Query 034072
Match_columns 104
No_of_seqs 106 out of 1029
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2467 Glycine/serine hydroxy 100.0 8E-35 1.7E-39 235.5 9.8 97 1-97 340-436 (477)
2 COG0112 GlyA Glycine/serine hy 100.0 1.5E-34 3.2E-39 234.1 10.7 89 1-89 303-392 (413)
3 PLN02271 serine hydroxymethylt 100.0 2.5E-33 5.5E-38 235.6 9.8 95 1-95 454-548 (586)
4 PF00464 SHMT: Serine hydroxym 100.0 2.2E-30 4.7E-35 210.4 7.6 81 1-81 319-399 (399)
5 PLN03226 serine hydroxymethylt 99.9 2.9E-24 6.3E-29 176.8 10.8 95 1-95 333-427 (475)
6 PRK13580 serine hydroxymethylt 99.8 8E-21 1.7E-25 158.0 8.6 89 1-89 358-447 (493)
7 PTZ00094 serine hydroxymethylt 99.7 8.1E-16 1.8E-20 124.9 11.3 102 1-102 322-423 (452)
8 PRK13034 serine hydroxymethylt 99.6 2.1E-14 4.6E-19 115.8 10.3 86 2-87 306-392 (416)
9 PRK00011 glyA serine hydroxyme 99.1 2E-09 4.3E-14 85.5 10.9 86 2-87 303-389 (416)
10 cd00378 SHMT Serine-glycine hy 99.0 7.5E-09 1.6E-13 81.5 10.3 88 2-89 299-387 (402)
11 cd00617 Tnase_like Tryptophana 98.2 8.3E-06 1.8E-10 67.2 7.7 87 2-92 311-413 (431)
12 PRK13238 tnaA tryptophanase/L- 98.0 3E-05 6.5E-10 64.1 8.8 87 1-91 335-437 (460)
13 PRK06225 aspartate aminotransf 93.1 0.96 2.1E-05 35.5 8.9 69 10-86 307-375 (380)
14 TIGR01979 sufS cysteine desulf 92.9 0.27 5.9E-06 38.7 5.5 79 2-86 316-400 (403)
15 cd00616 AHBA_syn 3-amino-5-hyd 91.8 0.71 1.5E-05 35.3 6.5 76 2-81 253-351 (352)
16 PRK00950 histidinol-phosphate 91.3 1.5 3.4E-05 33.8 7.9 63 11-85 298-360 (361)
17 PRK02731 histidinol-phosphate 91.1 1.7 3.7E-05 33.7 8.0 63 11-86 303-365 (367)
18 PRK13520 L-tyrosine decarboxyl 90.2 2.4 5.1E-05 32.7 8.1 68 2-86 303-370 (371)
19 PLN02721 threonine aldolase 89.8 3.1 6.6E-05 31.8 8.3 66 8-86 285-351 (353)
20 cd06451 AGAT_like Alanine-glyo 89.3 2.7 5.9E-05 32.3 7.7 62 14-85 293-355 (356)
21 PRK09440 avtA valine--pyruvate 88.8 3.5 7.6E-05 32.8 8.2 70 12-87 338-411 (416)
22 TIGR01437 selA_rel uncharacter 88.3 1.7 3.7E-05 34.5 6.2 62 11-84 299-362 (363)
23 PRK05387 histidinol-phosphate 88.1 4.7 0.0001 31.0 8.3 62 11-86 291-352 (353)
24 PRK07179 hypothetical protein; 86.6 2.3 5.1E-05 33.8 6.0 75 2-86 323-397 (407)
25 PRK04366 glycine dehydrogenase 85.7 5.1 0.00011 33.2 7.8 71 10-88 376-449 (481)
26 PLN03227 serine palmitoyltrans 84.9 5.6 0.00012 32.0 7.5 76 9-88 298-383 (392)
27 PRK05958 8-amino-7-oxononanoat 84.6 3.8 8.1E-05 31.6 6.2 68 11-85 318-385 (385)
28 PRK08153 histidinol-phosphate 84.5 8.5 0.00018 30.3 8.2 65 10-86 300-364 (369)
29 PRK07908 hypothetical protein; 84.3 5 0.00011 31.1 6.8 62 10-86 284-346 (349)
30 PRK10534 L-threonine aldolase; 83.1 5.8 0.00013 30.3 6.6 65 2-85 267-331 (333)
31 PRK09331 Sep-tRNA:Cys-tRNA syn 83.1 5.7 0.00012 31.5 6.8 72 2-86 301-380 (387)
32 TIGR01141 hisC histidinol-phos 83.0 8 0.00017 29.6 7.4 64 2-81 282-345 (346)
33 PRK09064 5-aminolevulinate syn 82.6 4 8.7E-05 32.3 5.7 76 2-86 320-396 (407)
34 PRK10874 cysteine sulfinate de 82.0 5.8 0.00012 31.3 6.4 71 10-86 324-397 (401)
35 TIGR02539 SepCysS Sep-tRNA:Cys 81.9 11 0.00024 29.6 7.9 71 2-86 288-367 (370)
36 PRK13392 5-aminolevulinate syn 81.6 5.4 0.00012 31.7 6.1 76 2-86 320-396 (410)
37 PRK02610 histidinol-phosphate 81.5 8.9 0.00019 30.2 7.3 57 12-86 314-370 (374)
38 KOG1486 GTP-binding protein DR 81.4 3.1 6.8E-05 33.7 4.6 72 2-75 130-204 (364)
39 PRK06108 aspartate aminotransf 81.4 8.4 0.00018 29.9 7.0 63 13-86 317-381 (382)
40 PRK03321 putative aminotransfe 80.7 10 0.00022 29.3 7.2 56 12-86 295-350 (352)
41 PLN02376 1-aminocyclopropane-1 80.2 11 0.00024 31.5 7.7 66 13-87 365-438 (496)
42 TIGR01821 5aminolev_synth 5-am 80.2 4.8 0.0001 31.9 5.4 76 2-86 319-395 (402)
43 TIGR03403 nifS_epsilon cystein 80.2 12 0.00026 29.3 7.6 70 13-88 293-376 (382)
44 PRK15481 transcriptional regul 79.8 9.1 0.0002 30.7 6.9 65 12-86 366-430 (431)
45 cd06452 SepCysS Sep-tRNA:Cys-t 79.6 11 0.00024 29.3 7.2 71 2-85 282-360 (361)
46 TIGR03301 PhnW-AepZ 2-aminoeth 79.6 8.6 0.00019 29.2 6.4 62 14-85 293-355 (355)
47 cd06454 KBL_like KBL_like; thi 78.7 11 0.00025 28.5 6.9 66 12-83 282-347 (349)
48 TIGR03392 FeS_syn_CsdA cystein 78.5 9 0.00019 30.2 6.4 70 11-86 322-394 (398)
49 PRK08361 aspartate aminotransf 78.4 14 0.0003 29.2 7.5 66 12-86 323-389 (391)
50 PLN00175 aminotransferase fami 78.2 11 0.00024 30.3 7.0 70 11-86 341-412 (413)
51 PRK03158 histidinol-phosphate 78.1 15 0.00033 28.4 7.6 57 13-84 302-358 (359)
52 PLN03026 histidinol-phosphate 77.7 17 0.00036 28.9 7.8 61 10-83 318-378 (380)
53 PLN02822 serine palmitoyltrans 77.0 11 0.00025 31.3 6.9 75 9-87 395-477 (481)
54 PRK00451 glycine dehydrogenase 76.6 12 0.00027 30.0 6.9 73 2-84 373-445 (447)
55 TIGR02326 transamin_PhnW 2-ami 76.3 26 0.00056 27.1 8.4 75 2-86 284-361 (363)
56 COG1167 ARO8 Transcriptional r 76.0 22 0.00048 29.4 8.3 68 14-87 388-455 (459)
57 PRK05839 hypothetical protein; 75.7 17 0.00036 28.7 7.2 64 12-86 309-373 (374)
58 TIGR01976 am_tr_V_VC1184 cyste 75.7 11 0.00024 29.4 6.2 70 3-80 316-396 (397)
59 PRK14807 histidinol-phosphate 74.3 18 0.0004 28.1 7.1 58 12-84 292-349 (351)
60 cd00609 AAT_like Aspartate ami 74.2 12 0.00026 27.9 5.8 62 10-81 287-348 (350)
61 PRK13393 5-aminolevulinate syn 73.8 12 0.00027 29.7 6.1 77 2-87 319-396 (406)
62 PF05370 DUF749: Domain of unk 73.8 3.2 6.9E-05 27.8 2.3 35 8-44 45-79 (87)
63 PRK09105 putative aminotransfe 73.6 27 0.00059 27.6 8.0 59 11-85 310-368 (370)
64 PRK13479 2-aminoethylphosphona 73.3 18 0.0004 28.0 6.8 54 23-86 309-362 (368)
65 PRK05764 aspartate aminotransf 73.0 30 0.00065 27.0 8.0 73 2-86 313-390 (393)
66 PRK02948 cysteine desulfurase; 72.9 11 0.00023 29.5 5.5 61 22-86 299-373 (381)
67 TIGR01977 am_tr_V_EF2568 cyste 72.6 18 0.00039 27.9 6.6 66 12-83 304-375 (376)
68 PRK01533 histidinol-phosphate 72.3 22 0.00048 28.1 7.2 58 11-89 300-357 (366)
69 PRK07392 threonine-phosphate d 71.9 25 0.00054 27.4 7.3 69 2-86 288-358 (360)
70 PRK04870 histidinol-phosphate 71.7 21 0.00046 27.6 6.9 59 12-84 297-355 (356)
71 PRK05937 8-amino-7-oxononanoat 71.5 10 0.00022 29.9 5.1 54 23-86 296-349 (370)
72 PRK05664 threonine-phosphate d 71.5 20 0.00043 27.7 6.6 55 14-86 273-327 (330)
73 TIGR01814 kynureninase kynuren 71.4 22 0.00047 28.3 7.0 57 13-85 348-405 (406)
74 PRK06207 aspartate aminotransf 71.4 26 0.00057 28.0 7.5 64 13-86 336-401 (405)
75 PRK07777 aminotransferase; Val 71.2 25 0.00054 27.6 7.2 66 12-83 315-382 (387)
76 TIGR01885 Orn_aminotrans ornit 71.1 16 0.00034 29.0 6.1 49 24-85 352-400 (401)
77 PLN02955 8-amino-7-oxononanoat 70.6 18 0.00039 30.7 6.6 69 11-86 392-460 (476)
78 TIGR03812 tyr_de_CO2_Arch tyro 70.5 23 0.00049 27.3 6.8 58 10-83 315-372 (373)
79 TIGR03402 FeS_nifS cysteine de 70.2 25 0.00054 27.4 7.0 61 23-87 298-372 (379)
80 PRK04781 histidinol-phosphate 69.8 31 0.00067 27.1 7.5 57 12-84 304-360 (364)
81 COG1163 DRG Predicted GTPase [ 69.6 15 0.00033 30.4 5.8 67 9-78 140-208 (365)
82 PRK07683 aminotransferase A; V 68.6 36 0.00078 26.9 7.7 66 12-86 316-382 (387)
83 TIGR02618 tyr_phenol_ly tyrosi 68.0 29 0.00062 29.4 7.3 87 2-92 329-431 (450)
84 PRK08056 threonine-phosphate d 67.3 43 0.00093 26.1 7.8 63 11-86 292-354 (356)
85 PRK07682 hypothetical protein; 67.3 40 0.00088 26.3 7.6 66 12-86 309-375 (378)
86 PLN02855 Bifunctional selenocy 66.9 11 0.00023 30.2 4.4 72 13-90 346-421 (424)
87 TIGR00858 bioF 8-amino-7-oxono 66.8 17 0.00037 27.5 5.3 64 11-81 296-359 (360)
88 PRK08636 aspartate aminotransf 66.5 46 0.001 26.4 7.9 65 14-87 333-400 (403)
89 COG1168 MalY Bifunctional PLP- 66.3 12 0.00026 31.2 4.6 63 11-78 318-381 (388)
90 PRK04635 histidinol-phosphate 65.9 39 0.00085 26.2 7.3 54 13-82 297-350 (354)
91 PTZ00125 ornithine aminotransf 65.3 42 0.0009 26.4 7.4 61 14-87 334-395 (400)
92 PRK14809 histidinol-phosphate 65.3 37 0.00081 26.3 7.1 58 13-86 299-356 (357)
93 PRK08960 hypothetical protein; 65.2 41 0.00088 26.4 7.3 66 12-85 319-385 (387)
94 PRK06836 aspartate aminotransf 65.1 44 0.00096 26.4 7.6 62 12-86 329-390 (394)
95 COG4273 Uncharacterized conser 64.8 16 0.00035 26.3 4.4 56 23-88 75-130 (135)
96 PRK13237 tyrosine phenol-lyase 64.7 41 0.0009 28.6 7.6 88 1-92 335-438 (460)
97 PRK12566 glycine dehydrogenase 64.3 39 0.00086 31.3 7.8 69 13-91 808-880 (954)
98 PRK07337 aminotransferase; Val 64.3 51 0.0011 25.9 7.7 67 10-84 315-386 (388)
99 cd06453 SufS_like Cysteine des 64.2 11 0.00023 29.2 3.8 73 2-80 296-372 (373)
100 PRK09295 bifunctional cysteine 63.7 17 0.00037 28.8 5.0 78 2-85 322-402 (406)
101 PLN02607 1-aminocyclopropane-1 63.5 45 0.00098 27.4 7.5 70 13-91 365-441 (447)
102 cd06450 DOPA_deC_like DOPA dec 62.8 18 0.00039 27.5 4.8 72 2-83 269-344 (345)
103 TIGR01366 serC_3 phosphoserine 62.7 35 0.00075 27.1 6.5 60 17-86 300-359 (361)
104 PRK03317 histidinol-phosphate 62.2 64 0.0014 25.1 7.9 48 25-87 317-364 (368)
105 PRK05166 histidinol-phosphate 62.0 66 0.0014 25.2 7.9 58 13-85 312-369 (371)
106 PRK02936 argD acetylornithine 61.4 34 0.00073 26.7 6.2 58 12-85 320-377 (377)
107 PRK06959 putative threonine-ph 60.8 63 0.0014 25.2 7.6 57 14-88 278-334 (339)
108 PRK03244 argD acetylornithine 60.7 33 0.00072 27.0 6.1 62 12-88 334-395 (398)
109 PRK08175 aminotransferase; Val 60.4 70 0.0015 25.2 7.9 65 13-86 321-388 (395)
110 COG0156 BioF 7-keto-8-aminopel 59.5 29 0.00062 28.7 5.7 70 8-84 318-387 (388)
111 PRK06425 histidinol-phosphate 59.0 81 0.0018 24.3 7.9 60 12-85 272-331 (332)
112 PF01276 OKR_DC_1: Orn/Lys/Arg 59.0 9 0.00019 32.0 2.7 24 20-43 377-400 (417)
113 PRK06855 aminotransferase; Val 58.4 55 0.0012 26.5 7.1 51 27-86 378-428 (433)
114 PRK06348 aspartate aminotransf 58.2 65 0.0014 25.3 7.4 61 12-81 318-379 (384)
115 PRK07505 hypothetical protein; 57.8 31 0.00068 27.4 5.5 56 26-87 344-399 (402)
116 PRK00854 rocD ornithine--oxo-a 57.6 53 0.0011 25.9 6.8 63 11-86 338-400 (401)
117 PRK05367 glycine dehydrogenase 56.8 60 0.0013 29.9 7.7 73 9-91 803-879 (954)
118 PLN02414 glycine dehydrogenase 56.4 50 0.0011 30.7 7.1 70 12-91 838-911 (993)
119 TIGR03588 PseC UDP-4-keto-6-de 55.8 45 0.00097 26.2 6.0 69 13-85 295-380 (380)
120 COG0520 csdA Selenocysteine ly 54.1 37 0.00079 27.9 5.5 68 15-86 334-404 (405)
121 PRK10637 cysG siroheme synthas 54.1 19 0.00042 29.8 3.9 74 11-85 72-147 (457)
122 PRK04260 acetylornithine amino 53.5 51 0.0011 25.8 6.0 57 12-84 318-374 (375)
123 PRK07550 hypothetical protein; 53.4 73 0.0016 24.9 6.9 65 11-83 318-383 (386)
124 TIGR00707 argD acetylornithine 53.3 48 0.0011 25.6 5.8 56 13-84 323-378 (379)
125 PRK01688 histidinol-phosphate 52.8 78 0.0017 24.6 6.9 56 10-81 294-350 (351)
126 PRK08912 hypothetical protein; 52.6 75 0.0016 24.9 6.9 69 11-86 314-385 (387)
127 PRK14808 histidinol-phosphate 52.5 91 0.002 24.2 7.3 53 11-82 280-332 (335)
128 CHL00137 rps13 ribosomal prote 52.3 34 0.00074 23.8 4.4 47 15-83 15-62 (122)
129 COG1827 Predicted small molecu 52.3 18 0.00038 26.9 3.0 38 2-40 130-168 (168)
130 PRK07590 L,L-diaminopimelate a 51.8 91 0.002 24.8 7.3 66 9-84 342-408 (409)
131 PRK06939 2-amino-3-ketobutyrat 51.3 55 0.0012 25.3 5.9 57 24-86 336-392 (397)
132 cd00613 GDC-P Glycine cleavage 51.1 29 0.00064 27.0 4.3 61 10-80 336-397 (398)
133 PRK07309 aromatic amino acid a 50.9 1.2E+02 0.0026 23.9 7.9 63 14-86 322-387 (391)
134 PRK09265 aminotransferase AlaT 50.7 98 0.0021 24.5 7.3 66 12-86 331-400 (404)
135 PRK09147 succinyldiaminopimela 50.6 1.2E+02 0.0025 24.0 7.7 64 13-85 327-394 (396)
136 TIGR03542 DAPAT_plant LL-diami 50.3 94 0.002 24.6 7.1 67 8-84 334-401 (402)
137 PRK04073 rocD ornithine--oxo-a 50.2 81 0.0018 25.0 6.8 57 13-85 339-395 (396)
138 PRK05957 aspartate aminotransf 50.2 92 0.002 24.6 7.0 65 13-86 319-384 (389)
139 PLN02397 aspartate transaminas 49.7 44 0.00095 27.0 5.2 52 14-88 371-422 (423)
140 PRK06173 adenosylmethionine--8 49.3 97 0.0021 25.4 7.2 62 11-87 364-425 (429)
141 COG0079 HisC Histidinol-phosph 49.3 1.3E+02 0.0029 24.2 7.9 64 10-86 290-353 (356)
142 PLN02483 serine palmitoyltrans 48.8 80 0.0017 26.3 6.7 77 2-86 389-465 (489)
143 COG1902 NemA NADH:flavin oxido 48.2 34 0.00074 28.0 4.4 48 44-91 113-161 (363)
144 PRK07865 N-succinyldiaminopime 47.5 93 0.002 24.1 6.6 57 13-81 306-362 (364)
145 cd00610 OAT_like Acetyl ornith 47.1 63 0.0014 25.2 5.6 61 12-85 346-413 (413)
146 PRK11658 UDP-4-amino-4-deoxy-L 47.1 34 0.00073 27.2 4.1 73 13-85 291-377 (379)
147 PRK15029 arginine decarboxylas 46.8 29 0.00062 31.2 4.0 56 15-83 536-600 (755)
148 PRK15400 lysine decarboxylase 46.2 41 0.00089 30.1 4.8 49 22-83 507-555 (714)
149 COG2008 GLY1 Threonine aldolas 46.0 38 0.00083 27.8 4.3 68 2-84 273-340 (342)
150 PRK02627 acetylornithine amino 45.6 1.2E+02 0.0025 23.7 6.9 58 13-86 336-393 (396)
151 PLN02450 1-aminocyclopropane-1 45.4 1.3E+02 0.0028 24.8 7.5 63 14-86 359-429 (468)
152 PRK15399 lysine decarboxylase 44.6 45 0.00098 29.9 4.8 50 21-83 506-555 (713)
153 COG1831 Predicted metal-depend 44.3 86 0.0019 25.2 5.9 57 10-86 8-68 (285)
154 PRK09221 beta alanine--pyruvat 44.0 59 0.0013 26.8 5.2 47 26-86 396-442 (445)
155 PLN00143 tyrosine/nicotianamin 43.6 1.5E+02 0.0032 23.7 7.3 64 12-86 335-403 (409)
156 TIGR03576 pyridox_MJ0158 pyrid 43.5 79 0.0017 25.0 5.7 60 14-83 282-343 (346)
157 PRK11706 TDP-4-oxo-6-deoxy-D-g 43.1 1.1E+02 0.0023 24.2 6.4 74 11-85 288-374 (375)
158 TIGR03537 DapC succinyldiamino 42.8 1.2E+02 0.0027 23.3 6.6 60 12-81 288-347 (350)
159 PRK07568 aspartate aminotransf 42.3 1.6E+02 0.0036 22.9 7.5 68 12-87 319-392 (397)
160 PF00941 FAD_binding_5: FAD bi 41.6 48 0.001 23.7 3.9 45 2-69 23-77 (171)
161 PRK08637 hypothetical protein; 41.2 56 0.0012 25.8 4.5 57 14-86 328-385 (388)
162 PRK09257 aromatic amino acid a 41.0 51 0.0011 26.0 4.3 44 24-85 353-396 (396)
163 PRK10605 N-ethylmaleimide redu 41.0 47 0.001 26.8 4.1 27 65-91 145-171 (362)
164 PRK09082 methionine aminotrans 40.4 1.5E+02 0.0033 23.2 6.9 63 12-81 319-383 (386)
165 PRK07681 aspartate aminotransf 39.5 1.6E+02 0.0034 23.3 6.8 63 11-83 321-384 (399)
166 TIGR03020 EpsA transcriptional 39.0 41 0.0009 25.9 3.4 35 70-104 2-38 (247)
167 PRK08363 alanine aminotransfer 38.7 1.9E+02 0.0041 22.8 7.2 67 11-86 325-393 (398)
168 PRK13360 omega amino acid--pyr 38.4 90 0.0019 25.7 5.5 47 26-86 393-439 (442)
169 PRK08742 adenosylmethionine--8 38.2 93 0.002 26.0 5.6 50 27-90 421-470 (472)
170 PTZ00376 aspartate aminotransf 37.9 95 0.0021 24.7 5.4 44 25-86 359-402 (404)
171 TIGR01822 2am3keto_CoA 2-amino 36.2 2E+02 0.0044 22.3 7.0 56 25-86 333-388 (393)
172 KOG1034 Transcriptional repres 36.2 59 0.0013 27.1 4.0 42 2-48 193-235 (385)
173 PF08859 DGC: DGC domain; Int 36.1 93 0.002 21.0 4.4 56 14-83 54-109 (110)
174 TIGR03538 DapC_gpp succinyldia 36.0 1.8E+02 0.0039 22.8 6.7 62 12-83 325-391 (393)
175 PRK05179 rpsM 30S ribosomal pr 35.3 97 0.0021 21.5 4.5 48 14-83 14-62 (122)
176 PRK07986 adenosylmethionine--8 35.2 1.9E+02 0.0041 23.8 6.9 58 14-86 365-422 (428)
177 COG3977 Alanine-alpha-ketoisov 35.1 42 0.0009 28.0 2.9 85 10-103 238-332 (417)
178 TIGR01825 gly_Cac_T_rel pyrido 34.8 2.1E+02 0.0046 22.0 7.0 67 13-86 314-380 (385)
179 PRK03080 phosphoserine aminotr 34.8 1.5E+02 0.0033 23.4 6.1 66 14-89 308-375 (378)
180 TIGR00508 bioA adenosylmethion 34.5 2E+02 0.0043 23.5 6.9 59 13-86 367-425 (427)
181 TIGR01788 Glu-decarb-GAD gluta 34.1 1.5E+02 0.0032 24.5 6.1 65 2-68 347-414 (431)
182 TIGR01264 tyr_amTase_E tyrosin 33.8 2.4E+02 0.0051 22.2 7.6 64 12-86 330-398 (401)
183 PRK06107 aspartate aminotransf 33.5 2.4E+02 0.0052 22.3 7.3 51 25-86 348-399 (402)
184 TIGR01470 cysG_Nterm siroheme 33.1 64 0.0014 23.9 3.5 59 27-85 84-144 (205)
185 PRK13247 dihydrobiliverdin:fer 33.1 2.1E+02 0.0046 22.2 6.5 25 2-26 82-107 (238)
186 cd07382 MPP_DR1281 Deinococcus 32.7 68 0.0015 24.8 3.7 57 1-68 57-118 (255)
187 PRK14810 formamidopyrimidine-D 32.7 1.2E+02 0.0026 23.6 5.1 30 62-91 186-215 (272)
188 PRK09792 4-aminobutyrate trans 32.5 1.6E+02 0.0036 23.8 6.1 50 26-86 371-420 (421)
189 TIGR03631 bact_S13 30S ribosom 32.3 98 0.0021 21.2 4.1 51 11-83 9-60 (113)
190 PRK08117 4-aminobutyrate amino 32.3 2.1E+02 0.0044 23.2 6.6 50 27-87 380-429 (433)
191 PF00155 Aminotran_1_2: Aminot 32.1 55 0.0012 25.0 3.1 58 11-80 304-362 (363)
192 PRK10449 heat-inducible protei 31.9 76 0.0016 22.2 3.6 38 54-91 78-115 (140)
193 cd02930 DCR_FMN 2,4-dienoyl-Co 31.0 69 0.0015 25.5 3.6 28 64-91 122-149 (353)
194 PF11823 DUF3343: Protein of u 30.8 77 0.0017 19.4 3.1 48 25-82 13-60 (73)
195 PTZ00433 tyrosine aminotransfe 30.8 2.7E+02 0.0058 22.1 7.0 65 12-87 339-408 (412)
196 PRK13248 phycoerythrobilin:fer 30.7 1.9E+02 0.004 22.8 5.8 45 2-47 101-148 (253)
197 PRK08088 4-aminobutyrate amino 30.7 1.5E+02 0.0033 23.9 5.6 51 26-87 373-423 (425)
198 PRK08068 transaminase; Reviewe 30.5 2.5E+02 0.0054 22.0 6.7 47 12-62 323-370 (389)
199 COG0174 GlnA Glutamine synthet 29.8 68 0.0015 27.1 3.5 64 27-104 169-232 (443)
200 PRK09971 xanthine dehydrogenas 29.8 1.7E+02 0.0037 22.7 5.6 10 3-12 26-35 (291)
201 COG0099 RpsM Ribosomal protein 29.4 95 0.0021 22.0 3.7 47 15-83 15-62 (121)
202 PRK06290 aspartate aminotransf 29.3 1.8E+02 0.0038 23.5 5.7 65 13-86 334-404 (410)
203 COG4747 ACT domain-containing 29.2 39 0.00084 24.3 1.7 29 16-44 36-70 (142)
204 PLN00144 acetylornithine trans 29.0 2.4E+02 0.0053 22.5 6.4 59 13-86 321-379 (382)
205 PRK05289 UDP-N-acetylglucosami 28.8 75 0.0016 24.3 3.4 29 59-87 194-222 (262)
206 PRK12414 putative aminotransfe 28.8 2.8E+02 0.0061 21.7 6.7 61 14-81 319-381 (384)
207 TIGR02379 ECA_wecE TDP-4-keto- 28.7 3E+02 0.0066 21.9 7.0 68 13-85 291-375 (376)
208 KOG0452 RNA-binding translatio 28.6 26 0.00057 31.4 0.9 32 8-39 205-239 (892)
209 PRK09264 diaminobutyrate--2-ox 28.2 2.2E+02 0.0047 23.1 6.1 64 13-88 354-417 (425)
210 PRK02816 phycocyanobilin:ferre 28.1 2.9E+02 0.0063 21.5 7.1 83 2-91 99-184 (243)
211 COG1448 TyrB Aspartate/tyrosin 28.0 1.1E+02 0.0024 25.7 4.4 46 22-85 351-396 (396)
212 KOG2040 Glycine dehydrogenase 28.0 2.3E+02 0.0049 26.2 6.4 78 3-93 837-921 (1001)
213 cd01896 DRG The developmentall 27.8 71 0.0015 23.8 3.0 59 16-78 84-145 (233)
214 cd02932 OYE_YqiM_FMN Old yello 27.7 79 0.0017 24.9 3.4 39 53-91 128-166 (336)
215 TIGR00496 frr ribosome recycli 27.5 1.1E+02 0.0023 22.5 3.9 48 10-66 51-98 (176)
216 KOG1481 Cysteine synthase [Ami 27.2 85 0.0018 25.9 3.5 81 8-102 122-217 (391)
217 PRK06062 hypothetical protein; 27.2 2.1E+02 0.0045 23.6 5.8 48 27-88 399-446 (451)
218 PRK14012 cysteine desulfurase; 27.0 1.6E+02 0.0034 23.3 5.0 62 25-90 309-382 (404)
219 PLN02624 ornithine-delta-amino 26.7 2.6E+02 0.0056 23.2 6.4 49 26-87 396-444 (474)
220 PF00034 Cytochrom_C: Cytochro 26.7 76 0.0016 18.5 2.5 16 68-83 74-89 (91)
221 PRK04612 argD acetylornithine 26.6 2.8E+02 0.006 22.5 6.4 49 26-87 355-403 (408)
222 cd02803 OYE_like_FMN_family Ol 26.4 92 0.002 24.0 3.5 39 53-91 115-153 (327)
223 PF03207 OspD: Borrelia outer 26.2 97 0.0021 23.6 3.4 31 65-95 221-251 (254)
224 PF00266 Aminotran_5: Aminotra 26.2 2E+02 0.0044 22.2 5.4 61 10-76 307-370 (371)
225 PRK04053 rps13p 30S ribosomal 26.1 1.5E+02 0.0033 21.4 4.3 48 14-83 22-70 (149)
226 PRK05630 adenosylmethionine--8 25.9 3.3E+02 0.0071 22.2 6.8 48 25-86 372-419 (422)
227 PF00416 Ribosomal_S13: Riboso 25.6 1.6E+02 0.0035 19.6 4.2 41 21-83 20-60 (107)
228 COG1104 NifS Cysteine sulfinat 25.6 2.4E+02 0.0051 23.6 5.9 67 22-92 302-382 (386)
229 PRK09276 LL-diaminopimelate am 25.4 3.3E+02 0.0071 21.2 7.3 60 12-81 322-382 (385)
230 PRK12381 bifunctional succinyl 25.3 2.7E+02 0.0058 22.2 6.1 48 26-86 351-398 (406)
231 PRK09248 putative hydrolase; V 25.1 60 0.0013 24.2 2.2 29 6-39 188-216 (246)
232 COG4566 TtrR Response regulato 25.1 1E+02 0.0022 23.6 3.4 35 13-47 50-84 (202)
233 PLN02760 4-aminobutyrate:pyruv 25.1 2.5E+02 0.0053 23.7 6.0 49 26-88 444-492 (504)
234 TIGR03540 DapC_direct LL-diami 24.9 3.3E+02 0.0072 21.1 7.7 48 11-62 319-367 (383)
235 COG1553 DsrE Uncharacterized c 24.8 1.2E+02 0.0026 21.6 3.5 17 57-73 75-91 (126)
236 PF11798 IMS_HHH: IMS family H 24.7 54 0.0012 17.4 1.4 15 23-38 18-32 (32)
237 TIGR02006 IscS cysteine desulf 24.7 3E+02 0.0064 21.8 6.2 62 23-88 305-378 (402)
238 PF13720 Acetyltransf_11: Udp 24.7 68 0.0015 20.6 2.1 27 59-85 18-44 (83)
239 TIGR03801 asp_4_decarbox aspar 24.5 2.8E+02 0.0061 23.8 6.3 51 26-86 464-515 (521)
240 PRK08354 putative aminotransfe 24.4 3.2E+02 0.0069 20.7 7.5 56 12-83 253-308 (311)
241 PF01904 DUF72: Protein of unk 24.3 45 0.00098 25.0 1.4 73 14-86 119-202 (230)
242 TIGR01634 tail_P2_I phage tail 24.0 1.6E+02 0.0034 21.0 4.1 61 20-84 73-135 (139)
243 COG1648 CysG Siroheme synthase 23.9 1.5E+02 0.0033 22.3 4.2 70 12-85 73-147 (210)
244 TIGR03246 arg_catab_astC succi 23.8 2.4E+02 0.0051 22.5 5.5 49 26-87 347-395 (397)
245 PF08085 Entericidin: Enterici 23.8 58 0.0013 16.2 1.3 18 65-83 2-19 (21)
246 PRK13355 bifunctional HTH-doma 23.6 4.3E+02 0.0093 21.9 7.4 64 14-86 446-513 (517)
247 PF04343 DUF488: Protein of un 23.6 1.1E+02 0.0025 20.4 3.2 26 14-39 15-46 (122)
248 KOG2783 Phenylalanyl-tRNA synt 23.6 74 0.0016 27.0 2.6 36 67-102 360-400 (436)
249 cd00520 RRF Ribosome recycling 23.4 1.5E+02 0.0032 21.7 4.0 48 10-66 56-103 (179)
250 PRK07480 putative aminotransfe 23.4 2.8E+02 0.0062 22.9 6.0 48 27-88 402-449 (456)
251 PF00690 Cation_ATPase_N: Cati 23.3 63 0.0014 19.4 1.7 25 20-48 17-41 (69)
252 KOG1368 Threonine aldolase [Am 23.3 1.2E+02 0.0026 25.2 3.6 68 3-83 297-364 (384)
253 PRK09458 pspB phage shock prot 23.3 1.7E+02 0.0037 19.0 3.7 22 65-86 32-53 (75)
254 PF14162 YozD: YozD-like prote 23.2 1.5E+02 0.0032 18.2 3.2 25 62-86 19-45 (57)
255 COG4009 Uncharacterized protei 23.1 1.1E+02 0.0024 20.4 2.8 34 8-44 46-80 (88)
256 PRK07366 succinyldiaminopimela 22.6 3.8E+02 0.0082 20.9 6.4 64 11-83 321-386 (388)
257 PRK10081 entericidin B membran 22.4 95 0.0021 18.5 2.2 24 64-88 23-46 (48)
258 PF14258 DUF4350: Domain of un 22.3 1.8E+02 0.0039 17.2 3.6 54 26-83 7-62 (70)
259 cd02933 OYE_like_FMN Old yello 22.0 1.7E+02 0.0037 23.3 4.3 27 65-91 138-164 (338)
260 COG4912 Predicted DNA alkylati 21.9 79 0.0017 24.5 2.3 27 57-83 30-56 (222)
261 PF12307 DUF3631: Protein of u 21.8 1.1E+02 0.0023 23.0 3.0 45 16-76 134-179 (184)
262 PRK10076 pyruvate formate lyas 21.8 53 0.0011 24.7 1.3 27 57-83 130-156 (213)
263 PRK06918 4-aminobutyrate amino 21.6 3.7E+02 0.0081 21.9 6.3 52 26-88 393-444 (451)
264 PF03793 PASTA: PASTA domain; 21.6 88 0.0019 18.1 2.1 21 23-43 8-28 (63)
265 PF02696 UPF0061: Uncharacteri 21.5 1E+02 0.0022 26.3 3.1 56 28-83 139-210 (487)
266 cd04734 OYE_like_3_FMN Old yel 21.3 1.3E+02 0.0028 24.0 3.5 39 53-91 115-153 (343)
267 cd03862 Peptidase_M14-like_7 A 21.3 1.8E+02 0.004 22.7 4.3 62 23-84 77-144 (273)
268 cd02929 TMADH_HD_FMN Trimethyl 21.2 1.3E+02 0.0029 24.3 3.6 40 52-91 120-162 (370)
269 PRK05562 precorrin-2 dehydroge 21.1 1.6E+02 0.0034 22.6 3.8 72 13-85 87-160 (223)
270 PF00400 WD40: WD domain, G-be 21.0 82 0.0018 15.9 1.7 16 3-18 24-39 (39)
271 PRK07483 hypothetical protein; 21.0 4.4E+02 0.0096 21.6 6.7 57 27-89 383-439 (443)
272 cd04734 OYE_like_3_FMN Old yel 20.9 1E+02 0.0022 24.6 2.8 30 55-84 211-240 (343)
273 PF07131 DUF1382: Protein of u 20.8 2.3E+02 0.005 17.7 3.9 47 25-88 5-51 (61)
274 PRK01103 formamidopyrimidine/5 20.7 2.8E+02 0.0061 21.4 5.2 30 62-91 187-216 (274)
275 PF11419 DUF3194: Protein of u 20.6 1.4E+02 0.003 20.0 2.9 24 64-87 1-24 (87)
276 CHL00133 psbV photosystem II c 20.6 68 0.0015 23.6 1.6 27 67-96 131-157 (163)
277 PRK03573 transcriptional regul 20.5 1.7E+02 0.0037 19.7 3.6 66 27-93 64-142 (144)
278 COG2863 Cytochrome c553 [Energ 20.5 93 0.002 21.9 2.2 22 62-83 78-99 (121)
279 COG4840 Uncharacterized protei 20.4 1.1E+02 0.0024 19.6 2.4 18 66-83 51-68 (71)
280 TIGR02129 hisA_euk phosphoribo 20.4 3.2E+02 0.0069 21.4 5.4 77 14-92 55-137 (253)
281 PLN02414 glycine dehydrogenase 20.3 2.5E+02 0.0055 26.2 5.5 64 2-83 402-465 (993)
282 PRK09148 aminotransferase; Val 20.2 4.5E+02 0.0097 20.9 8.4 70 12-90 321-393 (405)
283 smart00320 WD40 WD40 repeats. 20.2 74 0.0016 14.0 1.3 13 5-17 27-39 (40)
284 PRK07481 hypothetical protein; 20.1 2.9E+02 0.0063 22.7 5.4 46 27-86 399-444 (449)
285 PRK13619 psbV cytochrome c-550 20.1 80 0.0017 23.4 1.9 17 67-83 130-146 (160)
286 PRK13523 NADPH dehydrogenase N 20.1 1.3E+02 0.0029 24.0 3.4 28 64-91 127-154 (337)
287 TIGR02407 ectoine_ectB diamino 20.0 3.2E+02 0.007 22.0 5.6 61 14-86 351-411 (412)
288 PF08921 DUF1904: Domain of un 20.0 1.8E+02 0.0038 19.8 3.5 30 64-93 4-33 (108)
No 1
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-35 Score=235.49 Aligned_cols=97 Identities=69% Similarity=1.088 Sum_probs=94.7
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
+||++++||||||||||||++.|++|..+|++||.++|.+|||++|+|++++.|+|||||||+||+|||.|+||++|+++
T Consensus 340 ~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~f 419 (477)
T KOG2467|consen 340 RGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADF 419 (477)
T ss_pred cCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccC
Q 034072 81 FDAAVKLTVKIKSETQG 97 (104)
Q Consensus 81 i~~~l~~~~~~~~~~~~ 97 (104)
|.++++++.++|.+.++
T Consensus 420 i~~av~i~~~~~~~~~~ 436 (477)
T KOG2467|consen 420 IDRAVKIALEIQKEAGG 436 (477)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999999988854
No 2
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=234.13 Aligned_cols=89 Identities=45% Similarity=0.756 Sum_probs=85.7
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCC-CCCCCCCeeeEcchhHhhcCCCHHHHHHHHH
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d-~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~ 79 (104)
+||+|++|||||||||||+++.+++|+++++.|+++||++|||.|||| .++++||||||||||+|||||+|+||++||+
T Consensus 303 ~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~ 382 (413)
T COG0112 303 RGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIAD 382 (413)
T ss_pred cCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHH
Confidence 699999999999999999998899999999999999999999999999 5899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 034072 80 FFDAAVKLTV 89 (104)
Q Consensus 80 ~i~~~l~~~~ 89 (104)
||.++|....
