BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034072
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria
pringlei PE=2 SV=1
Length = 517
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/97 (93%), Positives = 92/97 (94%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT
Sbjct: 375 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 434
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGS 98
PALTSRGFVEEDFAKVAY FD AVKL VKIK E QG+
Sbjct: 435 PALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGT 471
>sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria
pringlei PE=2 SV=1
Length = 517
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/97 (92%), Positives = 93/97 (95%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GYELVSGGTENHLVLVNLKNKGIDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT
Sbjct: 375 GYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 434
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGS 98
PALTSRGFVEEDFAKVAYFFD AVKL VKIK E +G+
Sbjct: 435 PALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGT 471
>sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum
PE=2 SV=1
Length = 518
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/97 (89%), Positives = 94/97 (96%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GYELVSGGT+NHLVLVN+KNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT
Sbjct: 375 GYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 434
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGS 98
PALTSRGF+EEDF KVA FFDAAVK+ VK+K+ETQG+
Sbjct: 435 PALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGT 471
>sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum
PE=1 SV=1
Length = 518
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 92/97 (94%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY+LVSGGTENHLVLVNLKNKGIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGT
Sbjct: 375 GYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGT 434
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGS 98
PALTSRGFVEEDF KVA +FDAAV L +K+K+E++G+
Sbjct: 435 PALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGT 471
>sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis
thaliana GN=SHM1 PE=1 SV=1
Length = 517
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 91/97 (93%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GYELVSGGT+NHLVLVNLK KGIDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGT
Sbjct: 374 GYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGT 433
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGS 98
PALTSRGFVEEDFAKVA +FD AV + +K+KSE QG+
Sbjct: 434 PALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGT 470
>sp|Q7S5N8|GLYM_NEUCR Putative serine hydroxymethyltransferase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU05805 PE=3 SV=1
Length = 527
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 78/91 (85%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY +VSGGT+NHLVL++LK +GIDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+G
Sbjct: 379 LGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIG 438
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91
TPA+T+RGF EEDFA+VA D AV + V+I
Sbjct: 439 TPAMTTRGFTEEDFARVADIIDRAVTIAVRI 469
>sp|Q3SZ20|GLYM_BOVIN Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus
GN=SHMT2 PE=2 SV=1
Length = 504
Score = 132 bits (332), Expect = 6e-31, Method: Composition-based stats.
Identities = 60/94 (63%), Positives = 76/94 (80%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 369 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 428
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSRGF+E+DF KV F D V + +++KS+T
Sbjct: 429 PALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT 462
>sp|Q5RFK5|GLYC_PONAB Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1
PE=2 SV=1
Length = 483
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 345 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLG 404
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LT++I+S+T
Sbjct: 405 TPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDT 439
>sp|P34896|GLYC_HUMAN Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1
PE=1 SV=1
Length = 483
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 345 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLG 404
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LT++I+S+T
Sbjct: 405 TPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDT 439
>sp|P07511|GLYC_RABIT Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus
GN=SHMT1 PE=1 SV=2
Length = 484
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 78/95 (82%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 345 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 404
