Query 034071
Match_columns 104
No_of_seqs 113 out of 1117
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03863 M14_CPD_II The second 100.0 1.4E-33 3E-38 219.1 10.6 102 2-103 58-170 (375)
2 cd03865 M14_CPE_H Peptidase M1 100.0 2.8E-33 6E-38 218.8 10.6 102 2-103 57-196 (402)
3 cd03869 M14_CPX_like Peptidase 100.0 7.5E-33 1.6E-37 216.5 10.3 102 2-103 57-200 (405)
4 cd03866 M14_CPM Peptidase M14 100.0 8.5E-33 1.8E-37 214.7 10.4 102 2-103 57-168 (376)
5 cd03864 M14_CPN Peptidase M14 100.0 1.2E-32 2.5E-37 214.9 10.4 102 2-103 53-188 (392)
6 cd06245 M14_CPD_III The third 100.0 3.6E-32 7.7E-37 210.4 10.9 102 2-103 54-166 (363)
7 cd03868 M14_CPD_I The first ca 100.0 4.4E-32 9.5E-37 210.1 10.8 102 2-103 53-170 (372)
8 cd03867 M14_CPZ Peptidase M14- 100.0 1.7E-31 3.6E-36 208.5 10.3 102 2-103 53-190 (395)
9 cd06227 Peptidase_M14-like_2 A 100.0 2.2E-31 4.7E-36 199.4 10.0 101 2-102 53-177 (272)
10 cd06246 M14_CPB2 Peptidase M14 100.0 7.1E-31 1.5E-35 198.9 9.5 99 2-100 54-182 (300)
11 cd03871 M14_CPB Peptidase M14 100.0 1.1E-30 2.5E-35 197.8 8.9 100 2-101 54-183 (300)
12 cd06229 M14_Endopeptidase_I Pe 100.0 1.6E-30 3.4E-35 192.6 9.3 100 2-101 17-164 (255)
13 cd06226 M14_CPT_like Peptidase 100.0 2.4E-30 5.2E-35 195.5 10.3 98 2-99 43-174 (293)
14 cd06248 M14_CPA_CPB_like Pepti 100.0 2.2E-30 4.7E-35 196.4 9.0 98 2-99 55-182 (304)
15 cd03870 M14_CPA Peptidase M14 100.0 3E-30 6.6E-35 195.5 9.7 97 2-98 54-180 (301)
16 cd03872 M14_CPA6 Carboxypeptid 100.0 2.5E-30 5.3E-35 196.0 8.9 97 2-98 51-177 (300)
17 cd06247 M14_CPO Peptidase M14 100.0 3.1E-30 6.8E-35 195.3 9.3 98 2-99 53-180 (298)
18 cd03862 Peptidase_M14-like_7 A 100.0 9.1E-30 2E-34 190.8 11.0 97 2-98 25-144 (273)
19 cd03858 M14_CP_N-E_like Carbox 100.0 6E-30 1.3E-34 197.9 10.1 101 2-102 53-170 (374)
20 cd03859 M14_CPT Peptidase M14- 100.0 6.4E-30 1.4E-34 192.8 9.3 101 2-102 55-192 (295)
21 KOG2650 Zinc carboxypeptidase 100.0 7E-30 1.5E-34 200.2 8.2 97 2-98 170-298 (418)
22 PF00246 Peptidase_M14: Zinc c 100.0 3.7E-29 8E-34 185.8 8.9 100 2-102 47-171 (279)
23 smart00631 Zn_pept Zn_pept. 100.0 1.1E-28 2.4E-33 184.3 9.8 101 2-102 50-176 (277)
24 KOG2649 Zinc carboxypeptidase 100.0 6.8E-29 1.5E-33 195.6 7.9 103 1-103 120-252 (500)
25 cd06228 Peptidase_M14-like_3 A 100.0 1.8E-28 4E-33 187.8 10.0 97 2-99 29-180 (332)
26 cd06905 Peptidase_M14-like_8 A 100.0 7.1E-28 1.5E-32 186.4 10.5 97 2-98 56-249 (360)
27 cd03860 M14_CP_A-B_like The Pe 99.9 5.7E-28 1.2E-32 182.0 9.1 95 2-98 50-174 (294)
28 cd00596 Peptidase_M14_like The 99.9 2.8E-27 6.2E-32 167.6 9.0 95 4-101 1-97 (196)
29 cd06237 M14_Nna1_like_3 A bact 99.9 4.6E-27 9.9E-32 173.8 9.8 89 2-98 52-141 (244)
30 cd06244 Peptidase_M14-like_1_7 99.9 3.9E-26 8.4E-31 170.6 9.7 96 2-102 53-162 (268)
31 cd06243 Peptidase_M14-like_1_6 99.9 6E-26 1.3E-30 167.2 10.2 90 2-98 30-119 (236)
32 cd06239 Peptidase_M14-like_1_2 99.9 7.7E-26 1.7E-30 166.2 10.3 91 2-99 34-124 (231)
33 cd06904 M14_MpaA_like Peptidas 99.9 4.4E-26 9.6E-31 161.2 8.6 88 4-100 1-101 (178)
34 cd06234 M14_Nna1_like_1 A bact 99.9 9.4E-26 2E-30 168.4 10.5 95 2-100 56-151 (263)
35 cd03856 M14_Nna1_like Peptidas 99.9 1.1E-25 2.5E-30 168.3 9.3 92 2-98 54-146 (269)
36 cd06238 Peptidase_M14-like_1_1 99.9 4.2E-25 9.2E-30 165.5 9.8 94 2-102 49-169 (271)
37 cd03857 Peptidase_M14-like_1 P 99.9 1E-24 2.3E-29 159.2 9.4 89 2-98 32-120 (226)
38 cd06908 M14_AGBL4_like Peptida 99.9 1E-24 2.2E-29 162.7 9.5 92 2-98 44-136 (261)
39 cd06242 Peptidase_M14-like_1_5 99.9 9.9E-25 2.1E-29 163.2 9.0 88 2-98 55-142 (268)
40 cd06235 M14_Nna1_like_2 Subgro 99.9 1.5E-24 3.2E-29 161.4 9.4 92 2-98 46-138 (258)
41 cd06241 Peptidase_M14-like_1_4 99.9 1.8E-24 4E-29 161.6 8.5 90 2-101 49-153 (266)
42 PRK10602 murein peptide amidas 99.9 1.6E-24 3.4E-29 159.8 7.8 86 2-99 40-149 (237)
43 cd06231 Peptidase_M14-like_4 A 99.9 4.7E-24 1E-28 157.1 9.4 84 2-98 43-126 (236)
44 cd06236 M14_AGBL5_like Peptida 99.9 3E-23 6.6E-28 157.5 9.5 93 2-98 68-161 (304)
45 cd06240 Peptidase_M14-like_1_3 99.9 9.9E-23 2.1E-27 152.8 8.8 99 2-103 58-176 (273)
46 cd06907 M14_AGBL2-3_like Pepti 99.9 4E-22 8.6E-27 148.7 8.7 88 2-94 47-135 (261)
47 cd06906 M14_Nna1 Peptidase M14 99.8 2.2E-20 4.7E-25 140.3 9.1 92 2-97 53-147 (278)
48 cd06232 Peptidase_M14-like_5 P 99.8 1.8E-19 4E-24 132.3 7.4 88 2-103 39-141 (240)
49 cd06233 Peptidase_M14-like_6 P 99.7 7.4E-18 1.6E-22 127.1 6.9 78 2-87 52-130 (283)
50 cd06251 M14_ASTE_ASPA_like_1 A 99.7 1.8E-17 3.8E-22 124.7 6.4 92 2-103 21-115 (287)
51 cd06255 M14_ASTE_ASPA_like_5 A 99.7 7.4E-17 1.6E-21 121.8 8.1 92 2-103 25-120 (293)
52 cd06230 M14_ASTE_ASPA_like The 99.7 1E-16 2.2E-21 118.4 7.8 89 4-103 1-93 (252)
53 cd06252 M14_ASTE_ASPA_like_2 A 99.7 1.2E-16 2.6E-21 121.7 6.9 92 2-103 35-130 (316)
54 cd06250 M14_PaAOTO_like An unc 99.7 4.9E-16 1.1E-20 120.4 8.6 72 2-79 28-106 (359)
55 cd06254 M14_ASTE_ASPA_like_4 A 99.6 4.1E-16 9E-21 117.3 7.0 92 2-103 18-114 (288)
56 cd06253 M14_ASTE_ASPA_like_3 A 99.6 6.5E-16 1.4E-20 117.0 8.0 96 2-101 20-116 (298)
57 PF04952 AstE_AspA: Succinylgl 99.6 5.3E-16 1.1E-20 115.7 4.9 84 2-95 3-96 (292)
58 TIGR02994 ectoine_eutE ectoine 99.6 3.7E-15 8E-20 114.2 7.8 92 2-103 48-143 (325)
59 COG2866 Predicted carboxypepti 99.4 4.2E-13 9.1E-18 104.7 6.1 73 2-77 148-222 (374)
60 PRK02259 aspartoacylase; Provi 99.4 6.7E-13 1.5E-17 100.1 6.8 83 1-95 2-89 (288)
61 PRK05324 succinylglutamate des 99.4 1.3E-12 2.8E-17 100.4 8.0 72 2-84 48-119 (329)
62 cd06256 M14_ASTE_ASPA_like_6 A 99.4 9.6E-13 2.1E-17 101.1 6.6 84 2-97 35-118 (327)
63 cd06910 M14_ASTE_ASPA_like_7 A 99.4 1.3E-12 2.9E-17 97.7 7.0 67 2-80 1-72 (272)
64 COG3608 Predicted deacylase [G 99.4 1.8E-12 3.9E-17 99.5 7.3 80 2-91 49-129 (331)
65 PF10994 DUF2817: Protein of u 99.4 1.3E-12 2.9E-17 100.8 6.2 76 3-86 53-129 (341)
66 cd06909 M14_ASPA Aspartoacylas 99.4 2E-12 4.4E-17 97.5 7.0 83 2-96 1-88 (282)
67 cd03855 M14_ASTE Peptidase M14 99.3 1.5E-11 3.1E-16 94.2 8.1 68 2-80 43-110 (322)
68 TIGR03242 arg_catab_astE succi 99.3 1.1E-11 2.5E-16 94.7 7.4 68 2-80 42-109 (319)
69 KOG3641 Zinc carboxypeptidase 99.1 1.4E-10 3.1E-15 93.8 6.9 92 2-97 430-524 (650)
70 COG2988 Succinylglutamate desu 97.6 0.00013 2.9E-09 55.7 5.3 83 3-96 45-133 (324)
71 PF09892 DUF2119: Uncharacteri 94.0 0.076 1.7E-06 38.4 3.6 46 2-60 7-52 (193)
72 COG4073 Uncharacterized protei 90.2 0.24 5.3E-06 35.4 2.3 39 5-56 18-56 (198)
73 KOG3641 Zinc carboxypeptidase 73.1 2.1 4.6E-05 35.8 1.6 43 39-83 156-199 (650)
74 PF05127 Helicase_RecD: Helica 50.3 13 0.00028 26.4 2.0 29 2-30 115-143 (177)
75 PF15061 DUF4538: Domain of un 41.5 6.4 0.00014 23.2 -0.6 24 47-70 25-48 (58)
76 PF06123 CreD: Inner membrane 35.7 8.1 0.00017 31.2 -1.0 23 53-79 244-266 (430)
77 PF00838 TCTP: Translationally 34.8 71 0.0015 22.4 3.8 20 42-61 125-144 (165)
78 PRK02395 hypothetical protein; 30.7 1.4E+02 0.0031 22.2 5.0 55 3-59 3-72 (279)
79 KOG3343 Vesicle coat complex C 29.9 1.3E+02 0.0028 21.5 4.3 49 4-52 74-122 (175)
80 PRK14985 maltodextrin phosphor 27.9 1.8E+02 0.004 25.6 5.7 52 2-56 568-619 (798)
81 PTZ00151 translationally contr 26.4 92 0.002 22.2 3.2 19 43-61 130-148 (172)
82 KOG2649 Zinc carboxypeptidase 26.3 59 0.0013 27.0 2.4 90 11-102 152-255 (500)
83 PF12444 Sox_N: Sox developmen 26.3 50 0.0011 20.8 1.6 17 36-52 64-80 (84)
84 TIGR02093 P_ylase glycogen/sta 25.5 2E+02 0.0044 25.3 5.6 52 2-56 566-617 (794)
85 PF00208 ELFV_dehydrog: Glutam 24.8 1.5E+02 0.0033 21.8 4.3 54 8-61 1-77 (244)
86 PRK11715 inner membrane protei 24.8 23 0.0005 28.7 -0.2 26 54-83 252-277 (436)
87 PF01903 CbiX: CbiX; InterPro 24.4 91 0.002 19.2 2.6 51 11-61 1-68 (105)
88 cd04300 GT1_Glycogen_Phosphory 22.9 2.3E+02 0.0049 25.0 5.4 52 2-56 569-620 (797)
89 COG0327 Uncharacterized conser 22.0 1.3E+02 0.0029 22.3 3.5 24 5-28 213-236 (250)
90 PF06283 ThuA: Trehalose utili 20.9 1.6E+02 0.0035 20.7 3.6 51 4-54 2-62 (217)
91 COG1832 Predicted CoA-binding 20.8 64 0.0014 22.3 1.4 19 42-61 39-59 (140)
92 KOG1201 Hydroxysteroid 17-beta 20.2 1.3E+02 0.0028 23.4 3.1 56 3-61 40-104 (300)
93 COG1444 Predicted P-loop ATPas 20.1 89 0.0019 27.3 2.4 29 2-30 348-376 (758)
No 1
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=100.00 E-value=1.4e-33 Score=219.07 Aligned_cols=102 Identities=39% Similarity=0.565 Sum_probs=96.4
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc---------cccCCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK---------RLGNENNTVLN 72 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~---------~R~n~~gvDLN 72 (104)
|+|+++||+||+|++|++++++|+++|+++|++|+.++.+|++++|+|+|++||||+++. +|.|++|||||
T Consensus 58 p~v~~~g~iHg~E~ig~~~~l~li~~L~~~y~~d~~v~~ll~~~~i~IvP~~NPDG~e~~~~~~~~~~~~R~n~~GVDLN 137 (375)
T cd03863 58 PEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLN 137 (375)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEeccCCchHHheecCCcccccccccCCCcccc
Confidence 889999999999999999999999999999999999999999999999999999999987 38889999999
Q ss_pred CCCCCCcCC--CCchHHHHHHHhhhhccccccc
Q 034071 73 RDFPYQVTS--CNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 73 Rnf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
||||++|.. ..+++||+|+|+|+.+.+|+|+
T Consensus 138 RNfp~~~~~~~~~~EpEt~Av~~~~~~~~f~l~ 170 (375)
T cd03863 138 RNFPDQFFQVTDPPQPETLAVMSWLKSYPFVLS 170 (375)
T ss_pred cCCccccccCCCCCcHHHHHHHHHHhhCCceEE
Confidence 999999974 4579999999999999999986
No 2
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=100.00 E-value=2.8e-33 Score=218.80 Aligned_cols=102 Identities=32% Similarity=0.574 Sum_probs=92.9
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcC-CChHHHHhhcceeEEEEecCCcchhhhc------------cccCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHM-KDPLVRLIAENMHLHIFPSMNPDGYALK------------RLGNENN 68 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~------------~R~n~~g 68 (104)
|.|+++||+||+|++|++++++++++|+++|. +|+.+++||++++|+|+|++||||+++. +|.|++|
T Consensus 57 P~v~i~g~iHg~E~ig~~~~l~l~~~L~~~y~~~d~~v~~LLd~~~i~IvP~~NPDG~e~~~~~~~~~~~w~~~R~Na~G 136 (402)
T cd03865 57 PEFKYIGNMHGNEAVGRELLIYLAQYLCNEYQKGNETIINLIHSTRIHIMPSLNPDGFEKAASQPGELKDWFVGRSNAQG 136 (402)
T ss_pred CEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCEEEEEeeeCCchHHhhhhcCccccchhhhcccccC
Confidence 88999999999999999999999999999985 5899999999999999999999999974 4899999
Q ss_pred CCCCCCCCCCcC-------------------------CCCchHHHHHHHhhhhccccccc
Q 034071 69 TVLNRDFPYQVT-------------------------SCNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 69 vDLNRnf~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
||||||||+.+. ..+.++||+|+|+|+.++|||||
T Consensus 137 vDLNRNFp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pEt~Avm~w~~~~~Fvls 196 (402)
T cd03865 137 IDLNRNFPDLDRIVYVNEREGGPNNHLLKNMKKAVDENTKLAPETKAVIHWIMDIPFVLS 196 (402)
T ss_pred cccCCCCCcccchhhhhhccCCCccccccccccccccccCCChHHHHHHHHHHhCCcEEE
Confidence 999999997521 12458999999999999999998
No 3
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=100.00 E-value=7.5e-33 Score=216.46 Aligned_cols=102 Identities=28% Similarity=0.519 Sum_probs=92.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcC-CChHHHHhhcceeEEEEecCCcchhhhc---------c---ccCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHM-KDPLVRLIAENMHLHIFPSMNPDGYALK---------R---LGNENN 68 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~---------~---R~n~~g 68 (104)
|.|+++|||||+|++|++++++++++|+++|. +|+.++++|++++|+|+|++||||++++ | |.|++|
T Consensus 57 P~v~~~g~iHgrE~ig~~~~l~li~~L~~~y~~~d~~v~~Ll~~~~i~IvP~~NPDG~e~s~~~~~~~~~Wrk~R~na~G 136 (405)
T cd03869 57 PEFRYVAGMHGNEVLGRELLLLLMQFLCQEYLAGNPRVVHLVEETRIHLLPSMNPDGYEKAYEAGSELGGWALGRWTEEG 136 (405)
T ss_pred CeEEEEcccCCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHHhcCeEEEEeeeCCchhhhhhhcCccccccccCccCCCC
Confidence 88999999999999999999999999999984 6899999999999999999999999874 3 667899
Q ss_pred CCCCCCCCC----CcCC-------------------------CCchHHHHHHHhhhhccccccc
Q 034071 69 TVLNRDFPY----QVTS-------------------------CNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 69 vDLNRnf~~----~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
||||||||+ .|+. ..+++||+|+|+|+.+++||||
T Consensus 137 VDLNRNFp~~~~~~W~~~~~~~~~~~~~~~~~Pc~~~Y~G~~~~sEPET~Av~~~i~~~~FvLS 200 (405)
T cd03869 137 IDINHNFPDLNTILWEAEDKKKVPRKVPNHHIPIPEWYLSENATVAPETRAVIAWMEKIPFVLG 200 (405)
T ss_pred ccccCCCcccccccccccccccccccccccCCCCccccCCCCCCCcHHHHHHHHHHHhCCceEE
Confidence 999999995 6752 2268999999999999999997
No 4
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=100.00 E-value=8.5e-33 Score=214.68 Aligned_cols=102 Identities=31% Similarity=0.488 Sum_probs=96.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc--------cccCCCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK--------RLGNENNTVLNR 73 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~--------~R~n~~gvDLNR 73 (104)
|+|+++||+||+|++|++++++++++|+++|.+|+.++++|++++|+|+|++||||+++. +|.|++||||||
T Consensus 57 P~v~~~~~iHg~E~ig~~~~l~l~~~L~~~y~~d~~i~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~R~N~~GvDLNR 136 (376)
T cd03866 57 PEFKYVANMHGNEVVGRELLLHLIDYLVTSYGSDPVITRLLNSTRIHIMPSMNPDGFEASKPDCYYSVGRYNKNGYDLNR 136 (376)
T ss_pred CeEEEEcccCCCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCEEEEEeccCCchhhhcccccccccccccCCCcccCc
