BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034072
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 335 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLG 394
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LT++I+S+T
Sbjct: 395 TPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDT 429
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 78/95 (82%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 344 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 403
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LTV+I+ +T
Sbjct: 404 TPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 438
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 78/95 (82%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 331 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 390
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LTV+I+ +T
Sbjct: 391 TPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 425
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 78/95 (82%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 344 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 403
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LTV+I+ +T
Sbjct: 404 TPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 438
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 78/95 (82%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 344 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 403
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LTV+I+ +T
Sbjct: 404 TPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 438
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 74/94 (78%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 355 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 414
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSR F E+DF +V F D V + +++KS+T
Sbjct: 415 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT 448
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 126 bits (316), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/93 (60%), Positives = 76/93 (81%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+L +L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 339 LGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 398
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93
TPALTSRG +EEDF KVA+F ++LT++I+S
Sbjct: 399 TPALTSRGLLEEDFQKVAHFIHRGIELTLQIQS 431
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMG 60
GY +V+GGT+NHL LV+L+ KG+ G E+ L+AV I NKN +P D V GIR+G
Sbjct: 301 GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIG 360
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAV 85
TPA+T+RGF E+ VA D A+
Sbjct: 361 TPAITTRGFTPEEMPLVAELIDRAL 385
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 2 GYELVSGGTENHLVLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRM 59
G+ +VSGGT+NHLV V++K G+ G E+ L++V I NKNT+P D V GIR+
Sbjct: 303 GFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRL 362
Query: 60 GTPALTSRGFVEEDFAKVAYFFDAAVK 86
GTPA T+RGF E+ F +VA A+K
Sbjct: 363 GTPAATTRGFDEKAFEEVAKIISLALK 389
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMG 60
G +LV+GGT+NHL+LV+L+ KG+ G++VE+ LE I NKN +P D + GIR+G
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 61 TPALTSRGFVEEDFAKV 77
TPA T+RGF +F +V
Sbjct: 370 TPAGTTRGFGAAEFREV 386
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPGVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMG 60
G +VSGGT+ HLVLV+L++ +DG E +L V I N+N VP D MV G+R+G
Sbjct: 327 GVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIG 386
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAV 85
TPAL +RGF + +F +VA A+
Sbjct: 387 TPALATRGFGDTEFTEVADIIATAL 411
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
GY++VSGGT+NHL LV+L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 306 GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVG 365
Query: 61 TPALTSRGFVEEDFAKVA 78
TPA+T RGF E + ++A
Sbjct: 366 TPAITRRGFKEAEAKELA 383
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
GY++VSGGT+NHL LV+L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 306 GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVG 365
Query: 61 TPALTSRGFVEEDFAKVA 78
TPA+T RGF E + ++A
Sbjct: 366 TPAITRRGFKEAEAKELA 383
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NK T+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKATIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVA 78
T A+T+RGF E+ ++A
Sbjct: 360 TAAVTTRGFGLEEMDEIA 377
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