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
TPALTSRG +E+DF KVA+F ++LTV+I+ +T
Sbjct: 405 TPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 439
>sp|P50431|GLYC_MOUSE Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1
PE=1 SV=3
Length = 478
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 77/94 (81%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY++V+GG++NHL+L++L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 339 LGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 398
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
TPALTSRG +EEDF KVA+F ++LT++I+S
Sbjct: 399 TPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSH 432
>sp|Q6CLQ5|GLYM_KLULA Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SHM1 PE=3 SV=1
Length = 498
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 78/93 (83%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
G+ELVSGGT+ HL+L+NL N GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GT
Sbjct: 361 GFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGT 420
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
PA+T+RGF ++FA+VA + D AVKL + IKS+
Sbjct: 421 PAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQ 453
>sp|Q5E9P9|GLYC_BOVIN Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1
PE=2 SV=3
Length = 484
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 75/92 (81%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY +V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 345 LGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 404
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIK 92
TPALTSRG +EEDF KVA+F ++LT++I+
Sbjct: 405 TPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ 436
>sp|P35623|GLYC_SHEEP Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1
PE=1 SV=3
Length = 484
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 75/92 (81%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY +V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+G
Sbjct: 345 LGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG 404
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIK 92
TPALTSRG +EEDF KVA+F ++LT++I+
Sbjct: 405 TPALTSRGLLEEDFRKVAHFIHRGIELTLQIQ 436
>sp|O13425|GLYM_CANAX Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans
GN=SHM1 PE=3 SV=1
Length = 493
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
G++LVS GT+ HL+LV+L+++ IDG+RVE VLE +IAANKNTVPGDVSA+ P G+R+GT
Sbjct: 358 GFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGT 417
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQG 97
PA+T+RGF E+F KVA F D AV + +++K++ QG
Sbjct: 418 PAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQG 453
>sp|P34897|GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens
GN=SHMT2 PE=1 SV=3
Length = 504
Score = 127 bits (319), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/94 (61%), Positives = 74/94 (78%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 369 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 428
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSR F E+DF +V F D V + +++KS+T
Sbjct: 429 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT 462
>sp|P14519|GLYM_RABIT Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus
cuniculus GN=SHMT2 PE=1 SV=2
Length = 504
Score = 125 bits (314), Expect = 9e-29, Method: Composition-based stats.
Identities = 57/94 (60%), Positives = 73/94 (77%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 369 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 428
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSR F E+DF +V F D V + +++K +T
Sbjct: 429 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKT 462
>sp|Q10104|GLYM_SCHPO Serine hydroxymethyltransferase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=shm2 PE=3 SV=2
Length = 488
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 74/90 (82%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY+LVSGGT+ HLVLV+L +KG+DG+RVE++LE V+I+ANKNTVPGD SA++P G+R+GT
Sbjct: 353 GYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGT 412
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91
PA T+RGF E+DF +V D V LT KI
Sbjct: 413 PACTTRGFDEKDFERVVELIDEVVSLTKKI 442
>sp|P37292|GLYM_YEAST Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SHM1 PE=1
SV=2
Length = 490
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 77/93 (82%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
MGY+LVSGGT+NHL++++L +DG+RVE +L A++IAANKNT+PGD SA+ P G+R+G
Sbjct: 352 MGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIG 411
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93
TPA+T+RGF E+F++VA + D+AVKL +K+