Confidence 889999999999999999999999999999989999999999999999999999999996 799999999999
Q ss_pred CCCCCcCC--CCchHHHHHHHhhhhccccccc
Q 034071 74 DFPYQVTS--CNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 74 nf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
|||+.|+. ..+++||+|+|+|+...+|+|+
T Consensus 137 nf~~~w~~~~~~sepEt~al~~~~~~~~~~l~ 168 (376)
T cd03866 137 NFPDAFEENNEQRQPETRAVMEWLKSETFVLS 168 (376)
T ss_pred CchhhhccCCCCCcHHHHHHHHHHHhcCcEEE
Confidence 99999975 4589999999999999999875
No 5
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=99.98 E-value=1.2e-32 Score=214.89 Aligned_cols=102 Identities=33% Similarity=0.577 Sum_probs=93.4
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcC-CChHHHHhhcceeEEEEecCCcchhhhc------------cccCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHM-KDPLVRLIAENMHLHIFPSMNPDGYALK------------RLGNENN 68 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~------------~R~n~~g 68 (104)
|+|+++|++||+|++|++++++++++|+++|. .+++++++|++++|+|||++||||+++. +|.|++|
T Consensus 53 p~v~~~g~iHg~E~ig~e~ll~l~~~L~~~y~~~d~~v~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~~~~~R~Na~G 132 (392)
T cd03864 53 PEFKYVGNMHGNEVLGRELLIQLSEFLCEEYRNGNERITRLIQDTRIHILPSMNPDGYEVAARQGPEFNGYLVGRNNANG 132 (392)
T ss_pred CEEEEEcccCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCeEEEEeeeCCchHHhhhccCCCcCccccccccccC
Confidence 79999999999999999999999999999986 4889999999999999999999999873 6999999
Q ss_pred CCCCCCCCCCcC---------C------------CCchHHHHHHHhhhhccccccc
Q 034071 69 TVLNRDFPYQVT---------S------------CNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 69 vDLNRnf~~~~~---------~------------~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
||||||||+.|. + ..+++||+|+|+|++..+||||
T Consensus 133 VDLNRNFp~~~~~~~~~~~~~g~~~~~P~~~~~~~~~epET~Av~~~~~~~~fvls 188 (392)
T cd03864 133 VDLNRNFPDLNTLMYYNEKYGGPNHHLPLPDNWKSQVEPETLAVIQWMQNYNFVLS 188 (392)
T ss_pred cccccCCCcccccchhhhccCCccccCCCccccccccCHHHHHHHHHHHhcCcEEE
Confidence 999999997642 1 2468999999999999999986
No 6
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=99.98 E-value=3.6e-32 Score=210.43 Aligned_cols=102 Identities=27% Similarity=0.504 Sum_probs=95.3
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhcc---------ccCCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKR---------LGNENNTVLN 72 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~---------R~n~~gvDLN 72 (104)
|.|+++||+||+|++|++++++++++|++.|.+|+.++++|++++|+|+|++||||+++++ |.|++|||||
T Consensus 54 p~v~~~~giHg~E~ig~e~~l~l~~~L~~~y~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~~r~na~GvDLN 133 (363)
T cd06245 54 PKIRFVAGIHGNAPVGTELLLALAEFLCMNYGKNPAVTKLIDRTRIVIVPSLNPDGREKAQEKQCTSKEGHTNAHGKDLD 133 (363)
T ss_pred CEEEEECCccCCcHHHHHHHHHHHHHHHHHccCCHHHHHHHhCCEEEEEeccCCchHHHeecCCCcccCCCCCcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999873 7899999999
Q ss_pred CCCCCCcCCC--CchHHHHHHHhhhhccccccc
Q 034071 73 RDFPYQVTSC--NFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 73 Rnf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 103 (104)
||||..|.+. .+++||+|+|+|+.+.+|+|+
T Consensus 134 RNf~~~~~g~~~~sepEt~Av~~~~~~~~f~l~ 166 (363)
T cd06245 134 TDFTSNASNMSADVQPETKAIIDNLISKDFTLS 166 (363)
T ss_pred CCCCcccCCCCCCCcHHHHHHHHHHHhCCceEE
Confidence 9999877543 479999999999999999885
No 7
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.97 E-value=4.4e-32 Score=210.10 Aligned_cols=102 Identities=35% Similarity=0.503 Sum_probs=95.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-----------cccCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-----------RLGNENNTV 70 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-----------~R~n~~gvD 70 (104)
|+|+++||+||+|++|++++++|+++|+++|.+|+.++.+|++++|+|+|++||||+++. +|.|++|||
T Consensus 53 p~v~~~~~iH~~E~ig~~~~l~l~~~L~~~y~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~~~~~~~R~n~~GvD 132 (372)
T cd03868 53 PMFKYVGNMHGDETVGRQVLIYLAQYLLENYGGDERVTELVNTTDIYLMPSMNPDGFERSQEGDCSCGGYGGRENANNVD 132 (372)
T ss_pred CeEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhCCEEEEEeeeCCchHHhhcccCccccCCCccCCCCCcc
Confidence 789999999999999999999999999999989999999999999999999999999985 588999999
Q ss_pred CCCCCCCCcCC-----CCchHHHHHHHhhhhccccccc
Q 034071 71 LNRDFPYQVTS-----CNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 71 LNRnf~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
||||||++|+. ..+++||+|+++|+...+|+|+
T Consensus 133 LNRnf~~~~~~~~~~~~~sepEt~av~~~~~~~~~~l~ 170 (372)
T cd03868 133 LNRNFPDQFEGKLQRLSERQPETVAMMKWIRSNPFVLS 170 (372)
T ss_pred CCCCCCcccCCcCCCCCCCCHHHHHHHHHHhhCCcEEE
Confidence 99999999985 3589999999999999998874
No 8
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.97 E-value=1.7e-31 Score=208.47 Aligned_cols=102 Identities=34% Similarity=0.600 Sum_probs=92.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhc-CCChHHHHhhcceeEEEEecCCcchhhhc------------cccCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNH-MKDPLVRLIAENMHLHIFPSMNPDGYALK------------RLGNENN 68 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~-~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------------~R~n~~g 68 (104)
|+|++.||+||+|++|++++++++++|+++| ..|+.++++|++++|+|||++||||+++. +|.|++|
T Consensus 53 p~v~i~~giHg~E~ig~~~~~~l~~~L~~~~~~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~wr~~R~n~~G 132 (395)
T cd03867 53 PEVKYIGNMHGNEVLGRELLIYLAQFLCSEYLLGNQRIQTLINTTRIHLLPSMNPDGYEAAASEGAGYNGWTNGRQNAQN 132 (395)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhCcEEEEEeccCCchHHhhhhcCccccccccCCcCCCC
Confidence 8999999999999999999999999999988 46889999999999999999999999973 3778999
Q ss_pred CCCCCCCCCCcCC----------------C-------CchHHHHHHHhhhhccccccc
Q 034071 69 TVLNRDFPYQVTS----------------C-------NFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 69 vDLNRnf~~~~~~----------------~-------~~~~~~~~~~~~~~~~~~~~~ 103 (104)
||||||||+.|+. + .+++||+|+|+|+.+.+|+|+
T Consensus 133 vDLNRNf~~~~~~~~~~~~~~g~~~~~~p~p~~~~~~~sepEt~Av~~~~~~~~~~l~ 190 (395)
T cd03867 133 IDLNRNFPDLTSEVYRRRRQRGARTDHIPIPDSYWFGKVAPETKAVMKWMRSIPFVLS 190 (395)
T ss_pred cccccCCCcchhhhcchhhcccccccCCCCccccccCccCHHHHHHHHHHhhCCceEE
Confidence 9999999998853 1 368999999999999999875
No 9
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.97 E-value=2.2e-31 Score=199.42 Aligned_cols=101 Identities=23% Similarity=0.235 Sum_probs=91.5
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCC----ChHHHHhhcceeEEEEecCCcchhhhc------cccCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMK----DPLVRLIAENMHLHIFPSMNPDGYALK------RLGNENNTVL 71 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~----d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n~~gvDL 71 (104)
|.|+|.||+||+|++|++++++++++|+.++.. ++.++.+|++++|+|||++||||+++. ||+|++||||
T Consensus 53 ~~i~i~agiHarE~i~~~~~l~li~~L~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~wR~N~~GVDL 132 (272)
T cd06227 53 VKALLLFGEHARELISPETGLHLLSNLCGELAETFDWGDLLKNILDNFDLKIIPNENPDGRKKVESGNYCLRENENGVDL 132 (272)
T ss_pred CEEEEECCccCCchhhHHHHHHHHHHHHHhcccccchhHHHHHHHhcCcEEEEeccCCchheeEeccCcccccCCccccc
Confidence 688999999999999999999999999998754 367999999999999999999999984 9999999999
Q ss_pred CCCCCCCcCCCC--------------chHHHHHHHhhhhcccccc
Q 034071 72 NRDFPYQVTSCN--------------FGFLTSFFMKTKLNLKIVL 102 (104)
Q Consensus 72 NRnf~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 102 (104)
|||||++|+... +++||+|+++++.+.++.+
T Consensus 133 NRNf~~~w~~~~~~~~~~~y~G~~~~sEpEt~av~~~~~~~~~~~ 177 (272)
T cd06227 133 NRNYGADWGFKEDDYEDEEYSGPAPFSEPETRVLRDLLTSFSPDV 177 (272)
T ss_pred cccCCcccccCCCCccccccCCCCCCCcHHHHHHHHHHHhCCCeE
Confidence 999999997532 5899999999999887654
No 10
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.97 E-value=7.1e-31 Score=198.85 Aligned_cols=99 Identities=18% Similarity=0.090 Sum_probs=90.4
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccC--------CC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGN--------EN 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n--------~~ 67 (104)
|+|+|.||+||+|++|++++++++++|++.|..|+.++.+|++++|+|||++||||++++ |||| +.
T Consensus 54 ~~v~i~~giHarE~i~~~~~l~~i~~Ll~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~r~wRknr~~~~~~~~~ 133 (300)
T cd06246 54 NAIWIDCGIHAREWISPAFCLWFVGHATQFYGIDGQMTNLLRHMDFYIMPVMNVDGYDYTWKKNRMWRKNRSFYANSHCI 133 (300)
T ss_pred CeEEEecccCccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHhCeEEEEEeecCCceeEEEeccceeecCCCCCCCCCcc
Confidence 789999999999999999999999999999888999999999999999999999999975 7887 47
Q ss_pred CCCCCCCCCCCcCCCC----------------chHHHHHHHhhhhcccc
Q 034071 68 NTVLNRDFPYQVTSCN----------------FGFLTSFFMKTKLNLKI 100 (104)
Q Consensus 68 gvDLNRnf~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 100 (104)
|||||||||.+|+... |++||+|+++|+.+.++
T Consensus 134 GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~p~SEpEt~av~~~~~~~~~ 182 (300)
T cd06246 134 GTDLNRNFDAKWCCEGASSSSCSETYCGPYPESEPEVKAVASFLRRHIN 182 (300)
T ss_pred CcccccccccccCCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhCCc
Confidence 9999999999997421 68999999999987654
No 11
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.97 E-value=1.1e-30 Score=197.81 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=90.9
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccCC--------C
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGNE--------N 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n~--------~ 67 (104)
|+|+|+||+||+|++|++++++++++|+..|+.|+.++.+|++++|+|||++||||++++ ||||+ .
T Consensus 54 p~v~i~~giHarE~i~~~~~l~~i~~l~~~y~~d~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~~c~ 133 (300)
T cd03871 54 PAIFMDCGFHAREWISPAFCQWFVREAVRTYGREAIMTELLDKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGSSCI 133 (300)
T ss_pred CeEEEeccccccccccHHHHHHHHHHHHHHccCCHHHHHHHHcCeEEEEEeecCCcCeeeeccCHHHHHhcCCCCCCCcc
Confidence 789999999999999999999999999999988999999999999999999999999986 78763 6
Q ss_pred CCCCCCCCCCCcCCC----------------CchHHHHHHHhhhhccccc
Q 034071 68 NTVLNRDFPYQVTSC----------------NFGFLTSFFMKTKLNLKIV 101 (104)
Q Consensus 68 gvDLNRnf~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 101 (104)
|||||||||+.|+.. .|++||+|+++|+.+.+++
T Consensus 134 GVDLNRNf~~~w~~~g~s~~pc~~~Y~G~~p~SEpEt~Al~~~~~~~~~~ 183 (300)
T cd03871 134 GTDPNRNFNAGWCTVGASRNPCDETYCGSAPESEKETKALADFIRNNLSS 183 (300)
T ss_pred ccccCcCCCCccCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHhcCcc
Confidence 999999999999742 2689999999999886553
No 12
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=99.97 E-value=1.6e-30 Score=192.63 Aligned_cols=100 Identities=21% Similarity=0.186 Sum_probs=89.2
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCC-----ChHHHHhhcceeEEEEecCCcchhhhc---------------
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMK-----DPLVRLIAENMHLHIFPSMNPDGYALK--------------- 61 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~-----d~~~~~ll~~~~i~ivP~~NPDG~~~~--------------- 61 (104)
|+|+|+||+||+|++|++++++++++|+..|.. +..++++|++++|+|||++||||+++.
T Consensus 17 ~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~~~ 96 (255)
T cd06229 17 KTVFYNASFHAREWITTLLLMKFIEEYARAYENNEKLGGYDLRELLENVTICFVPMVNPDGVEIVQNGPYAIRNYYLELL 96 (255)
T ss_pred ceEEEECCccccchhhHHHHHHHHHHHHHHhccCccccchhHHHHHhcCeEEEEeCccCCchheeeecccccccchhhhH
Confidence 789999999999999999999999999998864 346799999999999999999999974
Q ss_pred -----------cccCCCCCCCCCCCCCCcCCC-----------------CchHHHHHHHhhhhccccc
Q 034071 62 -----------RLGNENNTVLNRDFPYQVTSC-----------------NFGFLTSFFMKTKLNLKIV 101 (104)
Q Consensus 62 -----------~R~n~~gvDLNRnf~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 101 (104)
||.|+.|||||||||+.|+.. .+++||+|+++++...++.
T Consensus 97 ~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~s~~p~~~~y~G~~p~SEpEtral~~~~~~~~~~ 164 (255)
T cd06229 97 VINAGSINFKEWKANARGVDLNRNFPAGWEKEKAGPKAPAPRNYKGEQPLSEPETIALAELTRENRFR 164 (255)
T ss_pred HhhcCCCcccccccCCcccccCCCCCCCCCcCCCCCCCCCccCcCCCCCCCchhHHHHHHHHHhCCCe
Confidence 267889999999999999753 2789999999999887665
No 13
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.97 E-value=2.4e-30 Score=195.50 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=89.9
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-----cccCC----------
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-----RLGNE---------- 66 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-----~R~n~---------- 66 (104)
|+|+|+|++||+|++|++++++++++|+..|..++.++.+|++++|+|||++||||+++. ||+|+
T Consensus 43 p~v~i~~~iHarE~ig~~~~l~~i~~L~~~~~~d~~v~~lL~~~~i~ivP~~NPDG~~~~~~~~~wRkNr~~~~~~~~~~ 122 (293)
T cd06226 43 PVFFIMGAIHAREYTTAELVLRFAEDLLEGYGTDADATWLLDYHEIHVVPIVNPDGRKIAEQGLSQRKNANTSGGSNCSG 122 (293)
T ss_pred CEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhcCeEEEEecccCCcceeeccCcceeccCCCCCCCCccc
Confidence 789999999999999999999999999999988999999999999999999999999975 88885
Q ss_pred --CCCCCCCCCCCCcCCC-----------------CchHHHHHHHhhhhccc
Q 034071 67 --NNTVLNRDFPYQVTSC-----------------NFGFLTSFFMKTKLNLK 99 (104)
Q Consensus 67 --~gvDLNRnf~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 99 (104)
.|||||||||++|+.. .+++||+|+++|+....