T Consensus 383 ~I~~vl~~~~ 392 (413)
T COG0112 383 LIADVLDGLK 392 (413)
T ss_pred HHHHHHhccc
Confidence 9999998833
No 3
>PLN02271 serine hydroxymethyltransferase
Probab=100.00 E-value=2.5e-33 Score=235.61 Aligned_cols=95 Identities=43% Similarity=0.729 Sum_probs=92.0
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
+||+|++|||||||||||++++|++|+.++++||++||++|||.||+|++++.+|||||||++||+|||+|+||++||++
T Consensus 454 ~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~ 533 (586)
T PLN02271 454 RKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADF 533 (586)
T ss_pred CCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 034072 81 FDAAVKLTVKIKSET 95 (104)
Q Consensus 81 i~~~l~~~~~~~~~~ 95 (104)
|.++++++.++|+|.
T Consensus 534 i~~~~~~~~~~~~~~ 548 (586)
T PLN02271 534 LLRAAQIASAVQREH 548 (586)
T ss_pred HHHHHhhhhhhhhhc
Confidence 999999888887766
No 4
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.96 E-value=2.2e-30 Score=210.43 Aligned_cols=81 Identities=54% Similarity=0.918 Sum_probs=70.5
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
+||+|++|||||||||||++++|++|++|+++||++||+||||.+|+|++++.+|||||||+++|+|||+|+||++||+|
T Consensus 319 ~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 319 RGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp TT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred CCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H
Q 034072 81 F 81 (104)
Q Consensus 81 i 81 (104)
|
T Consensus 399 I 399 (399)
T PF00464_consen 399 I 399 (399)
T ss_dssp H
T ss_pred C
Confidence 7
No 5
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.91 E-value=2.9e-24 Score=176.82 Aligned_cols=95 Identities=62% Similarity=1.017 Sum_probs=89.6
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
.|+++++++||||+++||+++.|+++.++++.|+++||.+|||.+|+|.+++.++|||+||+++|+||++++||++||++
T Consensus 333 ~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~ 412 (475)
T PLN03226 333 KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEF 412 (475)
T ss_pred CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 034072 81 FDAAVKLTVKIKSET 95 (104)
Q Consensus 81 i~~~l~~~~~~~~~~ 95 (104)
|.++|+...+++++.
T Consensus 413 i~~~~~~~~~~~~~~ 427 (475)
T PLN03226 413 LHRAVTIALKIQKEH 427 (475)
T ss_pred HHHHHHHhhhhhhhc
Confidence 999999776665554
No 6
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.83 E-value=8e-21 Score=158.03 Aligned_cols=89 Identities=38% Similarity=0.634 Sum_probs=83.5
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHH
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~ 79 (104)
+||++++||||||+++||+.+.+++++.+++.|+++||.||++.+|+++ +++.+|+||||++++|+||++++||+++++
T Consensus 358 ~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad 437 (493)
T PRK13580 358 RGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAE 437 (493)
T ss_pred cCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHH
Confidence 5899999999999999999999989999999999999999999999995 677899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 034072 80 FFDAAVKLTV 89 (104)
Q Consensus 80 ~i~~~l~~~~ 89 (104)
+|.+++....
T Consensus 438 ~l~~~l~~~~ 447 (493)
T PRK13580 438 LIVKVLSNTT 447 (493)
T ss_pred HHHHHHHhhh
Confidence 9999997643
No 7
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.66 E-value=8.1e-16 Score=124.88 Aligned_cols=102 Identities=56% Similarity=0.886 Sum_probs=90.4
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
.|+++++++|++|+++|++...++++.++..+|+++||.++++.+|+++.+..+++||+|+..+|+||++++||++++++
T Consensus 322 ~g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~ 401 (452)
T PTZ00094 322 RGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADF 401 (452)
T ss_pred CCcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHH
Confidence 37889888889999999998889999999999999999999999999987777899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccccc
Q 034072 81 FDAAVKLTVKIKSETQGSYQCF 102 (104)
Q Consensus 81 i~~~l~~~~~~~~~~~~~~~~~ 102 (104)
|.+++.....+++++..++-+|
T Consensus 402 l~~~~~~~~~~~~~~~~~~~~~ 423 (452)
T PTZ00094 402 LDRAVKLAQEIQKQVGKKLVDF 423 (452)
T ss_pred HHHHHHHHhhhhhhcccchhhh
Confidence 9999998777666664444443
No 8
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.56 E-value=2.1e-14 Score=115.82 Aligned_cols=86 Identities=52% Similarity=0.857 Sum_probs=79.9
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCC-CCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d-~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
|++++.++||+|+++|++...+.+...+.++|+++||.++++.+|+| ..|..+++||+|+.++|+||++++|++++++.
T Consensus 306 G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~ 385 (416)
T PRK13034 306 GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANW 385 (416)
T ss_pred CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHH
Confidence 78887667999999999998899999999999999999999999998 57777899999999999999999999999999
Q ss_pred HHHHHHH
Q 034072 81 FDAAVKL 87 (104)
Q Consensus 81 i~~~l~~ 87 (104)
|.+++..
T Consensus 386 l~~~~~~ 392 (416)
T PRK13034 386 ILDVLDD 392 (416)
T ss_pred HHHHHhc
Confidence 9999874
No 9
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.06 E-value=2e-09 Score=85.55 Aligned_cols=86 Identities=48% Similarity=0.816 Sum_probs=74.9
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCC-CCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d-~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
|+++..+++++|++++++.+.+++..++.+.|++.||.++....|.+ .++..+.++|+|+.++|++|++++|++.+++.
T Consensus 303 g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~ 382 (416)
T PRK00011 303 GFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAEL 382 (416)
T ss_pred CCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHH
Confidence 66766566889999999877777889999999999999998877876 34555678999999999999999999999999
Q ss_pred HHHHHHH
Q 034072 81 FDAAVKL 87 (104)
Q Consensus 81 i~~~l~~ 87 (104)
|.+++..
T Consensus 383 l~~~~~~ 389 (416)
T PRK00011 383 IADVLDN 389 (416)
T ss_pred HHHHHhc
Confidence 9999887
No 10
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.95 E-value=7.5e-09 Score=81.45 Aligned_cols=88 Identities=52% Similarity=0.839 Sum_probs=75.6
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCC-CCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~-~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
|++++.....+|++|+++.+.+.++.++.+.|++.||.++....|+... +..+.++|||+..+|++|++++||+++++.
T Consensus 299 g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~ 378 (402)
T cd00378 299 GFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADF 378 (402)
T ss_pred CCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHH
Confidence 6677655567999999998777788999999999999999977888743 334578999999999999999999999999
Q ss_pred HHHHHHHHH
Q 034072 81 FDAAVKLTV 89 (104)
Q Consensus 81 i~~~l~~~~ 89 (104)
|.++++...
T Consensus 379 l~~~~~~~~ 387 (402)
T cd00378 379 IARALKDAE 387 (402)
T ss_pred HHHHHhccc
Confidence 999998766
No 11
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.15 E-value=8.3e-06 Score=67.16 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=65.5
Q ss_pred CCeeeeCCCCCceeeEeccCCC-------CCHHH-HHHHHhhcCceeccCC---CCCCCCCC-----CCCeeeEcchhHh
Q 034072 2 GYELVSGGTENHLVLVNLKNKG-------IDGSR-VEKVLEAVHIAANKNT---VPGDVSAM-----VPGGIRMGTPALT 65 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~g-------i~g~~-a~~~Le~~gI~vnkn~---lP~d~~~~-----~~sglRlGT~a~T 65 (104)
|++++. .+-.|.+++|++.+. .++.+ +.++++++||.+.... .|.|+..- ...++||++|
T Consensus 311 G~~v~~-P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p--- 386 (431)
T cd00617 311 GVPIVE-PAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP--- 386 (431)
T ss_pred CCCccC-CCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc---
Confidence 667664 244599999987542 12443 5589999999976543 36664211 2479999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 034072 66 SRGFVEEDFAKVAYFFDAAVKLTVKIK 92 (104)
Q Consensus 66 ~RG~~e~dm~~Ia~~i~~~l~~~~~~~ 92 (104)
||+++.++|+.||+.|.+++++...++
T Consensus 387 rr~~t~~~~~~~~~~~~~~~~~~~~~~ 413 (431)
T cd00617 387 RRVYTQDHMDYVAAAVIALYERREDIR 413 (431)
T ss_pred ccccCHHHHHHHHHHHHHHHhhHhhCC
Confidence 999999999999999999999887773
No 12
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.04 E-value=3e-05 Score=64.06 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCCeeeeCCCCCceeeEeccCC-------CC-CHHHHHHHHhhcCceeccCC---CCCCCCC-----CCCCeeeEcchhH
Q 034072 1 MGYELVSGGTENHLVLVNLKNK-------GI-DGSRVEKVLEAVHIAANKNT---VPGDVSA-----MVPGGIRMGTPAL 64 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~-------gi-~g~~a~~~Le~~gI~vnkn~---lP~d~~~-----~~~sglRlGT~a~ 64 (104)
.|++++. .+-.|.+++|++.+ +. +..-+..+|+++||.+.... .|.|+.. .....+||+++
T Consensus 335 ~G~~~~~-p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~-- 411 (460)
T PRK13238 335 AGVPIQT-PAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIP-- 411 (460)
T ss_pred CCCCeEc-cCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecc--
Confidence 3788874 22239999999764 22 46688999999999997754 6665421 13578999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 65 TSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 65 T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
+|+++.++|+.+|+.|.++.+....+
T Consensus 412 -rr~~~~~~~~~~~~~l~~~~~~~~~~ 437 (460)
T PRK13238 412 -RRVYTQSHMDYVAEALKAVKENRESI 437 (460)
T ss_pred -cccCCHHHHHHHHHHHHHHHHhHhhc
Confidence 99999999999999999988766665
No 13
>PRK06225 aspartate aminotransferase; Provisional
Probab=93.12 E-value=0.96 Score=35.51 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
...-++|+++.+.+++..+..+.|.+.||.+-... +.......+.+|++.. ..++||++..+.|.+++.
T Consensus 307 ~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~--~~~~~~~~~~iR~s~~------~~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 307 SHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGT--YTSKRFGDRYIRVSFS------IPREQVEVFCEEFPDVVE 375 (380)
T ss_pred CCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCc--ccCcCCCCceEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence 34457899987777899999999999999876432 1111122457999942 368999999999988876
No 14
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=92.92 E-value=0.27 Score=38.69 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=51.2
Q ss_pred CCeeeeCCC---CCceeeEeccCCCCCHHHHHHHHhhcCceeccCC---CCCCCCCCCCCeeeEcchhHhhcCCCHHHHH
Q 034072 2 GYELVSGGT---ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFA 75 (104)
Q Consensus 2 G~~vv~ggT---d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~---lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~ 75 (104)
|++++.... ..+++.+.+. ++++.++.+.|++.||.+..-. -|.-...-.++.+||+....+ +++|++
T Consensus 316 g~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~----t~~di~ 389 (403)
T TIGR01979 316 GLRIYGPRDAEDRGGIISFNVE--GVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYN----TEEDID 389 (403)
T ss_pred CEEEeCCCCccccCceEEEEeC--CcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCC----CHHHHH
Confidence 455654221 2677777764 4678899999999999987421 111000001357999877665 669999
Q ss_pred HHHHHHHHHHH
Q 034072 76 KVAYFFDAAVK 86 (104)
Q Consensus 76 ~Ia~~i~~~l~ 86 (104)
.+.+.|.+++.
T Consensus 390 ~l~~~l~~~~~ 400 (403)
T TIGR01979 390 ALVEALKKVRK 400 (403)
T ss_pred HHHHHHHHHHH
Confidence 99998876554
No 15
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=91.82 E-value=0.71 Score=35.26 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=52.1
Q ss_pred CCeeeeCC----CCCceeeEeccCC-CCCHHHHHHHHhhcCceeccCCCCCCCCC------------C------CCCeee
Q 034072 2 GYELVSGG----TENHLVLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSA------------M------VPGGIR 58 (104)
Q Consensus 2 G~~vv~gg----Td~Hlvlvdl~~~-gi~g~~a~~~Le~~gI~vnkn~lP~d~~~------------~------~~sglR 58 (104)
|++++... ...+++.+.+... +.+..++.+.|++.||.++....|....+ + ..+.||
T Consensus 253 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 332 (352)
T cd00616 253 GIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLS 332 (352)
T ss_pred CccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEE
Confidence 45555432 2346777776432 67999999999999999887766653211 0 025788
Q ss_pred EcchhHhhcCCCHHHHHHHHHHH
Q 034072 59 MGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 59 lGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|.... .++++||+.|++.|
T Consensus 333 l~~~~----~~t~~di~~i~~~l 351 (352)
T cd00616 333 LPLHP----SLTEEEIDRVIEAL 351 (352)
T ss_pred ccCCC----CCCHHHHHHHHHHh
Confidence 88554 68899999998875
No 16
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=91.27 E-value=1.5 Score=33.82 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=44.8
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
....+|+++ .+++..+..+.|.+.||.+..... +. ......|||+.. .++|++++.+.|.++|
T Consensus 298 ~~~~i~~~~--~~~~~~~~~~~l~~~gv~v~~~~~-f~--~~~~~~lRis~~-------~~~~~~~l~~~L~~il 360 (361)
T PRK00950 298 EANFVLVDV--TPMTAKEFCEELLKRGVIVRDCTS-FR--GLGDYYIRVSIG-------TFEENERFLEILKEIV 360 (361)
T ss_pred cceEEEEEC--CCCCHHHHHHHHHHCCEEEeeCCc-cC--CCCCCeEEEECC-------CHHHHHHHHHHHHHHh
Confidence 445788888 356888999999999999875321 11 112357999965 6678988888887765
No 17
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=91.08 E-value=1.7 Score=33.74 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=45.8
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+..++|+++ +.+.+..+..+.|.+.||.+....-++ .+..|||+.. ..+|++.+.+.+.+++.
T Consensus 303 ~g~~~~i~~-~~~~~~~~~~~~L~~~gI~v~~~~~~~-----~~~~iRis~~-------~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 303 VGNFILVDF-DDGKDAAEAYQALLKRGVIVRPVAGYG-----LPNALRITIG-------TEEENRRFLAALKEFLA 365 (367)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHCCEEEEeCCCCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHHh
Confidence 457889987 445688888999999999987532221 1357999963 57889888888877654
No 18
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=90.24 E-value=2.4 Score=32.70 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=48.2
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|++++. ....+++.+++. ++.++.+.|.+.||.+.... .++.|||+.... .+++|+..+.+.+
T Consensus 303 g~~~~~-~~~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~----~t~edi~~~~~~l 365 (371)
T PRK13520 303 GFEPVI-EPVLNIVAFDDP----NPDEVREKLRERGWRVSVTR--------CPEALRIVCMPH----VTREHIENFLEDL 365 (371)
T ss_pred CCEEec-CCCceEEEEecC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECC----CCHHHHHHHHHHH
Confidence 455332 235677888764 67888899998899987532 135799997663 4689999999888
Q ss_pred HHHHH
Q 034072 82 DAAVK 86 (104)
Q Consensus 82 ~~~l~ 86 (104)
.+++.
T Consensus 366 ~~~~~ 370 (371)
T PRK13520 366 KEVKK 370 (371)
T ss_pred HHHhh
Confidence 77653
No 19
>PLN02721 threonine aldolase
Probab=89.79 E-value=3.1 Score=31.77 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=48.9
Q ss_pred CCCCCceeeEeccC-CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 8 GGTENHLVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 8 ggTd~Hlvlvdl~~-~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.....+++++++.. .+.+..+..+.|.+.||.+..- . ...|||... -..+++||+++.+.+.+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~----~-----~~~lR~~~~----~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 285 AAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPG----N-----SSRIRVVTH----HQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred CCccceEEEEEccCCccccHHHHHHHHHhCCcEEecC----C-----CceEEEEec----CcCCHHHHHHHHHHHHHHhh
Confidence 34556788888753 2357889999999999998732 1 357999853 24579999999999887664
No 20
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=89.27 E-value=2.7 Score=32.32 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=43.7
Q ss_pred eeeEeccCCCCCHHHHHHHHhhc-CceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAV-HIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~-gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
++++.+ +.+++..++.+.|.+. ||.+..-.-| ..+..||++.... .+++|++++.+.+.+++
T Consensus 293 ~~~~~~-~~~~~~~~~~~~L~~~~gI~~~~g~~~-----~~~~~iRis~~~~----~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 293 VTAVLV-PEGVDGDEVVRRLMKRYNIEIAGGLGP-----TAGKVFRIGHMGE----ATREDVLGVLSALEEAL 355 (356)
T ss_pred eEEEEC-CCCCCHHHHHHHHHHhCCEEEeccccc-----ccCCEEEEecCCC----CCHHHHHHHHHHHHHHh
Confidence 334543 4467889999999887 9998743211 1235799997665 56799999999887765
No 21
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=88.81 E-value=3.5 Score=32.75 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=47.7
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCC--CCCCCC--CCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTV--PGDVSA--MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~l--P~d~~~--~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
.-.+|+++.+.+++..+..+.|++.||.+..-.. |+.... .....+||+.. ..+++|++..+.|.+++..
T Consensus 338 g~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~------~~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 338 AIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV------QDDEEIEKGIAILAEEVEK 411 (416)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec------CCHHHHHHHHHHHHHHHHH
Confidence 4577899876556778888899999999875322 221110 01247999964 2478888888888887754
No 22
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=88.35 E-value=1.7 Score=34.51 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=44.2
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcC--ceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVH--IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~g--I~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
+...+.+|.+..|+++.++.+.|.+.+ |.+-. .+.+ .+.+||.... ++++|++.+++.+.++
T Consensus 299 ~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~--~~~~-----~~~~~l~~~~-----~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 299 ARAEIRFDESELGMTAADVVQALRQGEPAIYTRG--YKAN-----EGIIEIDPRS-----VTGGQLDIIVERIREI 362 (363)
T ss_pred ceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEee--eeec-----CCeEEEEeec-----CCHHHHHHHHHHHHHh
Confidence 445566776667999999999998777 55533 2222 2457877653 7799999999988765
No 23
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=88.09 E-value=4.7 Score=31.02 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=43.0
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
....+|+++. +.+..++.+.|.+.||.+.. +..+ .....+||+.. .++|++++.+.|.+++.
T Consensus 291 ~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~----~~~~-~~~~~iRis~~-------~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 291 KANFVFARHP--SHDAAELAAKLRERGIIVRH----FNKP-RIDQFLRITIG-------TDEEMEALVDALKEILA 352 (353)
T ss_pred cCcEEEEECC--CCCHHHHHHHHHHCCEEEEE----CCCC-CCCCeEEEEeC-------CHHHHHHHHHHHHHHhh
Confidence 3456787764 46788888999999999952 2211 12357999863 56888888888777653
No 24
>PRK07179 hypothetical protein; Provisional
Probab=86.58 E-value=2.3 Score=33.79 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|+++. .+.+++.+.+.. ..++..+.+.|.+.||.+..-.-|..+ ...+.|||..... .+++|++++.+.+
T Consensus 323 g~~v~---~~~~i~~l~~~~-~~~~~~~~~~L~~~GI~~~~~~~p~~~--~~~~~lRis~~~~----~t~edi~~~~~~l 392 (407)
T PRK07179 323 GYNIR---SESQIIALETGS-ERNTEVLRDALEERNVFGAVFCAPATP--KNRNLIRLSLNAD----LTASDLDRVLEVC 392 (407)
T ss_pred CCCCC---CCCCEEEEEeCC-HHHHHHHHHHHHHCCceEeeecCCCCC--CCCceEEEEECCC----CCHHHHHHHHHHH
Confidence 45554 245777776432 225567778899999986533334332 1246799997654 5779999999888
Q ss_pred HHHHH
Q 034072 82 DAAVK 86 (104)
Q Consensus 82 ~~~l~ 86 (104)
.+++.
T Consensus 393 ~~~~~ 397 (407)
T PRK07179 393 REARD 397 (407)
T ss_pred HHHHH
Confidence 87765
No 25
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=85.65 E-value=5.1 Score=33.22 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=51.2
Q ss_pred CCCceeeEecc---CCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLK---NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 10 Td~Hlvlvdl~---~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
...|.++++.. ..|++..++.++|.+.||.+.....|.- ....+|+...+.+++ +|+..+.+.+.++..
T Consensus 376 ~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~----~~~~l~is~~e~~t~----edid~l~~~l~~i~~ 447 (481)
T PRK04366 376 PCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLI----VPEALMIEPTETESK----ETLDAFIAAMKQIAE 447 (481)
T ss_pred CeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccc----cCCeEEEcccCCCCH----HHHHHHHHHHHHHHH
Confidence 34477888853 3366888999999999999875544432 134699998886655 899988888877765
Q ss_pred HH
Q 034072 87 LT 88 (104)
Q Consensus 87 ~~ 88 (104)
..
T Consensus 448 ~~ 449 (481)
T PRK04366 448 EA 449 (481)
T ss_pred HH
Confidence 43
No 26
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=84.92 E-value=5.6 Score=31.98 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCCceeeEeccCCCC--------CHHHHHHHHhhcCceeccCC-CCCC-CCCCCCCeeeEcchhHhhcCCCHHHHHHHH
Q 034072 9 GTENHLVLVNLKNKGI--------DGSRVEKVLEAVHIAANKNT-VPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 9 gTd~Hlvlvdl~~~gi--------~g~~a~~~Le~~gI~vnkn~-lP~d-~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia 78 (104)
.++++++-|++.+... -+.++.+.|.+.||.++... -|.. .....+.-||+- ++.+.+++|++++.
T Consensus 298 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~----~~~~~t~eei~~~~ 373 (392)
T PLN03227 298 DPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVV----ANASHTREDIDKLL 373 (392)
T ss_pred CCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEE----ecCCCCHHHHHHHH
Confidence 3578888888743211 12477778888899986532 1111 111123568885 67789999999999
Q ss_pred HHHHHHHHHH
Q 034072 79 YFFDAAVKLT 88 (104)
Q Consensus 79 ~~i~~~l~~~ 88 (104)
+.+.+++...
T Consensus 374 ~~l~~~~~~~ 383 (392)
T PLN03227 374 TVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHH
Confidence 9999988643
No 27
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=84.55 E-value=3.8 Score=31.60 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=45.4
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
..+++++.+.. ..+..++.+.|.+.||.+.....|..+ .....|||+... ..+++|++++.+.|.++|
T Consensus 318 ~~~~~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~~--~~~~~lRis~~~----~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 318 QSAIQPLIVGD-NERALALAAALQEQGFWVGAIRPPTVP--AGTSRLRITLTA----AHTEADIDRLLEALAEAL 385 (385)
T ss_pred CCCEEEEEeCC-HHHHHHHHHHHHHCCceEecccCCCCC--CCCceEEEEecC----CCCHHHHHHHHHHHHhcC
Confidence 45677887642 246677888889999999754333211 112579998643 246899999988887653
No 28
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=84.45 E-value=8.5 Score=30.27 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=45.6
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
....++++++........+..+.|.+.||.+. .|+... ....+||+.. .++|++.+.+.+.+++.
T Consensus 300 ~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~---~p~~~~--~~~~iRis~~-------~~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 300 SATNFVAIDCGRDGAFARAVLDGLIARDIFVR---MPGVAP--LDRCIRVSCG-------PDEELDLFAEALPEALE 364 (369)
T ss_pred CcCcEEEEECCCCcccHHHHHHHHHHCCeEEe---eCCCCC--CCCeEEEecC-------CHHHHHHHHHHHHHHHH
Confidence 44567888875444567777777778999984 244321 1357999965 47899999988888775
No 29
>PRK07908 hypothetical protein; Provisional
Probab=84.31 E-value=5 Score=31.10 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=44.2
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.....+|+++.+ ..++.+.|++.||.+.. ++. ....+..+||+.. .++|++++.+.+.+++.