Sbjct: 412 TPAMTTRGFGREEFSQVAKYIDSAVKLAENLKT 444
>sp|P34898|GLYC_NEUCR Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=for PE=3 SV=2
Length = 480
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 75/93 (80%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY+LVS GT++H+VLV+L+ G+DG+RVE +LE ++I NKN VPGD SA+ PGG+R+G
Sbjct: 337 LGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIG 396
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93
TPA+TSRGF E DF KVA F D AVKL +I++
Sbjct: 397 TPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQA 429
>sp|P50432|GLYC_CAEEL Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32
PE=1 SV=2
Length = 507
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 73/101 (72%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY L +GGT+NHL+LV+L+ G++G+R E VL+ HIA NKNT PGDVSA+ PGGIR+GT
Sbjct: 371 GYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGT 430
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCF 102
PALTSRGF E+DF KV F V++ K +E + + F
Sbjct: 431 PALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDF 471
>sp|Q60V73|GLYC_CAEBR Serine hydroxymethyltransferase OS=Caenorhabditis briggsae
GN=mel-32 PE=3 SV=3
Length = 511
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 73/101 (72%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY L +GGT+NHL+LV+L+ G++G+R E +L+ HIA NKNT PGDVSA+ PGGIR+GT
Sbjct: 375 GYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGT 434
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCF 102
PALTSRGF E+DF KV F V++ K +E + + F
Sbjct: 435 PALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDF 475
>sp|Q6FUP6|GLYC_CANGA Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SHM2 PE=3 SV=1
Length = 469
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 73/93 (78%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY LVS GT++H+VLV+L+ KG+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G
Sbjct: 336 LGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIG 395
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93
PA+T+RG EEDF ++ + D AVK + +S
Sbjct: 396 APAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQS 428
>sp|Q758F0|GLYM_ASHGO Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SHM1 PE=3 SV=1
Length = 497
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 74/93 (79%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
G+ LVSGGT+ HL+L++L GIDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GT
Sbjct: 360 GFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGT 419
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
PA+T+RGF +F +VA + + AVKL + +KS+
Sbjct: 420 PAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ 452
>sp|O13426|GLYC_CANAL Serine hydroxymethyltransferase, cytosolic OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SHM2 PE=1 SV=4
Length = 470
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 74/93 (79%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY+LVS GT++H+VLV+LK+K IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G
Sbjct: 338 GYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGA 397
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
PA+T+RG EEDF K+ + D AV +++S+
Sbjct: 398 PAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQ 430
>sp|Q6FQ44|GLYM_CANGA Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SHM1 PE=3 SV=1
Length = 485
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 80/93 (86%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
G+ELVSGGT+NHL+L+NL N GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GT
Sbjct: 348 GFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGT 407
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
PA+T+RGF E+DF KVA + D AVKL++ +KS+
Sbjct: 408 PAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQ 440
>sp|P37291|GLYC_YEAST Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SHM2 PE=1
SV=2
Length = 469
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 73/93 (78%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+GY LVS GT++H+VLV+L+ KG+DG+RVE + E ++IA NKN++PGD SA+VPGG+R+G
Sbjct: 336 LGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIG 395
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93
PA+T+RG EEDF ++ + + AV+ +++
Sbjct: 396 APAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQ 428
>sp|Q75BQ6|GLYC_ASHGO Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SHM2 PE=3 SV=2
Length = 469
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 73/93 (78%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
+ Y LVS GT++H+VLV+L+ KG+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G
Sbjct: 336 LNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIG 395