T Consensus 123 n~~GVDLNRNf~~~w~~~~~~~~~p~~~~y~G~~p~SEpEt~Av~~~~~~~~ 174 (293)
T cd06226 123 SSYGVDLNRNYSFGWGGAGASSGDPCSETYRGPAPGSEPETAALEDYIRGLF 174 (293)
T ss_pred cccccccccCCCCcCCcCCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhcc
Confidence 5999999999999642 26799999999998865
No 14
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.97 E-value=2.2e-30 Score=196.37 Aligned_cols=98 Identities=23% Similarity=0.275 Sum_probs=90.0
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccCC--------C
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGNE--------N 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n~--------~ 67 (104)
|+|+|+||+||+|++|.+++++++++|++.|..|+.++.+|++++|+|||++||||+++. ||+|+ .
T Consensus 55 ~~v~i~~giHarE~~~~~~~l~~~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wRknr~~~~~~~~~ 134 (304)
T cd06248 55 PAIVIHGTVHAREWISTMTVEYLAYQLLTGYGSDATVTALLDKFDFYIIPVVNPDGFVYTQTSDRLWRKNRQPTSGSSCV 134 (304)
T ss_pred cEEEEECCcCcCccccHHHHHHHHHHHHHhhccCHHHHHHHHhCcEEEEeeecCchhhhhccchhhhhhcCCCCCCCCce
Confidence 789999999999999999999999999999988999999999999999999999999865 78875 6
Q ss_pred CCCCCCCCCCCcCC----------------CCchHHHHHHHhhhhccc
Q 034071 68 NTVLNRDFPYQVTS----------------CNFGFLTSFFMKTKLNLK 99 (104)
Q Consensus 68 gvDLNRnf~~~~~~----------------~~~~~~~~~~~~~~~~~~ 99 (104)
|||||||||..|+. ..+++||+|+++|+...+
T Consensus 135 GVDLNRNf~~~w~~~g~s~~p~s~~Y~G~~~~sEpEt~av~~~~~~~~ 182 (304)
T cd06248 135 GTDLNRNWPYKWDGGGSSTNPCSETYRGESPGDAPEAKALAAFLNKLA 182 (304)
T ss_pred eecCCCCCCCcccCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhcc
Confidence 99999999999974 237999999999998763
No 15
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.97 E-value=3e-30 Score=195.52 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=89.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccC--------CC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGN--------EN 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n--------~~ 67 (104)
|+|+|+||+||+|++|++++++++++|+..|+.|+.++.+|++++|+|||++||||++++ |||| +.
T Consensus 54 p~v~i~~giHarE~i~~~~~l~~~~~L~~~~~~d~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~~~~ 133 (301)
T cd03870 54 PAIWIDAGIHSREWITQATGVWFAKKITEDYGQDPSFTAILDSMDIFLEIVTNPDGYVFTHSQNRLWRKTRSVTSGSLCV 133 (301)
T ss_pred ceEEEeccccccchhhHHHHHHHHHHHHHhcccCHHHHHHHHhCcEEEEeeecCchhhheecccceeecCCCCCCCCCcc
Confidence 789999999999999999999999999999988999999999999999999999999976 7875 58
Q ss_pred CCCCCCCCCCCcCCC----------------CchHHHHHHHhhhhcc
Q 034071 68 NTVLNRDFPYQVTSC----------------NFGFLTSFFMKTKLNL 98 (104)
Q Consensus 68 gvDLNRnf~~~~~~~----------------~~~~~~~~~~~~~~~~ 98 (104)
||||||||+.+|+.. .|++||+|+++|+.+.
T Consensus 134 GVDLNRNf~~~w~~~g~s~~p~~~~Y~G~~pfSEpEt~av~~~~~~~ 180 (301)
T cd03870 134 GVDPNRNWDAGFGGAGASSNPCSETYHGPYANSEVEVKSIVDFVKSH 180 (301)
T ss_pred ccccccCCCcccCcCCCCCCCCccccCCCCCCccHHHHHHHHHHhhC
Confidence 999999999999742 2699999999999865
No 16
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.96 E-value=2.5e-30 Score=196.00 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=89.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccC--------CC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGN--------EN 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n--------~~ 67 (104)
|+|+|.||+||+||+|++++++++++|+..|..|+.++.+|++++|+|||++||||++++ |||| +.
T Consensus 51 ~~i~i~~giHarEwi~~~~~~~~i~~Ll~~~~~d~~~~~lL~~~~~~ivP~vNPDGy~ys~~~~r~wrknR~~~~~~~c~ 130 (300)
T cd03872 51 KAVWIDCGIHAREWIGPAFCQWFVKEALNSYQTDPAMKKMLNQLYFYVMPVFNVDGYHYSWTNDRFWRKTRSKNSRYQCR 130 (300)
T ss_pred CeEEEecccccccccCHHHHHHHHHHHHHhccCChHHHHHHhhCeEEEEeeecCCcceeeeccchhhhccCCCCCCCCcc
Confidence 789999999999999999999999999999988999999999999999999999999985 7776 58
Q ss_pred CCCCCCCCCCCcCCC----------------CchHHHHHHHhhhhcc
Q 034071 68 NTVLNRDFPYQVTSC----------------NFGFLTSFFMKTKLNL 98 (104)
Q Consensus 68 gvDLNRnf~~~~~~~----------------~~~~~~~~~~~~~~~~ 98 (104)
||||||||+..|+.. .+++||+|+.+|+.+.
T Consensus 131 GVDLNRNf~~~w~~~g~s~~Pcs~~Y~G~~pfSEpEt~al~~~~~~~ 177 (300)
T cd03872 131 GVDANRNWKVKWCDEGASLHPCDDTYCGPFPESEPEVKAVAQFLRKH 177 (300)
T ss_pred ccccccccCcccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC
Confidence 999999999999743 2689999999999875
No 17
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.96 E-value=3.1e-30 Score=195.27 Aligned_cols=98 Identities=23% Similarity=0.250 Sum_probs=90.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccCC--------C
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGNE--------N 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n~--------~ 67 (104)
|+|+++||+||+|++|++++++++++|+++|..++.++++|++++|+|||++||||++++ ||||+ .
T Consensus 53 ~~i~i~~giHarEwi~~~~~l~~i~~Ll~~y~~d~~~~~ll~~~~i~ivP~~NPDGy~ys~~~~r~wRknr~~~~~~~c~ 132 (298)
T cd06247 53 KIIWMDCGIHAREWISPAFCQWFVKEILQNYKTDPILRKVLKNVDFYVLPVLNIDGYIYTWTTDRLWRKNRSPHNNGTCY 132 (298)
T ss_pred cEEEEeccccccccccHHHHHHHHHHHHHHhccCHHHHHHHhcCeEEEEeeecCCcceEEecccceecccCCCCCCCCcc
Confidence 689999999999999999999999999999988999999999999999999999999976 78864 6
Q ss_pred CCCCCCCCCCCcCCC----------------CchHHHHHHHhhhhccc
Q 034071 68 NTVLNRDFPYQVTSC----------------NFGFLTSFFMKTKLNLK 99 (104)
Q Consensus 68 gvDLNRnf~~~~~~~----------------~~~~~~~~~~~~~~~~~ 99 (104)
||||||||+.+|+.. .+++||+|+++++.+.+
T Consensus 133 GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~pfSEpEt~ai~~~~~~~~ 180 (298)
T cd06247 133 GVDLNRNFNSQWCSIGASRNCRSNIFCGTGPESEPETKAVARLIESKK 180 (298)
T ss_pred ccccccCCCCccccCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhcC
Confidence 999999999999742 26899999999999875
No 18
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.96 E-value=9.1e-30 Score=190.78 Aligned_cols=97 Identities=25% Similarity=0.364 Sum_probs=91.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|+|+|+||+||+|++|++++++++++|+..|..|+.++.+|++++|+|||++||||+.+.+|.|++|||||||||..|..
T Consensus 25 p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG~~~~~R~n~~GVDLNRNfp~~~~~ 104 (273)
T cd03862 25 PVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVGMALKTRSNGNGVDLMRNAPVDAED 104 (273)
T ss_pred CEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCHHHhcccCCCCCcccCCCCCCCccc
Confidence 88999999999999999999999999999998899999999999999999999999999999999999999999998751
Q ss_pred -----------------------CCchHHHHHHHhhhhcc
Q 034071 82 -----------------------CNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 82 -----------------------~~~~~~~~~~~~~~~~~ 98 (104)
..+++||+|+++++...
T Consensus 105 ~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~~~~~~ 144 (273)
T cd03862 105 KPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCRFVREL 144 (273)
T ss_pred cccccccCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 25789999999999874
No 19
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.96 E-value=6e-30 Score=197.91 Aligned_cols=101 Identities=38% Similarity=0.584 Sum_probs=93.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcC-CChHHHHhhcceeEEEEecCCcchhhhc---------cccCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHM-KDPLVRLIAENMHLHIFPSMNPDGYALK---------RLGNENNTVL 71 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~---------~R~n~~gvDL 71 (104)
|+|+|+||+||+|++|++++++|+++|+++|. +|+.++++|++++|+|+|++||||+++. +|.|+.||||
T Consensus 53 p~v~i~agiH~~E~~g~~~~~~l~~~L~~~~~~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~w~~~R~n~~GvDL 132 (374)
T cd03858 53 PEFKYVGNMHGNEVVGRELLLRLAQYLCENYGAGDPRITRLVDNTRIHIMPSMNPDGYEKAAEGDCGGLTGRYNANGVDL 132 (374)
T ss_pred ceEEEeccccCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEcccCCchhhhhcccCCcccccCCCCcceec
Confidence 88999999999999999999999999999887 7899999999999999999999999983 5788899999
Q ss_pred CCCCCCCcCCC-------CchHHHHHHHhhhhcccccc
Q 034071 72 NRDFPYQVTSC-------NFGFLTSFFMKTKLNLKIVL 102 (104)
Q Consensus 72 NRnf~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 102 (104)
|||||..|... .+++||+|+++++...+|.+
T Consensus 133 NRnf~~~~~~~~~~G~~~~sepEt~al~~~~~~~~~~~ 170 (374)
T cd03858 133 NRNFPDLFFTNYRSSDNGPRQPETKAVMNWIKSIPFVL 170 (374)
T ss_pred ccCCCcccccccccCCCcccCHHHHHHHHHHhhCCceE
Confidence 99999999865 38999999999999887765
No 20
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.96 E-value=6.4e-30 Score=192.80 Aligned_cols=101 Identities=25% Similarity=0.301 Sum_probs=90.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc--------cccC--------
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK--------RLGN-------- 65 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~--------~R~n-------- 65 (104)
|+|+|+||+||+|++|++++++++++|+++|..|+.++.+|++++|+|||++||||+++. ||+|
T Consensus 55 p~i~i~~~iH~~E~~g~~~~l~~i~~L~~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~wrkn~~~~~~~~ 134 (295)
T cd03859 55 PEVLYTSTHHAREWLSLEMAIYLMHYLLENYGKDPRIQNLVDNRELWFVPVVNPDGYEYDETTGGYRSWRKNRRDNSGDI 134 (295)
T ss_pred CEEEEECCcCccchhhHHHHHHHHHHHHHhhccCHHHHHHHhcCeEEEEeeeCCCcceEEeeccCccceeccCCCCCCCc
Confidence 789999999999999999999999999999888999999999999999999999999964 5655
Q ss_pred --CCCCCCCCCCCCCcCCC------------------CchHHHHHHHhhhhcc-cccc
Q 034071 66 --ENNTVLNRDFPYQVTSC------------------NFGFLTSFFMKTKLNL-KIVL 102 (104)
Q Consensus 66 --~~gvDLNRnf~~~~~~~------------------~~~~~~~~~~~~~~~~-~~~~ 102 (104)
+.||||||||+.+|+.. -+++||+|+++++... .|.+
T Consensus 135 ~~~~GvDLNRNf~~~w~~~~~g~s~~p~~~~y~G~~p~sepEt~av~~~~~~~~~~~~ 192 (295)
T cd03859 135 SSSDGVDLNRNYGYKWGYDSGGSSNDPSSETYRGPSAFSEPETQAIRDFVESHKNIKT 192 (295)
T ss_pred CcceeecCCCCCCcccCCCCCCCCCCCCCCCccCCCCCchHHHHHHHHHHHhCCCeEE
Confidence 46999999999999763 1589999999999987 5544
No 21
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=99.96 E-value=7e-30 Score=200.16 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=90.5
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccCC---------
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGNE--------- 66 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n~--------- 66 (104)
|+|+|.||+|++||+++.++++++.+|+..|++|+.++++|++.+|+|+|++|||||+++ ||||+
T Consensus 170 ~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~~~~~~ll~~~dwyI~Pv~NPDGYeYS~t~~R~WRKnRs~~~~~~~C 249 (418)
T KOG2650|consen 170 KAIFIDAGIHAREWISPATALWFINQLVSSYGRDPAVTKLLDKLDWYILPVVNPDGYEYSRTTDRLWRKNRSPNGCASRC 249 (418)
T ss_pred ceEEEecchhHHhhccHHHHHHHHHHHHhhhccCHHHHHHHhcCcEEEEeeecCCcceeeecccccccccCCCCCCCCee
Confidence 789999999999999999999999999999999999999999999999999999999998 88873
Q ss_pred CCCCCCCCCCCCcCCC-C----------------chHHHHHHHhhhhcc
Q 034071 67 NNTVLNRDFPYQVTSC-N----------------FGFLTSFFMKTKLNL 98 (104)
Q Consensus 67 ~gvDLNRnf~~~~~~~-~----------------~~~~~~~~~~~~~~~ 98 (104)
.||||||||+.+|.+. + |++||+|+.+|+.+.
T Consensus 250 ~GvDlNRNfd~~W~~~~Gas~~PCse~Y~G~~pfSEpEt~av~~fi~~~ 298 (418)
T KOG2650|consen 250 IGVDLNRNFDFHWGGGKGASSDPCSETYAGPSPFSEPETRAVRDFITSF 298 (418)
T ss_pred eCCCCCCCccCcCCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhc
Confidence 7999999999999983 1 699999999998863
No 22
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.96 E-value=3.7e-29 Score=185.82 Aligned_cols=100 Identities=29% Similarity=0.398 Sum_probs=86.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhcc---------ccCCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKR---------LGNENNTVLN 72 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~---------R~n~~gvDLN 72 (104)
|.|+|+||+||+|++|+++++.++++|++.| +++.++.+|++++|+|||++||||+++.+ |.|.+|||||
T Consensus 47 ~~v~i~~~~Hg~E~~g~~~~l~~~~~L~~~~-~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~w~~~R~n~~GvDlN 125 (279)
T PF00246_consen 47 PTVLIIAGIHGNEWIGSEALLYLIEELLSGY-DDPEVKELLDNVVIYIIPMVNPDGYEYGTSGDRGWRKNRSNANGVDLN 125 (279)
T ss_dssp EEEEEEE-SSTT-THHHHHHHHHHHHHHHHT-TSHHHHHHHHHEEEEEES-SSHHHHHHHHHT-TTCCSTSSBTTS--GG
T ss_pred cceEEEecccccccCchHHHHHHHHHhhccc-cchhhhhhcccceEEEEeeecccceeeeeecccccccccccccccccc
Confidence 7899999999999999999999999999987 78999999999999999999999999986 8999999999
Q ss_pred CCCCCCcCCC----------------CchHHHHHHHhhhhcccccc
Q 034071 73 RDFPYQVTSC----------------NFGFLTSFFMKTKLNLKIVL 102 (104)
Q Consensus 73 Rnf~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 102 (104)
|||+..|+.. .+++||+|+++++...++.+
T Consensus 126 Rnf~~~w~~~~~~~~~~~~~y~g~~~~sepEt~al~~~~~~~~~~~ 171 (279)
T PF00246_consen 126 RNFPYQWNEEGSSSNPCSETYRGPAPFSEPETRALRNLIQDWNPDF 171 (279)
T ss_dssp GSSSSSTTSSSSBSSTTSTTB--SSTTTSHHHHHHHHHHHHTTEEE
T ss_pred cccCcccccccccCCCCCcccCCCcchhhhHHHHHHHHHhhcceeE
Confidence 9999999543 26899999999998876654
No 23
>smart00631 Zn_pept Zn_pept.
