BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034071
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 76.3 bits (186), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 12/89 (13%)
Query: 4 LQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRL 63
++IGN+H +E VGRELL+ L ++C N DP V + ++ +HI PSMNPDGY +
Sbjct: 64 FKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQE 123
Query: 64 G---------NENNTVLNRDFP---YQVT 80
G N NN LNR+FP +QVT
Sbjct: 124 GDRGGTVGRNNSNNYDLNRNFPDQFFQVT 152
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 65.5 bits (158), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 4 LQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKR- 62
+++I N+H DE VGR+LL+ +A ++ NH + + + + +++ P+MNPDGYAL +
Sbjct: 94 VKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQE 153
Query: 63 -----------LGNENNTVLNRDFP 76
GN N LNRDFP
Sbjct: 154 GNCESLPNYVGRGNAANIDLNRDFP 178
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 9/82 (10%)
Query: 4 LQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGY-ALKR 62
+++ N+H DE VGRELL+ L +++ + KDP + + + +HI PSMNPDG+ A+K+
Sbjct: 59 FKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKK 118
Query: 63 ------LGNE--NNTVLNRDFP 76
+G E N LNR+FP
Sbjct: 119 PDCYYSIGRENYNQYDLNRNFP 140
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 15/87 (17%)
Query: 4 LQFIGNVHADEPVGRELLILLANWICNN--HMKDPLVRLIAENMHLHIFPSMNPDGYALK 61
++++GN+H +E +GREL++ L+ ++C + +V+LI ++ +HI PSMNPDGY +
Sbjct: 60 VKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLI-QDTRIHILPSMNPDGYEVA 118
Query: 62 RL------------GNENNTVLNRDFP 76
N N LNR+FP
Sbjct: 119 AAQGPNKPGYLVGRNNANGVDLNRNFP 145
>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
Length = 310
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 8 GNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGN 65
+H+ E + + I A I +++ +DP + I E M + + P NPDGY + N
Sbjct: 67 AGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQN 124
>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 308
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 8 GNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGN 65
+H+ E + + I A I +++ +DP + I E M + + P NPDGY + N
Sbjct: 65 AGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQN 122
>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
Hexapeptide
Length = 305
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 8 GNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGN 65
+H+ E + + I A I +++ +DP + I E M + + P NPDGY + N
Sbjct: 63 AGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQN 120
>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
Carboxypeptidase Inhibitor And The Human
Carboxypeptidase A2 (Lci-Cpa2)
Length = 303
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 9 NVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGN 65
+HA E V + + AN I +++ KDP + I + + + + P NPDGY + N
Sbjct: 60 GIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKN 116
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 10 VHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGN 65
+H+ E + + I A I +++ +DP + I E M + + P NPDGY + N
Sbjct: 163 IHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQN 218
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 10 VHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGN 65
+HA E V + + AN I +++ KDP + I + + + + P NPDGY + N
Sbjct: 160 IHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKN 215
>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
Length = 367
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPDG-YALKRLGNEN-NTVLNRDFP----------YQV 79
RL ENMH I P + PD +A+ RL N+ N LN D P YQ+
Sbjct: 248 RLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFKSTLDTDYQM 307
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 308 TKRDMGFTEEEFKRLNIN 325
>pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
Length = 363
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPDG-YALKRLGNEN-NTVLNRDFP----------YQV 79
RL ENMH I P + PD +A+ R N+ N LN D P YQ+
Sbjct: 251 RLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQM 310
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 311 TKKDMGFTEEEFKRLNIN 328
>pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
Length = 357
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPDG-YALKRLGNEN-NTVLNRDFP----------YQV 79
RL ENMH I P + PD +A+ R N+ N LN D P YQ+
Sbjct: 251 RLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQM 310
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 311 TKKDMGFTEEEFKRLNIN 328
>pdb|1NDV|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr117016
pdb|1NDW|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr221647
pdb|1NDY|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr230513
pdb|1NDZ|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235999
pdb|1O5R|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor
pdb|1UML|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor Fr233624
