.81 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=21.9
Q ss_pred EEEecccccCce--EEEECCeeEEEEEe
Q 034069 20 FPQQAGTIRKNG--YIVIKGRPCKVVEV 45 (104)
Q Consensus 20 ~~i~~~~lkkG~--~I~i~g~p~~Vve~ 45 (104)
..+..++|..|. .+.+.|.|+-|+.-
T Consensus 4 ~~vd~s~l~~g~~~~v~wrgkPv~i~~r 31 (141)
T 2nwf_A 4 IFVDVSSVEPGVQLTVKFLGKPIFIRRR 31 (141)
T ss_dssp EEEECTTCCTTEEEEEEETTEEEEEEEC
T ss_pred EEEecccCCCCCEEEEEECCEEEEEEEC
Confidence 457889999998 55889999999875
No 86
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=21.75 E-value=73 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.5
Q ss_pred ccccCceEEEECCeeEEEEEeeE
Q 034069 25 GTIRKNGYIVIKGRPCKVVEVST 47 (104)
Q Consensus 25 ~~lkkG~~I~i~g~p~~Vve~~~ 47 (104)
.-+|.|+.|.++|.-..|.++..
T Consensus 127 ~pf~vGD~I~i~~~~G~V~~I~l 149 (285)
T 3udc_A 127 DQFSVGDYVTINGISGTVEEIGL 149 (285)
T ss_dssp TSCCTTCEEEETTEEEEEEEECS
T ss_pred CCccCCCEEEECCEEEEEEEeee
Confidence 46899999999999999988543
No 87
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=21.70 E-value=50 Score=21.98 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=24.7
Q ss_pred eeEEEecccccCceEEEECCeeEEEEEeeEec
Q 034069 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSK 49 (104)
Q Consensus 18 ~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~K 49 (104)
..|.+..++|++|....++|.|=.-..++..+
T Consensus 53 ksYL~Dp~~f~~G~~Y~i~~~~~~~F~V~yln 84 (115)
T 2yxy_A 53 KAYMLNPADFHPGEIYEIEGAPGEYFKVRYLK 84 (115)
T ss_dssp HHTTSCGGGCCTTCEEEETTEEEEEEEEEEEE
T ss_pred HHHcCCHhhccCCCEEEecCCCCceEEEEEEe
Confidence 46778999999999999998876545555544
No 88
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=21.56 E-value=1.4e+02 Score=20.86 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=31.1
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcC
Q 034069 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (104)
Q Consensus 21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s 77 (104)
.++.-.+++|+.|.+. +....+++ -++.+.|+-+|+.+.+++.+
T Consensus 51 ~~~~~~v~~GD~i~~t--------V~~~s~~~-----g~~tleN~ttg~~~t~t~t~ 94 (173)
T 1y43_B 51 DFSDITISEGDSIKVT--------VEATSKSS-----GSATVENLTTGQSVTHTFSG 94 (173)
T ss_dssp EETTCCCCTTCEEEEE--------EEEEETTE-----EEEEEEETTTTEEEEEEECS
T ss_pred ccccceeCCCCEEEEE--------EEEcCCCc-----EEEEEEECCCCEEEEEEEcC
Confidence 3444567888887765 23333333 36889999999999999976
No 89
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=21.05 E-value=78 Score=20.61 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=10.5
Q ss_pred cccCceEEEECC
Q 034069 26 TIRKNGYIVIKG 37 (104)
Q Consensus 26 ~lkkG~~I~i~g 37 (104)
.|++|+.|.+++
T Consensus 34 ~i~vGD~I~f~~ 45 (113)
T 1xne_A 34 DIKRGDKIIFND 45 (113)
T ss_dssp TCCTTCEEEETT
T ss_pred ccCCCCEEEEcc
Confidence 468999999987
No 90
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=20.74 E-value=72 Score=19.34 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.7
Q ss_pred ceEEEECCeeEEEEEeeEecCCC
Q 034069 30 NGYIVIKGRPCKVVEVSTSKTGK 52 (104)
Q Consensus 30 G~~I~i~g~p~~Vve~~~~KpGK 52 (104)
-..|++||+-++|.++.. +||.
T Consensus 7 ~~~V~ien~~~rV~r~~i-~PG~ 28 (98)
T 3lag_A 7 KSEIQIDNDEVRVTEWRL-PPGS 28 (98)
T ss_dssp EEEEEEESSSEEEEEEEE-CTTE
T ss_pred eeeEEEcCCeEEEEEEEE-CCCC
Confidence 456899999999998876 6773
No 91
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=20.68 E-value=58 Score=21.72 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=24.6
Q ss_pred EEEEEccC-CcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069 60 FVGIDIFN-GKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (104)
Q Consensus 60 ~k~knl~T-G~~~E~tf~s~~~ve~~~ve~~~~qylY 95 (104)
+.++...+ .+..+.+|+-|+.++...++-+.++-+.
T Consensus 51 ~tikt~s~~~k~~~~~F~lGeEfee~t~dgrk~ks~v 87 (138)
T 3elx_A 51 FTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGIV 87 (138)
T ss_dssp EEEEEEEGGGEEEEEEEETTSCEEEECTTSCEEEECC
T ss_pred EEEEEEEcCCceEEEEEEcCCcEEeecCCCCEEEEEE
Confidence 55666666 6778888888888887666655555443
No 92
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.56 E-value=1.5e+02 Score=17.87 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=21.2
Q ss_pred ecccccCceEEEE-----CCeeEEEEEeeEecCCC
Q 034069 23 QAGTIRKNGYIVI-----KGRPCKVVEVSTSKTGK 52 (104)
Q Consensus 23 ~~~~lkkG~~I~i-----~g~p~~Vve~~~~KpGK 52 (104)
....|+.|+.|.+ ++.-|.|+.++...|.+
T Consensus 44 ~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~~~~ 78 (82)
T 2l55_A 44 LPQGLKAGDRVAFSFRLDPHGMATLVTVAPQVQTA 78 (82)
T ss_dssp CCSSCSTTCEEEEEEEEETTTEEEEEEEEECCSSC
T ss_pred HhhcCCCCCEEEEEEEECCCCeEEEEEEEecCCCC
Confidence 3678999998865 33258888888776654
No 93
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=20.17 E-value=1.5e+02 Score=20.44 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=25.3
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEc
Q 034069 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDI 65 (104)
Q Consensus 28 kkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl 65 (104)
.++..+.+||- |+|+++-..+ |+.|...+|++|+-+
T Consensus 120 ~p~~gyrYDGL-Y~V~~~w~e~-g~~G~~v~kf~L~R~ 155 (167)
T 3q0b_X 120 VVAKNYVYDGL-YLVEEYWEET-GSHGKLVFKFKLRRI 155 (167)
T ss_dssp ---CCEEEEEE-EEEEEEEEEE-CTTSCEEEEEEEEEC
T ss_pred CCCccEEECeE-EEEeeeEEee-CCCCcEEEEEEEEEc
Confidence 34556778875 9999986655 666888889998765
No 94
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=20.17 E-value=1.5e+02 Score=18.54 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=8.9
Q ss_pred ccCceEEEECCeeE
Q 034069 27 IRKNGYIVIKGRPC 40 (104)
Q Consensus 27 lkkG~~I~i~g~p~ 40 (104)
|+||+.|.+.|.+-
T Consensus 68 l~KG~~V~V~G~l~ 81 (116)
T 3vdy_A 68 CQKGSLVGVSGRIQ 81 (116)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEE
Confidence 66666666666654
Done!