Probab=99.96 E-value=1.1e-28 Score=184.30 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=91.0
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------ccc------CCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLG------NENNT 69 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~------n~~gv 69 (104)
|+|+|+||+||+|++|++++++++++|+.+|+.++.++.+|++++|+|||++||||+++. ||+ |++||
T Consensus 50 ~~v~i~a~~Hg~E~~g~~~~~~~i~~L~~~~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wr~~r~~~~~~~Gv 129 (277)
T smart00631 50 PAIFIDAGIHAREWIGPATALYLINQLLENYGRDPRITKLLDKTDIYIVPVLNPDGYEYTHTGDRLWRKNRSPNSNCRGV 129 (277)
T ss_pred cEEEEECCccccccccHHHHHHHHHHHHHhcccCHHHHHHHHcCcEEEEEeecCchhhheecccccccCCCCCCCCCcCc
Confidence 789999999999999999999999999999888999999999999999999999999965 566 57899
Q ss_pred CCCCCCCCCcCCC-------------CchHHHHHHHhhhhcc-cccc
Q 034071 70 VLNRDFPYQVTSC-------------NFGFLTSFFMKTKLNL-KIVL 102 (104)
Q Consensus 70 DLNRnf~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~ 102 (104)
||||||+..|+.. .+++||+|+++++... ++.+
T Consensus 130 DLNRnf~~~w~~~~~p~~~~y~G~~~~sepEt~ai~~~~~~~~~~~~ 176 (277)
T smart00631 130 DLNRNFPFHWGKTGNPCSETYAGPSPFSEPETKAVRDFIRSNRRFVL 176 (277)
T ss_pred ccCCCCCCCCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCeeE
Confidence 9999999998651 3699999999999987 5543
No 24
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=99.95 E-value=6.8e-29 Score=195.57 Aligned_cols=103 Identities=41% Similarity=0.626 Sum_probs=96.6
Q ss_pred CcEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc---------cccCCCCCCC
Q 034071 1 MMTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK---------RLGNENNTVL 71 (104)
Q Consensus 1 ~P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~---------~R~n~~gvDL 71 (104)
.|.+-++|++||+|..|.+.++.|+++||.+|.+|+++++|++.++|+|+|.+|||||+.. .|.|++|+||
T Consensus 120 ePEfKyv~nmHGnE~vGRElll~L~e~Lc~~y~~n~~i~~Lv~~trIHlmPSmNPDGyE~a~~~~~~~~~GR~Nang~DL 199 (500)
T KOG2649|consen 120 EPEFKYIGNMHGNEVVGRELLLRLAEYLCDNYGKDPRITQLVNNTRIHIMPSMNPDGYEIAKRGDRGWATGRNNANGVDL 199 (500)
T ss_pred CCcceeeeeccccccccHHHHHHHHHHHHHhcCCChHHHHHHhhceEEEecccCcchhhhhhcccccceecccCccccch
Confidence 3788999999999999999999999999999999999999999999999999999999987 5899999999
Q ss_pred CCCCCCCcCCC---------------------CchHHHHHHHhhhhccccccc
Q 034071 72 NRDFPYQVTSC---------------------NFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 72 NRnf~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 103 (104)
|||||+.+..- ..++||.|+|+|++++|||||
T Consensus 200 NrnFPd~~~~~~~~~~~~~~n~~l~~~~~~~~~~~pEt~Avm~W~~~~pFvLS 252 (500)
T KOG2649|consen 200 NRNFPDQFRLVYFIVTFDLLNSHLIMFNDDLNLRQPETIAVMKWLRDIPFVLS 252 (500)
T ss_pred hccCcccccceeeeeeecccccccccccccccccCccHHHHHHHHhhcceeee
Confidence 99999975532 569999999999999999998
No 25
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.95 E-value=1.8e-28 Score=187.81 Aligned_cols=97 Identities=26% Similarity=0.251 Sum_probs=86.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcC------------CChHHHHhhcceeEEEEecCCcchhhhc------cc
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHM------------KDPLVRLIAENMHLHIFPSMNPDGYALK------RL 63 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~------------~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R 63 (104)
|+|+|+||+||+||+|++++++++++|+..|. +++.++++|+ ++|+|||++||||++++ ||
T Consensus 29 p~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~~~~~~~yg~~~~~d~~v~~lL~-~~i~IvP~vNPDGy~~s~~~~r~WR 107 (332)
T cd06228 29 YGALFIGGVHARERGSPDNLIYFVSDLLNARKAGRGIKYGGRTYTAADVKAILD-AGIVVFPLVNPDGRAHDQTANSCWR 107 (332)
T ss_pred CEEEEEccccccchhhHHHHHHHHHHHHHhhhccccccccccccccHHHHHHHh-CeEEEEEeecCcchhheeccchhhh
Confidence 78999999999999999999999999999874 3688999999 99999999999999986 88
Q ss_pred cCC-----------CCCCCCCCCCCCcCCC--------------------------CchHHHHHHHhhhhccc
Q 034071 64 GNE-----------NNTVLNRDFPYQVTSC--------------------------NFGFLTSFFMKTKLNLK 99 (104)
Q Consensus 64 ~n~-----------~gvDLNRnf~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 99 (104)
||+ .||||||||+.+|+.. -|++||+|+.+++...+
T Consensus 108 KNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~~~~~~~~~g~S~~Pcse~Y~G~~pfSEPET~av~~~~~~~~ 180 (332)
T cd06228 108 KNRNPASAGPNPSSVGVDINRNFDFLWDFQKYFDPGASRSVASTDPASETFHGTAAFSEPETRNVVWVMDTFK 180 (332)
T ss_pred ccCCCCcccccCcccccccCCCCCCCcCcccccccccccCCCCCCCCccccCCCCCCccHHHHHHHHHHhccC
Confidence 874 4999999999999721 16999999999987754
No 26
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.95 E-value=7.1e-28 Score=186.36 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=87.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-------cccCC--------
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-------RLGNE-------- 66 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-------~R~n~-------- 66 (104)
|+|+|.||+||+|++|++++++++++|++.|.+++.++++|++++|+|||++||||+++. ||+|+
T Consensus 56 p~I~i~~giHarEwig~~~~l~li~~Ll~~y~~d~~i~~lLd~~~~~IvP~vNPDG~e~~~~~~~r~wRk~r~~~~~~~~ 135 (360)
T cd06905 56 PAFWIDANIHATEVTGSAVALYVIQTLLNGYGSDPEVTRLLDGYTFYILPRLNPDGAEQALTHPPYVRRSSRRPYPYPDR 135 (360)
T ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHHHhccCCHHHHHHHhcCeEEEEeeeCCChheEEeeccccccccCCCCcccccc
Confidence 789999999999999999999999999999888999999999999999999999999965 55553
Q ss_pred ------------------------------------------------------------------------CCCCCCCC
Q 034071 67 ------------------------------------------------------------------------NNTVLNRD 74 (104)
Q Consensus 67 ------------------------------------------------------------------------~gvDLNRn 74 (104)
.|||||||
T Consensus 136 ~~g~~~~D~n~D~~~~~mr~~d~~g~w~~~~~~p~~m~~~~~~~~~g~~y~~~~eg~~~~~dg~~~~~~~~~~GvDlNRN 215 (360)
T cd06905 136 IDGLYPEDIDGDGLILQMRVKDPCGAWKVSERDPRIMVRREPDEFGGTYYRLLPEGLIRNYDGYNIKIAPPLEGLDFNRN 215 (360)
T ss_pred cccccccccCccchhheeeccccccccccccccchhhccccccccCceeeeecccccccccccccccccccccCCCcccC
Confidence 39999999
Q ss_pred CCCCcCCCC----------chHHHHHHHhhhhcc
Q 034071 75 FPYQVTSCN----------FGFLTSFFMKTKLNL 98 (104)
Q Consensus 75 f~~~~~~~~----------~~~~~~~~~~~~~~~ 98 (104)
|+.+|+.+. |++||+|+.+|+.+.
T Consensus 216 f~~~W~~~~~~~y~G~~p~SEpEt~av~~~~~~~ 249 (360)
T cd06905 216 FPHDWRPEGEQYGAGPFPFSEPETRAVVEFWTDH 249 (360)
T ss_pred cCCCCCCCCCcCCCCCCCCChHHHHHHHHHHhcC
Confidence 999996532 799999999999765
No 27
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.95 E-value=5.7e-28 Score=181.97 Aligned_cols=95 Identities=24% Similarity=0.246 Sum_probs=85.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccC--------CC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGN--------EN 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n--------~~ 67 (104)
|+|+|+||+||+|++|++++++++++|+.++. +.++.+|++++|+|||++||||+++. ||+| +.
T Consensus 50 ~~v~i~~~~Hg~E~~g~~~~~~~~~~L~~~~~--~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~wrknr~~~~~~~~~ 127 (294)
T cd03860 50 PAIFIDAGIHAREWISPATALYIINQLVESYD--PEVTDLLDNYDWYILPVANPDGYEYTHTTDRLWRKNRSPNSGGGCV 127 (294)
T ss_pred cEEEEECCcCcCccccHHHHHHHHHHHHHccC--HHHHHHHHcCeEEEEeeecCCchhhhccccchhcccCCCCCCCCce
Confidence 78999999999999999999999999998643 67899999999999999999999975 6765 46
Q ss_pred CCCCCCCCCCCcCCC----------------CchHHHHHHHhhhhcc
Q 034071 68 NTVLNRDFPYQVTSC----------------NFGFLTSFFMKTKLNL 98 (104)
Q Consensus 68 gvDLNRnf~~~~~~~----------------~~~~~~~~~~~~~~~~ 98 (104)
|||||||||..|+.. .+++||+|+++++...
T Consensus 128 GvDLNRnf~~~w~~~~~~~~p~~~~y~G~~~~sepEt~al~~~~~~~ 174 (294)
T cd03860 128 GVDLNRNFDYHWGGGGASSDPCSETYAGPSAFSEPETRAVRDFLLSL 174 (294)
T ss_pred eeccCCCCCCCCccCCCCCCCCCCCccCCCCCchHHHHHHHHHHHhc
Confidence 999999999999741 3689999999999887
No 28
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.94 E-value=2.8e-27 Score=167.62 Aligned_cols=95 Identities=27% Similarity=0.330 Sum_probs=86.6
Q ss_pred EEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhh-ccccCCCCCCCCCCCCCCcC-C
Q 034071 4 LQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYAL-KRLGNENNTVLNRDFPYQVT-S 81 (104)
Q Consensus 4 v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~-~~R~n~~gvDLNRnf~~~~~-~ 81 (104)
|+|+||+||+|++|++++++++++|+..+... +.++++.+|+|+|++||||+++ .||+|++|+|||||||..|. .
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~~~~---~~l~~~~~i~iiP~~NPdG~~~~~~R~n~~g~DlNR~f~~~~~~~ 77 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNYGRD---TKLLENGRLLVVPVLNPDGYEAVNWRKNANGVDLNRNFPGLWGKG 77 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcCcch---HHHHhCCeEEEEeCcccccceeeeEEeCCCCcCccCCCCCcccCC
Confidence 68999999999999999999999999864332 7889999999999999999999 89999999999999999998 6
Q ss_pred CCchHHHHHHHhhhhccccc
Q 034071 82 CNFGFLTSFFMKTKLNLKIV 101 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (104)
..+++|++++++++...++.
T Consensus 78 ~~~~~e~~~~~~~~~~~~~~ 97 (196)
T cd00596 78 PLSEPETRALAELIQQRKVD 97 (196)
T ss_pred CCCcHHHHHHHHHHHhCCce
Confidence 77999999999999986543
No 29
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.94 E-value=4.6e-27 Score=173.76 Aligned_cols=89 Identities=22% Similarity=0.239 Sum_probs=81.2
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|.||+||+|++|++++++++++|++ +++..+.+|++++|+|||++||||+++. ||+|++||||||||+.
T Consensus 52 ~~v~i~~~iH~~E~~g~~~~~~~~~~l~~---~~~~~~~ll~~~~i~ivP~~NPDG~~~~~wR~N~~GvDLNRnw~~--- 125 (244)
T cd06237 52 EWIVVISRQHPPEVTGALAMKAFIETLLS---DSELAKKFRAKYNVLLVPNMNPDGVDLGHWRHNANGIDLNRDWSN--- 125 (244)
T ss_pred ceEEEEcCcCCCcHHHHHHHHHHHHHHHh---CCHHHHHHHHhCEEEEEEeeCcchhhcCCccCCCCCcCCCCCCCC---
Confidence 78999999999999999999999999987 3455789999999999999999999987 9999999999999974
Q ss_pred CCCchHHHHHHHhhhhcc
Q 034071 81 SCNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (104)
.+++||+|+++++...
T Consensus 126 --~sepEt~a~~~~~~~~ 141 (244)
T cd06237 126 --FNQPETRAIRDYLVRL 141 (244)
T ss_pred --CCCHHHHHHHHHHHHH
Confidence 5789999999998743
No 30
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.93 E-value=3.9e-26 Score=170.63 Aligned_cols=96 Identities=20% Similarity=0.113 Sum_probs=87.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCC--------------ChHHHHhhcceeEEEEecCCcchhhhccccCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMK--------------DPLVRLIAENMHLHIFPSMNPDGYALKRLGNEN 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~--------------d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~ 67 (104)
+.|++++++||+|+.|+++++.++++|+.++.. ++.++++|+++.|+|+|++||||+++.+|.|++
T Consensus 53 k~v~~~~~iHg~E~~g~~a~l~ll~~L~~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~~~R~Na~ 132 (268)
T cd06244 53 KPPIINNNIHPDETPGIDAQTELIEELAQEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVAGTRENAN 132 (268)
T ss_pred CeEEEEeCcCCCCHHHHHHHHHHHHHHHhcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCcceeeeecCCC
Confidence 467788999999999999999999999987532 788999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCchHHHHHHHhhhhcccccc
Q 034071 68 NTVLNRDFPYQVTSCNFGFLTSFFMKTKLNLKIVL 102 (104)
Q Consensus 68 gvDLNRnf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (104)
|+||||||.. .+++||+++++++...++++
T Consensus 133 G~DLNRD~~~-----~sqpEt~av~~~~~~w~P~~ 162 (268)
T cd06244 133 GFDLNRDNSF-----QTQPETQAIVALIAEWNPAS 162 (268)
T ss_pred ccccCCCCCc-----ccCHHHHHHHHHHHHhCCeE
Confidence 9999999975 48999999999988877665
No 31
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.93 E-value=6e-26 Score=167.18 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=81.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|.|++++|+||+|++|+++++.++++|+. ..++.++.+|+++.|+|+|++||||+++.+|.|+.|+||||||+.
T Consensus 30 p~v~i~~giHG~E~~G~~a~l~ll~~L~~--~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~R~n~~g~DlNRd~~~---- 103 (236)
T cd06243 30 PTVLLVGTQHGDEPAGREALLIIARDLAF--GEDEELVPLLHQTTVLFVPTANPDGREADTRSNADGIDINRDHLL---- 103 (236)
T ss_pred CEEEEECCcCCCChHHHHHHHHHHHHHHh--cCCHHHHHHHhcceEEEEeCcCccHhhcCCcCCCCCcccCCCCCC----
Confidence 89999999999999999999999999976 467889999999999999999999999999999999999999986
Q ss_pred CCchHHHHHHHhhhhcc
Q 034071 82 CNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (104)
.+++|++++.+++...
T Consensus 104 -~~~pEt~al~~~~~~~ 119 (236)
T cd06243 104 -LNTPEAQALASVLRDY 119 (236)
T ss_pred -CCCHHHHHHHHHHHhc
Confidence 3567777777776554
No 32
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.93 E-value=7.7e-26 Score=166.19 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=82.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|+|++.|++||+|+.|+++++.++++|++. .+..++.+|++++|+|||++||||+++.+|.|++|+||||||+.
T Consensus 34 ~~vli~agiHG~E~~g~~all~ll~~L~~~--~~~~~~~ll~~~~v~iiP~lNPDG~~~~~R~N~~GvDLNRdf~~---- 107 (231)
T cd06239 34 IKILLWSQMHGNESTTTKALLDLLNFLGTS--KDQEAKKILDEVTLVIIPMLNPDGAEAYTRVNANGVDLNRDAQD---- 107 (231)
T ss_pred cEEEEEeccCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHhCCEEEEEeccCccHHHHcccCCCcCCcCCCCCCC----
Confidence 789999999999999999999999999884 44556899999999999999999999999999999999999986
Q ss_pred CCchHHHHHHHhhhhccc
Q 034071 82 CNFGFLTSFFMKTKLNLK 99 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (104)
.+++|++++++++...+
T Consensus 108 -~s~PEtr~l~~~~~~~~ 124 (231)
T cd06239 108 -LSQPESRLLRDVYDGFQ 124 (231)
T ss_pred -CChHHHHHHHHHHHhcC
Confidence 47899999999887654
No 33
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.93 E-value=4.4e-26 Score=161.24 Aligned_cols=88 Identities=26% Similarity=0.298 Sum_probs=78.1
Q ss_pred EEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCCC-
Q 034071 4 LQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTSC- 82 (104)
Q Consensus 4 v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~~- 82 (104)
|+|+||+||+|+.|.+++.+++++|+.. .|++.+|+|||++||||+++.+|+|++|+|||||||..|.+.