pdb|1V79|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1V7A|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1VFL|A Chain A, Adenosine Deaminase
pdb|1WXY|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|1WXZ|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|2E1W|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|2Z7G|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With Ehna
Length = 356
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPDG-YALKRLGNEN-NTVLNRDFP----------YQV 79
RL ENMH I P + PD +A+ R N+ N LN D P YQ+
Sbjct: 250 RLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQM 309
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 310 TKKDMGFTEEEFKRLNIN 327
>pdb|1KRM|A Chain A, Crystal Structure Of Bovine Adenosine Deaminase Complexed
With 6-Hydroxyl-1,6-Dihydropurine Riboside
pdb|1QXL|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235380
Length = 356
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPDG-YALKRLGNEN-NTVLNRDFP----------YQV 79
RL ENMH I P + PD +A+ R N+ N LN D P YQ+
Sbjct: 250 RLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQM 309
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 310 TKKDMGFTEEEFKRLNIN 327
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN D P YQ+
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLIFKSTLDTDYQM 307
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 308 TKKDMGFTEEEFKRLNIN 325
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN D P YQ+
Sbjct: 252 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLEFKSTLDTDYQM 311
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 312 TKKDMGFTEEEFKRLNIN 329
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN D P YQ+
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQM 307
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 308 TKKDMGFTEEEFKRLNIN 325
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN D P YQ+
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQM 307
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 308 TKKDMGFTEEEFKRLNIN 325
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN D P YQ+
Sbjct: 251 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQM 310
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 311 TKKDMGFTEEEFKRLNIN 328
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN D P YQ+
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQM 307
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 308 TKKDMGFTEEEFKRLNIN 325
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN D P YQ+
Sbjct: 251 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQM 310
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 311 TKKDMGFTEEEFKRLNIN 328
>pdb|4AXV|A Chain A, Biochemical And Structural Characterization Of The Mpaa
Amidase As Part Of A Conserved Scavenging Pathway For
Peptidoglycan Derived Peptides In Gamma-Proteobacteria
Length = 243
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 37 LVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQ 78
L L AE + + S NPD L N N LNR FP Q
Sbjct: 69 LRSLPAECLKHDVILSXNPDANQLGTRANANQVDLNRAFPTQ 110
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 9 NVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYAL 60
+H+ E + + + A ++ +DP I ++M + + NPDG+A
Sbjct: 67 GIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 9 NVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYAL 60
+H+ E + + + A ++ +DP I ++M + + NPDG+A
Sbjct: 67 GIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 9 NVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYAL 60
+H+ E + + + A ++ +DP I ++M + + NPDG+A
Sbjct: 67 GIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 9 NVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYAL 60
+H+ E + + + A ++ +DP I ++M + + NPDG+A
Sbjct: 67 GIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 9 NVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYAL 60
+H+ E + + + A ++ +DP I ++M + + NPDG+A
Sbjct: 67 GIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 39 RLIAENMHLHIFP-------SMNPD-GYALKRLGNEN-NTVLNRDFP----------YQV 79
RL+ ENMH + P + +P +A+ R N+ N LN + P YQ+
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTEDPLIFKSTLDTDYQM 307
Query: 80 TSCNFGFLTSFFMKTKLN 97
T + GF F + +N
Sbjct: 308 TKKDMGFTEEEFKRLNIN 325
>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase
(Yp_103406.1) From Burkholderia Mallei Atcc 23344 At
2.49 A Resolution
Length = 403
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 35 DPLVRLIAENMHLHIFPSMNPDGYALKRL-GNENNTVLNRDF 75
DP+ R + ++ +I P+ NPDG L N LNR++
Sbjct: 216 DPVARKLYDHATFYIVPNXNPDGSVHGNLRTNAAGANLNREW 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,151,626
Number of Sequences: 62578
Number of extensions: 117064
Number of successful extensions: 239
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 31
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)