GY++VSGGT+NHL LV+L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 306 GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVG 365
Query: 61 TPALTSRGFVEEDFAKVA 78
TPA+T RGF E + ++A
Sbjct: 366 TPAITRRGFKEAEAKELA 383
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
GY++VSGGTENHL L++L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 309 GYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIG 368
Query: 61 TPALTSRGFVEEDFAKVA 78
+PA+T RGF E + ++A
Sbjct: 369 SPAVTRRGFKEAEVKELA 386
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 3 YELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGT 61
++LVS GT+NHLVL + ++ G + L I ANKNTVPG++ S + G+R+GT
Sbjct: 303 FKLVSDGTDNHLVLXSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGT 362
Query: 62 PALTSRGFVEEDFAKVAYF 80
PALT+RGF E++ V+ +
Sbjct: 363 PALTARGFKEKEXEIVSNY 381
>pdb|3HGX|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase K42a Mutant In Complex With Salicylate
And Pyruvate
pdb|3HGX|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase K42a Mutant In Complex With Salicylate
And Pyruvate
Length = 101
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 26 GSRVEKVLEAVHIAANKNTVPG--DVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83
G R++ V A AA++ +P V+AM+P R FVE FA++ +++
Sbjct: 29 GRRMDYVKAASRFAASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWY-- 86
Query: 84 AVKLTVKIKSETQGS 98
+ +K +T+G+
Sbjct: 87 -IAEQIKYWRQTRGA 100
>pdb|3HGW|C Chain C, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase I87t Mutant
pdb|3HGW|D Chain D, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase I87t Mutant
pdb|3HGW|A Chain A, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase I87t Mutant
pdb|3HGW|B Chain B, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
Pyruvate Lyase I87t Mutant
Length = 101
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 26 GSRVEKVLEAVHIAANKNTVPG--DVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83
G R++ V A A++ +P V+AM+P R FVE FA++ +++ A
Sbjct: 29 GRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYTA 88
Query: 84 AVKLTVKIKSETQGS 98
+K +T+G+
Sbjct: 89 E---QIKYWRQTRGA 100
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVP-----GGIRMGTPALTSR-GFVEEDFAKVAYFF 81
+++++ E + NT+P D++ ++P ++ TP L GF+ D V+ +
Sbjct: 240 KIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKY 299
Query: 82 D 82
D
Sbjct: 300 D 300
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 3 YELVSGGTENHLVLVNLKNKGIDGSRVEK--VLE--AVHIAANKNTVPGD-------VSA 51
Y+ + G T V++N + K + G+ + K V+E ++ N+V G+ V+A
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 342
Query: 52 MVPGGIR-------MGTPALTSRGFVEEDFAKVAYFFDA-------AVKLTVKIKSETQG 97
+ I G PA+ + + V++ D +V +K E +G
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKG 402
Query: 98 SYQCFL 103
YQCF+
Sbjct: 403 MYQCFV 408
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 3 YELVSGGTENHLVLVNLKNKGIDGSRVEK--VLE--AVHIAANKNTVPGD-------VSA 51
Y+ + G T V++N + K + G+ + K V+E ++ N+V G+ V+A
Sbjct: 247 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 306
Query: 52 MVPGGIR-------MGTPALTSRGFVEEDFAKVAYFFDA-------AVKLTVKIKSETQG 97
+ I G PA+ + + V++ D +V +K E +G
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKG 366
Query: 98 SYQCFL 103
YQCF+
Sbjct: 367 MYQCFV 372
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 3 YELVSGGTENHLVLVNLKNKGIDGSRVEK--VLE--AVHIAANKNTVPGD-------VSA 51
Y+ + G T V++N + K + G+ + K V+E ++ N+V G+ V+A
Sbjct: 253 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 312
Query: 52 MVPGGIR-------MGTPALTSRGFVEEDFAKVAYFFDA-------AVKLTVKIKSETQG 97
+ I G PA+ + + V++ D +V +K E +G
Sbjct: 313 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKG 372
Query: 98 SYQCFL 103
YQCF+
Sbjct: 373 MYQCFV 378
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 3 YELVSGGTENHLVLVNLKNKGIDGSRVEK--VLE--AVHIAANKNTVPGD-------VSA 51
Y+ + G T V++N + K + G+ + K V+E ++ N+V G+ V+A
Sbjct: 250 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 309
Query: 52 MVPGGIR-------MGTPALTSRGFVEEDFAKVAYFFDA-------AVKLTVKIKSETQG 97
+ I G PA+ + + V++ D +V +K E +G
Sbjct: 310 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKG 369
Query: 98 SYQCFL 103
YQCF+
Sbjct: 370 MYQCFV 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,042,909
Number of Sequences: 62578
Number of extensions: 108036
Number of successful extensions: 269
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 38
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)