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~~~---------~l~~~~i~ivP~~NPdG~~~~~R~n~~gvDLNRnFp~~~~~~~ 71 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILPGL---------ILRGLSWYVIPVLNPDGLLRATRCNANGVDLNRNFPTKDWPPG 71 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHHHH---------hhcCCeEEEEeCcCccHHhhCcccCCCCcChhhcCCccccccC
Confidence 5899999999999999999999999874 278899999999999999999999999999999999988422
Q ss_pred ------------CchHHHHHHHhhhhcccc
Q 034071 83 ------------NFGFLTSFFMKTKLNLKI 100 (104)
Q Consensus 83 ------------~~~~~~~~~~~~~~~~~~ 100 (104)
.+++||+++++++...++
T Consensus 72 ~~~~~~~~G~~~~sepEt~al~~~~~~~~~ 101 (178)
T cd06904 72 ASRYRRYPGPKPGSEPESRALMDLIERFKP 101 (178)
T ss_pred CCcccccCCCCCCCCHHHHHHHHHHHhcCC
Confidence 367899999999877543
No 34
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.93 E-value=9.4e-26 Score=168.39 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=85.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|+|++||+|..|..++..|++.|++. .|+.++.+|++++|+|||++||||+.++ +|.|+.|+||||||+. -
T Consensus 56 ~~V~i~a~iH~~E~~g~~~~~~ll~~L~~~--~d~~~~~ll~~~~~~IvP~~NPDG~~~g~~R~n~~GvDLNRnw~~--p 131 (263)
T cd06234 56 KKLWIIARQHPGETMAEWFMEGLLERLLDP--DDAVARALLEKAVFYVVPNMNPDGSARGHLRTNAAGANLNREWAE--P 131 (263)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHHHHhhc--CCHHHHHHHhcCEEEEEeeecchhhhhcCCccCCCCCCCCCCCCC--C
Confidence 789999999999999999999999999984 5788999999999999999999999997 8999999999999974 1
Q ss_pred CCCchHHHHHHHhhhhcccc
Q 034071 81 SCNFGFLTSFFMKTKLNLKI 100 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (104)
+..+++|++++++++....+
T Consensus 132 ~~~s~PEt~av~~~~~~~~~ 151 (263)
T cd06234 132 SAERSPEVFAVRQRMEETGV 151 (263)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 24589999999999977654
No 35
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.93 E-value=1.1e-25 Score=168.27 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=82.2
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|+|++||+|++|+++++.++++|++. ++..+.+|++++|+|||++||||++++ ||+|+.|+||||||+. -
T Consensus 54 ~~i~i~a~iH~~E~~~~~~~~~li~~Ll~~---~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~G~DLNR~~~~--p 128 (269)
T cd03856 54 KYIFLIARVHPGETNASWVMKGFLEFLLSD---NPTAQSLRESFVFKIVPMLNPDGVIRGNYRCSLSGVDLNRQWQN--P 128 (269)
T ss_pred cEEEEEcCcCCCchHHHHHHHHHHHHHHhC---CHHHHHHHhcCeEEEEeeeCCccccccCCcCCCCCCCcCCCCCC--C
Confidence 789999999999999999999999999973 556899999999999999999999997 8999999999999974 1
Q ss_pred CCCchHHHHHHHhhhhcc
Q 034071 81 SCNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (104)
...+++|++++.+++...
T Consensus 129 ~~~~~pE~~~~~~~~~~~ 146 (269)
T cd03856 129 SPDLHPEIYLVKGLMLYL 146 (269)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 235788999988888764
No 36
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.92 E-value=4.2e-25 Score=165.46 Aligned_cols=94 Identities=20% Similarity=0.119 Sum_probs=83.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc--------------------
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-------------------- 61 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-------------------- 61 (104)
|.|+|.+|+||+|++|.+++++++++|++. .++.++++|++++|+|+|++||||+++.
T Consensus 49 ~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~--~~~~~~~ll~~~~i~i~P~~NPDG~~r~~~w~~~~~~~~~~~d~~~r~ 126 (271)
T cd06238 49 VVVWLGYSVHGNEISGTEAALLTAYHLAAA--QGDEIEALLDNAVVLIDPMQNPDGRDRFVNWYNSNRGMVPSADPQDRE 126 (271)
T ss_pred cEEEEECCcCCCChHHHHHHHHHHHHHHHc--CCHHHHHHHhcCEEEEEeccCCCHHHHHHHhhhhccCCccccchhhhh
Confidence 689999999999999999999999999984 5788899999999999999999999952
Q ss_pred -------cccCCCCCCCCCCCCCCcCCCCchHHHHHHHhhhhcccccc
Q 034071 62 -------RLGNENNTVLNRDFPYQVTSCNFGFLTSFFMKTKLNLKIVL 102 (104)
Q Consensus 62 -------~R~n~~gvDLNRnf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (104)
.|.|+.|+||||||.. .+++||+++.+++...++++
T Consensus 127 ~~~~wp~~R~n~~g~DLNRD~~~-----~s~pEtra~~~~~~~~~p~~ 169 (271)
T cd06238 127 HNEPWPGGRTNHYWFDLNRDWLP-----LTQPESRGRLAAYHEWRPNV 169 (271)
T ss_pred cccCCccccccccCccccccccc-----ccCHHHHHHHHHHHhcCCeE
Confidence 2677899999999974 67999999999988875543
No 37
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.92 E-value=1e-24 Score=159.17 Aligned_cols=89 Identities=25% Similarity=0.271 Sum_probs=78.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|+|+|.||+||+|+.|+++++.++++|+.. +...+.+|++.+|+|||++||||+++.||.|+.|+||||||+..
T Consensus 32 ~~v~i~~giHg~E~~g~~a~~~l~~~l~~~---~~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~g~DLNRd~~~~--- 105 (226)
T cd03857 32 PRVWIDAQIHGNESAGSDALLELLRQLASA---SDEEAKMLENIVIVLIPRANPDGAALFTRENANGLDLNRDFLKL--- 105 (226)
T ss_pred cEEEEECCcCCCCchHHHHHHHHHHHHHhC---CHHHHHHHhCCEEEEEeccCCChHHhccccCCCcccCCCCCCCc---
Confidence 689999999999999999999999999873 44458899999999999999999999999999999999999873
Q ss_pred CCchHHHHHHHhhhhcc
Q 034071 82 CNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (104)
+++|++++.+++...
T Consensus 106 --~~pEt~~~~~~~~~~ 120 (226)
T cd03857 106 --TQPETRAVREVFIEW 120 (226)
T ss_pred --CCHHHHHHHHHHHHc
Confidence 567777776555543
No 38
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.92 E-value=1e-24 Score=162.67 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=83.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|+|++|++|+.|+.++.+++++|++. ++..+.|+++++|+|||++||||+.++ +|.|+.|+||||||.. .
T Consensus 44 ~~I~i~ariHp~E~~~s~~~~~li~~L~~~---~~~~~~L~~~~~~~IvP~~NPDGv~~gn~R~~~~G~DLNR~w~~--p 118 (261)
T cd06908 44 KVIFITARVHPGESPSSYVCQGLIDFLVSN---HPIAKVLREHLVFKIVPMLNPDGVFLGNYRCSLMGHDLNRHWHD--P 118 (261)
T ss_pred cEEEEECCcCCCChHHHHHHHHHHHHHhhC---CHHHHHHHHhCcEEEEeeecCcceeecCCcCcCcCcCCCCCCCC--C
Confidence 679999999999999999999999999983 788999999999999999999999999 7999999999999974 2
Q ss_pred CCCchHHHHHHHhhhhcc
Q 034071 81 SCNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (104)
...++||+.++++++...
T Consensus 119 ~~~~~PEv~av~~~i~~~ 136 (261)
T cd06908 119 SPWAHPTLHAVKNLLKEL 136 (261)
T ss_pred CcccChHHHHHHHHHHHh
Confidence 234789999999998764
No 39
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.91 E-value=9.9e-25 Score=163.15 Aligned_cols=88 Identities=25% Similarity=0.292 Sum_probs=78.0
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|+|+|+||+||+|+.|++++++++++|+.. +...++|++++|+|+|++||||+++.+|.|+.|+||||||..
T Consensus 55 p~V~i~~giHg~E~~g~~a~l~ll~~L~~~----~~~~~lL~~~~i~ivP~~NPDG~~~~~R~na~g~DlNRD~~~---- 126 (268)
T cd06242 55 LRVWLQGGVHGNEPAGDEAALALLGKLDNN----PKWASVLEKIDIIVLPRYNPDGSAYFQRTLATGYDPNRDHTK---- 126 (268)
T ss_pred CEEEEECCcCCCCHHHHHHHHHHHHHHHhC----chHHHHHhcCeEEEEeccCcchhhhccccCCcCcccCCCCCc----
Confidence 789999999999999999999999999874 344589999999999999999999999999999999999965
Q ss_pred CCchHHHHHHHhhhhcc
Q 034071 82 CNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (104)
.+++|++++.+++...
T Consensus 127 -~~~pEtra~~~~~~~~ 142 (268)
T cd06242 127 -LARQQTRDIKEAFSKF 142 (268)
T ss_pred -ccCHHHHHHHHHHHHh
Confidence 4577788777776654
No 40
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.91 E-value=1.5e-24 Score=161.41 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=81.5
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|+|++||+|+.|+++++.++++|+.. ++.++.+++++.|+|||++||||+.++ +|.|+.|+||||||.. .
T Consensus 46 ~~V~i~a~iH~~E~~~s~~~~~ll~~Ll~~---~~~~~~Ll~~~~~~iiPm~NPDG~~~g~~R~n~~GvDLNR~w~~--p 120 (258)
T cd06235 46 KVIVITARQHPGETNSSFVMQGFIDFLLSD---SPEAQYLRENFIFKIIPMLNPDGVIHGNYRCSLSGIDLNRQWKN--P 120 (258)
T ss_pred cEEEEECCcCCCChHHHHHHHHHHHHHhcC---CHHHHHHHhccEEEEEccccccceeecCCcCCCCCCCcCCCCCC--C
Confidence 789999999999999999999999999873 567899999999999999999999985 9999999999999975 1
Q ss_pred CCCchHHHHHHHhhhhcc
Q 034071 81 SCNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (104)
...+++|++++.+++...
T Consensus 121 ~~~~~PE~~~~~~~i~~~ 138 (258)
T cd06235 121 DKKLHPEIYHVKQLIKKL 138 (258)
T ss_pred CcccCcHHHHHHHHHHHH
Confidence 235788888888877664
No 41
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.91 E-value=1.8e-24 Score=161.57 Aligned_cols=90 Identities=22% Similarity=0.211 Sum_probs=79.9
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc---------------cccCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK---------------RLGNE 66 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~---------------~R~n~ 66 (104)
|+|+|+||+||+|+.|.+++++|+++|+.. +. ..+|++++|+|||++||||+++. ||.|+
T Consensus 49 p~v~i~agiH~~E~~G~~a~~~ll~~L~~~---~~--~~ll~~~~i~ivP~~NpDG~~~~~~~~r~~q~gp~~~~~R~na 123 (266)
T cd06241 49 PVVLVQAGIHAGEIDGKDAGLMLLRDLADG---KK--DALLDKVVLVFIPVFNVDGHERRSPYNRTNQNGPEEYGWRGNA 123 (266)
T ss_pred CEEEEeCCcCCCCchHHHHHHHHHHHHHhc---ch--HHHHhCCEEEEEeCCCccHHHhcccccccccCCCCccCceecc
Confidence 789999999999999999999999999984 21 27999999999999999999974 99999
Q ss_pred CCCCCCCCCCCCcCCCCchHHHHHHHhhhhccccc
Q 034071 67 NNTVLNRDFPYQVTSCNFGFLTSFFMKTKLNLKIV 101 (104)
Q Consensus 67 ~gvDLNRnf~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (104)
+|+||||||+. .+++|++|+++++...++.
T Consensus 124 ~g~DLNRdf~~-----~~~pEtra~~~~~~~~~p~ 153 (266)
T cd06241 124 RNLNLNRDFIK-----LDAPEMRAFAKLFNKWNPD 153 (266)
T ss_pred cceecCCCCcc-----cCCHHHHHHHHHHHHhCCC
Confidence 99999999985 4689999999998776544
No 42
>PRK10602 murein peptide amidase A; Provisional
Probab=99.91 E-value=1.6e-24 Score=159.77 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=74.3
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCC-CcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPY-QVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~-~~~ 80 (104)
+.++|+||+||+|++|++++.+++++|... ...++|||++||||+++.+|.|++|+|||||||. .|.
T Consensus 40 ~~vli~agiHG~E~~g~~~~~~l~~~l~~~------------~~~~~iipvvNPDG~~~~~R~n~~GvDLNRnFp~~~w~ 107 (237)
T PRK10602 40 ESGLILAGTHGDETASVVTLSCALRTLTPS------------LRRHHVVLAVNPDGCQLGLRANANGVDLNRNFPAANWK 107 (237)
T ss_pred ceEEEEecCCCCcHHHHHHHHHHHHhhhhh------------ccceEEEEEECccccccccccCCCCCchhhcCCCcccc
Confidence 568999999999999999999999988752 2346899999999999999999999999999997 664
Q ss_pred CC-----------------------CchHHHHHHHhhhhccc
Q 034071 81 SC-----------------------NFGFLTSFFMKTKLNLK 99 (104)
Q Consensus 81 ~~-----------------------~~~~~~~~~~~~~~~~~ 99 (104)
.. .+++||+++.+++.+++
T Consensus 108 ~~~~~~~w~~~~~~~~~~~y~G~~p~SepEt~al~~~i~~~~ 149 (237)
T PRK10602 108 EGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRLQ 149 (237)
T ss_pred cccccccccCCCCccchhhccCCCCCCCHHHHHHHHHHHHcC
Confidence 32 15899999999998875
No 43
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.91 E-value=4.7e-24 Score=157.09 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=77.2
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|+|+|+||+||+|++|.++++++++++.. .++++++|+|+|++||||++..+|.|+.|+||||+|+.
T Consensus 43 p~vlI~gGiHG~E~~G~~a~l~~l~~l~~---------~~l~~~~i~ivP~vNPdG~~~~~R~n~~g~DLNR~F~~---- 109 (236)
T cd06231 43 PRVLITAGIHGDEPAGPLGALEFLRAAAL---------ELAQDVNLSVYPCINPSGFEAITRWNRNGIDPNRSFRS---- 109 (236)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHHHHHH---------HHhcCCeEEEEECcChhHHhcCccCCCCCccccCCCCC----
Confidence 89999999999999999999999998765 26789999999999999999999999999999999987
Q ss_pred CCchHHHHHHHhhhhcc
Q 034071 82 CNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (104)
..+++|++++|+++...
T Consensus 110 ~~~~~E~~al~~~~~~~ 126 (236)
T cd06231 110 ESPSPEVRLLMEWLRRL 126 (236)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 35679999999999776
No 44
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.89 E-value=3e-23 Score=157.49 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=83.0
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|+|++|++|+.|+.++++++++|+.. .++..+.++++++|+|||++||||++++ +|.|+.|+||||+|..-
T Consensus 68 ~~V~I~ariHp~E~~~s~~~~~ll~~Ll~~--~d~~a~~L~~~~~~~IvPmlNPDGv~~g~~R~~~~G~DLNR~y~~p-- 143 (304)
T cd06236 68 PVVFISSRVHPGETPSSFVFNGFLKFLLNK--DDPRAALLRRRFVFKLIPMLNPDGVYRGHYRTDTRGVNLNRVYLNP-- 143 (304)
T ss_pred cEEEEECCcCCCCchHHHHHHHHHHHHHhC--CCHHHHHHHhCCeEEEEEeEcccccccCccccCCcCCCcCcCCCCC--
Confidence 789999999999999999999999999984 4788999999999999999999999987 79999999999998652
Q ss_pred CCCchHHHHHHHhhhhcc
Q 034071 81 SCNFGFLTSFFMKTKLNL 98 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (104)
...++||+.|+.+++..+
T Consensus 144 ~~~~~Pei~aik~~i~~~ 161 (304)
T cd06236 144 DPELHPSIYAIKKLILYL 161 (304)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 245789999998888653
No 45
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.88 E-value=9.9e-23 Score=152.85 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=86.3
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhcc-------------------
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKR------------------- 62 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~------------------- 62 (104)
|.|+|.+++||+|++|++++++++++|+++ +++.++++|+++.|+|+|++||||+++..
T Consensus 58 p~v~i~~~iHg~E~~g~ea~l~l~~~L~~~--~d~~~~~lLd~~~i~i~P~~NPDG~er~~~w~~~~~~~~~~~~~~~~~ 135 (273)
T cd06240 58 PIVWIDGGLHSTETGGPQMLMELAYRLATE--EDPEIKRILDNVIVLIVPVANPDGRDRVVDWYMRTLGPPKRDRSPLPP 135 (273)
T ss_pred CEEEEECCcCCCchHHHHHHHHHHHHHHhc--CCHHHHHHHhcCEEEEEeCcCCCHHHHhhhhhhhccCCcccCCCCccc
Confidence 789999999999999999999999999884 68999999999999999999999999851
Q ss_pred -ccCCCCCCCCCCCCCCcCCCCchHHHHHHHhhhhccccccc
Q 034071 63 -LGNENNTVLNRDFPYQVTSCNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 63 -R~n~~gvDLNRnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
|.+..|+||||||-. ....+++...+.+.+|+..+.+++|
T Consensus 136 ~~~~y~g~DlNRD~~~-~~~~et~~~~~~~~~w~P~v~~D~H 176 (273)
T cd06240 136 LYGKYVGHDNNRDGYM-NQQETTNNSRKLFLEWHPQIMYDLH 176 (273)
T ss_pred ccCccCCcCCCcccch-hcCHHHHHHHHHHHhcCCcEEEEcc
Confidence 234468999999965 5556677777888899999988887
No 46
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=99.87 E-value=4e-22 Score=148.70 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=76.5
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|+|+|+|++|++|+.|+.++..+++.|+. .++..+.++++++|+|||++||||+.++ +|.|..|+||||+|...|.