T Consensus 284 ~~g~~~~~~~~~----~~~~~~~l~~~gI~v~~----g~~f~~~~~~~vRis~~-------~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 284 AAAPFVLVRVPD----AELLRKRLRERGIAVRR----GDTFPGLDPDYLRLAVR-------PRAEVPVLVQALAEILK 346 (349)
T ss_pred CCceEEEEECCc----HHHHHHHHHhCCEEEEE----CCCCCCCCCCeEEEEeC-------CCccHHHHHHHHHHHHh
Confidence 456677888752 67888999999999873 321 1112468999972 67899998888877654
No 30
>PRK10534 L-threonine aldolase; Provisional
Probab=83.08 E-value=5.8 Score=30.34 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|+++. -++++++++++.+ .+..++.+.|.+.||.+.. + ..+||... .| .+++|++++.+.|
T Consensus 267 g~~~~--~~~~nfv~~~~~~--~~~~~~~~~l~~~gi~v~~----~-------~~~rl~~~---~r-~t~e~~~~~~~~l 327 (333)
T PRK10534 267 GADVM--RQDTNMLFVRVGE--EQAAALGEYMRERNVLINA----S-------PIVRLVTH---LD-VSREQLAEVVAHW 327 (333)
T ss_pred CCccC--CCCceEEEEECCc--hhHHHHHHHHHHcCeeecC----C-------ceEEEEEE---eC-CCHHHHHHHHHHH
Confidence 45443 2478899998753 2567888999999999953 2 14788653 23 4789999988888
Q ss_pred HHHH
Q 034072 82 DAAV 85 (104)
Q Consensus 82 ~~~l 85 (104)
.+.+
T Consensus 328 ~~~~ 331 (333)
T PRK10534 328 RAFL 331 (333)
T ss_pred HHHh
Confidence 7654
No 31
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=83.07 E-value=5.7 Score=31.54 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=46.5
Q ss_pred CCeeeeCC-CCCceeeEecc-------CCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHH
Q 034072 2 GYELVSGG-TENHLVLVNLK-------NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEED 73 (104)
Q Consensus 2 G~~vv~gg-Td~Hlvlvdl~-------~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~d 73 (104)
|++++... ..++++.+|+. ..+.+|.++.+.|++.||.. ++.+. ..-+|+++ .|.+++|
T Consensus 301 g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~----~~~~~----~~i~ri~~-----~g~t~~d 367 (387)
T PRK09331 301 GFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHG----IKPGA----TKEFKLST-----YGLTWEQ 367 (387)
T ss_pred CEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceE----EccCC----ceEEEEEe-----ccCCHHH
Confidence 67777532 34555556643 23446778999999999962 22221 22378876 5678899
Q ss_pred HHHHHHHHHHHHH
Q 034072 74 FAKVAYFFDAAVK 86 (104)
Q Consensus 74 m~~Ia~~i~~~l~ 86 (104)
++.+.+.+.+++.
T Consensus 368 i~~l~~aL~~i~~ 380 (387)
T PRK09331 368 VEYVADAFKEIAE 380 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888877654
No 32
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=83.03 E-value=8 Score=29.65 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=41.6
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|+++.. .....+++++.. +..+..+.|.+.||.+..-.-. ... ...+||+.. +++|++++.+.|
T Consensus 282 g~~~~~--~~g~~~~~~~~~---~~~~~~~~L~~~gI~v~~g~~f---~~~-~~~iRls~~-------~~~~i~~~~~~l 345 (346)
T TIGR01141 282 GLEVYP--SDANFVLIRFPR---DADALFEALLEKGIIVRDLNSY---PGL-PNCLRITVG-------TREENDRFLAAL 345 (346)
T ss_pred CCEECC--CcCCEEEEecCC---CHHHHHHHHHHCCeEEEeCCCc---CCC-CCeEEEecC-------CHHHHHHHHHHh
Confidence 455432 345688888763 7788899999999998733211 111 467999953 577777666543
No 33
>PRK09064 5-aminolevulinate synthase; Validated
Probab=82.58 E-value=4 Score=32.32 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=48.8
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
|++++. .+++++.+.+.. ..+..++.+.| ++.||.|....-|.-+ ...+.|||..... .+++|++++.+.
T Consensus 320 g~~~~~--~~~~iv~i~~~~-~~~~~~l~~~L~~~~gi~v~~~~~p~~~--~~~~~lRis~~~~----~t~edi~~l~~~ 390 (407)
T PRK09064 320 GIPVMP--NESHIVPVMVGD-PEKCKKASDMLLEEHGIYVQPINYPTVP--RGTERLRITPTPF----HTDEMIDHLVEA 390 (407)
T ss_pred CCCCCC--CCCCEEEEEeCC-HHHHHHHHHHHHHhCCEEEeeECCCCCC--CCCceEEEEeCCC----CCHHHHHHHHHH
Confidence 555543 457787776532 12455666665 6779999875544322 1124699985533 567999999999
Q ss_pred HHHHHH
Q 034072 81 FDAAVK 86 (104)
Q Consensus 81 i~~~l~ 86 (104)
|.+++.
T Consensus 391 l~~~~~ 396 (407)
T PRK09064 391 LVEVWA 396 (407)
T ss_pred HHHHHH
Confidence 988764
No 34
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=81.96 E-value=5.8 Score=31.29 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=49.1
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCC---CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV---SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~---~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
..+.++.+++. ++++.++.+.|++.||.+.....+..+ ..-..+.|||+....+ +++|++.+.+.|.+++.
T Consensus 324 ~~~~i~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~n----t~edid~ll~al~~~~~ 397 (401)
T PRK10874 324 QDSSLLAFDFA--GVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYN----TQSDVDALVNAVDRALE 397 (401)
T ss_pred CCCcEEEEEEC--CcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccC----CHHHHHHHHHHHHHHHH
Confidence 34567776653 567889999999999998854322210 0001357999987664 67999999998887665
No 35
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=81.86 E-value=11 Score=29.64 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=47.8
Q ss_pred CCeeee-CCCCCceeeEeccCC-------CCCHHHHHHHHhhcCce-eccCCCCCCCCCCCCCeeeEcchhHhhcCCCHH
Q 034072 2 GYELVS-GGTENHLVLVNLKNK-------GIDGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEE 72 (104)
Q Consensus 2 G~~vv~-ggTd~Hlvlvdl~~~-------gi~g~~a~~~Le~~gI~-vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~ 72 (104)
|+++++ ...+++++++++... .-++..+.+.|.+.||. +. |+. ..-|||.. + +.+++
T Consensus 288 g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir----~~~-----~~~iRis~--~---~~t~e 353 (370)
T TIGR02539 288 GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR----SGQ-----TKYFKLSV--Y---GLTKE 353 (370)
T ss_pred CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc----CCc-----ceEEEEEe--c---CCCHH
Confidence 566653 346788998886421 11345688888888996 32 221 23699985 2 46899
Q ss_pred HHHHHHHHHHHHHH
Q 034072 73 DFAKVAYFFDAAVK 86 (104)
Q Consensus 73 dm~~Ia~~i~~~l~ 86 (104)
|++++.+.|.++++
T Consensus 354 ~i~~l~~~L~~~~~ 367 (370)
T TIGR02539 354 QVEYVVDSFEEIVE 367 (370)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 36
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=81.58 E-value=5.4 Score=31.72 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=48.1
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
|+++. ..+++++.+.+. ...+..++.+.| ++.||.+.....|.-+. ..+.|||..+.. .+++|++.+.+.
T Consensus 320 g~~~~--~~~~~~~~i~~~-~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~--~~~~lRis~~~~----~t~edid~l~~a 390 (410)
T PRK13392 320 GIPVM--PSPSHIVPVMVG-DPTLCKAISDRLMSEHGIYIQPINYPTVPR--GTERLRITPTPL----HDDEDIDALVAA 390 (410)
T ss_pred CCCCC--CCCCCEEEEEeC-CHHHHHHHHHHHHHhCCEEEeeeCCCCCCC--CCceEEEEECCC----CCHHHHHHHHHH
Confidence 44443 346777766653 122345666666 68999999765553321 135699997654 346899998888
Q ss_pred HHHHHH
Q 034072 81 FDAAVK 86 (104)
Q Consensus 81 i~~~l~ 86 (104)
|.++++
T Consensus 391 L~~~~~ 396 (410)
T PRK13392 391 LVAIWD 396 (410)
T ss_pred HHHHHH
Confidence 877653
No 37
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=81.46 E-value=8.9 Score=30.17 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=40.3
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.-.+|+++.. +++..+..+.|.+.||.+.. . .+.+||+... ++++++.-+.|.+++.
T Consensus 314 g~f~~~~l~~-~~~~~~~~~~l~~~gi~v~~----~------~~~lRls~~~-------~~~~~~~l~~l~~~l~ 370 (374)
T PRK02610 314 ANFLYLRLSQ-DAALAALHQALKAQGTLVRH----T------GGGLRITIGT-------PEENQRTLERLQAALT 370 (374)
T ss_pred ceEEEEeCCC-CCCHHHHHHHHHHCCEEEEe----C------CCeEEEeCCC-------HHHHHHHHHHHHHHHh
Confidence 3367888753 56888889999999999952 1 2579999542 4567777777766654
No 38
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=81.40 E-value=3.1 Score=33.69 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=45.4
Q ss_pred CCeeee--CCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCC-CCCCCCCeeeEcchhHhhcCCCHHHHH
Q 034072 2 GYELVS--GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFA 75 (104)
Q Consensus 2 G~~vv~--ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d-~~~~~~sglRlGT~a~T~RG~~e~dm~ 75 (104)
|-.|++ --.|--++++|.+.....-...|+-||+.||++||.. |+- -......||.+++...-++ ++|+-..
T Consensus 130 GRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~-Pniy~k~kk~gGi~f~~T~~lT~-~~ek~i~ 204 (364)
T KOG1486|consen 130 GRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRK-PNIYFKKKKTGGISFNTTVPLTH-CDEKLIY 204 (364)
T ss_pred CceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCC-CCeEEEeeccCCeEEeeeecccc-ccHHHHH
Confidence 444444 3456667778876656456688999999999999862 322 1223457899986544333 5554433
No 39
>PRK06108 aspartate aminotransferase; Provisional
Probab=81.37 E-value=8.4 Score=29.90 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=40.0
Q ss_pred ceeeEeccCCCCCHHHHHHH-HhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~-Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-.+|+++.+. .+..+..+. +++.||.+- |+.. .+...+.+||+... .++++++..+.|.++++
T Consensus 317 ~~~~~~l~~~-~~~~~~~~~ll~~~gV~v~----pg~~f~~~~~~~~Ris~~~------~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 317 MYAFFRIPGV-TDSLALAKRLVDEAGLGLA----PGTAFGPGGEGFLRWCFAR------DPARLDEAVERLRRFLA 381 (382)
T ss_pred EEEEEeCCCC-CCHHHHHHHHHHhCCEEEe----CchhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHHh
Confidence 3467787543 356655554 588999884 3321 11124679997553 68888888888877653
No 40
>PRK03321 putative aminotransferase; Provisional
Probab=80.66 E-value=10 Score=29.32 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=41.3
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
...+|+++. .+..+..+.|++.||.+.. ++ ..+|||+. ..+++++++.+.+.+++.
T Consensus 295 g~~i~i~l~---~~~~~~~~~l~~~gI~v~~----~~-----~~~iRi~~-------~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 295 ANFVWLPLG---ERTADFAAAAAEAGVVVRP----FA-----GEGVRVTI-------GAPEENDAFLRAARAWRA 350 (352)
T ss_pred CCEEEEeCC---CCHHHHHHHHHHCCEEEEc----cC-----CCcEEEee-------CCHHHHHHHHHHHHHHhc
Confidence 346888873 2567788889999999863 32 24699995 477999999888877653
No 41
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=80.24 E-value=11 Score=31.54 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=39.4
Q ss_pred ceeeEeccCCCCC-------HHHHHHHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGID-------GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 13 Hlvlvdl~~~gi~-------g~~a~~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
=.+|+|+++.--+ -.-+++.++++||.+.. +.. ....++.+||+... +.++++++--+.|.++
T Consensus 365 ~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~p----Gs~F~~~~~g~~Ri~fa~-----~~~~~l~~al~rl~~~ 435 (496)
T PLN02376 365 LFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSP----GSSFRCTEPGWFRICFAN-----MDDDTLHVALGRIQDF 435 (496)
T ss_pred EEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeC----ccccCCCCCCEEEEEeeC-----CCHHHHHHHHHHHHHH
Confidence 3678998642211 22344556778998874 321 11124679999653 4567777777777777
Q ss_pred HHH
Q 034072 85 VKL 87 (104)
Q Consensus 85 l~~ 87 (104)
+..
T Consensus 436 l~~ 438 (496)
T PLN02376 436 VSK 438 (496)
T ss_pred HHH
Confidence 753
No 42
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=80.19 E-value=4.8 Score=31.90 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=48.0
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
|++++. .+++++.+.+... ....++.+.| ++.||.+.....|.-+. ..+.|||..+.. .+++|++++.+.
T Consensus 319 g~~~~~--~~~~i~~i~~~~~-~~a~~~~~~L~~~~Gi~v~~~~~p~~~~--g~~~lRis~~~~----~t~edi~~~~~~ 389 (402)
T TIGR01821 319 GIPVIP--NPSHIVPVIIGDA-ALCKKVSDLLLNKHGIYVQPINYPTVPR--GTERLRITPTPA----HTDKMIDDLVEA 389 (402)
T ss_pred CCCcCC--CCCCEEEEEeCCH-HHHHHHHHHHHhcCCEEEEeECCCCCCC--CCceEEEEeCCC----CCHHHHHHHHHH
Confidence 455442 4677777765321 1345566665 57799998755453321 135699997664 567999999988
Q ss_pred HHHHHH
Q 034072 81 FDAAVK 86 (104)
Q Consensus 81 i~~~l~ 86 (104)
+.+++.
T Consensus 390 l~~~~~ 395 (402)
T TIGR01821 390 LLLVWD 395 (402)
T ss_pred HHHHHH
Confidence 877764
No 43
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=80.19 E-value=12 Score=29.26 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=47.0
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccC--CCCCCC------------CCCCCCeeeEcchhHhhcCCCHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKN--TVPGDV------------SAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn--~lP~d~------------~~~~~sglRlGT~a~T~RG~~e~dm~~Ia 78 (104)
+.+++.+. ++++.++.+.|++.||.+..- +-++.. .....+.||++.... -+++|++++.
T Consensus 293 ~~~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~----~t~~did~~~ 366 (382)
T TIGR03403 293 NTILISIK--GVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRF----TTEEEIDYTI 366 (382)
T ss_pred CEEEEEeC--CCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCC----CCHHHHHHHH
Confidence 46666653 678999988999999999841 111110 011125699997765 4568999999
Q ss_pred HHHHHHHHHH
Q 034072 79 YFFDAAVKLT 88 (104)
Q Consensus 79 ~~i~~~l~~~ 88 (104)
+.|.++++..
T Consensus 367 ~~l~~~~~~~ 376 (382)
T TIGR03403 367 EVFKKAVQRL 376 (382)
T ss_pred HHHHHHHHHH
Confidence 8888876643
No 44
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=79.77 E-value=9.1 Score=30.72 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=44.0
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.-.+|+++.. +..+..+.|.+.||.+..-..-+... ....+||+... ..++++++..+.|.++++
T Consensus 366 g~f~~~~l~~---~~~~~~~~l~~~gV~v~pg~~f~~~~--~~~~iRis~~~-----~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 366 GLNLWLPLDT---DSQATALTLAKSGWLVREGEAFGVSA--PSHGLRITLST-----LNDAEINRLAADLHQALN 430 (431)
T ss_pred eEEEEEECCC---CHHHHHHHHHHCCcEEecCCccccCC--CCCeEEEEcCC-----CChHHHHHHHHHHHHHhc
Confidence 4567888753 45677778888999997532211111 13579999533 457899999999988764
No 45
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=79.63 E-value=11 Score=29.25 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=45.3
Q ss_pred CCeeeeCC-CCCceeeEeccC-------CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHH
Q 034072 2 GYELVSGG-TENHLVLVNLKN-------KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEED 73 (104)
Q Consensus 2 G~~vv~gg-Td~Hlvlvdl~~-------~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~d 73 (104)
|++++..+ .++.+++++... ...+|.++.+.|.+.||.+. .|+. ..-+|+++ .|.+++|
T Consensus 282 g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~---~~~~-----~~~~ri~~-----~g~~~e~ 348 (361)
T cd06452 282 GIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGI---KPGL-----TRYFKLST-----YGLTWEQ 348 (361)
T ss_pred CeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEE---cCCC-----ceEEEEEe-----cCCCHHH
Confidence 66776423 345566677531 12346678888988899953 1222 23588875 5678899
Q ss_pred HHHHHHHHHHHH
Q 034072 74 FAKVAYFFDAAV 85 (104)
Q Consensus 74 m~~Ia~~i~~~l 85 (104)
++.+.+.|.+++
T Consensus 349 ~~~l~~al~~~~ 360 (361)
T cd06452 349 VEYVVDAFKEIA 360 (361)
T ss_pred HHHHHHHHHHHh
Confidence 998888876543
No 46
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=79.59 E-value=8.6 Score=29.18 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=42.0
Q ss_pred eeeEeccCC-CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 14 lvlvdl~~~-gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
++++.+... ..+..+..+.|.+.||.+....-+. ...|||+.... .+++||++..+.|.++|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~------~~~iRis~~~~----~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 293 IVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTL------ADTFRIGTIGE----IDAADIERLLEAIKDAL 355 (355)
T ss_pred EEEEECCCCCcchHHHHHHHHHHCCEEEECCcccc------ccEEEEecCCC----CCHHHHHHHHHHHHhhC
Confidence 345665431 2567789999999999987532111 15799986443 46799999998887653
No 47
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=78.70 E-value=11 Score=28.48 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=41.3
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.|.+++...+.+.+..+..+.|.+.||.+.....+.. ......|||+... -.+++|++++.+.|.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~--~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 282 SHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTV--PRGTARLRISLSA----AHTKEDIDRLLEALKE 347 (349)
T ss_pred CCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCcc--CCCCCeEEEEEeC----CCCHHHHHHHHHHHHH
Confidence 4554433223244677888888888999986422211 1113579999642 3578999999888764
No 48
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=78.50 E-value=9 Score=30.17 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=47.2
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCC---CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV---SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~---~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.++++.+.+. ++++.++.+.|.+.||.+..-.-...+ .-...+.||++.... -+++|++.+.+.|.+++.
T Consensus 322 ~~~i~~~~~~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~----~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 322 GSSLLAFDFA--GVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPY----NTQQDVDALVDAVGAALE 394 (398)
T ss_pred CCcEEEEEeC--CcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeecc----CCHHHHHHHHHHHHHHHH
Confidence 4666666643 678899999999999998753211100 000135799997654 456899999998887665
No 49
>PRK08361 aspartate aminotransferase; Provisional
Probab=78.43 E-value=14 Score=29.17 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=41.2
Q ss_pred CceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+-.+|+++.+.+++..+..+.| ++.||.+..-.. +. ....+.+||+.. ..++++++-.+.|.++++
T Consensus 323 ~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~-f~--~~~~~~iRi~~~------~~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 323 AFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTA-FG--KAGEGYIRISYA------TSKEKLIEAMERMEKALE 389 (391)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchh-hC--CCCCCEEEEEec------CCHHHHHHHHHHHHHHHh
Confidence 4467888876677777777766 578998863211 11 112367999954 246666666666665553
No 50
>PLN00175 aminotransferase family protein; Provisional
Probab=78.21 E-value=11 Score=30.31 Aligned_cols=70 Identities=19% Similarity=0.082 Sum_probs=42.9
Q ss_pred CCceeeEeccCCCC-CHHH-HHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGI-DGSR-VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~gi-~g~~-a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-++.+|+++.+.++ +..+ ++..+++.||.+..-..=+.........|||+.. ..+++|++..+.|.++++
T Consensus 341 g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~------~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 341 GTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC------KDEETLRAAVERMKTKLK 412 (413)
T ss_pred eeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc------CCHHHHHHHHHHHHHHHh
Confidence 35778999865565 4544 4555678999986321101111111346999964 258888888888877654
No 51
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=78.14 E-value=15 Score=28.36 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=40.1
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
..+|+++. .+..+..+.|.+.||.+......+ .+..+||+.. .++|++++.+.|.++
T Consensus 302 ~~i~~~~~---~~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRi~~~-------~~~~~~~l~~al~~~ 358 (359)
T PRK03158 302 NFIFVDTG---RDANELFEALLKKGYIVRSGAALG-----FPTGVRITIG-------LKEQNDKIIELLKEL 358 (359)
T ss_pred cEEEEECC---CCHHHHHHHHHHCCeEEeeCCCCC-----CCCeEEEecC-------CHHHHHHHHHHHHHh
Confidence 36788763 467788888888999987533221 1357999843 678898888887664
No 52
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=77.70 E-value=17 Score=28.88 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=41.7
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.....+|+++.+ +++..+..+.|.+.||.+.. +.... ....+||+.. .++||+.+.+.+.+
T Consensus 318 ~~~~f~~~~~~~-~~~~~~~~~~l~~~gI~v~~----~~~~~-~~~~lRis~~-------~~~~~~~l~~al~~ 378 (380)
T PLN03026 318 SDANFILCRVTS-GRDAKKLKEDLAKMGVMVRH----YNSKE-LKGYIRVSVG-------KPEHTDALMEALKQ 378 (380)
T ss_pred CCCeEEEEECCC-CCCHHHHHHHHHHCCeEEEE----CCCCC-CCCEEEEecC-------CHHHHHHHHHHHHH
Confidence 445678888643 56788888888899999863 22111 2356999954 56788888777654
No 53
>PLN02822 serine palmitoyltransferase
Probab=76.96 E-value=11 Score=31.26 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=48.5
Q ss_pred CCCCceeeEeccCC-CC---C---HHH-HHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 9 GTENHLVLVNLKNK-GI---D---GSR-VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 9 gTd~Hlvlvdl~~~-gi---~---g~~-a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
...+.++++++... +. + ..+ +.++|++.||.+.....|.......+..+||.... +.+++|+++..+.
T Consensus 395 ~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~----~~t~edI~~~~~~ 470 (481)
T PLN02822 395 NTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSA----GHTESDILKASES 470 (481)
T ss_pred CCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECC----CCCHHHHHHHHHH
Confidence 35788888888532 11 1 233 44455689999997554543222123579987433 4688999999999
Q ss_pred HHHHHHH
Q 034072 81 FDAAVKL 87 (104)
Q Consensus 81 i~~~l~~ 87 (104)
|.+++..
T Consensus 471 l~~~~~~ 477 (481)
T PLN02822 471 LKRVAAS 477 (481)
T ss_pred HHHHHHH
Confidence 9887763
No 54
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=76.60 E-value=12 Score=30.02 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=46.3
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|++++ .+..-+.+.+++. .+..++.+.|.+.||.+....-|+.+ .. ..-+|++..+.+ +++|++++.+.+
T Consensus 373 g~~~~-~~~~~~~~~v~~~---~~~~~~~~~L~~~gi~~~~~~~~~~~-~~-~~~~rvs~~~~~----t~e~i~~l~~~L 442 (447)
T PRK00451 373 GVELF-DGPFFNEFVVRLP---KPAEEVNEALLEKGILGGYDLGRYYP-EL-GNHLLVCVTEKR----TKEDIDALVAAL 442 (447)
T ss_pred CEEec-CCCeEEEEEEecC---CCHHHHHHHHHhcCCCCCcccccccC-Cc-CCEEEEecCCCC----CHHHHHHHHHHH
Confidence 45555 3344455567752 46788899999999986543333322 11 246999977665 448888888887
Q ss_pred HHH
Q 034072 82 DAA 84 (104)
Q Consensus 82 ~~~ 84 (104)
.++
T Consensus 443 ~~~ 445 (447)
T PRK00451 443 GEV 445 (447)
T ss_pred HHH
Confidence 654
No 55
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=76.28 E-value=26 Score=27.11 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=47.2
Q ss_pred CCeeeeC-CCCCce-eeEeccCC-CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHH
Q 034072 2 GYELVSG-GTENHL-VLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 2 G~~vv~g-gTd~Hl-vlvdl~~~-gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia 78 (104)
|++++.. ...++. .++.+.+. .++..++.+.|++.||.+..-..+ ....+|||...- .+++|+++..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~------~~~~iRi~~~~~----~~~edv~~~l 353 (363)
T TIGR02326 284 GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVS------QVDCFRIGNIGE----VDAADITRLL 353 (363)
T ss_pred CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCC------CCCEEEEecCCC----CCHHHHHHHH
Confidence 4555432 123433 34444321 367788889999999998643222 135799996432 3589999999
Q ss_pred HHHHHHHH
Q 034072 79 YFFDAAVK 86 (104)
Q Consensus 79 ~~i~~~l~ 86 (104)
+.|.++|.
T Consensus 354 ~~l~~~l~ 361 (363)
T TIGR02326 354 TAIGKAMY 361 (363)
T ss_pred HHHHHHhC
Confidence 98888764
No 56
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=76.04 E-value=22 Score=29.39 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=45.7
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
.+|+++ +.+++..+..+.+.+.|+.+-.-.-.+...+...+++|||....+ ++++++-...+.+++..
T Consensus 388 flwl~l-~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~-----~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 388 FLWLEL-PEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPS-----EEEIEEGIKRLAALLRE 455 (459)
T ss_pred EEEEEc-CCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCC-----HHHHHHHHHHHHHHHHH
Confidence 456775 557899999999999999887643334332224569999976544 56676666666666553
No 57
>PRK05839 hypothetical protein; Provisional
Probab=75.75 E-value=17 Score=28.70 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=39.5
Q ss_pred CceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.=.+|+++. +..+..+.| ++.||.|......+.. ...++.+||+.. ..++++++..+.|.++++
T Consensus 309 g~fi~~~~~----~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~~~iRis~~------~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 309 TFYVWLPVD----NDEEFTKKLYQNEGIKVLPGSFLGRN-GIGKGYVRIALV------YDTPKLEKALEIIKTYLE 373 (374)
T ss_pred eEEEEEeCC----ChHHHHHHHHHHCCEEEeCchhhCCC-CCCCCeEEEEec------CCHHHHHHHHHHHHHHhh
Confidence 336788874 334454555 6799998743222211 112468999972 357888888888877664
No 58
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=75.69 E-value=11 Score=29.43 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=46.0
Q ss_pred CeeeeC---CCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCC--------CCCCCCCCCeeeEcchhHhhcCCCH
Q 034072 3 YELVSG---GTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVP--------GDVSAMVPGGIRMGTPALTSRGFVE 71 (104)
Q Consensus 3 ~~vv~g---gTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP--------~d~~~~~~sglRlGT~a~T~RG~~e 71 (104)
++++.. ...++++.+.+. +.+..+..++|++.||.+...... +.+ ...+.|||+....+ ++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~--~~~~~iRis~~~~~----t~ 387 (397)
T TIGR01976 316 VTLYGVARLAARVPTVSFTVH--GLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLN--DEGGVVRVGLAHYN----TA 387 (397)
T ss_pred EEEeCCCCccCCCceEEEEeC--CcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCC--CCCCeEEEEeeccC----CH
Confidence 556543 346777777653 567888999999999999864221 111 11357999987754 46
Q ss_pred HHHHHHHHH
Q 034072 72 EDFAKVAYF 80 (104)
Q Consensus 72 ~dm~~Ia~~ 80 (104)
+|+..+.+.
T Consensus 388 ~di~~l~~~ 396 (397)
T TIGR01976 388 EEVDRLLEA 396 (397)
T ss_pred HHHHHHHHh
Confidence 777776653
No 59
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=74.27 E-value=18 Score=28.07 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=38.1
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
.-.+|+++. +..++.+.|.+.||.|.. +......+..+||+.. .+++++.+-+.|.++
T Consensus 292 ~~~~~i~~~----~~~~~~~~l~~~gV~v~~----~~~~~~~~~~iRis~~-------~~~~~~~l~~~l~~~ 349 (351)
T PRK14807 292 TNFILVKFK----DADYVYQGLLERGILVRD----FSKVEGLEGALRITVS-------SCEANDYLINGLKEL 349 (351)
T ss_pred ccEEEEEcC----CHHHHHHHHHHCCEEEEE----CCCCCCCCCeEEEEcC-------CHHHHHHHHHHHHHh
Confidence 335778764 567888888889999963 3211112457999954 467777777666554
No 60
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=74.15 E-value=12 Score=27.87 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=43.0
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
....++++.+... .+.+.+.+.|.+.||.+.....+.. ..++.+||+.... .+|++.+.+.|
T Consensus 287 ~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~---~~~~~iRi~~~~~------~~~i~~~~~al 348 (350)
T cd00609 287 SGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGE---GGEGFVRLSFATP------EEELEEALERL 348 (350)
T ss_pred CccEEEEEecCCC-ChHHHHHHHHHhCCEEEeccccccc---CCCCeEEEEeeCC------HHHHHHHHHHh
Confidence 3355777776433 4788899999999999986544332 2346899996544 78887777665
No 61
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=73.83 E-value=12 Score=29.72 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHh-hcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLE-AVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le-~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
|++++. .+.+++.+.+.. ..+..++.+.|. +.||.+.....|.-+ ...+.|||..+.. .+++|++++.+.
T Consensus 319 g~~~~~--~~~~i~~v~~~~-~~~~~~l~~~L~~~~Gi~v~~~~~p~~p--~g~~~iRis~~~~----~t~edid~l~~~ 389 (406)
T PRK13393 319 GIPHLP--NPSHIVPVMVGD-PVLCKQISDELLDRYGIYVQPINYPTVP--RGTERLRITPSPL----HTDADIEHLVQA 389 (406)
T ss_pred CCCcCC--CCCCeEEEEeCC-HHHHHHHHHHHHHhCCEEEEeECCCCCC--CCCceEEEEECCC----CCHHHHHHHHHH
Confidence 444442 356676665421 123456666665 479999876555432 1125699986554 456999999999
Q ss_pred HHHHHHH
Q 034072 81 FDAAVKL 87 (104)
Q Consensus 81 i~~~l~~ 87 (104)
|.+++..
T Consensus 390 l~~~~~~ 396 (406)
T PRK13393 390 LSEIWAR 396 (406)
T ss_pred HHHHHHh
Confidence 9887653
No 62
>PF05370 DUF749: Domain of unknown function (DUF749); InterPro: IPR008032 This is a family of unknown function found in archaebacterial proteins. The family has been solved via structural genomics techniques and comprises of segregated helical and anti-parallel beta sheet regions. It is a putative metal-binding protein. ; PDB: 1IQS_A 1IQO_A.
Probab=73.81 E-value=3.2 Score=27.83 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=24.2
Q ss_pred CCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCC
Q 034072 8 GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT 44 (104)
Q Consensus 8 ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~ 44 (104)
-||.+|+|+. +.+.. +=.++++-|++.|..+|.++
T Consensus 45 ~gTtSy~v~F-Ld~~~-~ieeIk~eL~e~ga~lN~dS 79 (87)
T PF05370_consen 45 QGTTSYQVFF-LDSYN-SIEEIKEELKEAGAKLNHDS 79 (87)
T ss_dssp TTTT-EEEEE--S----S-HHHHHHHHHHHHSSS-SS
T ss_pred cCCceEEEEE-EcCCC-CHHHHHHHHHHcCceecccH
Confidence 6899999885 44555 88899999999999999764
No 63
>PRK09105 putative aminotransferase; Provisional
Probab=73.63 E-value=27 Score=27.59 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
+.-++++++. .+..+..+.|.+.||.+... .+. .++.+||+.. .+++++.+.+.+.+++
T Consensus 310 ~~~f~~~~~~---~~~~~l~~~L~~~gI~v~~~-~~~-----~~~~~Ris~~-------~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 310 QANCFMVDVK---RPAKAVADAMAKQGVFIGRS-WPI-----WPNWVRVTVG-------SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CCcEEEEeCC---CCHHHHHHHHHHCCcEEecC-CCC-----CCCeEEEEcC-------CHHHHHHHHHHHHHHh
Confidence 3446677763 47777888777889999322 221 1367999965 4688888887776654
No 64
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=73.29 E-value=18 Score=27.96 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+++..++.+.|.+.||.+.....+ ..+.+|||... -.+++|++.+.+.+.+++.
T Consensus 309 ~~~~~~l~~~L~~~gi~v~~g~~~------~~~~iRis~~~----~~t~edi~~~l~~L~~~l~ 362 (368)
T PRK13479 309 AYDFKEFYERLKEQGFVIYPGKLT------QVDTFRIGCIG----DVDAADIRRLVAAIAEALY 362 (368)
T ss_pred CcCHHHHHHHHHHCCEEEecCCCC------CCCEEEEecCC----CCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999643221 13579999643 2468999999999888775
No 65
>PRK05764 aspartate aminotransferase; Provisional
Probab=73.02 E-value=30 Score=27.03 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCeeeeCCCCCceeeEeccCC----CCCHHHHH-HHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNK----GIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAK 76 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~----gi~g~~a~-~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~ 76 (104)
|+++. ....+..+|+++... +.+..+.. ..+++.||.+-.... + .. ...+||+.. ..+++|.+
T Consensus 313 g~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-f--~~--~~~vRis~~------~~~~~~~~ 380 (393)
T PRK05764 313 GLECP-KPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIA-F--GA--PGYVRLSYA------TSLEDLEE 380 (393)
T ss_pred CCccc-CCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccc-c--CC--CCEEEEEec------CCHHHHHH
Confidence 44443 334455678887542 11245554 556789998853211 1 11 357999843 35888888
Q ss_pred HHHHHHHHHH
Q 034072 77 VAYFFDAAVK 86 (104)
Q Consensus 77 Ia~~i~~~l~ 86 (104)
..+.|.+++.