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93
PA+T+RG EEDFA++ + + AV++ I+
Sbjct: 396 APAMTTRGMGEEDFARIVGYINRAVEIARSIQQ 428
>sp|O13972|GLYD_SCHPO Probable serine hydroxymethyltransferase, cytosolic
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC24C9.12c PE=3 SV=1
Length = 467
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 70/93 (75%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY+L + GT++H+VLV++K+KG+DG+R E+VLE ++I NKNTVP D SA P GIR+GT
Sbjct: 331 GYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGT 390
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
PA+T+RGF E+DF +V + D A+ ++ E
Sbjct: 391 PAMTTRGFKEQDFVRVVDYIDRALTFAANLQKE 423
>sp|Q54EW1|GLYC2_DICDI Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum
GN=shmt2 PE=3 SV=1
Length = 481
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LV+ GT+NHLVL +L+ +GI GS++EK + HI NKN V GD +A+ PGG+R+G
Sbjct: 351 GYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGA 410
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
PALTSRG E+DF KV F D VK+++ I+S+
Sbjct: 411 PALTSRGLKEQDFVKVVDFLDRVVKISLDIQSK 443
>sp|A7GGI2|GLYA_CLOBL Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1
Length = 413
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ L+SGGT+NHL+L++L NK I G EK+L++V I NKNT+P + +S + GIR+G
Sbjct: 302 GFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ K+AYF + +++
Sbjct: 362 TPAVTTRGFKEEEMKKIAYFMNYSIE 387
>sp|C1FTF1|GLYA_CLOBJ Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=glyA PE=3 SV=1
Length = 413
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ L+SGGT+NHL+L++L NK I G EK+L++V I NKNT+P + +S + GIR+G
Sbjct: 302 GFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ K+AYF + +++
Sbjct: 362 TPAVTTRGFKEEEMKKIAYFMNYSIE 387
>sp|A5I526|GLYA_CLOBH Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3
SV=1
Length = 413
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ L+SGGT+NHL+L++L NK I G EK+L++V I NKNT+P + +S + GIR+G
Sbjct: 302 GFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ K+AYF + +++
Sbjct: 362 TPAVTTRGFKEEEMKKIAYFMNYSIE 387
>sp|A7FWM6|GLYA_CLOB1 Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
ATCC 19397 / Type A) GN=glyA PE=3 SV=1
Length = 413
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ L+SGGT+NHL+L++L NK I G EK+L++V I NKNT+P + +S + GIR+G
Sbjct: 302 GFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ K+AYF + +++
Sbjct: 362 TPAVTTRGFKEEEMKKIAYFMNYSIE 387
>sp|B1KXQ5|GLYA_CLOBM Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=glyA PE=3 SV=1
Length = 413
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ L+SGGT+NHL+L++L NK I G EK+L++V I NKNT+P + +S + GIR+G
Sbjct: 302 GFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ K+AYF + +++
Sbjct: 362 TPAVTTRGFKEEEMKKIAYFMNYSIE 387
>sp|C3L181|GLYA_CLOB6 Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
657 / Type Ba4) GN=glyA PE=3 SV=1
Length = 413
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ L+SGGT+NHL+L++L NK I G EK+L++V I NKNT+P + +S + GIR+G
Sbjct: 302 GFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ K+AYF + +++
Sbjct: 362 TPAVTTRGFKEEEMKKIAYFMNYSIE 387
>sp|B1IJJ8|GLYA_CLOBK Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
Okra / Type B1) GN=glyA PE=3 SV=1
Length = 413
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ L+SGGT+NHL+L++L NK I G EK+L++V I NKNT+P + +S + GIR+G
Sbjct: 302 GFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ K+AYF + +++
Sbjct: 362 TPAVTTRGFKEEEMKKIAYFMNYSIE 387
>sp|Q54Z26|GLYC1_DICDI Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum
GN=shmt1 PE=1 SV=1
Length = 457
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY+LV+ GT+NHL+L +L+ K + G++ EK + +I NKN V GD +A+ PGGIR+G+
Sbjct: 328 GYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGS 387
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIK 92
ALTSRG E DF K+A F D V ++++I+
Sbjct: 388 SALTSRGLKEADFEKIADFLDRIVSISLEIQ 418
>sp|A5N7P5|GLYA_CLOK5 Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain
ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1
Length = 411
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L NK I G +E++L+ V+I NKN +P D + V GIR+G
Sbjct: 302 GFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ KVAYF + AV+
Sbjct: 362 TPAVTTRGFKEEEMKKVAYFINKAVE 387
>sp|B9E156|GLYA_CLOK1 Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain
NBRC 12016) GN=glyA PE=3 SV=1
Length = 411
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L NK I G +E++L+ V+I NKN +P D + V GIR+G
Sbjct: 302 GFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF EE+ KVAYF + AV+
Sbjct: 362 TPAVTTRGFKEEEMKKVAYFINKAVE 387
>sp|A4XL61|GLYA_CALS8 Serine hydroxymethyltransferase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA
PE=3 SV=1
Length = 417
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+NKGI G EK L++++I NKN +P D S MV GIR+G
Sbjct: 305 GFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLG 364
Query: 61 TPALTSRGFVEEDFAKVA 78
TPA+T+RGF EED +VA
Sbjct: 365 TPAVTTRGFKEEDMIEVA 382
>sp|B2A3H6|GLYA_NATTJ Serine hydroxymethyltransferase OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA
PE=3 SV=1
Length = 412
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRM 59
+GY+LV+GG++NHL+LV+L+ KG+ G + E+VL+ VHI NKN VP D V G+R+
Sbjct: 299 LGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRL 358
Query: 60 GTPALTSRGFVEEDFAKVAYFFDAAV 85
GTPA+T+RGF E++ +VA D +
Sbjct: 359 GTPAVTTRGFAEDEIKEVAQLLDKVI 384
>sp|Q2S4G9|GLYA_SALRD Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM
13855 / M31) GN=glyA PE=3 SV=1
Length = 432
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVP-GDVSAMVPGGIRMG 60
GY+LVS GT+NHLVL++L+NKG+ G E+ LEA I ANKN VP D S V G+R+G
Sbjct: 317 GYDLVSDGTDNHLVLIDLRNKGLTGKEAEQALEAAGITANKNMVPFDDKSPFVTSGLRLG 376
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF ++FA VA D ++
Sbjct: 377 TPAMTTRGFGPDEFAHVAEMIDRVLQ 402
>sp|Q97GV1|GLYA_CLOAB Serine hydroxymethyltransferase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=glyA PE=3 SV=1
Length = 411
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ +VSGGT+NHL+LV+L NK I G E +L++V I ANKNT+P + S + GIRMG
Sbjct: 302 GFRIVSGGTDNHLLLVDLTNKNITGKDAEHLLDSVGITANKNTIPFEKKSPFITSGIRMG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TP++T+RGF EE+ KVAYF + ++
Sbjct: 362 TPSVTTRGFKEEEMKKVAYFINYVIE 387
>sp|B9MR57|GLYA_CALBD Serine hydroxymethyltransferase OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=glyA PE=3
SV=1
Length = 415
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+NKGI G EK+L+ +I NKN VP D S M+ GIR+G
Sbjct: 303 GFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLG 362
Query: 61 TPALTSRGFVEEDFAKVA 78
TPA+T+RGF E D +VA
Sbjct: 363 TPAVTTRGFKEGDMLEVA 380
>sp|Q1MS11|GLYA_LAWIP Serine hydroxymethyltransferase OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=glyA PE=3 SV=1
Length = 412
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 63/96 (65%), Gaps = 4/96 (4%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ LVSGGT+NHL+L++L NK I G EK L+ I NKNTVP + +S V GIR+G
Sbjct: 300 GFNLVSGGTDNHLLLIDLTNKKITGKDAEKALDQAGITVNKNTVPFETLSPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQ 96
TPALT+RG E+D KVA + A+ I +ETQ
Sbjct: 360 TPALTTRGLCEQDMIKVANWIVTALN---NINNETQ 392
>sp|A4J9B1|GLYA_DESRM Serine hydroxymethyltransferase OS=Desulfotomaculum reducens
(strain MI-1) GN=glyA PE=3 SV=1
Length = 413
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ GI G + E +L+ VHI NKN +P D V GIR+G
Sbjct: 302 GFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQ 96
TPA+T+RGF E+D KVA A+ L K +TQ
Sbjct: 362 TPAVTTRGFKEKDMDKVAEII--ALTLQEKDNPDTQ 395
>sp|A9KSH6|GLYA_CLOPH Serine hydroxymethyltransferase OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3
SV=1
Length = 412
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ LVSGGT+NHL+L++L+N I G E +L+ +I NKNTVP D S V GIR+G
Sbjct: 304 GFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLG 363
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQG 97
TPA+T+RGF E+D A VA VK K K + +
Sbjct: 364 TPAITTRGFNEKDMAVVAEAISLVVKDVDKNKEQAKA 400
>sp|A0PZX4|GLYA_CLONN Serine hydroxymethyltransferase OS=Clostridium novyi (strain NT)
GN=glyA PE=3 SV=1
Length = 411
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 3 YELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGT 61
++LVSGGT+NHL+L++L NK I G EK+L+++ I NKNT+P + S V GIR+GT
Sbjct: 303 FKLVSGGTDNHLLLIDLTNKDITGKDAEKLLDSIGITVNKNTIPFETKSPFVTSGIRIGT 362
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVK 86
PA+T+RGF EE+ ++AY + ++
Sbjct: 363 PAVTTRGFKEEEMKEIAYLINYVIE 387
>sp|Q183G0|GLYA_CLOD6 Serine hydroxymethyltransferase OS=Clostridium difficile (strain
630) GN=glyA PE=3 SV=1
Length = 414
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 3 YELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGT 61
++L+SGGT+NHL+L++L NK I G EK L+ +I ANKNT+P D + A+V GIR+GT
Sbjct: 302 FKLISGGTDNHLILLDLTNKNITGKAAEKRLDDAYITANKNTIPFDPNGALVTSGIRLGT 361
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PA+T+RG EED A +A D + + K+ T
Sbjct: 362 PAVTTRGMKEEDMAIIAEAIDLCLTYDEESKART 395
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,019,998
Number of Sequences: 539616
Number of extensions: 1381005
Number of successful extensions: 5617
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3981
Number of HSP's gapped (non-prelim): 856
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)