T Consensus 47 ~~I~I~ariHp~E~~~s~~~~gll~~L~~---~~~~a~~Lr~~~~f~IvPmlNPDGv~~G~~R~~~~G~DLNR~w~~p~~ 123 (261)
T cd06907 47 KAVVLTARVHPGETNASWMMKGFLDFLTS---NSPDAQLLRDTFIFKIVPMLNPDGVIVGNYRCSLAGRDLNRNYKTPLK 123 (261)
T ss_pred CEEEEECCcCCChHHHHHHHHHHHHHHhc---CCHHHHHHHhcCCEEEEEeecCccccccCCcCCCcCCCCCcCCCCCCc
Confidence 78999999999999999999999999886 4788899999999999999999999998 8999999999999987653
Q ss_pred CCCchHHHHHHHhh
Q 034071 81 SCNFGFLTSFFMKT 94 (104)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (104)
...|++.++.+.
T Consensus 124 --~~~P~i~~~k~l 135 (261)
T cd06907 124 --DSFPTIWYTKNM 135 (261)
T ss_pred --ccCchHHHHHHH
Confidence 344555555444
No 47
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=99.83 E-value=2.2e-20 Score=140.32 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=77.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|+|++|++|..|+.++..+++.|+. .|+..+.|+++++|+|||++||||+.++ +|.|..|+||||+|.. -.
T Consensus 53 p~I~I~ARvHPgEt~~Swi~~g~l~~L~~---~d~~a~~Lr~~~~f~IvPmlNPDGvv~Gn~Rc~~~G~DLNR~w~~-p~ 128 (278)
T cd06906 53 PYIFLSARVHPGETNASWVMKGTLEFLMS---SSPTAQSLRESYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQS-PN 128 (278)
T ss_pred cEEEEEcccCCCcchHHHHHHHHHHHHhC---CCHHHHHHHHhCcEEEEeeecCccceecccccCCCCCCCCCCCCC-CC
Confidence 78999999999999999999999998876 5889999999999999999999999997 8999999999999974 11
Q ss_pred CC--CchHHHHHHHhhhhc
Q 034071 81 SC--NFGFLTSFFMKTKLN 97 (104)
Q Consensus 81 ~~--~~~~~~~~~~~~~~~ 97 (104)
.+ +.-..++++.+++.+
T Consensus 129 ~~~~P~i~~~k~l~~~l~~ 147 (278)
T cd06906 129 PELHPTIYHTKGLLQYLAA 147 (278)
T ss_pred cccChHHHHHHHHHHHHHH
Confidence 11 223346666677654
No 48
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.79 E-value=1.8e-19 Score=132.35 Aligned_cols=88 Identities=26% Similarity=0.334 Sum_probs=67.9
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc---cccCC-----------C
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK---RLGNE-----------N 67 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~---~R~n~-----------~ 67 (104)
|+|+|+||+||+||+|..++++++++|++ +++++|+|+|++|||||++. ||.|+ .
T Consensus 39 p~I~I~gGvHarEwig~~~al~fi~~L~~-----------~~~~n~~I~P~vNPDGYe~~~~L~r~nP~~~hHaaR~~A~ 107 (240)
T cd06232 39 HPVVISAGQHANETSGVVGALRAAEALAA-----------RPGAHFALIPLENPDGYALHERLRAEHPRHMHHAARYTAL 107 (240)
T ss_pred cEEEEeCCcCCCcchhHHHHHHHHHHHhc-----------cCCceEEEEEeeCCcHHHhhchhhccCcccccchhhhccc
Confidence 89999999999999999999999999986 57899999999999999998 35554 4
Q ss_pred CCCCC-CCCCCCcCCCCchHHHHHHHhhhhccccccc
Q 034071 68 NTVLN-RDFPYQVTSCNFGFLTSFFMKTKLNLKIVLH 103 (104)
Q Consensus 68 gvDLN-Rnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (104)
|.|+| |++... .+++...+++.++....+++||
T Consensus 108 g~D~~fr~~~~~---~Es~~~~~~~~~~~~~~hiDlH 141 (240)
T cd06232 108 GDDLEYREFPPF---GEREARHQALAKSGAQLHVNLH 141 (240)
T ss_pred CCCcccccCCcc---hHHHHHHHHHHhhCCcEEEECC
Confidence 55555 554331 3445555555566556666665
No 49
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.73 E-value=7.4e-18 Score=127.07 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=67.3
Q ss_pred cEEEEEccccCCC-hhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADE-PVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E-~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~ 80 (104)
|.|+|++|+||.| .+|+.+++.+++++... .+..++.+++||++||+|+...+|.|.+||||||||-+...
T Consensus 52 ~~l~i~sGvHG~Eg~~Gs~~~~~ll~~~~~~--------~~~~~~~vi~vh~vNP~Gf~~~~R~nedgvDLNRnf~d~~~ 123 (283)
T cd06233 52 RLLVITSGTHGVEGFCGSAIQLALLRELLPR--------SLPAGVAVLLVHALNPYGFAHLRRVNENNVDLNRNFLDFSA 123 (283)
T ss_pred cEEEEEecccCCcccchHHHHHHHHHhcchh--------hccCCceEEEEeCcCHHHHhhcccCCCCCCChhhcccccCC
Confidence 5789999999999 79999999999986542 34567899999999999999999999999999999988777
Q ss_pred CCCchHH
Q 034071 81 SCNFGFL 87 (104)
Q Consensus 81 ~~~~~~~ 87 (104)
..+.++.
T Consensus 124 ~~p~N~~ 130 (283)
T cd06233 124 PLPENPG 130 (283)
T ss_pred CCCCCcc
Confidence 7665443
No 50
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.71 E-value=1.8e-17 Score=124.72 Aligned_cols=92 Identities=23% Similarity=0.244 Sum_probs=75.0
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|+|+|+||+||+|+.|..++..+++++... ..+.+++++|++||.|+....|.+.+|.||||.||....+
T Consensus 21 p~v~i~~giHGdE~~G~~~~~~l~~~l~~~----------~~~g~v~~vp~~Np~a~~~~~R~~~d~~dlNR~fpg~~~g 90 (287)
T cd06251 21 PTLLLTAAIHGDELNGVEIIRRLLRQLDPK----------TLRGTVIAVPVVNVFGFLNQSRYLPDRRDLNRSFPGSKNG 90 (287)
T ss_pred CEEEEEcCccCCchhHHHHHHHHHhcCCcc----------cCceEEEEEeCCCHHHHHhccccCCCccCHhhcCCCCCCC
Confidence 899999999999999999999998875331 1245788999999999999999999999999999998777
Q ss_pred CCchHHHHHHHhhhh---ccccccc
Q 034071 82 CNFGFLTSFFMKTKL---NLKIVLH 103 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~---~~~~~~~ 103 (104)
..++..+.++++... ++-++||
T Consensus 91 ~~~~~~a~~i~~~~~~~~d~~iDlH 115 (287)
T cd06251 91 SLASRIAHLFFTEILSHADYGIDLH 115 (287)
T ss_pred CHHHHHHHHHHHHHHhhCCEEEEcC
Confidence 777777878876543 3444444
No 51
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.69 E-value=7.4e-17 Score=121.76 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=75.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCC-CCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNE-NNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~-~gvDLNRnf~~~~~ 80 (104)
|+++|+||+||+|+.|.+++..++++|... .+ +.+++++|++||.|+....|.++ ++.||||.||..-.
T Consensus 25 p~v~i~agvHG~E~~G~~~~~~l~~~l~~~---------~~-~g~~~~vp~~N~~a~~~~~R~~p~d~~dlNR~fpg~~~ 94 (293)
T cd06255 25 PTLWLHAQVHGNEYNGTQAIVDLYRSLDPA---------AL-KGRLVALPTANPTALDARTRMSPFDELDLNRTFPGNPN 94 (293)
T ss_pred CEEEEEcccCCCcHHHHHHHHHHHHhCCHh---------hc-CCeEEEEeCcCHHHHHhhcccCCCCCCCcccCCCCCCC
Confidence 899999999999999999999999986431 12 45678999999999999999998 99999999998666
Q ss_pred CCCchHHHHHHHhhhh---ccccccc
Q 034071 81 SCNFGFLTSFFMKTKL---NLKIVLH 103 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~~~~~~~ 103 (104)
+..++..+.++.+-+. ++-++||
T Consensus 95 g~~~~r~A~~~~~~~~~~~d~~iDlH 120 (293)
T cd06255 95 GMVTQQMAHALFEEVRGVADYLVDLH 120 (293)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECC
Confidence 6777888888876432 4555665
No 52
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.68 E-value=1e-16 Score=118.38 Aligned_cols=89 Identities=21% Similarity=0.224 Sum_probs=73.9
Q ss_pred EEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcC-CC
Q 034071 4 LQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVT-SC 82 (104)
Q Consensus 4 v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~-~~ 82 (104)
|+|+||+||+|+.|.+++..+++++.... ..+.++.++|++||+|+....|.+. .||||+||..-. +.
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~~~~---------~l~g~v~~vp~~N~~g~~~~~R~~~--~DLNR~fpg~~~~~~ 69 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELDEGQ---------ALRGPVKLVPAANPLALEAGQRYLD--RDLNRIFPGDPDSGT 69 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHhhhc---------ccccEEEEEeCcCHHHHHhCCCCCC--cCCCCCCCCCCCCCC
Confidence 57999999999999999999999877521 2366789999999999999999987 999999998766 66
Q ss_pred CchHHHHHHHhhhhc---cccccc
Q 034071 83 NFGFLTSFFMKTKLN---LKIVLH 103 (104)
Q Consensus 83 ~~~~~~~~~~~~~~~---~~~~~~ 103 (104)
.++..+.++.+.... ..++||
T Consensus 70 ~~~~~a~~l~~~i~~~~d~~iDlH 93 (252)
T cd06230 70 YEDRLAAELCPELEGLADAVLDLH 93 (252)
T ss_pred HHHHHHHHHHHHHhhhccEEEECC
Confidence 678888888877654 455555
No 53
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.67 E-value=1.2e-16 Score=121.68 Aligned_cols=92 Identities=22% Similarity=0.249 Sum_probs=76.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCC-CCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNE-NNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~-~gvDLNRnf~~~~~ 80 (104)
|+|+|+||+||+|+.|..++.++++++... .-+.+++++|++||.|+....|.++ +|.||||.||....
T Consensus 35 p~v~I~aGiHGdE~~G~~~~~~L~~~l~~~----------~l~G~vi~vP~~Np~a~~~~~R~~p~D~~DLNR~Fpg~~~ 104 (316)
T cd06252 35 PTVLLTGGNHGDEYEGQIALLRLARRLDPE----------EVRGRVIILPALNFPAVQAGTRTSPIDGGNLNRVFPGDPD 104 (316)
T ss_pred CEEEEEccCCCCchHHHHHHHHHHHhCChh----------hCeEEEEEEeCCCHHHHHhccccCCCCCCcHHhhCCCCCC
Confidence 899999999999999999999999987441 1366789999999999999999987 78999999999877
Q ss_pred CCCchHHHHHHHhh-h--hccccccc
Q 034071 81 SCNFGFLTSFFMKT-K--LNLKIVLH 103 (104)
Q Consensus 81 ~~~~~~~~~~~~~~-~--~~~~~~~~ 103 (104)
+..++..++++.+. . .++-++||
T Consensus 105 gs~~~riA~~i~~~l~~~aD~~iDLH 130 (316)
T cd06252 105 GTVTEMIAHYLTTELLPRADYVIDLH 130 (316)
T ss_pred CCHHHHHHHHHHHhhhhcCcEEEEcc
Confidence 77778888888764 2 34455555
No 54
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=99.65 E-value=4.9e-16 Score=120.38 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=59.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc------cccCC-CCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK------RLGNE-NNTVLNRD 74 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~------~R~n~-~gvDLNRn 74 (104)
|+|+|+||+||+|+.|.+++.+|+++|.....++. + +.+|++||++||+|+... .|.++ +|.||||.
T Consensus 28 p~v~i~agiHGdE~~G~~~~~~L~~~l~~~~~~~~-----l-~G~v~ivP~~Np~g~~~~~~~~~~~R~~p~dg~dlNR~ 101 (359)
T cd06250 28 PKVYIQASLHADELPGMLVLHHLIELLKKLEAEGR-----I-LGEITLVPVANPIGLNQRLGGFHLGRFDLASGTNFNRD 101 (359)
T ss_pred CEEEEEeccccCchHHHHHHHHHHHHHhhhccccc-----c-CceEEEEeCcChHHHHhhccccccccccCCCCCccCcC
Confidence 89999999999999999999999999887421111 2 557999999999999874 35554 99999999
Q ss_pred CCCCc
Q 034071 75 FPYQV 79 (104)
Q Consensus 75 f~~~~ 79 (104)
||..-
T Consensus 102 FPg~~ 106 (359)
T cd06250 102 FPDLA 106 (359)
T ss_pred CCCcc
Confidence 99854
No 55
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.64 E-value=4.1e-16 Score=117.26 Aligned_cols=92 Identities=26% Similarity=0.222 Sum_probs=74.1
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhcccc-C-CCCCCCCCCCCCCc
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLG-N-ENNTVLNRDFPYQV 79 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~-n-~~gvDLNRnf~~~~ 79 (104)
|+|+|+||+||+|+.|..++..|++++-.. .-+.+++++|++||.|+....|. + .+|.||||.||...
T Consensus 18 p~v~i~agvHG~E~~G~~~~~~l~~~l~~~----------~~~g~v~~vp~~N~~a~~~~~r~~~~~d~~dlNR~fpg~~ 87 (288)
T cd06254 18 PTLAITAGVHGGEYPGIQALQKLAREIDPA----------KLSGTLIIVHVLNLSGFYARTPYIVPEDGKNLNRVFPGDK 87 (288)
T ss_pred CEEEEEecccCCchhHHHHHHHHHHhCCcc----------cCeEEEEEEeCcCHHHHHhcCcccCCCCCCchhhcCCCCC
Confidence 899999999999999999999999876321 12667899999999999988774 3 48999999999988
Q ss_pred CCCCchHHHHHHHhhh---hccccccc
Q 034071 80 TSCNFGFLTSFFMKTK---LNLKIVLH 103 (104)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~~~~~~ 103 (104)
.+..++..+.++.+.. .+.-++||
T Consensus 88 ~g~~~~r~a~~~~~~~~~~~d~~iDlH 114 (288)
T cd06254 88 DGTLTERIAYFLTEEVIDKADFLIDLH 114 (288)
T ss_pred CCCHHHHHHHHHHHHHHhhCcEEEECC
Confidence 8877888888887643 34445554
No 56
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.64 E-value=6.5e-16 Score=117.00 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=78.0
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCC-CCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNE-NNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~-~gvDLNRnf~~~~~ 80 (104)
|+|+|+||+||+|+.|..++.+++++|....... ...-+.++.++|++||.|+....|.++ +|.||||.||..-.
T Consensus 20 p~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~~~----~~~l~g~v~~vP~~N~~a~~~~~R~~p~d~~dlNR~Fpg~~~ 95 (298)
T cd06253 20 KRICIVGGIHGDELQGLYICSLLIRFLKELEKRG----PLKLNGIVDVIPSVNPLGLNLGTRFWPTDNSDINRMFPGDPQ 95 (298)
T ss_pred cEEEEEccCccchHHHHHHHHHHHHHHhhhhccc----ccccCceEEEEeCcCHHHHHHhhCcCCCCCCcccccCCCCCC
Confidence 8999999999999999999999999987631111 112377899999999999999999886 89999999998777
Q ss_pred CCCchHHHHHHHhhhhccccc
Q 034071 81 SCNFGFLTSFFMKTKLNLKIV 101 (104)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (104)
+..++..+..+.+......++
T Consensus 96 g~~~~riA~~~~~~~~~~d~~ 116 (298)
T cd06253 96 GETTQRIAAAVFEDVKGADYC 116 (298)
T ss_pred CcHHHHHHHHHHHHhcCCCEE
Confidence 677888888888765555443
No 57
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=99.61 E-value=5.3e-16 Score=115.69 Aligned_cols=84 Identities=23% Similarity=0.186 Sum_probs=71.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCC-CCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNE-NNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~-~gvDLNRnf~~~~~ 80 (104)
|+++|+||+||+|+.|..++.+|++++... + -..+++++|+.||.|+....|..+ +|.||||.||....
T Consensus 3 p~l~i~agvHGnE~~G~~a~~~L~~~l~~~---~-------~~G~~~~vp~~N~~a~~~~~R~~~~d~~dLNR~Fpg~~~ 72 (292)
T PF04952_consen 3 PTLLITAGVHGNEYNGIEALQRLLRELDPA---D-------LSGTVIIVPVANPPAFRQGTRFVPIDGRDLNRCFPGDAL 72 (292)
T ss_dssp -EEEEEE-SSTTBCHHHHHHHHHHHHHHGG---G-------CTCEEEEEEESSHHHHHHTSSSSTTTSSBGGGSTTHHHH
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhcchhc---c-------cCCceEEEEEeCHHHHHhccccCCCCCCCHHHhCCCCcc
Confidence 899999999999999999999999998663 1 366789999999999999999998 99999999998877
Q ss_pred C---------CCchHHHHHHHhhh
Q 034071 81 S---------CNFGFLTSFFMKTK 95 (104)
Q Consensus 81 ~---------~~~~~~~~~~~~~~ 95 (104)
+ ..++..+.++.+-.