T Consensus 381 ~i~~l~~~~~ 390 (393)
T PRK05764 381 GLERIERFLE 390 (393)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 66
>PRK02948 cysteine desulfurase; Provisional
Probab=72.89 E-value=11 Score=29.50 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHhhcCceeccCC---CCCCC-----------CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 22 KGIDGSRVEKVLEAVHIAANKNT---VPGDV-----------SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 22 ~gi~g~~a~~~Le~~gI~vnkn~---lP~d~-----------~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.++++.++...|++.||.+.... -+... .+...+.|||+.... .+++|++.+.+.|.++++
T Consensus 299 ~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~----~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 299 KGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQ----TTKDQIDTTIHALETIGN 373 (381)
T ss_pred CCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCC----CCHHHHHHHHHHHHHHHH
Confidence 46778888888999999998532 11110 011135799996543 567999999998877654
No 67
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=72.60 E-value=18 Score=27.92 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=43.8
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhc-CceeccCCC--CC--C-CCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNTV--PG--D-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~-gI~vnkn~l--P~--d-~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.+++.+.+ .++++.++.+.|.+. ||.+..... +. + -+....+.|||+.... .+++|++.+.+.|.+
T Consensus 304 ~~~v~~~~--~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~----~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 304 VGVVSFTV--EGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYF----NTEEEIEKLLEALSE 375 (376)
T ss_pred CCeEEEEE--CCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCC----CCHHHHHHHHHHHhh
Confidence 45555555 467899999999887 999875321 10 0 0112346899996654 677899888887754
No 68
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=72.32 E-value=22 Score=28.10 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTV 89 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~ 89 (104)
+.-.+|+++. +..++.+.|.+.||.|.. + +.+|||+.. ..+||+.+.+.+.+++...+
T Consensus 300 ~~nf~~~~~~----~~~~~~~~l~~~GI~Vr~----~------~~~iRis~~-------~~~~~~~l~~al~~~~~~~~ 357 (366)
T PRK01533 300 QTNFIFLPVE----NGGEIYEACAHAGFIIRP----F------PNGVRITVG-------TREQNEGVISVLQQHFENKK 357 (366)
T ss_pred cCcEEEEeCC----CHHHHHHHHHHCCcEEcc----C------CCceEEeCC-------CHHHHHHHHHHHHHHHHhcc
Confidence 4557888873 567888999999999984 1 257999853 45899999888887765443
No 69
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=71.95 E-value=25 Score=27.38 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHH-HHHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRV-EKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a-~~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~ 79 (104)
|+.+.. .....+|+++.. +..+. ++.|+++||.+.. ++. .......+||+... +++++++.+
T Consensus 288 ~~~~~~--~~~~fl~~~~~~---~~~~l~~~ll~~~gv~v~p----g~~f~~~~~~~iRi~~~~-------~~~~~~l~~ 351 (360)
T PRK07392 288 GLTPLP--SAANFLLVQSQG---SALQLQEKLLQQHRILIRD----CLSFPELGDRYFRVAVRT-------EAENQRLLE 351 (360)
T ss_pred CcEECC--CCCCEEEEEcCC---CHHHHHHHHHhhCCEEEEe----CCCCCCCCCCEEEEEeCC-------HHHHHHHHH
Confidence 444443 334577888642 44444 4557899999873 331 11123579999432 456777777
Q ss_pred HHHHHHH
Q 034072 80 FFDAAVK 86 (104)
Q Consensus 80 ~i~~~l~ 86 (104)
.+.+++.
T Consensus 352 al~~~~~ 358 (360)
T PRK07392 352 ALAAILA 358 (360)
T ss_pred HHHHHhh
Confidence 7766554
No 70
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=71.72 E-value=21 Score=27.60 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=40.4
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
.-.+|+++. +..+..+.|++.||.|...... . ...+..+||+.. .++|++.+.+.+.++
T Consensus 297 ~~~~~~~~~----~~~~~~~~l~~~gI~v~~~~~f-~--~~~~~~iRis~~-------~~~~~~~l~~al~~~ 355 (356)
T PRK04870 297 ANFILVRVP----DAAAVFDGLKTRGVLVKNLSGM-H--PLLANCLRVTVG-------TPEENAQFLAALKAA 355 (356)
T ss_pred CeEEEEECC----CHHHHHHHHHHCCEEEEECCCC-C--CCCCCeEEEeCC-------CHHHHHHHHHHHHHh
Confidence 346788764 6788889999999999743221 1 112357999965 578888777776554
No 71
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=71.52 E-value=10 Score=29.87 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+.++.++.+.|++.||.+.....|. .+.||+....-+ +++|++.+.+.|.+++.
T Consensus 296 ~~~~~~~~~~L~~~gi~v~~~~~~~------~~~iRis~~~~~----t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 296 GISEQELYSKLVETGIRVGVVCFPT------GPFLRVNLHAFN----TEDEVDILVSVLATYLE 349 (370)
T ss_pred ChhHHHHHHHHHHCCeeEEeeCCCC------CCEEEEEcCCCC----CHHHHHHHHHHHHHHHH
Confidence 3467889999999999987543332 236999876554 56999999999988775
No 72
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=71.48 E-value=20 Score=27.75 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=38.1
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.+|+.+ . +..++.+.|++.||.|. ++. .+..|||+... .++|++++.+.+.++..
T Consensus 273 f~~~~~---~-~~~~~~~~l~~~gi~v~----~f~----~~~~iRis~~~------~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 273 FQWVRT---E-DAAALHEFLARRGILTR----LFE----QPASLRFGLPA------DEADWARLDQALLAYRK 327 (330)
T ss_pred EEEEec---C-CHHHHHHHHHHCCeEEE----ECC----CCCeEEEECCC------CHHHHHHHHHHHHHHHh
Confidence 455654 2 67889999999999995 222 13579999653 46788888877765443
No 73
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=71.39 E-value=22 Score=28.28 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=40.2
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcc-hhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT-PALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT-~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
+++.+.+. +++.++.+.|.+.||.+... .++.|||+. ...| +++|++.+.+.|.+++
T Consensus 348 ~~v~~~~~---~~~~~~~~~L~~~gi~v~~~---------~~~~iRiS~~~~~n----t~~did~l~~~l~~~~ 405 (406)
T TIGR01814 348 CQLSLTHP---VPGKAVFQALIKRGVIGDKR---------EPSVIRVAPVPLYN----TFVDVYDAVNVLEEIL 405 (406)
T ss_pred CeEEEEec---CCHHHHHHHHHHCCEEEecc---------CCCeEEEechhccC----CHHHHHHHHHHHHHHh
Confidence 45656543 57889999999999988521 125799996 3444 5589988888887654
No 74
>PRK06207 aspartate aminotransferase; Provisional
Probab=71.37 E-value=26 Score=28.00 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=42.0
Q ss_pred ceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-.+|+++.+.+++..+..+.| ++.||.+- |+.. .......+||+... .++++++--+.|.++++
T Consensus 336 ~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~----pG~~F~~~~~~~~Ris~~~------~~~~l~~al~rl~~~l~ 401 (405)
T PRK06207 336 SYLFPRLPRLAVSLHDFVKILRLQAGVIVT----PGTEFSPHTADSIRLNFSQ------DHAAAVAAAERIAQLIE 401 (405)
T ss_pred EEEEEeCcccCCCHHHHHHHHHHhcCEEEe----CchHhCCCCCCeEEEEecC------CHHHHHHHHHHHHHHHH
Confidence 367899876566777777777 58999886 3331 11123579999652 46777776666666664
No 75
>PRK07777 aminotransferase; Validated
Probab=71.23 E-value=25 Score=27.62 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=38.5
Q ss_pred CceeeEeccCCC-CCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKG-IDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 12 ~Hlvlvdl~~~g-i~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
+..+|+++++.+ .++.+..+.| ++.||.|..-..=+...+.....+||+.. ..++++++--+.|.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~------~~~~~l~~~l~~l~~ 382 (387)
T PRK07777 315 TYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC------KRDDTLDEAIRRLRA 382 (387)
T ss_pred ceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence 467777876433 3667766666 67899887432101111112357999864 246777666665544
No 76
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=71.11 E-value=16 Score=29.04 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=37.6
Q ss_pred CCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 24 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 24 i~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
.+..+..+.|.+.||.+... ....|||..+ ..++++|++++.+.+.++|
T Consensus 352 ~~~~~l~~~l~~~Gv~v~~~---------~~~~lRi~p~----l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 352 RTAWDLCLKLKEKGLLAKPT---------HGNIIRLAPP----LVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred hHHHHHHHHHHhCCEEEEec---------CCCEEEEeCC----ccCCHHHHHHHHHHHHHHh
Confidence 35677888888999998532 1356999975 4578999999999887765
No 77
>PLN02955 8-amino-7-oxononanoate synthase
Probab=70.64 E-value=18 Score=30.72 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=51.3
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.+|++.|-+.... ...++.+.|.+.||.|+.-.-|.-+. ..+.|||...+ ..+++|++.+.+.+.++..
T Consensus 392 ~sPI~pI~ig~~~-~a~~~~~~L~~~Gi~v~~i~yPtVP~--g~~rLRi~lsA----~Ht~edId~lv~~L~~~~~ 460 (476)
T PLN02955 392 SSPIISLVVGNQE-KALKASRYLLKSGFHVMAIRPPTVPP--NSCRLRVTLSA----AHTTEDVKKLITALSSCLD 460 (476)
T ss_pred CCCEEEEEeCCHH-HHHHHHHHHHHCCCEEEEECCCCCCC--CCceEEEeeCC----CCCHHHHHHHHHHHHHHHh
Confidence 4788777664433 66778899999999999877776632 23579998654 5778999999998877643
No 78
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=70.52 E-value=23 Score=27.30 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=41.0
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
...+++.+.+. +..++.+.|.+.||.+.... .+..||++.... .+++|++.+.+.|.+
T Consensus 315 ~~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~----~t~edid~l~~~L~~ 372 (373)
T TIGR03812 315 PVLNIVAFEVD----DPEEVRKKLRDRGWYVSVTR--------CPKALRIVVMPH----VTREHIEEFLEDLKE 372 (373)
T ss_pred CCceEEEEEeC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECC----CCHHHHHHHHHHHhh
Confidence 35677777543 35688889999999986542 135799987653 567999888877753
No 79
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=70.15 E-value=25 Score=27.41 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHhhcCceeccCC--CCCCC------------CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 23 GIDGSRVEKVLEAVHIAANKNT--VPGDV------------SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI~vnkn~--lP~d~------------~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
++++.++.+.|++.||.+..-. -+... ....++.||++....|++ +|+.++.+.|.+++..
T Consensus 298 ~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~----~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 298 YIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTE----EDIDYVLEVLPPIIAR 372 (379)
T ss_pred CCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCH----HHHHHHHHHHHHHHHH
Confidence 5788999999999999987421 11111 011246899998777655 8999999999887754
No 80
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=69.78 E-value=31 Score=27.12 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=39.8
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
+| +|+++. +..++.+.|.+.||.|....- + .. ....+||+.. .++||+.+.+.+.++
T Consensus 304 ~f-~~~~~~----~~~~~~~~l~~~gI~v~~~~~-~--~~-~~~~~Ris~~-------~~~~~~~l~~al~~~ 360 (364)
T PRK04781 304 NF-LLVRFD----DAEAAFQALLAAGVVVRDQRA-A--PR-LSDALRITLG-------TPEQNDRVLAALQRT 360 (364)
T ss_pred cE-EEEEcC----CHHHHHHHHHHCCeEEeeCCC-C--CC-CCCeEEEeCC-------CHHHHHHHHHHHHHH
Confidence 44 678874 567888999999999975321 1 11 1356999964 478998888877653
No 81
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=69.61 E-value=15 Score=30.36 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=42.4
Q ss_pred CCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCC-C-CCCCCCeeeEcchhHhhcCCCHHHHHHHH
Q 034072 9 GTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-V-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 9 gTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d-~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia 78 (104)
.-|-=++++|+....---..+++-||.+||.+|+. |.+ . .....+||||..+.- --++++++.+.|-
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~--~p~V~I~kk~~gGI~i~~t~~-l~~~d~~~ir~iL 208 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKR--PPDVTIKKKESGGIRINGTGP-LTHLDEDTVRAIL 208 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCC--CCceEEEEeccCCEEEecccc-cccCCHHHHHHHH
Confidence 34555566776543312458899999999999986 444 1 122357999975433 2257777776654
No 82
>PRK07683 aminotransferase A; Validated
Probab=68.62 E-value=36 Score=26.86 Aligned_cols=66 Identities=9% Similarity=0.108 Sum_probs=42.1
Q ss_pred CceeeEeccCCCCCHHHHH-HHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~-~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+..+|+.+...+++..+.. ++|++.||.+-.... +. ......+||+.. ..++++++--+.|.+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~-f~--~~~~~~~Ri~~~------~~~~~~~~al~~l~~~l~ 382 (387)
T PRK07683 316 AFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSA-FS--EYGEGYVRLSYA------YSIETLKEGLDRLEAFLQ 382 (387)
T ss_pred eEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchh-hC--CCCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 4456777665566665554 567999998864322 11 112357999864 357888777777776654
No 83
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=68.00 E-value=29 Score=29.41 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=57.5
Q ss_pred CCeeeeCCCCCceeeEeccCC-------CCCHH-HHHHHHhhcCceecc------CCCCCCCCCCC--CCeeeEcchhHh
Q 034072 2 GYELVSGGTENHLVLVNLKNK-------GIDGS-RVEKVLEAVHIAANK------NTVPGDVSAMV--PGGIRMGTPALT 65 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~-------gi~g~-~a~~~Le~~gI~vnk------n~lP~d~~~~~--~sglRlGT~a~T 65 (104)
|++|+. .+.+|+|+||.+.+ ...+. -+.......||+.-. -.-|....... .-=+||- +-
T Consensus 329 Gvpv~~-p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rla---ip 404 (450)
T TIGR02618 329 GVPIVE-PVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLT---IP 404 (450)
T ss_pred CCcccC-CCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeec---cc
Confidence 777864 57779999998653 23444 345555677887432 12222211111 1237764 66
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 034072 66 SRGFVEEDFAKVAYFFDAAVKLTVKIK 92 (104)
Q Consensus 66 ~RG~~e~dm~~Ia~~i~~~l~~~~~~~ 92 (104)
||=++.++|..||+-+..+.++...++
T Consensus 405 rr~yt~~h~~~v~~~~~~~~~~~~~~~ 431 (450)
T TIGR02618 405 RRVYTYAHMDVVADGIIKLYKHRDDIR 431 (450)
T ss_pred cccccHhHHHHHHHHHHHHHhhHhhcC
Confidence 999999999999999999998887773
No 84
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=67.34 E-value=43 Score=26.06 Aligned_cols=63 Identities=5% Similarity=0.051 Sum_probs=42.2
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+.-.+|+++.. +..+..+.|.+.||.+...... .......|||+.. +++|++.+-+.+.++++
T Consensus 292 ~~~~~~~~~~~---~~~~~~~~l~~~gI~v~~~~~f---~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 292 RANYLFLRCER---PDIDLQRALLTQRILIRSCANY---PGLDSRYYRVAIR-------SAAENERLLAALRNVLT 354 (356)
T ss_pred CCcEEEEEcCC---ChHHHHHHHHHCCeEEEECCCC---CCCCCCEEEEEEc-------CHHHHHHHHHHHHHHHc
Confidence 45567887642 4567778888899998754321 1112357999963 67899988888877654
No 85
>PRK07682 hypothetical protein; Validated
Probab=67.30 E-value=40 Score=26.26 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=41.5
Q ss_pred CceeeEeccCCCCCHHHHHHH-HhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~-Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+..+|+++.+.+++..+..+. |++.||.+..-.. +.. .....+||+.. ..++++++--+.|.++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~-f~~--~~~~~iRis~~------~~~~~l~~~l~~l~~~l~ 375 (378)
T PRK07682 309 AFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSV-FGE--SGEGFIRCSYA------TSLEQLQEAMKRMKRFVE 375 (378)
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchh-hCc--CCCCeEEEEeC------CCHHHHHHHHHHHHHHHh
Confidence 345677776656677766655 5688999875322 111 11367999854 246777777777766654
No 86
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=66.86 E-value=11 Score=30.18 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=47.0
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhc-CceeccCC---CCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~-gI~vnkn~---lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
.++.+.+. ++++.++.+.|.+. ||.+..-. -|.-..-.....||++....++ ++|++.+.+.|.+++...
T Consensus 346 ~~v~~~~~--~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt----~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 346 ALCAFNVE--GIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT----KEEVDAFIHALKDTIAFF 419 (424)
T ss_pred cEEEEEEC--CcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC----HHHHHHHHHHHHHHHHHH
Confidence 45555543 57888999999887 99877421 1100000012469999877654 499999999998887654
Q ss_pred HH
Q 034072 89 VK 90 (104)
Q Consensus 89 ~~ 90 (104)
.+
T Consensus 420 ~~ 421 (424)
T PLN02855 420 SS 421 (424)
T ss_pred Hh
Confidence 43
No 87
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=66.83 E-value=17 Score=27.50 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
...++++++.+ +.+..+..+.|.+.||.+.....|+... ....|||+.... .+++||+++.+.|
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~~~--~~~~iRis~~~~----~~~~~i~~~l~~l 359 (360)
T TIGR00858 296 CTPIVPVIIGD-NASALALAEELQQQGIFVGAIRPPTVPA--GTSRLRLTLSAA----HTPGDIDRLAEAL 359 (360)
T ss_pred CCCEEEEEeCC-HHHHHHHHHHHHHCCeeEeeeCCCCCCC--CCceEEEEEcCC----CCHHHHHHHHHhh
Confidence 34578887642 3467788899999999998544443211 124699997653 2468888776654
No 88
>PRK08636 aspartate aminotransferase; Provisional
Probab=66.52 E-value=46 Score=26.40 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=40.7
Q ss_pred eeeEeccCC--CCCHHHH-HHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNK--GIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 14 lvlvdl~~~--gi~g~~a-~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
.+|+++.+. +++..+. ++.|++.||.+..-.. +. ......+||+.. ..++++++..+.|.+++..
T Consensus 333 ~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~-f~--~~~~~~iRi~~~------~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 333 FVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIG-FG--EYGDEYVRIALI------ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred EEEEECCCccCCCCHHHHHHHHHHhCCEEEecchh-hC--cCCCCeEEEEec------CCHHHHHHHHHHHHHHHHh
Confidence 678887542 2344555 4567789998864321 11 111357999863 3578888888888777753
No 89
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=66.34 E-value=12 Score=31.20 Aligned_cols=63 Identities=21% Similarity=0.363 Sum_probs=41.0
Q ss_pred CCceeeEeccCCCCCH-HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDG-SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g-~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia 78 (104)
-|-|+|+|+|..+++. .-.+-.|+++++.+|.=..-|..+ .+-+|+= .-|.|-.-++-++.|+
T Consensus 318 gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g---~gf~RlN--~acpr~~L~eal~ri~ 381 (388)
T COG1168 318 GTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEG---SGFVRLN--FACPRAILEEALERLK 381 (388)
T ss_pred CceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCC---CceEEEe--cCCCHHHHHHHHHHHH
Confidence 3579999999999996 777788999999999654333322 1237764 2334444444454444
No 90
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=65.91 E-value=39 Score=26.24 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=36.7
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 82 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~ 82 (104)
-.+|+++. +..++.+.|++.||.+... +.. ..+..+||+.. .++||+.+.+.+.
T Consensus 297 ~f~~~~~~----~~~~~~~~l~~~gv~v~~~----~~~-~~~~~lRis~~-------~~e~~~~l~~al~ 350 (354)
T PRK04635 297 NYVLAKFD----DVDAVFKALWDAGIVARAY----KDP-RLANCIRFSFS-------NRAETDKLIGLIR 350 (354)
T ss_pred cEEEEECC----CHHHHHHHHHHCCEEEEEC----CCC-CCCCeEEEEeC-------CHHHHHHHHHHHH
Confidence 46788764 5678888999999999632 111 12346999952 5788887776653
No 91
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=65.34 E-value=42 Score=26.36 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=41.9
Q ss_pred eeeEeccC-CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 14 lvlvdl~~-~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
++++.+.. .+.+..+..+.|.+.||.+.. .. ...|||+.+ -..+++|+++..+.|.++|..
T Consensus 334 ~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~-----~~~lRi~~~----~~~~~~~i~~~l~~l~~~l~~ 395 (400)
T PTZ00125 334 LNAIVFDHSDGVNAWDLCLKLKENGLLAKP----TH-----DNIIRFAPP----LVITKEQLDQALEIIKKVLKS 395 (400)
T ss_pred EEEEEEccCcchHHHHHHHHHHHCCeEEee----cC-----CCEEEEECC----ccCCHHHHHHHHHHHHHHHHH
Confidence 44554432 234566677778888999853 22 356999966 236789999999999887763
No 92
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=65.29 E-value=37 Score=26.28 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=40.0
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-.+|+++. +..+..+.|++.||.|......+ .+..+||+.. .+++|++..+.|.+++.
T Consensus 299 ~f~~~~~~----~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRls~~-------~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 299 NFVLAEVG----DASAVAEAAQERGVIVRDCTSFG-----LPECIRITCG-------TREETERAVEVLNEVLA 356 (357)
T ss_pred CEEEEECC----CHHHHHHHHHHCCEEEEECccCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHhc
Confidence 45677763 56777888999999988543322 1357999842 35788888888777653
No 93
>PRK08960 hypothetical protein; Provisional
Probab=65.17 E-value=41 Score=26.44 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=38.9
Q ss_pred CceeeEeccCCCCCHHHHHH-HHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEK-VLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~-~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
.-.+|+++...+.+..+..+ .|++.||.+..-..-+.. .....+||+... ..+++++..+.|.+++
T Consensus 319 ~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~iRi~~~~------~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 319 AFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRH--QAGQHVRFAYTQ------SLPRLQEAVERIARGL 385 (387)
T ss_pred eEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCC--CCCCeEEEEecC------CHHHHHHHHHHHHHHH
Confidence 45678887654456666654 567899998743221111 123579999653 3566666555555544
No 94
>PRK06836 aspartate aminotransferase; Provisional
Probab=65.07 E-value=44 Score=26.41 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=42.0
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+-.+|+++.. .+..+..+.|++.||.+...... . .+..+||+.. ..+++|++--+.|.++++
T Consensus 329 g~~~~~~~~~--~~~~~~~~~l~~~gv~v~~g~~f-~----~~~~iRi~~~------~~~~~~~~~i~~l~~~l~ 390 (394)
T PRK06836 329 AFYLFPKSPE--EDDVAFCEKAKKHNLLLVPGSGF-G----CPGYFRLSYC------VDTETIERSLPAFEKLAK 390 (394)
T ss_pred eEEEEEeCCC--CCHHHHHHHHHhCCEEEECchhc-C----CCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 4445666543 37888888999999988643211 1 1357999964 358888887777777764
No 95
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=64.81 E-value=16 Score=26.27 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
|.+-.=|.+.|+++|+.++....-.|- ||+ -=-.+-++++|+++++..|.++|..-
T Consensus 75 GCp~~Catk~l~~AGv~~D~~l~itdl------Gik----K~~~~D~~~edv~kv~~~i~e~l~~~ 130 (135)
T COG4273 75 GCPLRCATKCLAEAGVQADVHLTITDL------GIK----KTYPSDCKDEDVEKVARTIKEALTIK 130 (135)
T ss_pred CChHHHHHHHHHHhccceeEEEEehhc------ccc----cCCCCCCCHHHHHHHHHHHHHHhhhc
Confidence 667778899999999999977554442 221 11134689999999999999988754
No 96
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=64.68 E-value=41 Score=28.56 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=57.5
Q ss_pred CCCeeeeCCCCCceeeEeccCC-------CCCHH-HHHHHHhhcCceecc------CCCCCCCCCCC--CCeeeEcchhH
Q 034072 1 MGYELVSGGTENHLVLVNLKNK-------GIDGS-RVEKVLEAVHIAANK------NTVPGDVSAMV--PGGIRMGTPAL 64 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~-------gi~g~-~a~~~Le~~gI~vnk------n~lP~d~~~~~--~sglRlGT~a~ 64 (104)
.|++|+. .+-.|.|+||.+.+ ...+. -+..+....||+.-. -.-|....... .-=+||- +
T Consensus 335 ~Gvpv~~-p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rla---i 410 (460)
T PRK13237 335 AGVPIVE-PVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLT---I 410 (460)
T ss_pred CCCceec-CCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeec---c
Confidence 4888886 24449999997653 23444 345556678887531 12222211111 1237764 6
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 034072 65 TSRGFVEEDFAKVAYFFDAAVKLTVKIK 92 (104)
Q Consensus 65 T~RG~~e~dm~~Ia~~i~~~l~~~~~~~ 92 (104)
-||=++.++|+.||+-+..+.++...++
T Consensus 411 prr~yt~~h~~~v~~~~~~~~~~~~~~~ 438 (460)
T PRK13237 411 PRRVYTYAHMDVVADSVIKLYKHREDIR 438 (460)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHhhcC
Confidence 6999999999999999999998887773
No 97
>PRK12566 glycine dehydrogenase; Provisional
Probab=64.33 E-value=39 Score=31.29 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=53.0
Q ss_pred ceeeEeccC----CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKN----KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 13 Hlvlvdl~~----~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
|-+.+|+++ .|++..++.++|.+.||-+-....|. ..++||-..+..++ +|+..+++.+..+..-.
T Consensus 808 hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv------~~~LmIepTE~esk----eEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 808 HECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPV------PGTLMVEPTESESK----AELDRFVEAMLSIRAEI 877 (954)
T ss_pred eEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeecc------CCEEEEEeeeeCCH----HHHHHHHHHHHHHHHHH
Confidence 788888873 46788889999999999877643342 46799998777654 99999999988777766
Q ss_pred HHH
Q 034072 89 VKI 91 (104)
Q Consensus 89 ~~~ 91 (104)
.++
T Consensus 878 ~~v 880 (954)
T PRK12566 878 GKV 880 (954)
T ss_pred HHH
Confidence 666
No 98
>PRK07337 aminotransferase; Validated
Probab=64.31 E-value=51 Score=25.87 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=39.8
Q ss_pred CCCceeeEeccCC----CCCHHHH-HHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNK----GIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 10 Td~Hlvlvdl~~~----gi~g~~a-~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
.....+|++++.. .++..+. ++.|++.||.+..-..-+... ....+||+... .++++++--+.|.++
T Consensus 315 ~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~--~~~~~Ri~~~~------~~~~l~~~l~rl~~~ 386 (388)
T PRK07337 315 DGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHA--PRDYIRLSYAT------SMSRLEEAVARLGKL 386 (388)
T ss_pred CeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC--CCCEEEEEecC------CHHHHHHHHHHHHHH
Confidence 4456789998653 2466664 466889999986422112111 13579999642 356666655555543
No 99
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=64.21 E-value=11 Score=29.20 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=45.6
Q ss_pred CCeeeeC-CCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCC---CCCCCCCeeeEcchhHhhcCCCHHHHHHH
Q 034072 2 GYELVSG-GTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD---VSAMVPGGIRMGTPALTSRGFVEEDFAKV 77 (104)
Q Consensus 2 G~~vv~g-gTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d---~~~~~~sglRlGT~a~T~RG~~e~dm~~I 77 (104)
|++++.. ..+.+++.+++. +.+..++.+.|.+.||.+........ ...-.+..||+.....+ +++||+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~----t~~di~~~ 369 (373)
T cd06453 296 GVRVYGDAEDRAGVVSFNLE--GIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYN----TEEEIDAL 369 (373)
T ss_pred CeEEeCCccccCCeEEEEEC--CcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCC----CHHHHHHH
Confidence 4555532 245677777764 46888999999999998864321110 00112357999977553 45788877
Q ss_pred HHH
Q 034072 78 AYF 80 (104)
Q Consensus 78 a~~ 80 (104)
++.
T Consensus 370 ~~~ 372 (373)
T cd06453 370 VEA 372 (373)
T ss_pred Hhh
Confidence 664
No 100
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=63.75 E-value=17 Score=28.77 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCC---CCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~---lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia 78 (104)
|+++++..--.+++.+.+. +.++.++.+.|++.||.+..-. .|.-...-.+..||++....+ +++|++.+.
T Consensus 322 ~~~~~~~~~~~~iv~~~~~--~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~yn----t~~did~l~ 395 (406)
T PRK09295 322 DLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYN----THEEVDRLV 395 (406)
T ss_pred CEEEeCCCCCceEEEEEEC--CcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCC----CHHHHHHHH
Confidence 4455542112455655543 5688899999999999986421 111000001246999977554 568999888
Q ss_pred HHHHHHH
Q 034072 79 YFFDAAV 85 (104)
Q Consensus 79 ~~i~~~l 85 (104)
+.|.++.
T Consensus 396 ~~l~~i~ 402 (406)
T PRK09295 396 AGLQRIH 402 (406)
T ss_pred HHHHHHH
Confidence 8887653
No 101
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=63.48 E-value=45 Score=27.44 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=43.9
Q ss_pred ceeeEeccCCC----CC-H-HHHHHHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKG----ID-G-SRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 13 Hlvlvdl~~~g----i~-g-~~a~~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
=.+|+|+++.- .+ . +-+++.++++||.+. ||.. ....++-+||.... +.++++++--+.|.+++
T Consensus 365 ~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~----pG~~f~~~~~g~fRi~fa~-----~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 365 LFCWMNLSPLLETPTREGELALWDSILREVKLNIS----PGSSCHCSEPGWFRVCFAN-----MSEDTLEVALKRIHRFM 435 (447)
T ss_pred EEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEc----CccccCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHH
Confidence 36789985421 01 1 224466778999876 4442 22245779998543 45788888888888888
Q ss_pred HHHHHH
Q 034072 86 KLTVKI 91 (104)
Q Consensus 86 ~~~~~~ 91 (104)
..-+..
T Consensus 436 ~~~~~~ 441 (447)
T PLN02607 436 DRRKTA 441 (447)
T ss_pred HHHHhh
Confidence 755554
No 102
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=62.83 E-value=18 Score=27.50 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=44.9
Q ss_pred CCeeeeCCCCCceeeEeccCC---CCCHHHHHHHHhhcCce-eccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNK---GIDGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKV 77 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~---gi~g~~a~~~Le~~gI~-vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~I 77 (104)
|+.++ +..+..++.+.+.+. +++..++.+.|.+.|+. +.....+ ....+|++..... .+++|++++
T Consensus 269 ~~~~~-~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~------~~~~lRis~~~~~---~t~~di~~l 338 (345)
T cd06450 269 GFELL-GEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLG------GPNVLRFVVTNPL---TTRDDADAL 338 (345)
T ss_pred CeEEe-cCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEEC------CeEEEEEEecCCC---CCHHHHHHH
Confidence 34444 335677888876543 46677888888888654 4322222 2357999865431 366899888
Q ss_pred HHHHHH
Q 034072 78 AYFFDA 83 (104)
Q Consensus 78 a~~i~~ 83 (104)
.+.|.+
T Consensus 339 ~~~l~~ 344 (345)
T cd06450 339 LEDIER 344 (345)
T ss_pred HHHHHh
Confidence 877654
No 103
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=62.68 E-value=35 Score=27.11 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=43.8
Q ss_pred EeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 17 VNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 17 vdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+.+ +.|++..++.+.|++.||.+... ..+ +...-+|||.... .+++|++.+.+.|.++++
T Consensus 300 v~~-~~g~~~~~v~~~L~~~gI~i~~~---~~~--l~~~~vRis~~~~----~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 300 IDF-VDDIDAATVAKILRANGIVDTEP---YRK--LGRNQLRVAMFPA----IDPDDVEALTECVDWVVE 359 (361)
T ss_pred EEC-CCccCHHHHHHHHHHCCCeeccC---ccc--cCCCcEEEEcCCC----CCHHHHHHHHHHHHHHHh
Confidence 455 46889999999999999998432 111 1234599998664 557999999999888765
No 104
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=62.24 E-value=64 Score=25.07 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=35.4
Q ss_pred CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 25 ~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
+..+..+.|.+.||.+... . .+..+||+.. .++||+.+.+.+.+++..