T Consensus 73 ~~~~~~~~~~~~~~~ia~~l~~~~ 96 (292)
T PF04952_consen 73 GSSLQEDYEATETERIAHALFEEI 96 (292)
T ss_dssp CHCTTHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccchhHHHHHHHHHhhhh
Confidence 7 66677777777665
No 58
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=99.59 E-value=3.7e-15 Score=114.23 Aligned_cols=92 Identities=22% Similarity=0.262 Sum_probs=75.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCC-CCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNE-NNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~-~gvDLNRnf~~~~~ 80 (104)
|+++|+||+||+|+.|..++.+|+++|... .-+.++++||++||-|+....|.++ +|.||||.||..-.
T Consensus 48 p~v~i~agvHGdE~~G~~~~~~L~~~l~~~----------~l~G~v~~vP~~N~~g~~~~~r~~p~d~~nlNR~fPG~~~ 117 (325)
T TIGR02994 48 PTALLTGGNHGDEYEGPIALFELARTLDAE----------DVSGRIIIVPAMNYPAFRAGTRTSPIDRGNLNRSFPGRPD 117 (325)
T ss_pred CEEEEEeccCCCchHHHHHHHHHHhhCChh----------hCcEEEEEEcCCCHHHHHhhCCCCCCCCCccCCCCCCCCC
Confidence 899999999999999999999999987431 1366799999999999999999887 99999999999877
Q ss_pred CCCchHHHHHHHh-hh--hccccccc
Q 034071 81 SCNFGFLTSFFMK-TK--LNLKIVLH 103 (104)
Q Consensus 81 ~~~~~~~~~~~~~-~~--~~~~~~~~ 103 (104)
+..++..+.++.+ +. .++-++||
T Consensus 118 gs~~~riA~~l~~~l~~~aD~~iDlH 143 (325)
T TIGR02994 118 GTVTEKIADYFQRHLLPLADIVLDFH 143 (325)
T ss_pred CCHHHHHHHHHHHhHHhhCCEEEECC
Confidence 7778888888854 32 33455554
No 59
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=99.40 E-value=4.2e-13 Score=104.67 Aligned_cols=73 Identities=27% Similarity=0.389 Sum_probs=65.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCC-hHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKD-PLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPY 77 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d-~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~ 77 (104)
+++++++++|++ |...+..+...|+.+|..+ ..++.++++..+++||.+||||.+.+ .|+|+.|+||||+|+.
T Consensus 148 ~~i~~~~~~H~~---g~~~~~~~~~~li~r~~~~~~~~~~lld~~~~~vvp~~NpDG~~~~~lr~na~~~dLnr~~~~ 222 (374)
T COG2866 148 KTILITAGQHAR---GEKMVEWFLYNLILRYLDPDVQVRKLLDRADLHVVPNVNPDGSDLGNLRTNANGVDLNRNFIA 222 (374)
T ss_pred ceeeEecccccC---ccHHHHHHHHHHHHHhcCccchhhhhhccccEEEecccCCchhhhcccccccCccchhhhccC
Confidence 678999999997 7778888888888887655 78899999999999999999999999 7999999999999965
No 60
>PRK02259 aspartoacylase; Provisional
Probab=99.40 E-value=6.7e-13 Score=100.10 Aligned_cols=83 Identities=14% Similarity=0.032 Sum_probs=63.5
Q ss_pred CcEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcC
Q 034071 1 MMTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 1 ~P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~ 80 (104)
+++|+|+||+||+|++|.+++.++++++... . + .....++|+.||.|+....|... .||||.||....
T Consensus 2 ~~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~~--------~-~-~g~~i~~~i~Np~A~~~~~Ry~~--~DLNR~Fpg~~~ 69 (288)
T PRK02259 2 INRVAIVGGTHGNEITGIYLVKKWQQQPNLI--------N-R-KGLEVQTVIGNPEAIEAGRRYID--RDLNRSFRLDLL 69 (288)
T ss_pred CcEEEEEcCccCChhHHHHHHHHHHhccccc--------c-c-CccEEEEEeeCHHHHHhCCCCCc--ccCCCCCCCccc
Confidence 5899999999999999999999998875431 0 2 33456889999999999999864 899999998655
Q ss_pred CC-----CchHHHHHHHhhh
Q 034071 81 SC-----NFGFLTSFFMKTK 95 (104)
Q Consensus 81 ~~-----~~~~~~~~~~~~~ 95 (104)
+. .....++.+.+..
T Consensus 70 ~~~~~~~~e~~~A~~l~~~~ 89 (288)
T PRK02259 70 QNPDLSGYEQLRAKELVQQL 89 (288)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 31 2245666666654
No 61
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=99.39 E-value=1.3e-12 Score=100.38 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=58.2
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|.|+|+||+||||++|.+++.++++++... . +--... .++|+.||.++....|.. ..||||-||..+.+
T Consensus 48 p~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~---~-----~~~~~~-v~~i~~Np~A~~~~~R~v--d~DLNR~FpG~~~~ 116 (329)
T PRK05324 48 KALVLSAGIHGNETAPIELLDQLVRDLLAG---E-----LPLRAR-LLVILGNPPAMRAGKRYL--DEDLNRLFGGRHQQ 116 (329)
T ss_pred CeEEEECCcccCcHHHHHHHHHHHHhhhcc---c-----cccCce-EEEEecCHHHHHhCcccC--CCCcccCCCCCcCC
Confidence 889999999999999999999999987752 1 111233 445689999999999987 36999999998876
Q ss_pred CCc
Q 034071 82 CNF 84 (104)
Q Consensus 82 ~~~ 84 (104)
.+.
T Consensus 117 ~~~ 119 (329)
T PRK05324 117 FPG 119 (329)
T ss_pred CCC
Confidence 654
No 62
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.38 E-value=9.6e-13 Score=101.09 Aligned_cols=84 Identities=14% Similarity=0.021 Sum_probs=67.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
|.|+|+||+||+|++|.+++.++++++... . +... .++++.||-++....|....|.||||.||....
T Consensus 35 p~v~I~aGvHGNE~~Gi~al~~ll~~~~~~--------~-~~~~--~~l~i~Np~A~~~~~R~~~d~~DLNR~Fpg~~~- 102 (327)
T cd06256 35 PPLFVSTLLHGNEPTGLQAVQRLLKALEAR--------P-LPRS--LLLFIGNVAAALAGVRRLDGQPDYNRCWPGPYD- 102 (327)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHhCChh--------h-cCCc--EEEEEeCHHHHHhCcccCCCCCCccCCCCCCCC-
Confidence 789999999999999999999999876431 1 2333 335569999999999999889999999998766
Q ss_pred CCchHHHHHHHhhhhc
Q 034071 82 CNFGFLTSFFMKTKLN 97 (104)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (104)
..++..|+.+.+...+
T Consensus 103 s~e~r~A~~l~~~l~~ 118 (327)
T cd06256 103 DPEGRLAEEVLELLAD 118 (327)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 5667777777776644
No 63
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.37 E-value=1.3e-12 Score=97.67 Aligned_cols=67 Identities=22% Similarity=0.125 Sum_probs=53.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCC-----CCCCCCCCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNEN-----NTVLNRDFP 76 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~-----gvDLNRnf~ 76 (104)
|+|+|+||+||+|++|.+++.+++++ . . +. + +.++.++ +.||-++....|.++. +.||||.||
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~--~-----~--~~-l-~G~li~~-~~N~~A~~~~~~~~p~~~R~~~~dLNR~Fp 68 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLRE--G-----L--RP-R-RGRLTLA-FANVAAYARFDPNNPTASRFVDEDMNRVWS 68 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhC--c-----c--cc-c-CCCEEEE-EECHHHHHhcccCCCcccccCCCCcCCCCC
Confidence 89999999999999999999999873 1 1 11 3 3455565 7999999988787774 789999999
Q ss_pred CCcC
Q 034071 77 YQVT 80 (104)
Q Consensus 77 ~~~~ 80 (104)
..+.
T Consensus 69 g~~~ 72 (272)
T cd06910 69 PDVL 72 (272)
T ss_pred Cccc
Confidence 8763
No 64
>COG3608 Predicted deacylase [General function prediction only]
Probab=99.36 E-value=1.8e-12 Score=99.50 Aligned_cols=80 Identities=21% Similarity=0.182 Sum_probs=70.4
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCC-CCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNE-NNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~-~gvDLNRnf~~~~~ 80 (104)
|+++|+||.||+|..|..++.+|+++|-.. + =..+++|||.+||-+++...|.++ ++.|+||+||..-.
T Consensus 49 p~~~l~ag~HGdEl~G~~al~~Li~~L~~a-----~-----i~GtV~iVP~aN~~a~~~~~R~~p~d~~N~NR~fPg~~d 118 (331)
T COG3608 49 PSVLLQAGVHGDELPGVIALRRLIPALDPA-----D-----ISGTVIIVPIANPPAFEAQGRFSPGDDTNLNRAFPGRPD 118 (331)
T ss_pred CEEEEEecccccccchHHHHHHHHHhcCHh-----h-----cCceEEEEeccCHHHHHhhcccCCCCCCcccccCCCCCC
Confidence 899999999999999999999999998653 1 267789999999999999999987 89999999997766
Q ss_pred CCCchHHHHHH
Q 034071 81 SCNFGFLTSFF 91 (104)
Q Consensus 81 ~~~~~~~~~~~ 91 (104)
++.++..++++
T Consensus 119 gs~t~ria~~l 129 (331)
T COG3608 119 GSATERIADRL 129 (331)
T ss_pred CCHHHHHHHHH
Confidence 77777777777
No 65
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=99.36 E-value=1.3e-12 Score=100.83 Aligned_cols=76 Identities=26% Similarity=0.272 Sum_probs=63.5
Q ss_pred EEEEEccccCCCh-hHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 3 TLQFIGNVHADEP-VGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 3 ~v~i~~giHG~E~-~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
.+++++|.||-|- +|+.+.+.+++.... +.+.+++.+.+|..+||.|++..+|.|.++|||||||-+....
T Consensus 53 lLv~~SGtHGVEGf~GSaiQ~~~L~~~~~--------~~~~~~~avllVHAlNPyGfa~~RR~nE~NVDLNRNfldf~~~ 124 (341)
T PF10994_consen 53 LLVLTSGTHGVEGFAGSAIQIALLREDLA--------RSLPAGVAVLLVHALNPYGFAWLRRVNENNVDLNRNFLDFSQP 124 (341)
T ss_pred EEEEEecCCcccccccHHHHHHHHHcccc--------cccCCCCeEEEEEccCccccceeeccCCcCcCcccccCcccCC
Confidence 4678899999998 999999999997522 2345789999999999999999999999999999999865555
Q ss_pred CCchH
Q 034071 82 CNFGF 86 (104)
Q Consensus 82 ~~~~~ 86 (104)
.+.++
T Consensus 125 ~p~N~ 129 (341)
T PF10994_consen 125 LPANP 129 (341)
T ss_pred CCCCc
Confidence 54443
No 66
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.35 E-value=2e-12 Score=97.51 Aligned_cols=83 Identities=17% Similarity=-0.050 Sum_probs=62.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTS 81 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~ 81 (104)
++|+|+||+||+|++|.+++..+++++... .......++|+.||.++....|.+ ..||||.||....+
T Consensus 1 ~~v~I~aGvHGnE~~Gv~~v~~l~~~~~~~----------~~~~~~v~~~i~Np~A~~~~~Ry~--d~DLNR~Fpg~~~~ 68 (282)
T cd06909 1 KRVAIVGGTHGNELTGVYLVKKWLQQPELI----------QRPSLEVHPVIANPRAVEACRRYI--DTDLNRCFTLENLS 68 (282)
T ss_pred CeEEEEcCccCChHHHHHHHHHHHhccccc----------ccCCeEEEEEecCHHHHHhCCccC--CCCCCCCCCCCccC
Confidence 479999999999999999999998875431 112334556778999999999987 58999999987655
Q ss_pred C-----CchHHHHHHHhhhh
Q 034071 82 C-----NFGFLTSFFMKTKL 96 (104)
Q Consensus 82 ~-----~~~~~~~~~~~~~~ 96 (104)
. .....++.+.+.+.
T Consensus 69 ~~~~~~~e~~~A~~l~~~l~ 88 (282)
T cd06909 69 NSELLPYEVKRAKELNQKLG 88 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 2 24566777766653
No 67
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=99.28 E-value=1.5e-11 Score=94.23 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=55.5
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~ 80 (104)
|+|+|+||+||+|++|.+++.++++++... . +--... .++|+.||.++....|... .||||-||....
T Consensus 43 p~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~---~-----l~~~~~-v~~~~~Np~A~~~~~R~~d--~DLNR~FpG~~~ 110 (322)
T cd03855 43 KAIVISAGVHGNETAPIEILNQLIKDLLAG---E-----LPLAHR-LLFIFGNPPAMRAGERFVD--ENLNRLFSGRHQ 110 (322)
T ss_pred CeEEEEccccCCchhHHHHHHHHHHhhhhc---c-----ccCCeE-EEEEeeCHHHHHhCcccCC--CCccCCCCCCcc
Confidence 889999999999999999999999988752 1 111233 4667899999999999763 599999998776
No 68
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=99.28 E-value=1.1e-11 Score=94.70 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=55.0
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcC
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVT 80 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~ 80 (104)
|+|+|+||+||+|++|.+++.++++++... .+.-..++.++ +.||.|+....|... .||||-||....
T Consensus 42 p~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~--------~~~~~~~l~~i-~~Np~A~~~~~R~~~--~DLNR~FpG~~~ 109 (319)
T TIGR03242 42 KSLVISAGIHGNETAPIEILEQLLGDIAAG--------KLPLRVRLLVI-LGNPPAMRTGKRYLH--DDLNRMFGGRYQ 109 (319)
T ss_pred CEEEEEcCcccchHHHHHHHHHHHhhhhhc--------cccCCceEEEE-EcCHHHHHhCcccCC--CCccCCCCCccc
Confidence 899999999999999999999999987652 11124445444 689999999999874 699999998763
No 69
>KOG3641 consensus Zinc carboxypeptidase [Amino acid transport and metabolism]
Probab=99.12 E-value=1.4e-10 Score=93.78 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=75.8
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc-cccCCCCCCCCCCCCC--C
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK-RLGNENNTVLNRDFPY--Q 78 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~gvDLNRnf~~--~ 78 (104)
|.|+++|.+|.+|..++.++..+++.|+.+ ++...-|.+...|.|+|++||||...+ .|+.-.|.||||-|-+ .
T Consensus 430 ~~IfLSaRVHpgeTnsSwvmkGilefl~s~---~p~aq~LRe~~vFKI~PMLNPDGV~~GnyRCSL~G~DLNR~w~tps~ 506 (650)
T KOG3641|consen 430 PVIFLSARVHPGETNSSWVMKGILEFLVSN---SPLAQGLRESYVFKIVPMLNPDGVIVGNYRCSLMGLDLNRMWSTPSP 506 (650)
T ss_pred ceEEEecccCCCCCcHHHHHHHHHHHhhcC---CcHHHhhhhheeEecccccCCCceecccceeccccchhhhhcCCCCc
Confidence 789999999999999999999999999884 666667888999999999999999988 8999999999999976 2
Q ss_pred cCCCCchHHHHHHHhhhhc
Q 034071 79 VTSCNFGFLTSFFMKTKLN 97 (104)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~ 97 (104)
| ..++...++.+.+.+..
T Consensus 507 ~-shPsi~~~k~li~~l~~ 524 (650)
T KOG3641|consen 507 A-SHPSIYAVKQLIQQLSN 524 (650)
T ss_pred c-cchhHHhHHHHHhhhhc
Confidence 3 33444555555555443
No 70
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00013 Score=55.67 Aligned_cols=83 Identities=22% Similarity=0.125 Sum_probs=59.1
Q ss_pred EEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCCCcCCC
Q 034071 3 TLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPYQVTSC 82 (104)
Q Consensus 3 ~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~~~~~~ 82 (104)
.+.|+|||||||..+.+++-.+++.+...+. | + ..+. .+-.-||-..++..|+- --||||=|.+.|.+-
T Consensus 45 ~lvIsaGiHGNEtapvEll~kl~~~~~ag~~--p-----~-a~r~-L~ilgNP~Ai~~gkRYi--eqDlNR~F~gr~q~~ 113 (324)
T COG2988 45 SLVISAGIHGNETAPVELLDKLQQKISAGQL--P-----L-AWRC-LVILGNPPAIAAGKRYI--EQDLNRMFGGRPQSF 113 (324)
T ss_pred ceEEEecccCCccCcHHHHHHHHhhhhhccc--C-----c-ceeE-EEEecCcHHHHhchHHH--hhhHHHHhCCCcccC
Confidence 3889999999999999999999998877532 1 1 2222 23456999999998883 569999998877654
Q ss_pred C------chHHHHHHHhhhh
Q 034071 83 N------FGFLTSFFMKTKL 96 (104)
Q Consensus 83 ~------~~~~~~~~~~~~~ 96 (104)
. +....++.+.|.+
T Consensus 114 ~~ne~~ra~eler~~q~ff~ 133 (324)
T COG2988 114 SENETLRAYELERALQDFFQ 133 (324)
T ss_pred CCCchhhhHHHHHHHHHHHh
Confidence 3 2234455555544
No 71
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=94.02 E-value=0.076 Score=38.35 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=28.3
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhh
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYAL 60 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~ 60 (104)
|.=+++||+||+|+--+.-++.-++ . ..+....+.|+|. ..+|-..