T Consensus 317 ~~~~~~~~l~~~Gv~v~~~----~----~~~~iRi~~~-------~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 317 DRHAVWQGLLDRGVLIRDV----G----IPGWLRVTIG-------TPEENDAFLAALAEVLAT 364 (368)
T ss_pred CHHHHHHHHHHCCEEEEeC----C----CCCeEEEecC-------CHHHHHHHHHHHHHHHHH
Confidence 5678888899999998632 1 1357999954 467888888888777653
No 105
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=61.96 E-value=66 Score=25.16 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=38.9
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
-.+|+++. .+..+..+.|.+.||.+-. ++... ....+||+.. .+++++.+.+.+.+++
T Consensus 312 ~fl~~~~~---~~~~~l~~~l~~~gi~v~p----~~~~~-~~~~iRi~~~-------~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 312 NFLFFDAR---RPASAVAEALLRQGVIVKP----WKQPG-FETFIRVSIG-------SPEENDHFVAALDKVL 369 (371)
T ss_pred CEEEEeCC---CCHHHHHHHHHHCCeEEec----CCCCC-CCCeEEEEcC-------CHHHHHHHHHHHHHHh
Confidence 35688864 2567778888888998864 33211 2467999965 3677888877776543
No 106
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=61.35 E-value=34 Score=26.69 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=41.5
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
.+++++++.+ +...+.+.|.+.||.+-. .. ...|||..+.. .+++|++++.+.|.++|
T Consensus 320 g~~~~i~~~~---~~~~~~~~l~~~gv~v~~----~g-----~~~lRi~p~~~----~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 320 GLMIGIECTE---EVAPVIEQLREEGLLVLS----AG-----PNVIRLLPPLV----VTKEELDQAVYLLKKVL 377 (377)
T ss_pred ceEEEEEecc---hHHHHHHHHHHCCeEEec----CC-----CCEEEEECCcc----cCHHHHHHHHHHHHHhC
Confidence 4688888754 267788889999998842 21 24699985433 56799999988887653
No 107
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=60.81 E-value=63 Score=25.18 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=39.2
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
++|+++. +..+..+.|.+.||.|.. +. .+..|||+. +-+++|++.+.+.+.+++...
T Consensus 278 f~~~~~~----~~~~l~~~l~~~GI~vr~----~~----~~~~lRisi------~~~~~e~~~l~~al~~~~~~~ 334 (339)
T PRK06959 278 FSWTDDP----RAAALHAALARRGIWTRY----FA----PPPSVRFGL------PADEAEWQRLEDALAECVPTL 334 (339)
T ss_pred EEEEeCC----CHHHHHHHHHhCCeEEEE----CC----CCCeEEEEC------CCCHHHHHHHHHHHHHHHHHH
Confidence 4567753 567888889999999952 11 124799993 124568888888887766643
No 108
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=60.69 E-value=33 Score=26.99 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=44.0
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
..++++.+.. . ......+.|.+.||.+... .+..|||..+.. .+++|++++.+.+.+++...
T Consensus 334 g~~~~i~~~~-~-~~~~~~~~l~~~Gv~~~~~---------~~~~iR~~p~~~----~t~~~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 334 GLLLGIVLTA-P-VAKAVEAAAREAGFLVNAV---------APDVIRLAPPLI----ITDAQVDAFVAALPAILDAA 395 (398)
T ss_pred cEEEEEEEec-c-HHHHHHHHHHHCCeEEeec---------CCCEEEEECCCc----CCHHHHHHHHHHHHHHHHhc
Confidence 3466676632 2 4567778888899998653 124699996553 35799999999999888643
No 109
>PRK08175 aminotransferase; Validated
Probab=60.38 E-value=70 Score=25.23 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=38.7
Q ss_pred ceeeEeccCC--CCCHHHHH-HHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNK--GIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~--gi~g~~a~-~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
=.+|+++... .++..+.. +.+++.||.|......+.. ....|||+.. -.+++|++.-+.|.+++.
T Consensus 321 ~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~---~~~~lRis~~------~~~~~~~~al~~l~~~l~ 388 (395)
T PRK08175 321 MYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDY---GDTHVRFALI------ENRDRIRQAIRGIKAMFR 388 (395)
T ss_pred EEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcC---CCCeEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence 3678887542 22455554 5667899999753322111 2357999852 256777766666665553
No 110
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=59.50 E-value=29 Score=28.72 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=48.5
Q ss_pred CCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 8 GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 8 ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
..+++|.+-+-+.+.. ...++...|.+.||.+..-.-|.-+. .++.||+-..+ ..+++|++.+++.+.++
T Consensus 318 ~~s~s~I~pv~~gd~~-~a~~~s~~l~~~Gi~v~~i~~PTVp~--gtarlRi~lta----~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 318 LPSESPIIPVILGDEE-RALEASRALLEEGIYVSAIRPPTVPK--GTARLRITLTA----AHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCCCCeeeeEeCCHH-HHHHHHHHHHHCCeeEeeecCCCCCC--CcceEEEEecC----CCCHHHHHHHHHHHHhh
Confidence 5677888766555444 35555566666699999776666542 24789998554 46889999998887654
No 111
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=59.00 E-value=81 Score=24.28 Aligned_cols=60 Identities=10% Similarity=-0.032 Sum_probs=38.9
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
.-.+|+.+. +..+..+.|.+.||.+..... +.. .....+||+.. .++||+.+-+.+.+++
T Consensus 272 g~f~~~~~~----~~~~~~~~l~~~gi~v~~~~~-f~~--~~~~~iRis~~-------~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 272 ANFITFMIP----DAHDFYSYLLKNGILVRLLDD-YEC--LGEQYIRIAIR-------RRSFNIKLVNALRNFL 331 (332)
T ss_pred ceEEEEEcC----CHHHHHHHHHHCCeEEEECCC-CCC--CCCCEEEEEeC-------CHHHHHHHHHHHHHHh
Confidence 335777763 567777888889999874322 111 11357999953 4578888887776654
No 112
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=58.97 E-value=9 Score=32.00 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=18.0
Q ss_pred cCCCCCHHHHHHHHhhcCceeccC
Q 034072 20 KNKGIDGSRVEKVLEAVHIAANKN 43 (104)
Q Consensus 20 ~~~gi~g~~a~~~Le~~gI~vnkn 43 (104)
+..|++|..+++.|++.||.+.+.
T Consensus 377 ~~~Gi~g~~~~~~L~~~~I~~Ek~ 400 (417)
T PF01276_consen 377 SELGIPGYIVEKYLREHGIQVEKT 400 (417)
T ss_dssp -SS---HHHHHHHHHHTTEE-SEE
T ss_pred cccCCCHHHHHHHHHHcCCEEEec
Confidence 678999999999999999999986
No 113
>PRK06855 aminotransferase; Validated
Probab=58.42 E-value=55 Score=26.49 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
..+...|++.||.+. |++.=.....++||+... ..+++|++-.+.|.+++.
T Consensus 378 ~~~~~l~~~~gV~v~----PG~~F~~~~~~~Rls~~~-----~~~~~i~~~~~~l~~~~~ 428 (433)
T PRK06855 378 RFVYYLLASTGICVV----PLSSFCTELNGFRVTLLE-----RDEEKFEWIYQTLAEKIE 428 (433)
T ss_pred HHHHHHHHHcCEEEe----cCCcCCCCCCceEEEECC-----CcHHHHHHHHHHHHHHHH
Confidence 344567889999875 554211123579999654 367888888888888775
No 114
>PRK06348 aspartate aminotransferase; Provisional
Probab=58.17 E-value=65 Score=25.30 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=36.7
Q ss_pred CceeeEeccCCCCCHHHHHHH-HhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~-Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
+-.+|+++...+++..+..+. +++.||.+..-..-+.. ....+||+.. ..++++++-.+.|
T Consensus 318 g~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~---~~~~iRi~~~------~~~~~l~~al~~l 379 (384)
T PRK06348 318 SIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGES---GEGYIRLACT------VGIEVLEEAFNRI 379 (384)
T ss_pred eEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccC---CCCeEEEEec------CCHHHHHHHHHHH
Confidence 335688876556777765554 57899998743221111 2468999962 2456665555544
No 115
>PRK07505 hypothetical protein; Provisional
Probab=57.83 E-value=31 Score=27.35 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
..++.+.|.+.||.+.....|..+ .....|||..+.. .+++|++++.+.|.+++..
T Consensus 344 ~~~~~~~l~~~Gi~v~~~~~p~~~--~~~~~lRi~~~~~----~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 344 AIKAAKQLLDRGFYTSPVFFPVVA--KGRAGLRIMFRAS----HTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred HHHHHHHHHHCCCeEeeecCCCCC--CCCceEEEecCcc----CCHHHHHHHHHHHHHHHHh
Confidence 566778888899999865444321 1125799986544 4669999999999888754
No 116
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=57.64 E-value=53 Score=25.88 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=43.2
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
...++.+++.+...+..+..+.|.+.||.+... ....|||..+.. .+++|+++..+.+.+++.
T Consensus 338 ~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~---------~~~~lR~~p~~~----~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 338 RGLMLAVELEPEAGGARQYCEALKERGLLAKDT---------HDHTIRLAPPLV----ITREQVDWALEQIAKVLA 400 (401)
T ss_pred cceEEEEEEecCchhHHHHHHHHHHCCeEEecC---------CCCEEEEeCCcc----cCHHHHHHHHHHHHHHhh
Confidence 355666665443335677888888889998521 124799986543 578999999988887663
No 117
>PRK05367 glycine dehydrogenase; Provisional
Probab=56.79 E-value=60 Score=29.90 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=53.8
Q ss_pred CCCCceeeEeccCC----CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 9 GTENHLVLVNLKNK----GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 9 gTd~Hlvlvdl~~~----gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
+.--|-+++|+++. |++..++.++|.+.||.+-....|. ...+||-..+.++ .+|+..+++.+..+
T Consensus 803 ~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv------~~~l~i~ptE~~s----~~elDr~~~al~~i 872 (954)
T PRK05367 803 GRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPV------AGTLMVEPTESES----KAELDRFCDAMIAI 872 (954)
T ss_pred CCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCcc------CCEEEEEeeecCC----HHHHHHHHHHHHHH
Confidence 35578899998642 5778999999999999887643332 3579998888554 48999888888776
Q ss_pred HHHHHHH
Q 034072 85 VKLTVKI 91 (104)
Q Consensus 85 l~~~~~~ 91 (104)
...+.++
T Consensus 873 ~~e~~~~ 879 (954)
T PRK05367 873 RAEIDEV 879 (954)
T ss_pred HHHHHHh
Confidence 6655554
No 118
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=56.38 E-value=50 Score=30.66 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=52.5
Q ss_pred CceeeEeccC----CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKN----KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 12 ~Hlvlvdl~~----~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
=|-+++|+++ .|++..++.++|.+.||-.-....| .+.++||-..+..+ .+|+...++.|..+...
T Consensus 838 ~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~p------v~~~lmiepTE~~s----keelDrf~~al~~i~~e 907 (993)
T PLN02414 838 AHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWP------VPGTLMIEPTESES----KAELDRFCDALISIREE 907 (993)
T ss_pred eeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccc------cCCEEEEEeeeeCC----HHHHHHHHHHHHHHHHH
Confidence 4788889873 3578899999999999987763333 24679999777655 48999999888777666
Q ss_pred HHHH
Q 034072 88 TVKI 91 (104)
Q Consensus 88 ~~~~ 91 (104)
+.++
T Consensus 908 ~~~~ 911 (993)
T PLN02414 908 IADI 911 (993)
T ss_pred HHHH
Confidence 6555
No 119
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=55.77 E-value=45 Score=26.21 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=44.4
Q ss_pred ceeeEeccC-CCCCHHHHHHHHhhcCceeccCCCCCCCCCC---------CC-------CeeeEcchhHhhcCCCHHHHH
Q 034072 13 HLVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAM---------VP-------GGIRMGTPALTSRGFVEEDFA 75 (104)
Q Consensus 13 Hlvlvdl~~-~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~---------~~-------sglRlGT~a~T~RG~~e~dm~ 75 (104)
|+..+-+.. .+++..+..+.|.+.||.+.....|....+. .| ..|+|.. --.++++||+
T Consensus 295 ~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~----~~~l~~~dv~ 370 (380)
T TIGR03588 295 HLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPL----HPALTLEQQQ 370 (380)
T ss_pred EEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCC----CCCCCHHHHH
Confidence 555554433 5678999999999999988755444221000 01 3344442 2357899999
Q ss_pred HHHHHHHHHH
Q 034072 76 KVAYFFDAAV 85 (104)
Q Consensus 76 ~Ia~~i~~~l 85 (104)
.|.+.|.++|
T Consensus 371 ~i~~~l~~~~ 380 (380)
T TIGR03588 371 RVVETLRKVL 380 (380)
T ss_pred HHHHHHHHhC
Confidence 9999887764
No 120
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=54.12 E-value=37 Score=27.92 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=47.8
Q ss_pred eeEeccCCCCCHHHHHHHHhhcCceecc---CCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 15 VLVNLKNKGIDGSRVEKVLEAVHIAANK---NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 15 vlvdl~~~gi~g~~a~~~Le~~gI~vnk---n~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-++.+.-.|+...++.++|.+.||.+.. +..|....-...+.+|++..-.++. +|+..+.+.|.+++.
T Consensus 334 ~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~----edid~l~~aL~~~~~ 404 (405)
T COG0520 334 GIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTE----EDVDRLLEALKKALA 404 (405)
T ss_pred eEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCH----HHHHHHHHHHHHHhh
Confidence 3444444578999999999999988775 3345432222345599998777654 899988888877653
No 121
>PRK10637 cysG siroheme synthase; Provisional
Probab=54.07 E-value=19 Score=29.83 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=49.2
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEc--chhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlG--T~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
+-|+|++-+.... --.++.+.+++.||.||...-|...+-..|+-+|-| +.+++|-|.++.=-+.|-+.|.+.+
T Consensus 72 ~~~lv~~at~d~~-~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~~ie~~~ 147 (457)
T PRK10637 72 TCWLAIAATDDDA-VNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLL 147 (457)
T ss_pred CCEEEEECCCCHH-HhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 4566666554444 334566778888999998887766544445555555 3457788888877777766666555
No 122
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=53.46 E-value=51 Score=25.84 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=40.0
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
.-++++++. .+..+..+.|.+.||.+. |.. .+.|||..+.. ++++|+++..+.|.++
T Consensus 318 g~~~~~~~~---~~~~~~~~~l~~~Gi~v~----~~~-----~~~lR~~~~~~----~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 318 GYMIGIETT---ADLSQLVEAARDKGLIVL----TAG-----TNVIRLLPPLT----LTKEEIEQGIAILSEV 374 (375)
T ss_pred ceEEEEEec---CcHHHHHHHHHhCCCEEe----cCC-----CCEEEEcCCCc----cCHHHHHHHHHHHHHh
Confidence 335666652 256788899999999984 221 36799997544 5579999888887664
No 123
>PRK07550 hypothetical protein; Provisional
Probab=53.44 E-value=73 Score=24.94 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=41.7
Q ss_pred CCceeeEeccCCCCCHHHHHHH-HhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~-Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
..-.+|+++...+++..+..+. +++.||.+..-...+.. ..+.+||+... ..++++++..+.|.+
T Consensus 318 g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~---~~~~iRis~~~-----~~~~~~~~~~~~l~~ 383 (386)
T PRK07550 318 GAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPG---QEGYLRLAFAN-----ADVAGIGELVERLRA 383 (386)
T ss_pred ceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCC---CCCEEEEEeec-----CCHHHHHHHHHHHHh
Confidence 3456788765446777777665 57899998753322211 13579999742 457888887777754
No 124
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=53.31 E-value=48 Score=25.59 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=38.6
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
.++++++.+ +..++.+.|.+.||.+.. .. ...|||..... .+++|+++.-+.|.++
T Consensus 323 ~~~~~~~~~---~~~~~~~~l~~~Gv~v~~----~~-----~~~lRi~~~~~----~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 323 LMLGIELEA---PCKDIVKKALEKGLLVNC----AG-----PKVLRFLPPLI----ITKEEIDEAVSALEEA 378 (379)
T ss_pred eEEEEEecC---cHHHHHHHHHHCCcEEee----CC-----CCEEEEECCCc----CCHHHHHHHHHHHHHh
Confidence 356666543 467888889999999974 21 25699985432 3478888888887664
No 125
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=52.80 E-value=78 Score=24.65 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCC-CCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTV-PGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~l-P~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
++...+|+++. +..+..+.|.+.||.+-...- |+. ...+||+.. +++||+.+.+.|
T Consensus 294 s~~nfi~~~~~----~~~~l~~~L~~~gi~vr~~~~~~~~-----~~~iRis~~-------~~~e~~~l~~al 350 (351)
T PRK01688 294 SETNYILARFT----ASSAVFKSLWDQGIILRDQNKQPGL-----SNCLRITIG-------TREECQRVIDAL 350 (351)
T ss_pred CCCcEEEEEcC----CHHHHHHHHHHCCeEEEECCCcCCC-----CCeEEEeCC-------CHHHHHHHHHhh
Confidence 45667888864 567888888899999864321 111 346999965 458887665543
No 126
>PRK08912 hypothetical protein; Provisional
Probab=52.62 E-value=75 Score=24.87 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=41.0
Q ss_pred CCceeeEeccCCC--CCHHHHHHH-HhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKG--IDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~g--i~g~~a~~~-Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-+..+|+++.+.+ .+..+..+. +++.||.+..-..-+...+ ....+||+... .++++++--+.|.++|.
T Consensus 314 g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-~~~~iRl~~~~------~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 314 GTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDP-VTSVVRFCFAK------RDATLDEAVERLAAARR 385 (387)
T ss_pred cceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCC-CCCEEEEEEeC------CHHHHHHHHHHHHHHHh
Confidence 3567788886533 456555555 5789998874321111111 23579999663 36777776666666554
No 127
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=52.50 E-value=91 Score=24.20 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=36.8
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 82 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~ 82 (104)
+...+|+.+. +.+..++.+.|.+.||.|.. + ..++||+.. .+++|+.+.+.+.
T Consensus 280 ~g~f~~~~l~--~~~~~~~~~~l~~~Gi~V~~----~------~~~~Risi~-------~~~~~~~~~~~l~ 332 (335)
T PRK14808 280 RGNFVFIFME--KEEKERLLEHLRAKNIAVRS----F------REGVRITIG-------KREENDMILKELE 332 (335)
T ss_pred CCeEEEEeCC--CccHHHHHHHHHHCCeEEEE----C------CCCeEEecC-------CHHHHHHHHHHHH
Confidence 4556788765 33567888899999999973 1 147999953 3477777766654
No 128
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=52.32 E-value=34 Score=23.84 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=35.9
Q ss_pred eeEecc-CCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 15 VLVNLK-NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 15 vlvdl~-~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
+.+-|+ =+||.-..|...|+++||..| .|+| -++++|+..|.++|.+
T Consensus 15 v~~aLt~i~GIG~~~A~~ic~~lgi~~~---------------~~~~-------~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 15 IEYALTYIYGIGLTSAKEILEKANIDPD---------------IRTK-------DLTDEQISALREIIEE 62 (122)
T ss_pred eeeeecccccccHHHHHHHHHHcCcCcC---------------cCcc-------cCCHHHHHHHHHHHHH
Confidence 334443 369999999999999998766 3344 2889999999999865
No 129
>COG1827 Predicted small molecule binding protein (contains 3H domain) [General function prediction only]
Probab=52.30 E-value=18 Score=26.89 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=25.5
Q ss_pred CCeeeeCCCC-CceeeEeccCCCCCHHHHHHHHhhcCcee
Q 034072 2 GYELVSGGTE-NHLVLVNLKNKGIDGSRVEKVLEAVHIAA 40 (104)
Q Consensus 2 G~~vv~ggTd-~Hlvlvdl~~~gi~g~~a~~~Le~~gI~v 40 (104)
|.+.+..+|| .|+-++. .+.+-...+++..|++.|+.+
T Consensus 130 ~~~~l~~ltdg~h~h~l~-~~~~~~~~~~~~~l~~~g~l~ 168 (168)
T COG1827 130 GAKPLSELTDGVHLHTLK-ADFEERMEEIEDALEEKGILL 168 (168)
T ss_pred CCceeeecCCceeeeeee-ccchhhHHHHHHHHHhcCccC
Confidence 4344444444 3555666 455668999999999999863
No 130
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=51.81 E-value=91 Score=24.77 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=40.2
Q ss_pred CCCCceeeEeccCCCCCHHHH-HHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 9 GTENHLVLVNLKNKGIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 9 gTd~Hlvlvdl~~~gi~g~~a-~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
+.-...+|+++.+ +++..+. ++.+++.||.+.....-+.. ....+||+.. ..+++|++-.+.|.++
T Consensus 342 ~~g~~f~wi~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~---~~~~iRi~~~------~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 342 GVNAPYIWVKTPD-GMSSWDFFDKLLQEANVVGTPGSGFGPS---GEGYFRLSAF------GSRENVLEAMERIKKA 408 (409)
T ss_pred CCcceEEEEECCC-CCCHHHHHHHHHHHCCEEEeChhHhCCC---CCCEEEEEcc------CCHHHHHHHHHHHHhh
Confidence 3345578999854 4565554 45567889988643211111 1347999831 2578888777777654
No 131
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=51.29 E-value=55 Score=25.26 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 24 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 24 i~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.+..+..+.|.+.||.+.....|... .....|||+.... .+++|+++..+.|.+++.
T Consensus 336 ~~~~~~~~~L~~~gI~v~~~~~~~~~--~~~~~iRi~~~~~----~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 336 KLAQEFADRLLEEGVYVIGFSFPVVP--KGQARIRTQMSAA----HTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred HHHHHHHHHHHHCCceEeeeCCCCCC--CCCceEEEEECCC----CCHHHHHHHHHHHHHHHH
Confidence 35566667777779998754333211 1124699875432 467899988888877664
No 132
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=51.05 E-value=29 Score=27.01 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=39.6
Q ss_pred CCCceeeEeccCC-CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 10 Td~Hlvlvdl~~~-gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
...|.+++++... +.+..++.+.|.+.||.+.... | ...+.|||.... -.+++|++++.+.
T Consensus 336 ~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~-~-----~~~~~lRis~~~----~~t~edid~~~~~ 397 (398)
T cd00613 336 PFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY-L-----PVDGTLMIEPTE----TETKEELDALLEA 397 (398)
T ss_pred CeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccc-c-----CCCCeEEEEcCC----CCCHHHHHHHHHh
Confidence 3446677776542 4567788888888999875432 1 123579998654 3456888877654
No 133
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=50.92 E-value=1.2e+02 Score=23.88 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=37.0
Q ss_pred eeeEeccC-CCCCHHHHH-HHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKN-KGIDGSRVE-KVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 14 lvlvdl~~-~gi~g~~a~-~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.+|+++.+ .+.+..+.. +.+++.||.+.. +.. .+.....+||+... .++++++..+.|.+++.
T Consensus 322 ~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~p----g~~f~~~~~~~iRi~~~~------~~~~l~~~i~~l~~~~~ 387 (391)
T PRK07309 322 YIFAKIPAGYNQDSFKFLQDFARKKAVAFIP----GAAFGPYGEGYVRLSYAA------SMETIKEAMKRLKEYME 387 (391)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHhCCEEEeC----chhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHHH
Confidence 34667643 223455555 557889998863 331 11124679998552 45677777777766553
No 134
>PRK09265 aminotransferase AlaT; Validated
Probab=50.70 E-value=98 Score=24.50 Aligned_cols=66 Identities=15% Similarity=-0.013 Sum_probs=42.0
Q ss_pred CceeeEeccCC--C--CCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNK--G--IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~--g--i~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+-.+|+++... + -+...+.+.|++.||.|..-..-+. ..+.-+||+.. .+++++++-.+.|.+++.
T Consensus 331 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~---~~~~~~Ri~~~------~~~e~l~~~l~rl~~~l~ 400 (404)
T PRK09265 331 ALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNW---PEPDHFRIVTL------PRVDDLEEAIGRIGRFLS 400 (404)
T ss_pred ceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCC---CCCCeEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence 44667777532 1 1445678899999998864321111 11356999962 467888888888877665
No 135
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=50.64 E-value=1.2e+02 Score=23.97 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=37.2
Q ss_pred ceeeEeccCCCCCHHHH-HHHHhhcCceeccCCCCCC---CCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRV-EKVLEAVHIAANKNTVPGD---VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a-~~~Le~~gI~vnkn~lP~d---~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
=.+|+++. .+..+. .+.|++.||.+..-...+. ......+.+||+... .++++++..+.|.+++
T Consensus 327 ~f~~~~~~---~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~------~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 327 FYLWAKVP---GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA------PLAECVEAAERIVDFC 394 (396)
T ss_pred EEEEEECC---CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC------CHHHHHHHHHHHHHHh
Confidence 46788875 345555 4555789998864332111 111124579998542 3567777666666554
No 136
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=50.35 E-value=94 Score=24.64 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCCCCceeeEeccCCCCCHHH-HHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 8 GGTENHLVLVNLKNKGIDGSR-VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 8 ggTd~Hlvlvdl~~~gi~g~~-a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
.+...-.+|+++.+ +++..+ ++..+++.||.+.....-+ ......+||+.. ..+++|++-.+.|+++
T Consensus 334 ~~~~~~f~~v~l~~-~~~~~~l~~~l~~~~gv~v~pg~~f~---~~~~~~iRis~~------~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 334 GGEHAPYLWVKTPE-GISSWDFFDFLLYQYHVVGTPGSGFG---PSGEGFVRFSAF------GKRENIVEACERIKEA 401 (402)
T ss_pred CCCceeEEEEECCC-CCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEEec------CCHHHHHHHHHHHHhh
Confidence 34455577888754 556655 4555678899987432211 111357999932 2578887777776654
No 137
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=50.22 E-value=81 Score=24.98 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=39.8
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
.++.+++.. +..+..+.|.+.||.+... . ..-|||..+.. .+++|++++.+.|.+++
T Consensus 339 ~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~----~-----~~~iRi~p~l~----~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 339 LFIGVELNE---PARPYCEALKEEGLLCKET----H-----ETVIRFAPPLV----ITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEEEEecc---hHHHHHHHHHHCCeEEecC----C-----CCEEEEECCcc----cCHHHHHHHHHHHHHHh
Confidence 456676542 4567778888899998632 1 24699995443 57799999988887765
No 138
>PRK05957 aspartate aminotransferase; Provisional
Probab=50.18 E-value=92 Score=24.56 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=39.4
Q ss_pred ceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-.+|+++. .+++..+..+.| ++.||.+-.-..- .......+||+...+ .+++|++-.+.|.+.++
T Consensus 319 ~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f---~~~~~~~iRis~~~~-----~~~~l~~~~~~l~~~~~ 384 (389)
T PRK05957 319 FYCFLKVN-TDLNDFELVKQLIREYRVAVIPGTTF---GMKNGCYLRIAYGAL-----QKATAKEGIERLVQGLK 384 (389)
T ss_pred EEEEEeCC-CCCChHHHHHHHHHHCCEEEccchhh---CCCCCCEEEEEEecC-----CHHHHHHHHHHHHHHHH
Confidence 35678774 467777777776 5789987643211 111134699996432 46677766666666554
No 139
>PLN02397 aspartate transaminase
Probab=49.67 E-value=44 Score=27.03 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=39.2
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
.+|+++ +...+++.|+++||.+.+ +| ||... |..+++++++++.|.+++.++
T Consensus 371 fl~~~l-----~~~~~~~Ll~~~~V~v~~------------~~-Ri~~~-----~~~~~~i~~~~~~i~~~~~~~ 422 (423)
T PLN02397 371 FSFTGL-----NKEQVDRMTKEYHIYMTR------------DG-RISMA-----GLSSKNVPYLADAIHAVVTNA 422 (423)
T ss_pred EEecCC-----CHHHHHHHHHhCCEEECC------------CC-eEEEe-----eCCHHHHHHHHHHHHHHHhcc
Confidence 456654 466888888999999952 23 88743 467789999999999998653
No 140
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=49.30 E-value=97 Score=25.44 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=45.3
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
..+++-|.+... .....+.+.|.+.||.+... .+-|||- |++| ++++|++++.+.+.++|..
T Consensus 364 ~Gl~~~iel~~~-~~~~~i~~~l~e~Gi~v~~~----------g~~l~~~-Ppl~---it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 364 LGAIGVVEMKEP-VNMATLQPRFVEHGIWVRPF----------GKLVYIM-PPFI---ISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred cceEEEEEeCCc-ccHHHHHHHHHHCCeEEEec----------CCEEEEe-CCcc---CCHHHHHHHHHHHHHHHHH
Confidence 456666776533 24567888888899998542 1359996 6666 5789999999999999863
No 141
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=49.29 E-value=1.3e+02 Score=24.18 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=43.7
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
++...+++++.. +- ...+.+.|.+.||.+-...-++- ....+||.+- +++|++.+-+.+.+++.
T Consensus 290 S~aNFvlv~~~~-~~-~~~l~~~L~~~giivR~~~~~~~----~~~~lRitvg-------t~een~~ll~AL~~~~~ 353 (356)
T COG0079 290 SQANFVLVRVPD-AE-AAALAEALLKKGILVRDCSSVGL----LPGYLRITVG-------TPEENDRLLAALREVLK 353 (356)
T ss_pred CCCcEEEEECCC-cc-HHHHHHHHHHCCEEEEeCCCCCC----CCCeEEEEeC-------CHHHHHHHHHHHHHHHh
Confidence 457899999764 32 44788888888999987632221 1346999852 46777777777766654
No 142
>PLN02483 serine palmitoyltransferase
Probab=48.75 E-value=80 Score=26.34 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=45.9
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|+.++ +..++..+++-+-.. ....+..+.|.+.||.+.....|..+ ...+.+||...+. .+++|+++..+.|
T Consensus 389 G~~v~-~~~~sp~~~l~l~~~-~~~~~~~~~Ll~~GI~v~~~~fp~~p--~~~~~vRi~isa~----~t~edId~~l~~L 460 (489)
T PLN02483 389 GFEVL-GDNDSPVMPIMLYNP-AKIPAFSRECLKQNVAVVVVGFPATP--LLLARARICISAS----HSREDLIKALEVI 460 (489)
T ss_pred CCccc-CCCCCCEEEEEECCH-HHHHHHHHHHHHCCcEEeeeCCCCCC--CCCceEEEEeCCC----CCHHHHHHHHHHH
Confidence 44443 334555554433211 13445666677789999864444332 2235799976554 3579999999888
Q ss_pred HHHHH
Q 034072 82 DAAVK 86 (104)
Q Consensus 82 ~~~l~ 86 (104)
.+++.
T Consensus 461 ~~~~~ 465 (489)
T PLN02483 461 SEVGD 465 (489)
T ss_pred HHHHH
Confidence 88764
No 143
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=48.17 E-value=34 Score=27.96 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCeeeEcc-hhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 44 TVPGDVSAMVPGGIRMGT-PALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 44 ~lP~d~~~~~~sglRlGT-~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
..|++.++..||.++.-. ...+-|-|+++|+++|-+...++-..|+++
T Consensus 113 ~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~A 161 (363)
T COG1902 113 SHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEA 161 (363)
T ss_pred cccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 345444566678877776 478899999999999999999998888775
No 144
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=47.50 E-value=93 Score=24.14 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=36.9
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
-.+|+++ ..+..+..+.|++.||.+..... +.. ..+..+||+... .+++|++..+.|
T Consensus 306 ~~~~~~~---~~~~~~~~~~l~~~gv~v~pg~~-f~~--~~~~~iRi~~~~------~~~~~~~~~~~l 362 (364)
T PRK07865 306 LYLWATR---GEDCWDTVAWLAERGILVAPGDF-YGP--AGAQHVRVALTA------TDERIAAAVERL 362 (364)
T ss_pred EEEEEeC---CCCHHHHHHHHHHCCEEEeCccc-cCc--CCCCEEEEEecC------CHHHHHHHHHHh
Confidence 3466665 23556777889999999875332 221 124679999642 478888877665
No 145
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=47.09 E-value=63 Score=25.22 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=41.3
Q ss_pred CceeeEeccCCC-------CCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKG-------IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 12 ~Hlvlvdl~~~g-------i~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
.+++++.+.+.. .......+.|.+.||.+.... ...+|+..+.. .+++|+++..+.+.++
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~---------~~~lR~~~~~~----~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 346 GLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG---------GNVIRLLPPLI----ITEEEIDEGLDALDEA 412 (413)
T ss_pred ceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC---------CCEEEEECCCc----CCHHHHHHHHHHHHHh
Confidence 466666664321 356677788888999987542 24689985432 5789998888887665
Q ss_pred H
Q 034072 85 V 85 (104)
Q Consensus 85 l 85 (104)
|
T Consensus 413 l 413 (413)
T cd00610 413 L 413 (413)
T ss_pred C
Confidence 3
No 146
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=47.07 E-value=34 Score=27.22 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=43.8
Q ss_pred ceeeEecc--CCCCCHHHHHHHHhhcCceeccCCCCCCCCCC---------CCCeeeEcchhHh---hcCCCHHHHHHHH
Q 034072 13 HLVLVNLK--NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAM---------VPGGIRMGTPALT---SRGFVEEDFAKVA 78 (104)
Q Consensus 13 Hlvlvdl~--~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~---------~~sglRlGT~a~T---~RG~~e~dm~~Ia 78 (104)
|++.+-+. ..+++..++.+.|++.||-+.....|-...+. -|..-++.--.++ -.+++++|++.|+
T Consensus 291 ~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~ 370 (379)
T PRK11658 291 HLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVI 370 (379)
T ss_pred EEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence 55544432 24678999999999999987643333221110 0112222222222 4678899999999
Q ss_pred HHHHHHH
Q 034072 79 YFFDAAV 85 (104)
Q Consensus 79 ~~i~~~l 85 (104)
+.|.+++
T Consensus 371 ~~i~~~~ 377 (379)
T PRK11658 371 TALQQIA 377 (379)
T ss_pred HHHHHHH
Confidence 9988765
No 147
>PRK15029 arginine decarboxylase; Provisional
Probab=46.79 E-value=29 Score=31.22 Aligned_cols=56 Identities=20% Similarity=0.123 Sum_probs=39.6
Q ss_pred eeEeccCCCCCHH---------HHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 15 VLVNLKNKGIDGS---------RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 15 vlvdl~~~gi~g~---------~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
+.|+++..|++|. ++++.|++.||.+-+...- .+..|++-|-+++++..+-+-+.+
T Consensus 536 lti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~-------------~vL~l~s~g~t~~~~~~L~~aL~~ 600 (755)
T PRK15029 536 VSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDF-------------QIMFLFSMGVTRGKWGTLVNTLCS 600 (755)
T ss_pred EEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecCCC-------------eEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566667777887 9999999999999876221 124566667777888766655544
No 148
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=46.18 E-value=41 Score=30.11 Aligned_cols=49 Identities=22% Similarity=0.122 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 22 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 22 ~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.|++|..+++.|++.||.+-++.. . ....|.+-|-+++++..+-+-+.+
T Consensus 507 ~Gipg~~v~~~L~e~gI~~E~~d~---~----------~iLfl~s~g~t~~~~~~L~~aL~~ 555 (714)
T PRK15400 507 FGIPASIVAKYLDEHGIVVEKTGP---Y----------NLLFLFSIGIDKTKALSLLRALTD 555 (714)
T ss_pred cCCCHHHHHHHHHHcCCEEEecCC---C----------eEEEEeCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998722 1 123455667777887766555443
No 149
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=46.04 E-value=38 Score=27.80 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=44.5
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|+++..- +++.+|.+++.... ...|...++......+-+..+ --+|+ +|.+-.+++|..++.+.|
T Consensus 273 G~~~~~~-~~tN~vf~~l~~~~------i~~l~~~~~~~~~~~~~~~~~----~~vRf----vts~a~~~edv~~~~~~~ 337 (342)
T COG2008 273 GVKLAFP-VETNMVFVRLPESA------IEALRLAGALFYRGVLIGAHG----EIVRF----VTSWATSEEDVDELVAAI 337 (342)
T ss_pred CceeccC-CcccEEEEECChHH------HHHHHhhchhheeeeeccCCC----ceEEE----EeeccCCHHHHHHHHHHH
Confidence 6777766 89999999975433 366777777766543211100 12777 455566689998888887
Q ss_pred HHH
Q 034072 82 DAA 84 (104)
Q Consensus 82 ~~~ 84 (104)
..+
T Consensus 338 ~~~ 340 (342)
T COG2008 338 KAL 340 (342)
T ss_pred HHh
Confidence 654
No 150
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=45.64 E-value=1.2e+02 Score=23.66 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=39.5
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-++++++ ..+..+..+.|.+.||.+... . ...|||..+.. .+++|+++..+.|.+++.
T Consensus 336 ~~~~i~~---~~~~~~~~~~l~~~Gv~v~~~----~-----~~~lRi~~~~~----~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 336 LMIGIEL---DRPAAEIVKKALEKGLLINVT----G-----DNVLRLLPPLI----ISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred EEEEEEe---cCcHHHHHHHHHHCCeEEeec----C-----CCEEEEECCcc----cCHHHHHHHHHHHHHHHH
Confidence 3566665 235667777777779998642 1 24599974322 478999999998888775
No 151
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=45.42 E-value=1.3e+02 Score=24.81 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=37.5
Q ss_pred eeeEeccCCCCC-------HHHHHHHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGID-------GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 14 lvlvdl~~~gi~-------g~~a~~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
.+|+++... ++ -..+++.|+++||.+. |+.. ....+..+||+... ..++++++..+.|.+++
T Consensus 359 flwi~l~~~-~~~~~~~~~~~l~~~ll~~~gV~v~----PG~~f~~~~~g~~Rl~f~~-----~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 359 FCWVDMRHL-LKSNTFEAEMELWKKIVYEVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEETLDLAMKRLKSFV 428 (468)
T ss_pred EEEEEchHh-cCcCCchHHHHHHHHHHHhCCEEEe----CccccCCCCCCEEEEEecC-----CCHHHHHHHHHHHHHHH
Confidence 568887532 12 1234556788999987 4432 11224679999654 34567776666666665
Q ss_pred H
Q 034072 86 K 86 (104)
Q Consensus 86 ~ 86 (104)
.
T Consensus 429 ~ 429 (468)
T PLN02450 429 E 429 (468)
T ss_pred H
Confidence 4
No 152
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=44.56 E-value=45 Score=29.87 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 21 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 21 ~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
..|++|..+.+.|++.||.+-++..- ....|.+-|-+++++..+-+-+.+
T Consensus 506 ~~Gi~g~~l~~~L~e~gI~~E~~d~~-------------~vL~l~s~g~t~~~~~~L~~aL~~ 555 (713)
T PRK15399 506 EEGIPAALVAKFLDERGIVVEKTGPY-------------NLLFLFSIGIDKTKAMGLLRGLTE 555 (713)
T ss_pred cCCCCHHHHHHHHHHcCCEEEecCCC-------------eEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999987321 124456667777888766555543
No 153
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=44.31 E-value=86 Score=25.23 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=35.6
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcC----ceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVH----IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~g----I~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
||||+=+=+. .| .+.+|.+.+.++| |.+|+- |-....++.+.+|++.+=++-.+..
T Consensus 8 ~DnH~H~np~--~g-g~~ea~~~F~rAGGt~~il~nlp-----------------s~~~g~~~~~~edy~r~yd~~lr~v 67 (285)
T COG1831 8 TDNHFHLNPK--NG-GALEAARRFHRAGGTHLILVNLP-----------------SWSYGIAPTGGEDYRRLYDIHLRLV 67 (285)
T ss_pred ecceeeecCC--cC-cHHHHHHHHHHcCCcEEEEeecc-----------------cccccCCCCcHHHHHHHHHHHHHHH
Confidence 8999755332 24 6899999999998 334432 1223345666777777666654433
Q ss_pred H
Q 034072 86 K 86 (104)
Q Consensus 86 ~ 86 (104)
+
T Consensus 68 e 68 (285)
T COG1831 68 E 68 (285)
T ss_pred H
Confidence 3
No 154
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=43.96 E-value=59 Score=26.77 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
..++.+.|.+.||.+... ...|||- |.++ ++++|++++.+.+.++|.
T Consensus 396 ~~~~~~~~~~~Gv~~~~~----------~~~lr~~-Ppl~---~t~~eid~~~~~l~~~l~ 442 (445)
T PRK09221 396 GYEAFMKCFEKGLLVRYT----------GDTIALS-PPLI---IEKAQIDELVDALGDALR 442 (445)
T ss_pred HHHHHHHHHHCCeEEeec----------CCEEEEE-CCcc---CCHHHHHHHHHHHHHHHH
Confidence 346677788889998632 1359995 5555 488999999999999885
No 155
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=43.57 E-value=1.5e+02 Score=23.74 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=39.7
Q ss_pred CceeeEeccCC---CC-CH-HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNK---GI-DG-SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~---gi-~g-~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.=.+|+++... ++ +. ..+.+.|++.||.+..-..-+ ....+||+.. ..++++++-.+.|.++++
T Consensus 335 g~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----~~~~iRi~~~------~~~~~l~~al~rl~~~l~ 403 (409)
T PLN00143 335 AFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG-----LKNWLRITFA------VEQSSLEDGLGRLKSFCG 403 (409)
T ss_pred eEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC-----CCCeEEEEEc------CCHHHHHHHHHHHHHHHH
Confidence 34678888542 22 33 445677799999987432211 1357999954 236777777777766654
No 156
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=43.46 E-value=79 Score=25.03 Aligned_cols=60 Identities=7% Similarity=-0.083 Sum_probs=35.9
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEc--chhHhhcCCCHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlG--T~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.+++++.+.. +...+.+.|++.||.+....- ... ...-+||. +++-++ .||+.+.+.|.+
T Consensus 282 f~~~~~~~~~-~~~~~~~ll~~~gV~v~~~~~--f~~--~~~~vRis~~~~~~~~-----~~~~~~~~al~~ 343 (346)
T TIGR03576 282 FVIKGVEEEK-LIEIGLDLLRNYGIITITAVG--MPG--ASKTLRFDLAAKDAER-----IGDDYLVEAVKD 343 (346)
T ss_pred EEEEeCCCCC-HHHHHHHHHHhCCEEEeCCcc--cCC--CCCeEEEEEecChHHh-----cCHHHHHHHHHh
Confidence 7888875421 347889999999999884221 111 12458884 333222 257766666544
No 157
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=43.07 E-value=1.1e+02 Score=24.23 Aligned_cols=74 Identities=15% Similarity=0.059 Sum_probs=43.8
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCC-CCCC---------CCeeeEcchhH---hhcCCCHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMV---------PGGIRMGTPAL---TSRGFVEEDFAKV 77 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~-~~~~---------~sglRlGT~a~---T~RG~~e~dm~~I 77 (104)
..|++++-+.+ +.+..+..+.|.+.||.+.....|--. +.+. |..-++....+ .--.++++||+.|
T Consensus 288 ~~~~~~~~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i 366 (375)
T PRK11706 288 NAHMFYIKLRD-LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTV 366 (375)
T ss_pred eeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHH
Confidence 35677776643 458899999999999997654333221 1100 01111111111 2336889999999
Q ss_pred HHHHHHHH
Q 034072 78 AYFFDAAV 85 (104)
Q Consensus 78 a~~i~~~l 85 (104)
.+.|.+++
T Consensus 367 ~~~i~~~~ 374 (375)
T PRK11706 367 IDTILEFF 374 (375)
T ss_pred HHHHHHHh
Confidence 99887654
No 158
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=42.83 E-value=1.2e+02 Score=23.35 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=37.8
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
+-.+|+++.. +++..+..+.|.+.||.+......+.. ....+||+.. ..+++|++.-+.+
T Consensus 288 ~~~~~~~~~~-~~~~~~l~~~L~~~gv~v~~g~~f~~~---~~~~~Ri~~~------~~~~~~~~~l~~~ 347 (350)
T TIGR03537 288 TFYLWVKVPS-GIDAKDYALRLLENGIVVAPGENFGSG---EEGYVRVALV------PTLEECEEALRLW 347 (350)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHCCEEEcCchhhCCC---CCCEEEEEec------CCHHHHHHHHHHH
Confidence 4467888753 567888888888899998743221111 1356999852 2467776654443
No 159
>PRK07568 aspartate aminotransferase; Provisional
Probab=42.29 E-value=1.6e+02 Score=22.89 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=39.1
Q ss_pred CceeeEeccCCCCCHHHHHHHH-hh-----cCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVL-EA-----VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~L-e~-----~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
+..+|+++.. . +..+..+.| ++ .||.+..-..-+..+......+||+.. ..+++|++.-+.|.+++
T Consensus 319 ~~~~~~~l~~-~-~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~------~~~~~~~~~~~~l~~~l 390 (397)
T PRK07568 319 AFYIIAKLPV-D-DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV------LNEEDLKRAMEILKEAL 390 (397)
T ss_pred ceEEEEecCC-C-CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe------CCHHHHHHHHHHHHHHH
Confidence 3456788743 2 555555555 43 577776322111111112357999942 45788888888888777
Q ss_pred HH
Q 034072 86 KL 87 (104)
Q Consensus 86 ~~ 87 (104)
+.
T Consensus 391 ~~ 392 (397)
T PRK07568 391 EK 392 (397)
T ss_pred HH
Confidence 53
No 160
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=41.63 E-value=48 Score=23.73 Aligned_cols=45 Identities=33% Similarity=0.522 Sum_probs=24.8
Q ss_pred CCeeeeCCCCC----------ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCC
Q 034072 2 GYELVSGGTEN----------HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF 69 (104)
Q Consensus 2 G~~vv~ggTd~----------Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~ 69 (104)
+.++++||||- .-.+||++... |-.+|..+ ..+|+|| +.+|..-+
T Consensus 23 ~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~----------eL~~I~~~------------~~~l~IG-A~vtl~~l 77 (171)
T PF00941_consen 23 DARIVAGGTDLGVQMREGILSPDVLIDLSRIP----------ELNGISED------------DGGLRIG-AAVTLSEL 77 (171)
T ss_dssp TEEEESS-TTHHHHHHTTS---SEEEEGTTSG----------GGG-EEEE------------TSEEEEE-TTSBHHHH
T ss_pred CCEEEeCCCccchhcccCccccceEEEeEEec----------ccccEEEe------------ccEEEEC-CCccHHHH
Confidence 45788899973 33677765321 44455554 2589999 44444433
No 161
>PRK08637 hypothetical protein; Provisional
Probab=41.22 E-value=56 Score=25.79 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=37.6
Q ss_pred eeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.+|+++. +++..+..+.| ++.||.+.. +. .+.+||+... ..+++|++-.+.|.+++.
T Consensus 328 ~~~~~l~--~~~~~~l~~~l~~~~gv~~~~----~~-----~~~iRi~~~~-----~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 328 FMCLKLK--GVDAEELRVHLLEKYGIGTIA----LN-----ETDLRIAFSC-----VEEEDIPELFDSIYKAIK 385 (388)
T ss_pred EEEecCC--hHHHHHHHHHHhhhcceEEEe----cc-----CCceEEEeec-----CCHHHHHHHHHHHHHHHH
Confidence 5666774 34556665555 678997752 21 3469998643 457888888888877765
No 162
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=41.02 E-value=51 Score=26.02 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 24 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 24 i~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
++...+++.+++.||.+.. +| ||+... ..++++++.++.|+++|
T Consensus 353 l~~~~~~~l~~~~~V~~~p------------~~-ri~~~~-----~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 353 LTPEQVDRLREEFGVYAVG------------SG-RINVAG-----LNESNIDYVAEAIAAVL 396 (396)
T ss_pred CCHHHHHHHHHcCCEEEcC------------CC-eEEEee-----CCHHHHHHHHHHHHhhC
Confidence 3567888999999998753 23 888533 67789999999988754
No 163
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=40.96 E-value=47 Score=26.83 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 65 TSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 65 T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
+-|.|+++|+++|-+-..++-..++++
T Consensus 145 ~p~~mt~~eI~~ii~~f~~AA~rA~~A 171 (362)
T PRK10605 145 TPRALELEEIPGIVNDFRQAIANAREA 171 (362)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 458899999999999888888877765
No 164
>PRK09082 methionine aminotransferase; Validated
Probab=40.40 E-value=1.5e+02 Score=23.20 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=37.3
Q ss_pred CceeeEeccC-CCCCHHHHHHH-HhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 12 NHLVLVNLKN-KGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 12 ~Hlvlvdl~~-~gi~g~~a~~~-Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
+..+|+++.. .+++..+..+. +++.||.+..-..-+. .+.....+||+.. ..+++|++--+.|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~-~~~~~~~~Ri~~~------~~~~~l~~~~~rl 383 (386)
T PRK09082 319 TYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYA-DPFPHRLVRLCFA------KQEETLDAAAERL 383 (386)
T ss_pred eEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCC-CCCCCCEEEEEec------CCHHHHHHHHHHH
Confidence 4567888864 35677777775 5899999874321111 1122346999963 2456665544443
No 165
>PRK07681 aspartate aminotransferase; Provisional
Probab=39.51 E-value=1.6e+02 Score=23.30 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=38.0
Q ss_pred CCceeeEeccCCCCCHHHHHHHH-hhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
..-.+|+++.+ +++..+..+.| ++.||.+..-.. +. ...++.+||+.. ..++++++..+.|.+
T Consensus 321 ~g~f~~~~l~~-~~~~~~~~~~l~~~~gv~v~pg~~-f~--~~~~~~iRis~~------~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 321 GSMFVWAEIPK-GWTSLSFAYALMDRANVVVTPGHA-FG--PHGEGFVRIALV------QDEEVLQQAVENIRN 384 (399)
T ss_pred eeeEEEEECCC-CCCHHHHHHHHHHhCCEEEeCChh-hC--cCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence 35578888753 55666555554 559999864321 11 111357999864 246777776666655
No 166
>TIGR03020 EpsA transcriptional regulator EpsA. Proteins in this family include a C-terminal LuxR transcriptional regulator domain (pfam00196). These proteins are positioned proximal to either EpsH-containing exopolysaccharide biosynthesis operons of the Methylobacillus type, or the associated PEP-CTERM-containing genes.
Probab=38.99 E-value=41 Score=25.94 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHHHH--HHhhhccCcccccCC
Q 034072 70 VEEDFAKVAYFFDAAVKLTV--KIKSETQGSYQCFLP 104 (104)
Q Consensus 70 ~e~dm~~Ia~~i~~~l~~~~--~~~~~~~~~~~~~~~ 104 (104)
+++|...+.++|.+.+.+-. +.+.=+||..|||||
T Consensus 2 ~~~~~~~~~~~~~~s~~~~~~~~~~~W~qg~~q~~lp 38 (247)
T TIGR03020 2 TDDEAGHLFRILDASLRIRRRHQFFSWLQGEVQSLLP 38 (247)
T ss_pred CHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhccC
Confidence 56777777777777665533 335567899999998
No 167
>PRK08363 alanine aminotransferase; Validated
Probab=38.68 E-value=1.9e+02 Score=22.75 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=38.7
Q ss_pred CCceeeEeccCCC-C-CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKG-I-DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 11 d~Hlvlvdl~~~g-i-~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.+..+|+.+.+.. . +...+.+.|.+.||.|..-.. + +......+||... ..++++++-.+.|.+++.
T Consensus 325 g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~-f--~~~~~~~iRis~~------~~~~~l~~~l~~l~~~~~ 393 (398)
T PRK08363 325 GAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSG-F--GEYGAGHFRLVFL------PPVEILEEAMDRFEEFMR 393 (398)
T ss_pred eEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchh-h--CCCCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 3445555665421 2 344557788999999863221 1 1111356999963 247777777777766554
No 168
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=38.36 E-value=90 Score=25.69 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
..++.+.|.+.||.+... .+-|||- |.++ ++++|++++.+.+.++|.
T Consensus 393 ~~~~~~~l~~~Gvl~~~~----------~~~lr~~-Ppl~---~t~~eid~~~~~l~~~l~ 439 (442)
T PRK13360 393 AYEVFLKCFEKGLMIRYT----------GDILALS-PPLI---IEEAQIDELFDILAQALK 439 (442)
T ss_pred HHHHHHHHHHCCcEEEec----------CCEEEEe-CCCc---cCHHHHHHHHHHHHHHHH
Confidence 345666778889998642 1359995 5555 378999999999988885
No 169
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=38.19 E-value=93 Score=26.00 Aligned_cols=50 Identities=16% Similarity=0.045 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVK 90 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~ 90 (104)
..+.+.|.+.||.+... + +-|||- |++| ++++|++++.+.+.++|...+.
T Consensus 421 ~~~~~~~~~~Gll~~~~---g-------~vi~~~-PpL~---it~~ei~~~~~~l~~~l~~~~~ 470 (472)
T PRK08742 421 LHAYRAALARGVVLRPL---G-------DVLYWM-PPYC---VDEAQLALLADTTRHAIDEAVA 470 (472)
T ss_pred HHHHHHHHHCCeEEEec---C-------CEEEEE-CCCC---CCHHHHHHHHHHHHHHHHHHhc
Confidence 34556667789998642 1 349995 6666 5689999999999999986543
No 170
>PTZ00376 aspartate aminotransferase; Provisional
Probab=37.86 E-value=95 Score=24.67 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=33.0
Q ss_pred CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 25 ~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+-..+++.+++.||.+- |+ | ||.... +++++|+++++.|.+++.
T Consensus 359 ~~~~~~~L~~~~~v~v~----p~--------~-Ris~~~-----~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 359 TKEQVERLIEKYHIYLL----DN--------G-RISVAG-----LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred CHHHHHHHHHhCCEeec----CC--------C-eEEEec-----cCHHhHHHHHHHHHHHHh
Confidence 45677888888899883 33 3 887532 677899999999988765
No 171
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=36.24 E-value=2e+02 Score=22.26 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=36.3
Q ss_pred CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 25 ~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+..+..+.|.+.||.+.....|..+ .....|||.... ..+++|+++..+.|.++++
T Consensus 333 ~~~~l~~~L~~~gI~v~~~~~~~~~--~~~~~iRis~~~----~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 333 LAQRFARRLLEEGIYVTGFFYPVVP--KGQARIRVQISA----AHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred HHHHHHHHHHHCCeeEeeeCCCCCC--CCCceEEEEECC----CCCHHHHHHHHHHHHHHHH
Confidence 4667777777789998743333211 112358887543 3577999999988877654
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=36.18 E-value=59 Score=27.05 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=31.4
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhc-CceeccCCCCCC
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNTVPGD 48 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~-gI~vnkn~lP~d 48 (104)
|-.+++.|+|.-++++++ +-++....||.. ...-|++..|+-
T Consensus 193 gd~i~ScGmDhslk~W~l-----~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRL-----NVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred CCeeeccCCcceEEEEec-----ChhHHhhhhhhhcccCCCCccCcCC
Confidence 567889999999999986 556677788876 444566666654
No 173
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=36.09 E-value=93 Score=20.99 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=35.1
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
++.|| |-+-.=+.+.|+++|+.++...+=.|- |++=+-. .-+.++|.+++.+.+.+
T Consensus 54 iIaID----GC~~~Ca~k~le~~g~~~~~~i~~tdl------gi~k~~~----~~~~~~~i~~~~~~v~~ 109 (110)
T PF08859_consen 54 IIAID----GCPLCCAKKILEEAGVKPDEHIVLTDL------GIKKRKG----DDVSEEEIEEVVEAVKE 109 (110)
T ss_pred eEEEC----CCHHHHHHHHHHHcCCCCceEEEEeec------ccccCCC----CCCCHHHHHHHHHHHHh
Confidence 45666 777888999999999998876432231 2221111 33666777777766543
No 174
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=35.98 E-value=1.8e+02 Score=22.83 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=35.4
Q ss_pred CceeeEeccCCCCCHHHHHHH-HhhcCceeccCCCCCCC----CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDV----SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~-Le~~gI~vnkn~lP~d~----~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.=.+|+++. .+..+..+. +++.||.+..-.. +.. .......+||+... .++++++.-+.|.+
T Consensus 325 g~f~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~-f~~~~~~~~~~~~~~Ris~~~------~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 325 GFYLWPKVP---GDDEAFARALYEEENVTVLPGRF-LAREAEGVNPGEGRVRIALVA------PLEECVEAAERIRS 391 (393)
T ss_pred eEEEEEECC---CCHHHHHHHHHHHCCEEEeCCcc-ccccccCCCCCCCEEEEEecC------CHHHHHHHHHHHHH
Confidence 336788875 345555544 5789999874431 111 11123579999542 35666666555544
No 175
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=35.25 E-value=97 Score=21.52 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=35.4
Q ss_pred eeeEeccC-CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 14 LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 14 lvlvdl~~-~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.+.+-|+. +||.-..|...|+++||.-|+ |+| -++++|...|.++|.+
T Consensus 14 ~v~~aL~~I~GIG~~~a~~i~~~lgi~~~~---------------~~~-------~L~~~qi~~l~~~i~~ 62 (122)
T PRK05179 14 RVVIALTYIYGIGRTRAKEILAAAGIDPDT---------------RVK-------DLTDEELDKIREEIDK 62 (122)
T ss_pred EEEeeecccccccHHHHHHHHHHhCcCccc---------------ccc-------cCCHHHHHHHHHHHHh
Confidence 34444433 699999999999999986653 333 4788888888888875
No 176
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=35.19 E-value=1.9e+02 Score=23.78 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=39.8
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
++-|.+.... ....+.+.|.+.|+.+... .+-|||- |+++ .+++|+.++.+.+.++|.
T Consensus 365 ~~~ve~~~~~-~~~~~~~~l~~~Gl~~~~~----------g~~i~~~-Ppl~---it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 365 IGVVETTRPV-NMAALQRFFVEQGVWIRPF----------GKLIYLM-PPYI---ILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred EEEEEeCCcc-cHHHHHHHHHHCCcEEEec----------CCEEEEe-CCCC---CCHHHHHHHHHHHHHHHh
Confidence 4444443222 4567788888999998642 1358885 5555 577999999999988874
No 177
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=35.09 E-value=42 Score=27.95 Aligned_cols=85 Identities=19% Similarity=0.325 Sum_probs=52.6
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCC----CCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT----VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~----lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
-+|-+.-..+++.|+.| ++|||.+--.. +-....-.+.+--|+| +++..|=..-.|+.++++-+.+-.
T Consensus 238 ~~NiilC~SLSK~GLPG-------~R~GIiIane~viqaitnmn~iisLap~~~G-~Aia~~mie~gdl~rlseqVIrPF 309 (417)
T COG3977 238 NENIILCMSLSKLGLPG-------SRCGIIIANEKVIQAITNMNGIISLAPGRMG-PAIAAEMIESGDLLRLSEQVIRPF 309 (417)
T ss_pred CCCEEEEeehhhcCCCC-------cceeEEEccHHHHHHHHhccceeeecCCCcc-HHHHHHHhhcchHHHHHHHhhhHH
Confidence 34544446678888887 45676643211 1222221222345888 899999888899999998776554
Q ss_pred -----HHHHHH-hhhccCcccccC
Q 034072 86 -----KLTVKI-KSETQGSYQCFL 103 (104)
Q Consensus 86 -----~~~~~~-~~~~~~~~~~~~ 103 (104)
..+.++ ++.. +.++|++
T Consensus 310 Y~~~~q~~~~~l~~~l-p~~~~~i 332 (417)
T COG3977 310 YRNRVQTTIAILRRYL-PEYRCLI 332 (417)
T ss_pred HHHHHHHHHHHHHHhc-Cccceee
Confidence 334444 4455 7888875
No 178
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=34.80 E-value=2.1e+02 Score=22.04 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=38.8
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
..+.+.+.+ ..+..+..+.|.+.||.+.....|..+ .....||+-.+ ...+++|+++..+.|.++++
T Consensus 314 ~~~~~~~~~-~~~~~~~~~~L~~~gi~v~~~~~~~~~--~~~~~iRi~~~----~~~~~e~i~~~~~~l~~~~~ 380 (385)
T TIGR01825 314 PITPVVIGD-EKAAQEFSRRLFDEGIFAQSIVFPTVP--RGTARIRNIPT----AEHTKDDLDQALDAYEKVGK 380 (385)
T ss_pred CEEEEEECC-HHHHHHHHHHHHHCCcEEcccCCCCCC--CCCceEEEEEc----CCCCHHHHHHHHHHHHHHHH
Confidence 445444322 123455556665559988644333321 11235787532 23788999999999988774
No 179
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=34.77 E-value=1.5e+02 Score=23.43 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=38.6
Q ss_pred eeeEeccCC--CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNK--GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTV 89 (104)
Q Consensus 14 lvlvdl~~~--gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~ 89 (104)
++.+.+... +++.....+ |.+.||.+..-... . ....+|+|.... -+++|+..+.+.|.+++...+
T Consensus 308 i~~~~~~~~~~~~~~~~~~~-l~~~~i~v~~g~~~-~----~~~~vRis~~~~----~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 308 SVTLDFVDAQAAVDAAAVAK-LLRENGAVDIEPYR-D----APNGLRIWCGPT----VEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred EEEEEcCCchHHHHHHHHHH-HHHcCCeecccccc-C----CCCcEEEecCCC----CCHHHHHHHHHHHHHHHHHHh
Confidence 444544320 234444444 44558777532111 1 235799996644 347999999999988776544
No 180
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=34.47 E-value=2e+02 Score=23.46 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=40.6
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.++-+.+.... ....+.+.|.+.||.+... ...+|+-.+.. .+++|++++.+.+.++|.
T Consensus 367 ~~~~i~~~~~~-~~~~~~~~l~~~Gv~~~~~----------~~~l~~~ppl~----~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 367 AIGVVEMYKPV-NVEELQKKFVEQGVWIRPF----------GKLIYVMPPYI----ITTEQLQKLTAALIEALH 425 (427)
T ss_pred cEEEEEECCcc-CHHHHHHHHHHCCeEEEec----------CCEEEEECCCC----CCHHHHHHHHHHHHHHHh
Confidence 34445553322 4567888888999998632 12588874444 668999999999988874
No 181
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=34.13 E-value=1.5e+02 Score=24.53 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=41.8
Q ss_pred CCeeeeCCCCCceeeEeccCC---CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcC
Q 034072 2 GYELVSGGTENHLVLVNLKNK---GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRG 68 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~---gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG 68 (104)
+++++......++|-..+++. +++-.++.+.|++.|+.++....|.--.- ..-+|+-+.+-++||
T Consensus 347 ~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~--~~~lR~~~~~~~~~~ 414 (431)
T TIGR01788 347 PFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAED--IVVMRIVVREGFSRD 414 (431)
T ss_pred CEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCC--eEEEEEEecCCCCHH
Confidence 466664434566666555442 46778889999999999888777643111 135898765555565
No 182
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=33.82 E-value=2.4e+02 Score=22.24 Aligned_cols=64 Identities=8% Similarity=0.047 Sum_probs=36.9
Q ss_pred CceeeEeccCC----CCCHHHH-HHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNK----GIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~----gi~g~~a-~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.-.+|+++... ..+..+. ++.+++.||.+-.....+ .++.+||+.. ..+++|++--+.|++.++
T Consensus 330 g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~-----~~~~iRis~~------~~~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 330 AMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFE-----YPGFFRVVLT------VPVVMMEEACSRIQEFCE 398 (401)
T ss_pred eeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcC-----CCCeEEEEEc------CCHHHHHHHHHHHHHHHh
Confidence 44678886531 2244454 455679999985432211 1467999954 235676666666655543
No 183
>PRK06107 aspartate aminotransferase; Provisional
Probab=33.54 E-value=2.4e+02 Score=22.28 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=33.2
Q ss_pred CHHH-HHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 25 DGSR-VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 25 ~g~~-a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+..+ +++.+++.||.+. |+..-. .+..+||+... .+++|++-.+.|.+++.
T Consensus 348 ~~~~~~~~l~~~~gv~v~----pg~~Fg-~~~~iRis~~~------~~e~l~~~l~~l~~~l~ 399 (402)
T PRK06107 348 TDQDVVLYLLDSAGVAVV----QGTAYG-LSPYFRLSIAT------SLETLEEACARIERAVA 399 (402)
T ss_pred CHHHHHHHHHHhCCEEEe----CccccC-CCCeEEEEeCC------CHHHHHHHHHHHHHHHH
Confidence 4444 5677889999987 333211 13579999662 57887777777766654
No 184
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=33.13 E-value=64 Score=23.88 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcc--hhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT--PALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT--~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
..+.+.+.+.||.||...-|-...-..|+-+|-|- .+++|-|-++.=-+.|-+.|.+.+
T Consensus 84 ~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l 144 (205)
T TIGR01470 84 RRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLL 144 (205)
T ss_pred HHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 45667778889999987666554333344344441 235566776665555555554444
No 185
>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=33.13 E-value=2.1e+02 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.9
Q ss_pred CCeeeeCCCCCcee-eEeccCCCCCH
Q 034072 2 GYELVSGGTENHLV-LVNLKNKGIDG 26 (104)
Q Consensus 2 G~~vv~ggTd~Hlv-lvdl~~~gi~g 26 (104)
|.++|+++...+++ ++|+.|..-+.