T Consensus 7 p~rLFvgGlHG~Egk~t~~iL~~l~---~---------~~~~~G~l~i~pl-v~~~kYi 52 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDTSPILKRLK---P---------NDFNNGNLIIIPL-VENSKYI 52 (193)
T ss_pred ceEEEEeeccCcchhhHHHHHHHhC---c---------ccccCceEEEEeC-CCCCCce
Confidence 5668999999999955443333222 2 1234578899994 4444443
No 72
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.22 E-value=0.24 Score=35.40 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=27.1
Q ss_pred EEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcc
Q 034071 5 QFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPD 56 (104)
Q Consensus 5 ~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPD 56 (104)
+++||.||+|+-.++-++. +..+-. ++..+.|+|-+|+-
T Consensus 18 lfV~GlHGdEgk~te~ilr-l~~~~~------------~ng~l~Vip~v~n~ 56 (198)
T COG4073 18 LFVGGLHGDEGKATEPILR-LRVLPE------------ENGVLRVIPKVENG 56 (198)
T ss_pred EEEeeccCcccchhhhhhh-hcccCc------------cCceEEEEeccCCC
Confidence 7899999999988887776 222111 35678888855543
No 73
>KOG3641 consensus Zinc carboxypeptidase [Amino acid transport and metabolism]
Probab=73.11 E-value=2.1 Score=35.82 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=29.0
Q ss_pred HHhhcceeEEEEecCCcchhhhccccCCCCCCCCCCCCC-CcCCCC
Q 034071 39 RLIAENMHLHIFPSMNPDGYALKRLGNENNTVLNRDFPY-QVTSCN 83 (104)
Q Consensus 39 ~~ll~~~~i~ivP~~NPDG~~~~~R~n~~gvDLNRnf~~-~~~~~~ 83 (104)
..-|.+..+ +||+.||||+.+..+.. ++|..||.+.. -|...+
T Consensus 156 ~~~l~~~~v-~Vp~l~P~~~~~~~~~t-rsV~e~~~~~~P~~~H~p 199 (650)
T KOG3641|consen 156 NQTLRRLFV-FVPMLNPDGVVRGHYNT-RSVNENRQYLKPAVLHPP 199 (650)
T ss_pred hhhHhhhee-eeeccCCcEEEEEeeec-cccccccceeceecccCC
Confidence 333444433 39999999999885444 99999998644 355544
No 74
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=50.35 E-value=13 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHH
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICN 30 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~ 30 (104)
|.|++.+.+||=|-.|....+.|+++|-.
T Consensus 115 ~~vv~stTi~GYEGtGRgF~lkf~~~L~~ 143 (177)
T PF05127_consen 115 PRVVFSTTIHGYEGTGRGFSLKFLKQLKK 143 (177)
T ss_dssp SEEEEEEEBSSTTBB-HHHHHHHHCT---
T ss_pred CEEEEEeeccccccCCceeeeehhhhccc
Confidence 67899999999999999999999998754
No 75
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=41.50 E-value=6.4 Score=23.21 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEecCCcchhhhccccCCCCCC
Q 034071 47 LHIFPSMNPDGYALKRLGNENNTV 70 (104)
Q Consensus 47 i~ivP~~NPDG~~~~~R~n~~gvD 70 (104)
++|=|++||+=|......|+.|+.
T Consensus 25 i~~~Pmm~~eeYk~~Q~~nR~gI~ 48 (58)
T PF15061_consen 25 IYFRPMMNPEEYKKEQKINRAGIK 48 (58)
T ss_pred hhcccccChHHHHHHHHHHHhccc
Confidence 678899999999988888877765
No 76
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.73 E-value=8.1 Score=31.22 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=17.2
Q ss_pred CCcchhhhccccCCCCCCCCCCCCCCc
Q 034071 53 MNPDGYALKRLGNENNTVLNRDFPYQV 79 (104)
Q Consensus 53 ~NPDG~~~~~R~n~~gvDLNRnf~~~~ 79 (104)
++++||...|+-. +||||||..|
T Consensus 244 i~~~GF~A~W~v~----~l~r~~~q~~ 266 (430)
T PF06123_consen 244 ITDSGFSAQWKVS----HLARNYPQQW 266 (430)
T ss_pred cCCCCceeEeeeh----hhccchhhHh
Confidence 3556666666665 7999999999
No 77
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=34.83 E-value=71 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.2
Q ss_pred hcceeEEEEecCCcchhhhc
Q 034071 42 AENMHLHIFPSMNPDGYALK 61 (104)
Q Consensus 42 l~~~~i~ivP~~NPDG~~~~ 61 (104)
+++..+++=+.+||||...-
T Consensus 125 fkd~qFf~Gesm~~dgmv~l 144 (165)
T PF00838_consen 125 FKDYQFFTGESMDPDGMVAL 144 (165)
T ss_dssp GGGCEEEEETTCCTTS-EEE
T ss_pred ccccccccccccCCCCcEEE
Confidence 46788999999999997754
No 78
>PRK02395 hypothetical protein; Provisional
Probab=30.67 E-value=1.4e+02 Score=22.23 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=35.0
Q ss_pred EEEEEccccCC--ChhHHHHHHHHHHHHHHhcC----------CChHHHHhhcc---eeEEEEecCCcchhh
Q 034071 3 TLQFIGNVHAD--EPVGRELLILLANWICNNHM----------KDPLVRLIAEN---MHLHIFPSMNPDGYA 59 (104)
Q Consensus 3 ~v~i~~giHG~--E~~g~~~~~~l~~~L~~~~~----------~d~~~~~ll~~---~~i~ivP~~NPDG~~ 59 (104)
.++++| ||. +..+.+.+..+++.|-+... ..|.+.+.++. .++.++|.+==.|+.
T Consensus 3 ~lllvg--HGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~~~~ivVvPlfL~~G~H 72 (279)
T PRK02395 3 ALVLVG--HGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVESDEVYVVPLFISEGYF 72 (279)
T ss_pred eEEEEe--CCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcCcCcEEEEeeEeccccc
Confidence 455554 776 45788888888888865321 34555555543 468899987655544
No 79
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.92 E-value=1.3e+02 Score=21.46 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=35.6
Q ss_pred EEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEec
Q 034071 4 LQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPS 52 (104)
Q Consensus 4 v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~ 52 (104)
++++||..-+|..=.+++.-+...+.--.+.+.+-+.+|++.+..++-+
T Consensus 74 fyv~G~~~ENEl~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~ 122 (175)
T KOG3343|consen 74 FYVVGSEEENELMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLAL 122 (175)
T ss_pred EEEecCcchhHHHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeeh
Confidence 6789999999987666666665554443446777788999999876643
No 80
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=27.88 E-value=1.8e+02 Score=25.59 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.5
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcc
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPD 56 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPD 56 (104)
|..+|.||=-.--......++.++..+......||.++ +...+.|+|-+|-.
T Consensus 568 P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~---~~lkVVFlenY~Vs 619 (798)
T PRK14985 568 PRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVG---DKLKVVFLPDYCVS 619 (798)
T ss_pred CeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhC---CceeEEEeCCCChH
Confidence 77777766444444455556677777776666777654 35678899988854
No 81
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=26.37 E-value=92 Score=22.19 Aligned_cols=19 Identities=5% Similarity=0.118 Sum_probs=16.4
Q ss_pred cceeEEEEecCCcchhhhc
Q 034071 43 ENMHLHIFPSMNPDGYALK 61 (104)
Q Consensus 43 ~~~~i~ivP~~NPDG~~~~ 61 (104)
++..|++=+++||||...-
T Consensus 130 kd~qFf~GeSmd~dgmv~l 148 (172)
T PTZ00151 130 DDFEFYLGESLDCEAGLIY 148 (172)
T ss_pred CCceEeecCCCCCCccEEE
Confidence 5788999999999998764
No 82
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=26.29 E-value=59 Score=26.95 Aligned_cols=90 Identities=8% Similarity=-0.045 Sum_probs=47.8
Q ss_pred cCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcchhhhc--------------cccCCCCCCCCCCCC
Q 034071 11 HADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPDGYALK--------------RLGNENNTVLNRDFP 76 (104)
Q Consensus 11 HG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~--------------~R~n~~gvDLNRnf~ 76 (104)
||+++++..+-.-.|+-+.+. +........+....++++..|++|++.. |+.+.+.-+|+-+-+
T Consensus 152 ~~n~~i~~Lv~~trIHlmPSm--NPDGyE~a~~~~~~~~~GR~Nang~DLNrnFPd~~~~~~~~~~~~~~n~~l~~~~~~ 229 (500)
T KOG2649|consen 152 GKDPRITQLVNNTRIHIMPSM--NPDGYEIAKRGDRGWATGRNNANGVDLNRNFPDQFRLVYFIVTFDLLNSHLIMFNDD 229 (500)
T ss_pred CCChHHHHHHhhceEEEeccc--CcchhhhhhcccccceecccCccccchhccCcccccceeeeeeeccccccccccccc
Confidence 666666665555445444332 2222233344777899999999999975 112233444443333
Q ss_pred CCcCCCCchHHHHHHHhhhhcccccc
Q 034071 77 YQVTSCNFGFLTSFFMKTKLNLKIVL 102 (104)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (104)
..--+.+..-.-+.++++....-..|
T Consensus 230 ~~~~~pEt~Avm~W~~~~pFvLSAnL 255 (500)
T KOG2649|consen 230 LNLRQPETIAVMKWLRDIPFVLSANL 255 (500)
T ss_pred ccccCccHHHHHHHHhhcceeeeccc
Confidence 33344444455555555544443333
No 83
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=26.27 E-value=50 Score=20.81 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=14.8
Q ss_pred hHHHHhhcceeEEEEec
Q 034071 36 PLVRLIAENMHLHIFPS 52 (104)
Q Consensus 36 ~~~~~ll~~~~i~ivP~ 52 (104)
..+.+.|+.++|.+||+
T Consensus 64 dAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 64 DAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHhccCCceeeec
Confidence 45788999999999997
No 84
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=25.45 E-value=2e+02 Score=25.30 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=34.3
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcc
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPD 56 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPD 56 (104)
|..+|.||=-.--......++.++..+......||.+ -+...+.|+|-+|-.
T Consensus 566 P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v---~~~lkVVFlenY~Vs 617 (794)
T TIGR02093 566 PRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAV---GDKLKVVFVPNYNVS 617 (794)
T ss_pred CeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhh---CCceeEEEeCCCChH
Confidence 7777777644444444555666777777655567765 346678899988854
No 85
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=24.79 E-value=1.5e+02 Score=21.80 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=34.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHHhcCC-----------------ChHHHHhhcc-eeEEEE-----ecCCcchhhhc
Q 034071 8 GNVHADEPVGRELLILLANWICNNHMK-----------------DPLVRLIAEN-MHLHIF-----PSMNPDGYALK 61 (104)
Q Consensus 8 ~giHG~E~~g~~~~~~l~~~L~~~~~~-----------------d~~~~~ll~~-~~i~iv-----P~~NPDG~~~~ 61 (104)
||+++++..+...+.+.++..++.+.. ....+.|.+. ..+..+ -++||||....
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~ 77 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVE 77 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHH
Confidence 678888888888888888888877431 1233444443 333333 35799998765
No 86
>PRK11715 inner membrane protein; Provisional
Probab=24.76 E-value=23 Score=28.73 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=17.4
Q ss_pred CcchhhhccccCCCCCCCCCCCCCCcCCCC
Q 034071 54 NPDGYALKRLGNENNTVLNRDFPYQVTSCN 83 (104)
Q Consensus 54 NPDG~~~~~R~n~~gvDLNRnf~~~~~~~~ 83 (104)
+++||...|+-+ +||||||..|.++.
T Consensus 252 t~~GF~A~W~is----~l~r~~~q~~~~~~ 277 (436)
T PRK11715 252 SESGFQAQWQVS----HLARNYPQVFASGQ 277 (436)
T ss_pred CCCCeeeEeech----hhcCchhhhhhhcc
Confidence 444555555554 69999999887754
No 87
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=24.42 E-value=91 Score=19.17 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=32.2
Q ss_pred cCC-ChhHHHHHHHHHHHHHHhcC----------CChHHHHhhc------ceeEEEEecCCcchhhhc
Q 034071 11 HAD-EPVGRELLILLANWICNNHM----------KDPLVRLIAE------NMHLHIFPSMNPDGYALK 61 (104)
Q Consensus 11 HG~-E~~g~~~~~~l~~~L~~~~~----------~d~~~~~ll~------~~~i~ivP~~NPDG~~~~ 61 (104)
||. +..+.+.+..+++.|-.... ..+.+.+.++ .-+++|+|.+==.|+...
T Consensus 1 HGSr~~~~~~~~~~la~~l~~~~~~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~~ 68 (105)
T PF01903_consen 1 HGSRDPEANAELEDLADRLRERLPVPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPGYHVK 68 (105)
T ss_dssp -STSSCHHHHHHHHHHHHHHHHTSSEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCccchH
Confidence 554 55677777888887777542 2444444443 348999999877775543
No 88
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.91 E-value=2.3e+02 Score=25.04 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=33.6
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHHhcCCChHHHHhhcceeEEEEecCCcc
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICNNHMKDPLVRLIAENMHLHIFPSMNPD 56 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPD 56 (104)
|..+|.||=-.--......++.++..+.....+||.+ -+...+.|+|-+|-.
T Consensus 569 P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v---~~~lkVVFlenY~Vs 620 (797)
T cd04300 569 PRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDV---GDKLKVVFLPNYNVS 620 (797)
T ss_pred CeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhc---CCceEEEEeCCCChH
Confidence 7777776644344444555666677666655567765 345678899988854
No 89
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=1.3e+02 Score=22.25 Aligned_cols=24 Identities=21% Similarity=0.039 Sum_probs=19.5
Q ss_pred EEEccccCCChhHHHHHHHHHHHH
Q 034071 5 QFIGNVHADEPVGRELLILLANWI 28 (104)
Q Consensus 5 ~i~~giHG~E~~g~~~~~~l~~~L 28 (104)
+|.+|.|..|..|.+++..++++.
T Consensus 213 ~i~~gH~~tE~~g~~~l~~~l~~~ 236 (250)
T COG0327 213 VIDAGHYATERPGLKALAELLKEL 236 (250)
T ss_pred EEecCchHHHHHHHHHHHHHHHHh
Confidence 678999999999999777776653
No 90
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=20.92 E-value=1.6e+02 Score=20.69 Aligned_cols=51 Identities=6% Similarity=-0.061 Sum_probs=24.8
Q ss_pred EEEEccc-cCCChhHHHHHHHHHHHHHH-hcC------CChH--HHHhhcceeEEEEecCC
Q 034071 4 LQFIGNV-HADEPVGRELLILLANWICN-NHM------KDPL--VRLIAENMHLHIFPSMN 54 (104)
Q Consensus 4 v~i~~gi-HG~E~~g~~~~~~l~~~L~~-~~~------~d~~--~~~ll~~~~i~ivP~~N 54 (104)
|+|++|- +|.+.-....+..+++.+++ ... +++. -.+.|++.+++|+-..+
T Consensus 2 vLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~ 62 (217)
T PF06283_consen 2 VLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTG 62 (217)
T ss_dssp EEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SS
T ss_pred EEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCC
Confidence 5555554 44333355667777777776 211 2211 12346777776665544
No 91
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.84 E-value=64 Score=22.29 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=12.9
Q ss_pred hcceeEEEEecCCc--chhhhc
Q 034071 42 AENMHLHIFPSMNP--DGYALK 61 (104)
Q Consensus 42 l~~~~i~ivP~~NP--DG~~~~ 61 (104)
|...-..|+|+ || +|-+.-
T Consensus 39 L~~~GY~ViPV-NP~~~~~eiL 59 (140)
T COG1832 39 LQQKGYRVIPV-NPKLAGEEIL 59 (140)
T ss_pred HHHCCCEEEee-CcccchHHhc
Confidence 33333678998 99 886654
No 92
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.22 E-value=1.3e+02 Score=23.36 Aligned_cols=56 Identities=7% Similarity=-0.067 Sum_probs=33.0
Q ss_pred EEEEEccccCCChhHHHHHHHHHHHHHHh--cC----CChHHHHhhc---ceeEEEEecCCcchhhhc
Q 034071 3 TLQFIGNVHADEPVGRELLILLANWICNN--HM----KDPLVRLIAE---NMHLHIFPSMNPDGYALK 61 (104)
Q Consensus 3 ~v~i~~giHG~E~~g~~~~~~l~~~L~~~--~~----~d~~~~~ll~---~~~i~ivP~~NPDG~~~~ 61 (104)
.|+|+||-|| .|.+.++++++.-+.- +. ...+..+... ...-+.+=+-|+|.....
T Consensus 40 ~vLITGgg~G---lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 40 IVLITGGGSG---LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRL 104 (300)
T ss_pred EEEEeCCCch---HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHH
Confidence 5889999987 8999999998854321 00 1122222222 244566666666666554
No 93
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=20.10 E-value=89 Score=27.29 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=26.7
Q ss_pred cEEEEEccccCCChhHHHHHHHHHHHHHH
Q 034071 2 MTLQFIGNVHADEPVGRELLILLANWICN 30 (104)
Q Consensus 2 P~v~i~~giHG~E~~g~~~~~~l~~~L~~ 30 (104)
+.++++.-|||-|-+|....+.|.+.|-+
T Consensus 348 ~rv~~sTTIhGYEGtGRgF~lkf~~~l~~ 376 (758)
T COG1444 348 PRVLFSTTIHGYEGTGRGFSLKFLARLRK 376 (758)
T ss_pred CceEEEeeecccccCChHHHHHHHHHhcc
Confidence 67899999999999999999999998865
Done!