T Consensus 82 G~Dlv~~~~~~~laAIlDlqPl~~~~ 107 (238)
T PRK13247 82 GIDLLWFGKKQKLVAVLDFQPLVQDK 107 (238)
T ss_pred ceeEeecCCCceEEEEEecCCCCcch
Confidence 78899988777788 89999876433
No 186
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=32.74 E-value=68 Score=24.84 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCC----CCC-CCCCCeeeEcchhHhhcC
Q 034072 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPG----DVS-AMVPGGIRMGTPALTSRG 68 (104)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~----d~~-~~~~sglRlGT~a~T~RG 68 (104)
.|++++|.| || -+|- + +....|+...-.+....+|. ... -....|+|||...+|.+-
T Consensus 57 ~G~D~iTlG--NH--~fD~---g----el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~ 118 (255)
T cd07382 57 AGVDVITMG--NH--TWDK---K----EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRV 118 (255)
T ss_pred cCCCEEEec--cc--ccCc---c----hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEeccc
Confidence 378888877 88 4442 1 56677777644443333443 221 113469999999888663
No 187
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.73 E-value=1.2e+02 Score=23.56 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=23.9
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 62 ~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
|.....-++++|.+.|.+.|.++|+.+.+.
T Consensus 186 P~~~~~~l~~~~~~~l~~a~~~vl~~ai~~ 215 (272)
T PRK14810 186 PQRLASSLSRERLRKLHDAIGEVLREAIEL 215 (272)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 444556689999999999999998877765
No 188
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=32.46 E-value=1.6e+02 Score=23.82 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
...+.+.+.+.||.+. |... ....|||. |+++ ++++|+++..+.+.++|.
T Consensus 371 ~~~l~~~~~~~Gv~i~----~~g~---~~~~irl~-P~l~---i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 371 AQKIQQRALAQGLLLL----TCGA---YGNVIRFL-YPLT---IPDAQFDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHCCcEEe----ecCC---CCCEEEEe-CCCc---CCHHHHHHHHHHHHHHHh
Confidence 4556667778999984 2111 13579998 4433 567999999999888774
No 189
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=32.31 E-value=98 Score=21.19 Aligned_cols=51 Identities=29% Similarity=0.430 Sum_probs=36.6
Q ss_pred CCceeeEeccC-CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 11 d~Hlvlvdl~~-~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
++-.+..-|+. +||.-..|...|+++||.-++ |+| -++++|++.|.++|..
T Consensus 9 ~~k~v~~aL~~i~GIG~~~a~~i~~~lgi~~~~---------------~~~-------~L~~~qi~~l~~~l~~ 60 (113)
T TIGR03631 9 NNKRVEIALTYIYGIGRTRARKILEKAGIDPDK---------------RVK-------DLTEEELNAIREEIEA 60 (113)
T ss_pred CCCEEeeeeeeeecccHHHHHHHHHHhCcCccc---------------ccc-------cCCHHHHHHHHHHHHh
Confidence 34444554533 699999999999999987653 333 4788888888888854
No 190
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=32.26 E-value=2.1e+02 Score=23.17 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
..+.+.|.+.||.+... .. ...-|||--+. -.+++|++++.+.+.+++..
T Consensus 380 ~~~~~~l~~~Gv~~~~~----g~---~~~~lRl~p~~----~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 380 EKILDKCLEKGLLFYLC----GN---AGNVLRMIPPL----TVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred HHHHHHHHHCCCEEeec----CC---CCCEEEEeCCc----cCCHHHHHHHHHHHHHHHHH
Confidence 45567778889987532 11 12469988544 35679999999999888853
No 191
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=32.06 E-value=55 Score=24.98 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=36.0
Q ss_pred CCceeeEeccCCCCCHHHHHHHHhhc-CceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~Le~~-gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~ 80 (104)
-+.++|+++... +..+..+.|.+. ||.+..-..|+- +..+||+. + ..+++++++..+-
T Consensus 304 ~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~pg~~~~~-----~~~iRi~~-a----~~~~e~~~~~~~~ 362 (363)
T PF00155_consen 304 AGFFLWVRLDPN--DAEELAQELLEEYGILVRPGSYFGV-----PGYIRISL-A----SHSEEDLEEALER 362 (363)
T ss_dssp BSSEEEEEESHH--HHHHHHHHHHHHHTEEEEEGGGGTS-----TTEEEEEG-G----CSCHHHHHHHHHH
T ss_pred CccEEEEEcccc--hHHHHHHHHHHhCCEEEEecCCCCC-----CCEEEEEe-c----cCCHHHHHHHHhh
Confidence 556677776433 445555555555 999875443333 45799996 2 3566788776654
No 192
>PRK10449 heat-inducible protein; Provisional
Probab=31.93 E-value=76 Score=22.17 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=30.2
Q ss_pred CCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 54 PGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 54 ~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
.+-|+||-.+.|+..+.+.+|.+.-..+.++|..+..+
T Consensus 78 ~~~l~~~~lasTrmaC~~~~~~~~E~~~~~~L~~~~~~ 115 (140)
T PRK10449 78 DGELTVKGLAMTRMMCADPQLNELDNTISEMLKKGAQV 115 (140)
T ss_pred CCEEEEcchhhhcccCCCHHHHHHHHHHHHHHhcCceE
Confidence 34699999999999998888887777777888765443
No 193
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=31.03 E-value=69 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 64 LTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 64 ~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
.+.|.|+++|++++.+.+.++...+++.
T Consensus 122 ~~p~~mt~~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 122 FTPRELSEEEIEQTIEDFARCAALAREA 149 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3568899999999999998888877664
No 194
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.84 E-value=77 Score=19.42 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=33.1
Q ss_pred CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHH
Q 034072 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 82 (104)
Q Consensus 25 ~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~ 82 (104)
.+..+++.|.+.||.+.-.++|..-+.--.-+||+ .++|.+.+-+++.
T Consensus 13 ~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~----------~~~d~~~i~~~l~ 60 (73)
T PF11823_consen 13 DAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRF----------EPEDLEKIKEILE 60 (73)
T ss_pred HHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEE----------ChhhHHHHHHHHH
Confidence 78899999999999999888888832211224444 3566666655553
No 195
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=30.75 E-value=2.7e+02 Score=22.13 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=37.3
Q ss_pred CceeeEeccCC---CC-CHHH-HHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNK---GI-DGSR-VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 12 ~Hlvlvdl~~~---gi-~g~~-a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.-.+|+++... ++ +..+ +++.+++.||.+-.....+ .++.+||+.. ..++++++--+.|.++++
T Consensus 339 g~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----~~~~iRis~~------~~~e~l~~al~~l~~~~~ 407 (412)
T PTZ00433 339 SMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFH-----MPGFTRLTIS------RPVEVLREAVERIKAFCE 407 (412)
T ss_pred eEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccC-----CCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 33567766421 22 3444 4455567999886332211 1457999953 246777777777766665
Q ss_pred H
Q 034072 87 L 87 (104)
Q Consensus 87 ~ 87 (104)
.
T Consensus 408 ~ 408 (412)
T PTZ00433 408 R 408 (412)
T ss_pred H
Confidence 3
No 196
>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=30.67 E-value=1.9e+02 Score=22.84 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=30.1
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHH-hhcCceeccC--CCCC
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKN--TVPG 47 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~L-e~~gI~vnkn--~lP~ 47 (104)
|.++|+++.- |++++|+.|..-......+.+ +......++. .+|+
T Consensus 101 GaDlV~~~~~-~~aIlDlqPl~~~~~~Y~~~~~~~L~~l~~~~~~~lP~ 148 (253)
T PRK13248 101 GVDFVSLPNS-HLLVLDFQPSLKIQNQYNNELLEKLIKLKNHCHSSLPL 148 (253)
T ss_pred ceeeeccCCC-cEEEEECCccccChHHHHHHHHhhccchhhhhHhhCCC
Confidence 7889987776 899999999874443444444 6666655553 2563
No 197
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=30.65 E-value=1.5e+02 Score=23.88 Aligned_cols=51 Identities=4% Similarity=-0.059 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
..+..+.|.+.||.+- |.... ++.|||+-+.. .+++|+++.-+.+.+++..
T Consensus 373 ~~~l~~~~~~~Gv~~~----~~~~~---~~~iRl~~~~~----~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 373 TAQIVARARDKGLILL----SCGPY---YNVLRILVPLT----IEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred HHHHHHHHHhCCCEEe----cCCCC---CCEEEEECCCC----cCHHHHHHHHHHHHHHHHh
Confidence 5666777778898864 32211 35799986532 4579999999999888864
No 198
>PRK08068 transaminase; Reviewed
Probab=30.53 E-value=2.5e+02 Score=22.00 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=29.0
Q ss_pred CceeeEeccCCCCCHHHHHHHHh-hcCceeccCCCCCCCCCCCCCeeeEcch
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLE-AVHIAANKNTVPGDVSAMVPGGIRMGTP 62 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le-~~gI~vnkn~lP~d~~~~~~sglRlGT~ 62 (104)
+-.+|+++.+ +++..+..+.|. +.||.+..-...+.. ....+||+..
T Consensus 323 ~~~~~v~~~~-~~~~~~~~~~l~~~~gi~v~pg~~f~~~---~~~~iRi~~~ 370 (389)
T PRK08068 323 SFFAWMPVPK-GYTSEQFADLLLEKAHVAVAPGNGFGEH---GEGYVRVGLL 370 (389)
T ss_pred eEEEEEECCC-CCCHHHHHHHHHHhCCEEEecchHhCcc---CCCeEEEEEc
Confidence 4457888753 457777766665 689998743221111 1357999963
No 199
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=29.82 E-value=68 Score=27.09 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccCcccccCC
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCFLP 104 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~~~~~~~~~~~~~~ 104 (104)
.++...|+++||.+...- +-+=-|=.|+..|+ ++.-+.||-+.-.=...+++.+|. |++-||.|
T Consensus 169 ~di~~~l~~~Gi~ie~~h----------hEva~gQ~EI~~~~---~~~l~~AD~~~~~K~vvk~vA~~h-G~~aTFMp 232 (443)
T COG0174 169 RDIVEALEAAGIEIEAIH----------HEVAPGQFEINLRF---DDALKAADQIVIFKYVVKEVAEKH-GLTATFMP 232 (443)
T ss_pred HHHHHHHHHCCCCcEecc----------ccccCCceEEecCC---CCHHHHHHHHHHHHHHHHHHHHHh-CCeEEEeC
Confidence 366778999999877541 11111235666663 455555776655445577888899 99999987
No 200
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=29.78 E-value=1.7e+02 Score=22.72 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=7.8
Q ss_pred CeeeeCCCCC
Q 034072 3 YELVSGGTEN 12 (104)
Q Consensus 3 ~~vv~ggTd~ 12 (104)
.++++||||-
T Consensus 26 a~ivaGGTdl 35 (291)
T PRK09971 26 AKLIAGGTDV 35 (291)
T ss_pred CEEEeccchH
Confidence 4688899884
No 201
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=95 Score=21.95 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=35.8
Q ss_pred eeEec-cCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 15 VLVNL-KNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 15 vlvdl-~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
+.+-| .=+||.-..+...|+++||.-+ .|+ ..++|+|+..|.+.|.+
T Consensus 15 v~iALt~IyGIG~~~a~~I~~~~gi~~~---------------~r~-------~eLteeei~~ir~~i~~ 62 (121)
T COG0099 15 VVIALTYIYGIGRRRAKEICKKAGIDPD---------------KRV-------GELTEEEIERLRDAIQN 62 (121)
T ss_pred EeehhhhhccccHHHHHHHHHHcCCCHh---------------Hhh-------ccCCHHHHHHHHHHHHh
Confidence 33444 3479999999999999997644 233 46899999999999983
No 202
>PRK06290 aspartate aminotransferase; Provisional
Probab=29.30 E-value=1.8e+02 Score=23.47 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=38.0
Q ss_pred ceeeEeccCC---C---CCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNK---G---IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~---g---i~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-.+|+++.+. + .+..+..+.|-+.++.+ .+|++.. .+.+||+....+ -.++++.++-+.++++|.
T Consensus 334 f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~---~~p~~~~---~~~lRi~~~~~~---~~~~~~~~~~~~l~~~~~ 404 (410)
T PRK06290 334 FYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLIS---TVPWDDA---GHFLRFSVTFEA---KDEEEEDRILEEIKRRLS 404 (410)
T ss_pred eEEEEECCCccccCCCCCCHHHHHHHHHHhCCEE---EECCccc---cCeEEEEEEccc---ccccchhHHHHHHHHHHh
Confidence 3456777532 1 25556666665555444 2466531 257999965433 256778777777777665
No 203
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=29.19 E-value=39 Score=24.31 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=21.5
Q ss_pred eEeccCCCC------CHHHHHHHHhhcCceeccCC
Q 034072 16 LVNLKNKGI------DGSRVEKVLEAVHIAANKNT 44 (104)
Q Consensus 16 lvdl~~~gi------~g~~a~~~Le~~gI~vnkn~ 44 (104)
+.|...+|+ ..++|.++|+++|.+|.-+.
T Consensus 36 iAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~d 70 (142)
T COG4747 36 IADTGDFGIIRMVVDRPDEAHSVLEEAGFTVRETD 70 (142)
T ss_pred eccccCcceEEEEcCChHHHHHHHHHCCcEEEeee
Confidence 344445554 67899999999999988664
No 204
>PLN00144 acetylornithine transaminase
Probab=29.04 E-value=2.4e+02 Score=22.46 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=41.0
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-++++.+. .+.......+.+.||.+... .. ...|||.-+. + ++++|+++..+.+.++|.
T Consensus 321 ~~~~l~l~---~~~~~~~~~~~~~Gv~i~~~----~~----~~~lrl~p~~-~---~~~~~i~~~~~~l~~~l~ 379 (382)
T PLN00144 321 LLVGIQLD---VPAGPLVDACRDSGLLVLTA----GK----GDVVRLVPPL-V---ISEAELEQAVEILADCLP 379 (382)
T ss_pred eEEEEEec---CccHHHHHHHHHCCeEEeec----CC----CCEEEEeCCC-c---cCHHHHHHHHHHHHHHHH
Confidence 35666652 34567788889999998533 11 2579998544 2 337999999999988875
No 205
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=28.82 E-value=75 Score=24.25 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=23.1
Q ss_pred EcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 59 MGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 59 lGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
+...-+.++|++++++..|++.+...+..
T Consensus 194 ~n~~g~~~~~~~~~~~~~i~~a~~~~~~~ 222 (262)
T PRK05289 194 LNLVGLKRRGFSREEIHALRRAYKLLYRS 222 (262)
T ss_pred cchhhhhhCCCCHHHHHHHHHHHHHHHHc
Confidence 45556889999999999999888766653
No 206
>PRK12414 putative aminotransferase; Provisional
Probab=28.77 E-value=2.8e+02 Score=21.74 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=35.0
Q ss_pred eeeEeccCC--CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 14 LVLVNLKNK--GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 14 lvlvdl~~~--gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
.+|+++.+. ..+...+.+.|++.||.+-.-..-+ ........+||+... .++++++-.+.|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~-~~~~~~~~iRis~~~------~~~~~~~~~~rl 381 (384)
T PRK12414 319 FMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFY-TDGTDTGLIRLSFSK------DDATLVEGARRL 381 (384)
T ss_pred EEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhc-CCCCCCCEEEEEecC------CHHHHHHHHHHH
Confidence 455677542 2356667788999999886432111 111113569999662 366665554444
No 207
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=28.75 E-value=3e+02 Score=21.94 Aligned_cols=68 Identities=25% Similarity=0.236 Sum_probs=44.3
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCC----CC-------------CCeeeEcchhHhhcCCCHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSA----MV-------------PGGIRMGTPALTSRGFVEEDFA 75 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~----~~-------------~sglRlGT~a~T~RG~~e~dm~ 75 (104)
|++++.+.+ +.+-.+..+.|.+.||.+.....|...-+ .. ..+|.|.. --+|+++|++
T Consensus 291 ~~~~i~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~----~~~l~~~~~~ 365 (376)
T TIGR02379 291 HMFYIKLKD-EDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPL----YYGLSKEDQA 365 (376)
T ss_pred EEEEEEECC-cCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccC----CCCCCHHHHH
Confidence 677776643 45789999999999999875444443211 00 11233332 2368899999
Q ss_pred HHHHHHHHHH
Q 034072 76 KVAYFFDAAV 85 (104)
Q Consensus 76 ~Ia~~i~~~l 85 (104)
.|.+.|.+++
T Consensus 366 ~i~~~i~~~~ 375 (376)
T TIGR02379 366 RVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHh
Confidence 9998887654
No 208
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=28.65 E-value=26 Score=31.36 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=24.3
Q ss_pred CCCCCceeeEe---ccCCCCCHHHHHHHHhhcCce
Q 034072 8 GGTENHLVLVN---LKNKGIDGSRVEKVLEAVHIA 39 (104)
Q Consensus 8 ggTd~Hlvlvd---l~~~gi~g~~a~~~Le~~gI~ 39 (104)
=|||+|.-+|| +...|+.|-+||..+--.-|+
T Consensus 205 VGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiS 239 (892)
T KOG0452|consen 205 VGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPIS 239 (892)
T ss_pred ccccCcceeecccceeeccccceehhhhhhcCchh
Confidence 47999999999 456788888998877544443
No 209
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=28.19 E-value=2.2e+02 Score=23.12 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=41.2
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
.++.+.+.+.. ....+.+.|.+.||.+..... ...-|||..+... +++|++++.+.+.++|...
T Consensus 354 l~~~i~l~~~~-~~~~l~~~~~~~Gv~~~~~~~-------~~~~lr~~p~l~~----t~~ei~~~~~~l~~~l~~~ 417 (425)
T PRK09264 354 MMQGIDFGDGE-LAGKIAAEAFENGLIIETSGP-------EDEVVKLLPPLTI----DEEELEEGLDILEEAVAEV 417 (425)
T ss_pred cEEEEEecChH-HHHHHHHHHHHCCCEEeccCC-------CCCEEEEeCCCCC----CHHHHHHHHHHHHHHHHHH
Confidence 34456554322 345667778888999864211 1246999844332 3799999999999988753
No 210
>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated
Probab=28.07 E-value=2.9e+02 Score=21.48 Aligned_cols=83 Identities=18% Similarity=0.101 Sum_probs=45.2
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCH-HHHHHHHhhcCceec-c-CCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDG-SRVEKVLEAVHIAAN-K-NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g-~~a~~~Le~~gI~vn-k-n~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia 78 (104)
|.++|+++.--+++++|+.|..-+- ....+.|+......- + .-+|... -=++-..+=+|.-++++-..+-
T Consensus 99 GaDlv~~~~~~slaIlDlqPl~~~~~~~Y~~~l~~l~~~~f~~~r~lp~wg-------~~FSp~~lf~R~~~~~e~~~~~ 171 (243)
T PRK02816 99 GADLVAGRGGISAAIVDLSPVSRTLPDAYIKALSALPKPAFSQPRELPEWG-------DIFSPYCLFIRPTNAEEENQFL 171 (243)
T ss_pred ceeEeecCCceeEEEEecCcccccchHHHHHHHHhhcchhhhccccCCCcc-------CccCcceEEecCCCHHHHHHHH
Confidence 7889987777779999999876322 255555554433211 1 1233322 1233334444555666655555
Q ss_pred HHHHHHHHHHHHH
Q 034072 79 YFFDAAVKLTVKI 91 (104)
Q Consensus 79 ~~i~~~l~~~~~~ 91 (104)
+.+.+-|+.=.++
T Consensus 172 ~~f~~yL~~~~~~ 184 (243)
T PRK02816 172 DRVDEYLSIHCQL 184 (243)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555543333
No 211
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.04 E-value=1.1e+02 Score=25.69 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 22 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 22 ~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
.|++.+++.+..|+.||.+-++ | ||+.+ |+++..++.+|+-|.+++
T Consensus 351 ~Gls~~QV~rLree~~IY~v~s------------G-Ri~va-----Gl~~~ni~~va~ai~~v~ 396 (396)
T COG1448 351 TGLSPEQVDRLREEFGIYLVAS------------G-RINVA-----GLNTSNIDYVAKAIAAVL 396 (396)
T ss_pred CCCCHHHHHHHHHhccEEEecC------------C-eeeec-----cCChhhHHHHHHHHHhhC
Confidence 3899999999999999998754 4 88866 566678889999887753
No 212
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=28.03 E-value=2.3e+02 Score=26.20 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=51.2
Q ss_pred Ceeee---CCCCCceeeEeccCC----CCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHH
Q 034072 3 YELVS---GGTENHLVLVNLKNK----GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFA 75 (104)
Q Consensus 3 ~~vv~---ggTd~Hlvlvdl~~~----gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~ 75 (104)
|+++. .|+--|=+++|+|++ ||...++.++|-..|.-.-..+-|-. .-|-|- .|- -+|+.
T Consensus 837 Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~------gtLMIE---PTE----SE~k~ 903 (1001)
T KOG2040|consen 837 YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVA------GTLMIE---PTE----SEDKA 903 (1001)
T ss_pred cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccC------CceEec---cCc----cccHH
Confidence 56655 567789999999774 78999999999999988766554432 223332 111 14555
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034072 76 KVAYFFDAAVKLTVKIKS 93 (104)
Q Consensus 76 ~Ia~~i~~~l~~~~~~~~ 93 (104)
++-++-...+.+-+||.+
T Consensus 904 ElDRfcdAliSIreEI~~ 921 (1001)
T KOG2040|consen 904 ELDRFCDALISIREEIAQ 921 (1001)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555666667744
No 213
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=27.78 E-value=71 Score=23.81 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=32.3
Q ss_pred eEeccCCCCCHHHHHHHHhhcCceeccCCCCCC--CCCCCCCeeeEc-chhHhhcCCCHHHHHHHH
Q 034072 16 LVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD--VSAMVPGGIRMG-TPALTSRGFVEEDFAKVA 78 (104)
Q Consensus 16 lvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d--~~~~~~sglRlG-T~a~T~RG~~e~dm~~Ia 78 (104)
++|.....-.-..+.+.|++.||..|+-. .. -....++|++|- +.. .-++++++.+.|-
T Consensus 84 V~D~t~~~~~~~~~~~~l~~~gi~l~~~~--~~v~~~~~~~ggi~~~~~~~--~~~~~~~~v~~~l 145 (233)
T cd01896 84 VLDATKPEGHREILERELEGVGIRLNKRP--PNITIKKKKKGGINITSTVP--LTKLDEKTIKAIL 145 (233)
T ss_pred EecCCcchhHHHHHHHHHHHcCceecCCC--CeEEEEEEecCCEEEeccCC--CCCCCHHHHHHHH
Confidence 45543322244567788999999777643 22 123335678873 222 2245666665544
No 214
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=27.70 E-value=79 Score=24.88 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=27.5
Q ss_pred CCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 53 VPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 53 ~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
.+|.+......-+-|-|+++|++++-+-+.++.+.+++.
T Consensus 128 ~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~~a 166 (336)
T cd02932 128 APSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAVEA 166 (336)
T ss_pred CCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 345554443344568899999999988888887777654
No 215
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=27.52 E-value=1.1e+02 Score=22.51 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=34.6
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhh
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS 66 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~ 66 (104)
.|.++++|..-..+ .-+.+++.+..+++-+|.. .| ..-|||-.|.+|.
T Consensus 51 ~~~~~l~I~p~D~~-~~~~I~kAI~~s~lglnP~---~d-----g~~Iri~iP~lT~ 98 (176)
T TIGR00496 51 PDARTLVIQPFDKS-NINAIEKAIQRSDLGLNPN---ND-----GSVIRVNFPPLTE 98 (176)
T ss_pred CCCCEEEEecCChh-hHHHHHHHHHHCCCCCCcc---cC-----CCEEEecCCCCCH
Confidence 36677777655445 6788999999999877754 12 2359999999884
No 216
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=27.18 E-value=85 Score=25.93 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=56.4
Q ss_pred CCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCC-CCCC-C-------------CCCCCCeeeEcchhHhhcCCCHH
Q 034072 8 GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT-VPGD-V-------------SAMVPGGIRMGTPALTSRGFVEE 72 (104)
Q Consensus 8 ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~-lP~d-~-------------~~~~~sglRlGT~a~T~RG~~e~ 72 (104)
-|-++|..+-|- ..++-.+.||..|-.|++.. .|.- + .+....|+ ||+-.+
T Consensus 122 ~Gyk~~I~mPdd-----qs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi---------~g~fAd 187 (391)
T KOG1481|consen 122 LGYKCHIYMPDD-----QSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGI---------RGWFAD 187 (391)
T ss_pred cCcceEEECCCh-----HHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCc---------ccchhh
Confidence 356788777652 45667789999999999864 4542 1 11112244 489999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccc
Q 034072 73 DFAKVAYFFDAAVKLTVKIKSETQGSYQCF 102 (104)
Q Consensus 73 dm~~Ia~~i~~~l~~~~~~~~~~~~~~~~~ 102 (104)
+|+.+|+|.+.-=...-||-.+++|.-.-|
T Consensus 188 QFeN~AN~~aHyetTGPEIw~QtkGniDaF 217 (391)
T KOG1481|consen 188 QFENVANWLAHYETTGPEIWHQTKGNIDAF 217 (391)
T ss_pred hhcCHHHHHHHhcCcCcHHHHhhcCCcceE
Confidence 999999999887767778877777765444
No 217
>PRK06062 hypothetical protein; Provisional
Probab=27.17 E-value=2.1e+02 Score=23.64 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
..+.+.|.+.||.+.. + ..-|||. |.++ ++++|+.++.+.+.++|...
T Consensus 399 ~~~~~~l~~~Gvl~~~---~-------~~~lrl~-ppl~---~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 399 AAVKAACKERGLLPFV---N-------GNRIHVV-PPCT---VTEDEVREGLAILDAALAVA 446 (451)
T ss_pred HHHHHHHHHCCcEEee---c-------CCEEEEE-CCcc---CCHHHHHHHHHHHHHHHHHh
Confidence 4667778889998642 1 1348995 4444 68899999999999988754
No 218
>PRK14012 cysteine desulfurase; Provisional
Probab=27.04 E-value=1.6e+02 Score=23.31 Aligned_cols=62 Identities=11% Similarity=0.224 Sum_probs=40.5
Q ss_pred CHHHHHHHHhhcCceeccCCCCCCC------------CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 034072 25 DGSRVEKVLEAVHIAANKNTVPGDV------------SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVK 90 (104)
Q Consensus 25 ~g~~a~~~Le~~gI~vnkn~lP~d~------------~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~ 90 (104)
++.+..+.|...+|....-..|... .....+.|||+....+ +++|++.+.+.|.++++...+
T Consensus 309 ~~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~----t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 309 EGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT----TEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred CHHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCC----CHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777666655443333211 0112467999987764 679999999999998875443
No 219
>PLN02624 ornithine-delta-aminotransferase
Probab=26.67 E-value=2.6e+02 Score=23.17 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
..++.+.|.+.||.+. |.. ...|||..+. .++++|++++.+.|.+++..
T Consensus 396 a~~~~~~L~e~GV~v~----p~~-----~~~lR~~p~l----~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 396 AYDVCLKLKERGLLAK----PTH-----DTIIRLAPPL----SISEDELQECSKALSDVLEH 444 (474)
T ss_pred HHHHHHHHHhCCeEEe----cCC-----CCEEEEECCc----cCCHHHHHHHHHHHHHHHHH
Confidence 4567778899999985 322 2469997433 27889999999999888865
No 220
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=26.66 E-value=76 Score=18.50 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHH
Q 034072 68 GFVEEDFAKVAYFFDA 83 (104)
Q Consensus 68 G~~e~dm~~Ia~~i~~ 83 (104)
.++++|+..|+.+|..
T Consensus 74 ~ls~~e~~~l~ayl~s 89 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRS 89 (91)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999854
No 221
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=26.56 E-value=2.8e+02 Score=22.52 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
..+..+.|.+.||.+... . ++.|||..+- ..+++|++++.+.+.++|..
T Consensus 355 a~~i~~~l~~~Gvlv~~~----g-----~~~lRl~Ppl----~it~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 355 AGAILDLAAEHGLLLLQA----G-----PDVLRFVPAL----NLTDAELADGLARLRLALAD 403 (408)
T ss_pred HHHHHHHHHHCCeEEeeC----C-----CCEEEEcCCc----cCCHHHHHHHHHHHHHHHHH
Confidence 456667788999998532 1 2569997443 36789999999999998864
No 222
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.45 E-value=92 Score=24.02 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 53 VPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 53 ~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
.+|.+...-...+-|-|+++|+++|-+-+.++.+.+++.
T Consensus 115 ~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~a 153 (327)
T cd02803 115 APSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEA 153 (327)
T ss_pred CCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 345554444445678899999999998888888777664
No 223
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=26.24 E-value=97 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=25.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034072 65 TSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95 (104)
Q Consensus 65 T~RG~~e~dm~~Ia~~i~~~l~~~~~~~~~~ 95 (104)
|+..-+-.|++++|+++-++..+++++-+++
T Consensus 221 t~nntkladi~e~aelvlqiakn~kei~qev 251 (254)
T PF03207_consen 221 TTNNTKLADIKEAAELVLQIAKNAKEIVQEV 251 (254)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677999999999988888888886554
No 224
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=26.23 E-value=2e+02 Score=22.23 Aligned_cols=61 Identities=30% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceecc---CCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHH
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANK---NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAK 76 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnk---n~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~ 76 (104)
.-+.++.+.+ .++++.++.+.|++.||.+.. +.-|.....-...+||++....++ ++|+++
T Consensus 307 ~~~~i~~~~~--~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt----~~dv~~ 370 (371)
T PF00266_consen 307 RRPSIVSFNL--PGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNT----EEDVDR 370 (371)
T ss_dssp BGTTEEEEEE--TTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSS----HHHHHH
T ss_pred cccceEEEee--cCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCC----HHHHhh
Confidence 3456666766 477999999999999999886 110000000012689999777665 466654
No 225
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=26.14 E-value=1.5e+02 Score=21.37 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=35.8
Q ss_pred eeeEeccC-CCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 14 LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 14 lvlvdl~~-~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.+.+-|+. +||.-..|...|+++||..+ .|+| -++++++..|.++|.+
T Consensus 22 ~i~~aLt~IyGIG~~~a~~Ic~~lgi~~~---------------~~~~-------~Lt~~qi~~l~~~i~~ 70 (149)
T PRK04053 22 PVEYALTGIKGIGRRTARAIARKLGLDPN---------------AKLG-------YLSDEEIEKIEEALED 70 (149)
T ss_pred EEeeeccccccccHHHHHHHHHHcCcCCC---------------CccC-------cCCHHHHHHHHHHHHh
Confidence 34444433 69999999999999998766 3333 4788999999988864
No 226
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=25.93 E-value=3.3e+02 Score=22.25 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=35.9
Q ss_pred CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 25 ~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+...+.+.|.+.|+.+... + .-|||- |++| ++++|++++.+.+.++|.
T Consensus 372 ~~~~~~~~~~~~Gl~~~~~---g-------~~l~~~-PpL~---it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 372 DMEEATQAAVDHGVWLRPF---G-------RLVYVM-PPYI---TTSEQIAQICAALAAAVK 419 (422)
T ss_pred cHHHHHHHHHHCCeEEEec---C-------CEEEEE-CCcc---CCHHHHHHHHHHHHHHHh
Confidence 3567777888899998642 1 248885 6666 578999999999888875
No 227
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=25.61 E-value=1.6e+02 Score=19.58 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 21 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 21 ~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
=+||.-..|...|.+.||.-++. +| -++++|...|.++|.+
T Consensus 20 IyGIG~~~A~~Ic~~lgi~~~~~---------------~~-------~Ls~~~i~~l~~~i~~ 60 (107)
T PF00416_consen 20 IYGIGRRKAKQICKKLGINPNKK---------------VG-------DLSDEQIDKLRKIIEK 60 (107)
T ss_dssp STTBCHHHHHHHHHHTTS-SSSB---------------TT-------TSTHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHcCCChhhh---------------cc-------cCCHHHHHHHHHHHHH
Confidence 36999999999999999977633 33 4788999999988877
No 228
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=25.56 E-value=2.4e+02 Score=23.61 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHhhcCceecc---CCCC----C-------CCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 22 KGIDGSRVEKVLEAVHIAANK---NTVP----G-------DVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 22 ~gi~g~~a~~~Le~~gI~vnk---n~lP----~-------d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
.|+.|....-.|+..||-+.. |+-+ . -+.....+.|||+-...| +++|+...++.+.+++..
T Consensus 302 ~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~t----t~eei~~~~~~l~~~i~~ 377 (386)
T COG1104 302 PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFT----TEEEIDAAAEALKEIIKR 377 (386)
T ss_pred CCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCC----CHHHHHHHHHHHHHHHHH
Confidence 488999999999999999875 2211 1 011223478999966554 579999999999998887
Q ss_pred HHHHh
Q 034072 88 TVKIK 92 (104)
Q Consensus 88 ~~~~~ 92 (104)
..++.
T Consensus 378 lr~~~ 382 (386)
T COG1104 378 LRELS 382 (386)
T ss_pred Hhhhc
Confidence 66553
No 229
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=25.40 E-value=3.3e+02 Score=21.19 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=34.0
Q ss_pred CceeeEeccCCCCCHHHHHHH-HhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~-Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
+-.+|+++.+ +++..+..+. +++.||.+..-..-+.. ....+||+.. ..+++|.+.-+.|
T Consensus 322 ~~~~~v~~~~-~~~~~~l~~~ll~~~gi~v~~g~~f~~~---~~~~~Ris~~------~~~~~l~~~l~~l 382 (385)
T PRK09276 322 TFYVWAPVPK-GYTSAEFATLLLDKAGVVVTPGNGFGEY---GEGYFRIALT------VPDERIEEAVERI 382 (385)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHHhCCEEECCchhhCCC---CCCeEEEEeC------CCHHHHHHHHHHH
Confidence 4457888743 5677775554 56789998643211111 1347999853 2455555444443
No 230
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=25.29 E-value=2.7e+02 Score=22.24 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
...+.+.|.+.||.+... . +..|||.-+.. .+++|++++.+.+.+++.
T Consensus 351 ~~~~~~~l~~~Gv~v~~~----g-----~~~lRl~p~~~----~t~~~i~~~~~~l~~~l~ 398 (406)
T PRK12381 351 AKQISQEAAKAGVMVLIA----G-----PNVVRFAPALN----ISEEEITTGLDRFARACE 398 (406)
T ss_pred HHHHHHHHHHCCcEEeeC----C-----CCEEEEeCCcc----CCHHHHHHHHHHHHHHHH
Confidence 466778888999998522 1 24699975442 457999999999988885
No 231
>PRK09248 putative hydrolase; Validated
Probab=25.14 E-value=60 Score=24.24 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=17.7
Q ss_pred eeCCCCCceeeEeccCCCCCHHHHHHHHhhcCce
Q 034072 6 VSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIA 39 (104)
Q Consensus 6 v~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~ 39 (104)
++.|+|.|- ....| ...++.+.++++|+.
T Consensus 188 ~~~gSDAH~----~~~vg-~~~~~~~~~~~~g~~ 216 (246)
T PRK09248 188 VALGSDAHI----AFDIG-NFEEALKILDEVGFP 216 (246)
T ss_pred EEEeCCCCC----hhhhc-cHHHHHHHHHHcCCC
Confidence 456677773 23345 566777777777765
No 232
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=25.13 E-value=1e+02 Score=23.62 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=28.5
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCC
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPG 47 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~ 47 (104)
--+++|++=.|++|.+.+..|.+.|+..---.+-|
T Consensus 50 GclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTG 84 (202)
T COG4566 50 GCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTG 84 (202)
T ss_pred CeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeC
Confidence 35788999999999999999999998765554443
No 233
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=25.11 E-value=2.5e+02 Score=23.73 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
...+.+.|.+.||.+... ...|||. |++| ++++|+.++.+.+.++|...
T Consensus 444 ~~~i~~~~~~~Gvl~~~~----------g~~lrl~-Ppl~---it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 444 GAYFGAECKKRGMLVRVA----------GDNIMMS-PPLI---ITPEEVDELISIYGKALKAT 492 (504)
T ss_pred HHHHHHHHHhCCcEEEec----------CCEEEEE-CCCC---CCHHHHHHHHHHHHHHHHHH
Confidence 445667778889998642 1358986 4433 67899999999999988754
No 234
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=24.92 E-value=3.3e+02 Score=21.13 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCceeeEeccCCCCCHHHHHHH-HhhcCceeccCCCCCCCCCCCCCeeeEcch
Q 034072 11 ENHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTP 62 (104)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~a~~~-Le~~gI~vnkn~lP~d~~~~~~sglRlGT~ 62 (104)
.+-.+|+++.+ +++..+..+. |++.||.+.....-+.. ....+||+..
T Consensus 319 ~~~~~~~~l~~-~~~~~~~~~~ll~~~gi~v~~g~~f~~~---~~~~~Ris~~ 367 (383)
T TIGR03540 319 ATFYVWVPVPE-GYTSAEFAARLLEETGVVVTPGVGFGEY---GEGYIRISLT 367 (383)
T ss_pred cceEEEEECCC-CCCHHHHHHHHHHHCCEEEecchhhCcc---CCCeEEEEec
Confidence 35567888753 6777776665 57899988743221111 1346999964
No 235
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=24.75 E-value=1.2e+02 Score=21.56 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=11.9
Q ss_pred eeEcchhHhhcCCCHHH
Q 034072 57 IRMGTPALTSRGFVEED 73 (104)
Q Consensus 57 lRlGT~a~T~RG~~e~d 73 (104)
+++=.++..+||..++|
T Consensus 75 v~~C~~ca~~RGv~~~~ 91 (126)
T COG1553 75 VKLCVACALRRGVTEEE 91 (126)
T ss_pred EeeeHHHHHhcCCccch
Confidence 55556777777777776
No 236
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=24.73 E-value=54 Score=17.38 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHhhcCc
Q 034072 23 GIDGSRVEKVLEAVHI 38 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI 38 (104)
| =|+..+++|++.||
T Consensus 18 G-IG~kt~~kL~~~GI 32 (32)
T PF11798_consen 18 G-IGKKTAKKLNKLGI 32 (32)
T ss_dssp T-S-HHHHHHHHCTT-
T ss_pred C-ccHHHHHHHHHccC
Confidence 5 46777888999887
No 237
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=24.71 E-value=3e+02 Score=21.78 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhhcCceeccCCCCCCC------------CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 23 GIDGSRVEKVLEAVHIAANKNTVPGDV------------SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI~vnkn~lP~d~------------~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
++++......|....|.....+-|... .....+.||++.... -+++|++.+.+.|.+++...
T Consensus 305 ~~~~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~----~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 305 YVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRF----TTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred CcCHHHHHHhcCCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCC----CCHHHHHHHHHHHHHHHHHH
Confidence 457777777775433332222222211 001136799998776 45699999999999887654
No 238
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=24.68 E-value=68 Score=20.61 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=19.7
Q ss_pred EcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 59 MGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 59 lGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
|=+.-|-++|++.+++..|-+....+.
T Consensus 18 lN~vGLrR~Gfs~~~i~~l~~ayr~l~ 44 (83)
T PF13720_consen 18 LNLVGLRRRGFSKEEISALRRAYRILF 44 (83)
T ss_dssp E-HHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 445568899999999999988765544
No 239
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=24.55 E-value=2.8e+02 Score=23.78 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCceeccCCCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
-+-+.+++++.||.+ +||.. .. ....+||.... ..+++..++++.|.+++.
T Consensus 464 ~~~~~~L~~e~gV~v----~PG~~Fg~-~~~~vRisla~-----l~~~~~~~~~~rl~~~~~ 515 (521)
T TIGR03801 464 VDVLFRLAEETGIVL----LPGGGFGG-PEWSVRVSLAN-----LNEYDYAEIGRAIRKILD 515 (521)
T ss_pred HHHHHHHHHhCCEEE----eCchhcCC-CCCeEEEEecC-----CCHHHHHHHHHHHHHHHH
Confidence 345667788889976 46652 11 13459998532 567899999999988774
No 240
>PRK08354 putative aminotransferase; Provisional
Probab=24.39 E-value=3.2e+02 Score=20.73 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=35.4
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
.-++++++. +..+..+.|.+.||.+.....++. ++.+||+.. .+++++++.+-+.+
T Consensus 253 ~~~~~~~~~----~~~~~~~~l~~~gv~v~~g~~f~~-----~~~iRi~~~-------~~~~~~~l~~al~~ 308 (311)
T PRK08354 253 ANFFIKDVG----DAEKFVEFLKRNGILVRDCTSFGL-----PGYIRFSVR-------DREENEKLIRALRE 308 (311)
T ss_pred CcEEEEECC----CHHHHHHHHHHCCeEEEecccCCC-----CCeEEEEeC-------CHHHHHHHHHHHHH
Confidence 345567653 456777788899999987654432 367999953 23456655555543
No 241
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=24.28 E-value=45 Score=25.02 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=40.0
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCC---CCCCC-----CCCeeeE-cchhH--hhcCCCHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPG---DVSAM-----VPGGIRM-GTPAL--TSRGFVEEDFAKVAYFFD 82 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~---d~~~~-----~~sglRl-GT~a~--T~RG~~e~dm~~Ia~~i~ 82 (104)
.+.|.+|....-..++-+.|++.|+..--...|. .+... ...-+|+ |.... ....++++|++++|+.|.
T Consensus 119 ~~avE~R~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~ 198 (230)
T PF01904_consen 119 RYAVEFRHPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIR 198 (230)
T ss_dssp -EEEE--BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHH
T ss_pred ceEEecCCcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHH
Confidence 4567777766666888999999999855443333 32111 1124776 55555 566789999999999997
Q ss_pred HHHH
Q 034072 83 AAVK 86 (104)
Q Consensus 83 ~~l~ 86 (104)
+...
T Consensus 199 ~~~~ 202 (230)
T PF01904_consen 199 AWAA 202 (230)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7554
No 242
>TIGR01634 tail_P2_I phage tail protein, P2 protein I family. This model represents the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria. This alignment is built as a fragment model and identifies some phage tail proteins with strong but local similarity to members of the seed alignment.
Probab=24.02 E-value=1.6e+02 Score=20.97 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=39.6
Q ss_pred cCCCCCHHHHHHHHhhcCceeccCCCCCC-C-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 20 KNKGIDGSRVEKVLEAVHIAANKNTVPGD-V-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 20 ~~~gi~g~~a~~~Le~~gI~vnkn~lP~d-~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
+..| +-..+++.|+..|..+. ...+- . ++-.|.-+||- ..+.-+|.++++..++.++|.++
T Consensus 73 r~kG-T~~avr~~l~~lg~~~~--i~EW~e~~p~g~P~tF~i~-~~~~~~g~~~~~~~~~~~~i~~~ 135 (139)
T TIGR01634 73 RHKG-TIGAVRRVVEPFGGIVN--ITEWWQTGPPGPPGTFELT-LTVSGSGGTEETYLEVERLIADV 135 (139)
T ss_pred HHcC-CHHHHHHHHHHcCCCeE--EeehhccCCCCCCeEEEEE-EEccCCCCCHHHHHHHHHHHHhc
Confidence 4457 88889999999884332 23332 1 22235556654 23356899999999988887653
No 243
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=23.95 E-value=1.5e+02 Score=22.25 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=46.0
Q ss_pred CceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCC-----CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-----SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~-----~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
-+++++.+.... =-.++.+.+++.+|.||...-|... .-...++|.|+ ++|.|-++.=-+.|=+.|...|
T Consensus 73 ~~lviaAt~d~~-ln~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~ia---IsT~G~sP~la~~ir~~Ie~~l 147 (210)
T COG1648 73 AFLVIAATDDEE-LNERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIA---ISTGGKSPVLARLLREKIEALL 147 (210)
T ss_pred ceEEEEeCCCHH-HHHHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEE---EECCCCChHHHHHHHHHHHHHc
Confidence 566676654434 3356778889999999988777643 23344567776 7788887766555555555544
No 244
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=23.77 E-value=2.4e+02 Score=22.48 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
.....+.|.+.||.+... + +.-||+..+. ..+++|++++.+.+.+++..
T Consensus 347 ~~~~~~~l~~~Gv~~~~~---g------~~~lR~~p~~----~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 347 AKQFVNAAAEEGVIALIA---G------PNVVRFAPSL----VISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred HHHHHHHHHHCCeEEeec---C------CCEEEEeCCC----CCCHHHHHHHHHHHHHHHHH
Confidence 456677788889998642 1 1359997433 36889999999999888753
No 245
>PF08085 Entericidin: Entericidin EcnA/B family; InterPro: IPR012556 This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing [].; GO: 0009636 response to toxin, 0016020 membrane
Probab=23.75 E-value=58 Score=16.17 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=11.8
Q ss_pred hhcCCCHHHHHHHHHHHHH
Q 034072 65 TSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 65 T~RG~~e~dm~~Ia~~i~~ 83 (104)
|.+|++ +|++..++.|.+
T Consensus 2 Tv~G~G-~Di~~~G~ai~~ 19 (21)
T PF08085_consen 2 TVRGVG-KDIQSAGEAIER 19 (21)
T ss_pred ccchhh-HhHHHHHHHHhc
Confidence 567776 467777776654
No 246
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=23.61 E-value=4.3e+02 Score=21.93 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=39.7
Q ss_pred eeeEeccCC--CC--CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNK--GI--DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 14 lvlvdl~~~--gi--~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
.+|+++... ++ +...+.+.|++.||.|-.-..-+.. .+.-+||+.. ..++++++-.+.|.+++.
T Consensus 446 y~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~---~~~~~Ris~~------~~~~~l~~a~~rl~~~~~ 513 (517)
T PRK13355 446 YIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWD---KPDHFRVVYL------PRLEDLEDAMDRLADFFS 513 (517)
T ss_pred EEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCC---CcCEEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence 456676432 11 3456778899999987543221111 2346999962 567888887777777665
No 247
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=23.60 E-value=1.1e+02 Score=20.37 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=21.6
Q ss_pred eeeEecc--CC----CCCHHHHHHHHhhcCce
Q 034072 14 LVLVNLK--NK----GIDGSRVEKVLEAVHIA 39 (104)
Q Consensus 14 lvlvdl~--~~----gi~g~~a~~~Le~~gI~ 39 (104)
-+|||+| |. |++-..++..|+++||.
T Consensus 15 ~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~ 46 (122)
T PF04343_consen 15 RVLVDVRLWPRSRKPGFNKEDLASFLEEAGIE 46 (122)
T ss_pred eEEEEECCCCCCCCCCCCHHHHHHHHHHCCce
Confidence 3788964 45 78999999999999987
No 248
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=74 Score=26.96 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH----h-hhccCccccc
Q 034072 67 RGFVEEDFAKVAYFFDAAVKLTVKI----K-SETQGSYQCF 102 (104)
Q Consensus 67 RG~~e~dm~~Ia~~i~~~l~~~~~~----~-~~~~~~~~~~ 102 (104)
-|+.|.||.+|++-|+.=+-..+++ + +|+|-+++|+
T Consensus 360 ~~f~endf~~viR~V~gDlVesV~lid~F~hpKtgk~S~CY 400 (436)
T KOG2783|consen 360 KGFDENDFYDVIRTVAGDLVESVKLIDQFTHPKTGKTSLCY 400 (436)
T ss_pred cCCChhHHHHHHHHHhhhhhhhhhhhhhccCCccCceeeEE
Confidence 6999999999999888766655555 2 5887888997
No 249
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=23.37 E-value=1.5e+02 Score=21.69 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=33.7
Q ss_pred CCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhh
Q 034072 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS 66 (104)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~ 66 (104)
-|.++++|..-..+ .-+.+++.+..+++-+|.+ .. ..-|||-.|.+|.
T Consensus 56 ~~~~~l~I~p~D~~-~i~~I~kAI~~s~l~l~P~----~d----g~~iri~iP~lT~ 103 (179)
T cd00520 56 PEPRTIVINPFDKS-AIKAIEKAILNSDLGLNPN----ND----GAVIRVNLPPLTE 103 (179)
T ss_pred CCCCEEEEeecchh-hHHHHHHHHHHCCCCCCcC----cC----CCEEEecCCCCCH
Confidence 35677777765555 6678888888888766643 21 2369999999884
No 250
>PRK07480 putative aminotransferase; Validated
Probab=23.36 E-value=2.8e+02 Score=22.90 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
....+.|-+.||.+... ...|||. |++| ++++|++++.+.+.++|...
T Consensus 402 ~~~~~~~~~~Gll~~~~----------~~~l~~~-Ppl~---it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 402 TICRDHCFANGLIMRAV----------GDRMIIS-PPLV---ITHAEIDELVEKARKALDAT 449 (456)
T ss_pred HHHHHHHHHCCcEEeec----------CCEEEEE-CCCC---CCHHHHHHHHHHHHHHHHHH
Confidence 45666677899998532 1358987 6655 56899999999999999753
No 251
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=23.33 E-value=63 Score=19.37 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=19.9
Q ss_pred cCCCCCHHHHHHHHhhcCceeccCCCCCC
Q 034072 20 KNKGIDGSRVEKVLEAVHIAANKNTVPGD 48 (104)
Q Consensus 20 ~~~gi~g~~a~~~Le~~gI~vnkn~lP~d 48 (104)
...|++..+|++++++.| +|.+|..
T Consensus 17 ~~~GLs~~ev~~r~~~~G----~N~l~~~ 41 (69)
T PF00690_consen 17 SSQGLSSEEVEERRKKYG----PNELPEP 41 (69)
T ss_dssp TSSBBTHHHHHHHHHHHS----SSSTTTT
T ss_pred CCCCCCHHHHHHHHHhcc----ccccccc
Confidence 367999999999999988 4666544
No 252
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=23.29 E-value=1.2e+02 Score=25.23 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=48.2
Q ss_pred CeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHH
Q 034072 3 YELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 82 (104)
Q Consensus 3 ~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~ 82 (104)
+++-.-.+|+.++.+.+....++..+..+.|++.||.+= +++ .+-+||--. ...+.++.+.+-.-+.
T Consensus 297 i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm----~~~-----s~r~Rivlh----~Qvt~~~ve~~~~~~~ 363 (384)
T KOG1368|consen 297 IRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLM----GGA-----SRRIRIVLH----HQVTDEDVEYVKSVLS 363 (384)
T ss_pred eeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEe----ecc-----ccceEEEEE----EecCHHHHHHHHHHHH
Confidence 444444588999999999999999999999999999874 333 234777533 3456677776665554
Q ss_pred H
Q 034072 83 A 83 (104)
Q Consensus 83 ~ 83 (104)
+
T Consensus 364 k 364 (384)
T KOG1368|consen 364 K 364 (384)
T ss_pred H
Confidence 3
No 253
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.26 E-value=1.7e+02 Score=18.99 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=16.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHHH
Q 034072 65 TSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 65 T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
+.+|++++|++.+.++..+|=+
T Consensus 32 ~~~~Ls~~d~~~L~~L~~~A~r 53 (75)
T PRK09458 32 GSQGLSQEEQQRLAQLTEKAER 53 (75)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 3568999999888877665433
No 254
>PF14162 YozD: YozD-like protein
Probab=23.21 E-value=1.5e+02 Score=18.24 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.1
Q ss_pred hhHhhcCCCH--HHHHHHHHHHHHHHH
Q 034072 62 PALTSRGFVE--EDFAKVAYFFDAAVK 86 (104)
Q Consensus 62 ~a~T~RG~~e--~dm~~Ia~~i~~~l~ 86 (104)
.++..||+-+ ++..++|++.-+-|.
T Consensus 19 ~eL~kRGyvP~e~El~eiADItFeYll 45 (57)
T PF14162_consen 19 HELVKRGYVPTEEELEEIADITFEYLL 45 (57)
T ss_pred HHHHHccCCCcHHHHHHHHHHHHHHHH
Confidence 4678999854 778899998777554
No 255
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.13 E-value=1.1e+02 Score=20.42 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCCC-CceeeEeccCCCCCHHHHHHHHhhcCceeccCC
Q 034072 8 GGTE-NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT 44 (104)
Q Consensus 8 ggTd-~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~ 44 (104)
.||. +|.+.++ +.. +-.++++.|+..|..+|..+
T Consensus 46 ~gT~Sy~V~Fl~--~~~-s~eev~~ele~mga~in~ds 80 (88)
T COG4009 46 EGTSSYYVVFLE--EVE-SEEEVERELEDMGAEINRDS 80 (88)
T ss_pred cCceeEEEEEEe--ccC-CHHHHHHHHHHhCchhcccH
Confidence 4444 4555555 445 88999999999999999753
No 256
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=22.55 E-value=3.8e+02 Score=20.91 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=36.4
Q ss_pred CCceeeEeccCC-CCCHHHH-HHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 11 ENHLVLVNLKNK-GIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 11 d~Hlvlvdl~~~-gi~g~~a-~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
-.-.+|+++.+. +.+..+. ++.+++.||.+..-..-+ ......+||+.. ..++++++-.+.|.+
T Consensus 321 ~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~---~~~~~~iRi~~~------~~~~~l~~~l~rl~~ 386 (388)
T PRK07366 321 ATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFG---KSGEGYVRFALV------HDPDILEEAVERIAA 386 (388)
T ss_pred eeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhC---cCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence 345678887542 2234444 556688999886432211 111346999853 246777666665544
No 257
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.35 E-value=95 Score=18.54 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=17.5
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 64 LTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 64 ~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
=|.+|++ +|++..++-|.++.+.+
T Consensus 23 nTv~G~G-~Di~~~G~ai~~aA~~~ 46 (48)
T PRK10081 23 NTTRGVG-EDISDGGNAISGAATKA 46 (48)
T ss_pred hhhhhhh-HhHHHHHHHHHHHHHHh
Confidence 3778887 57888888887766543
No 258
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=22.29 E-value=1.8e+02 Score=17.24 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCC-CCCCCeeeEcchhHhhcCCC-HHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFV-EEDFAKVAYFFDA 83 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~-~~~~sglRlGT~a~T~RG~~-e~dm~~Ia~~i~~ 83 (104)
...+.+.|++.|+.|....-|.+.- .....=|-++-. .-+. ++|++++.+|+.+
T Consensus 7 ~~a~~~~L~~~g~~v~~~~~~~~~l~~~~~tll~i~~~----~~~~~~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 7 TYALYQLLEEQGVKVERWRKPYEALEADDGTLLVIGPD----LRLSEPEEAEALLEWVEA 62 (70)
T ss_pred HHHHHHHHHHCCCeeEEecccHHHhCCCCCEEEEEeCC----CCCCchHHHHHHHHHHHc
Confidence 4678899999999999776676632 111223566643 1255 4899999888753
No 259
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.98 E-value=1.7e+02 Score=23.31 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=22.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 65 TSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 65 T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
+.|-|+.+|+++|-+-+.++...+++.
T Consensus 138 ~p~~mt~~eI~~ii~~f~~aA~~a~~a 164 (338)
T cd02933 138 TPRALTTEEIPGIVADFRQAARNAIEA 164 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 458899999999998888887777664
No 260
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=21.88 E-value=79 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=25.0
Q ss_pred eeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 57 IRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 57 lRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
=|+|..+-+++|+...+|+.||..+..
T Consensus 30 ~~~Gi~~a~~~~~~~~~Lr~lak~i~~ 56 (222)
T COG4912 30 KRHGIRAAERKGIRKDDLRDLAKLIKK 56 (222)
T ss_pred cccCcHHHHHHhcchhHHHHHHHHhhh
Confidence 488999999999999999999999977
No 261
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=21.81 E-value=1.1e+02 Score=22.98 Aligned_cols=45 Identities=27% Similarity=0.498 Sum_probs=33.7
Q ss_pred eEecc-CCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHH
Q 034072 16 LVNLK-NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAK 76 (104)
Q Consensus 16 lvdl~-~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~ 76 (104)
|-++. ..+++..+..+.|...||... -||+| .-+.+|+.-+||..
T Consensus 134 W~~~~~g~~Lt~r~La~~L~~ygI~s~--------------~ir~~--~~~~KGY~r~~f~D 179 (184)
T PF12307_consen 134 WATWNRGKPLTPRQLAKLLKEYGIRSK--------------NIRFG--GSQAKGYRREDFAD 179 (184)
T ss_pred hhhcCCCCCCCHHHHHHHHHHCCCCCC--------------ceeeC--CCCCCceeHHHHHH
Confidence 34444 778999999999999999533 37774 34588999888864
No 262
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.80 E-value=53 Score=24.65 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=18.2
Q ss_pred eeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 57 IRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 57 lRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
+.+=++-+---.-++++++.||+++++
T Consensus 130 v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 130 VIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333344443334578999999999976
No 263
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=21.65 E-value=3.7e+02 Score=21.93 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 26 g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
.....+.|.+.||.+... .. + .+.|||+-+ ++ .+++|+++..+.|.++|...
T Consensus 393 ~~~l~~~~~~~Gvlv~~~----~~--~-~~~lrl~p~-l~---~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 393 TANICKEANKRGLLLLSA----GT--Y-GNVIRVLMP-LV---ITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred HHHHHHHHHHCCeEEeec----CC--C-CCEEEEECC-Cc---cCHHHHHHHHHHHHHHHHHH
Confidence 344555567899998543 10 0 246999844 33 56899999999999988644
No 264
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=21.63 E-value=88 Score=18.10 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHhhcCceeccC
Q 034072 23 GIDGSRVEKVLEAVHIAANKN 43 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI~vnkn 43 (104)
|.+-.+|.+.|++.|+.++..
T Consensus 8 g~~~~~a~~~l~~~g~~~~~~ 28 (63)
T PF03793_consen 8 GMTYDEAKSILEAAGLTVNVV 28 (63)
T ss_dssp TSBHHHHHHHHHHTT-EEEEE
T ss_pred CCcHHHHHHHHHHCCCEEEEE
Confidence 678999999999999965543
No 265
>PF02696 UPF0061: Uncharacterized ACR, YdiU/UPF0061 family; InterPro: IPR003846 The proteins in this entry are functionally uncharacterised.
Probab=21.49 E-value=1e+02 Score=26.34 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHhhcCceeccC---------------CCCCCC-CCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHH
Q 034072 28 RVEKVLEAVHIAANKN---------------TVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 28 ~a~~~Le~~gI~vnkn---------------~lP~d~-~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
-+++.|...||-..+. .-|+.- -...+|-||+||-+.-.+--..+.++++++...+
T Consensus 139 L~SEAm~aLGIPTTRaLalv~t~~~~v~r~~~ep~Avv~RvA~S~iR~GsFe~~~~~~~~~~l~~L~dy~i~ 210 (487)
T PF02696_consen 139 LCSEAMHALGIPTTRALALVTTGEEPVRRETPEPGAVVTRVAPSHIRFGSFEYFAYRGDPEGLRQLADYVIK 210 (487)
T ss_pred HHHHHHHhCCCCccceeEEEEcCCeeEEcCCCCCceEEEeccccceeeeeeehhhhcCCHHHHHHHHHHHHH
Confidence 4677788888864432 112221 2234688999999986544466778888877644
No 266
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.30 E-value=1.3e+02 Score=23.97 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 53 VPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 53 ~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
.+|.+......-..|.|+++|+++|-+-+.++...+++.
T Consensus 115 ~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~a 153 (343)
T cd04734 115 APSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAG 153 (343)
T ss_pred CCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 345544432233458899999999998888887777654
No 267
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=21.29 E-value=1.8e+02 Score=22.71 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHhhcCceeccCC-CCCC-CCCCCCCeeeEcchhHhhcC----CCHHHHHHHHHHHHHH
Q 034072 23 GIDGSRVEKVLEAVHIAANKNT-VPGD-VSAMVPGGIRMGTPALTSRG----FVEEDFAKVAYFFDAA 84 (104)
Q Consensus 23 gi~g~~a~~~Le~~gI~vnkn~-lP~d-~~~~~~sglRlGT~a~T~RG----~~e~dm~~Ia~~i~~~ 84 (104)
+-+|.....+-...|+.+|+|. .+++ ..+...+|-+..-...+-|| ..|-|-+.|+++|.+.
T Consensus 77 NPdG~~~~~R~n~~GVDLNRNfp~~~~~~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~~~~~~ 144 (273)
T cd03862 77 NPVGMALKTRSNGNGVDLMRNAPVDAEDKPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCRFVREL 144 (273)
T ss_pred CcCHHHhcccCCCCCcccCCCCCCCccccccccccCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4567766667677899999996 2322 12222345666655667777 4678888888988764
No 268
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=21.21 E-value=1.3e+02 Score=24.25 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.3
Q ss_pred CCCCeeeEcc---hhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 52 MVPGGIRMGT---PALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 52 ~~~sglRlGT---~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
..||.++... ...+-|.|+.+|+++|-+-+.++...+++.
T Consensus 120 ~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~a 162 (370)
T cd02929 120 LGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDA 162 (370)
T ss_pred cCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3455554332 223458899999999988888887777654
No 269
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=21.09 E-value=1.6e+02 Score=22.56 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=38.1
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEc--chhHhhcCCCHHHHHHHHHHHHHHH
Q 034072 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 85 (104)
Q Consensus 13 Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlG--T~a~T~RG~~e~dm~~Ia~~i~~~l 85 (104)
++|++-+.... --.++.+.+++.++.||...-|....-..|+=+|-| +.+++|-|.++.=-+.|-+.|.+.|
T Consensus 87 ~LViaATdD~~-vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l 160 (223)
T PRK05562 87 HLIVIATDDEK-LNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFL 160 (223)
T ss_pred cEEEECCCCHH-HHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 44444332222 234566677788999997666654333233333333 1234455666665555555555554
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=20.99 E-value=82 Score=15.88 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=11.6
Q ss_pred CeeeeCCCCCceeeEe
Q 034072 3 YELVSGGTENHLVLVN 18 (104)
Q Consensus 3 ~~vv~ggTd~Hlvlvd 18 (104)
-.+++++.|..+.++|
T Consensus 24 ~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 24 NFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred ccceeeCCCCEEEEEC
Confidence 4567788888877765
No 271
>PRK07483 hypothetical protein; Provisional
Probab=20.97 E-value=4.4e+02 Score=21.64 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTV 89 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~ 89 (104)
+.+.+.+.+.|+.+....-..+ .. ...-|||- |++| ++++|++++.+.+.++|...+
T Consensus 383 ~~~~~~~~~~Gll~~~~~~~~~-~~-~~~~l~~~-PpL~---it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 383 ARIKREAMARGLMVYPMGGTID-GV-RGDHVLLA-PPFI---ITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred HHHHHHHHHCCcEEEecCcccc-CC-CCCEEEEE-CCCC---CCHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999864310000 00 12459996 6666 489999999999999997543
No 272
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.92 E-value=1e+02 Score=24.58 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=24.8
Q ss_pred CeeeEcchhHhhcCCCHHHHHHHHHHHHHH
Q 034072 55 GGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (104)
Q Consensus 55 sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~ 84 (104)
=++||+..+.--.|++.+|+.++++.+.++
T Consensus 211 v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~ 240 (343)
T cd04734 211 VGIRISGDEDTEGGLSPDEALEIAARLAAE 240 (343)
T ss_pred EEEEeehhhccCCCCCHHHHHHHHHHHHhc
Confidence 479999887777789999999988888664
No 273
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.81 E-value=2.3e+02 Score=17.74 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=33.7
Q ss_pred CHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 25 ~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
+..+..+.||-+++..+ +|||+=-..++ +++|+..++..+.+-|+..
T Consensus 5 sPv~LR~~lE~A~~La~-------------~GIRFVpiPv~----~dee~~~L~s~~~~kLe~m 51 (61)
T PF07131_consen 5 SPVDLRKALEMAHSLAH-------------IGIRFVPIPVV----TDEEFHTLSSQLSQKLERM 51 (61)
T ss_pred cHHHHHHHHHHHHHHHH-------------cCceeeccccc----cHHHHHHHHHHHHHHHHHH
Confidence 44556677777776554 67777655554 5699999999998888764
No 274
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=20.71 E-value=2.8e+02 Score=21.36 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=24.3
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 62 ~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
|.-...-++++|.+.|.+.|.++|+.+.+.
T Consensus 187 P~~~~~~Ls~~~~~~L~~~~~~vl~~ai~~ 216 (274)
T PRK01103 187 PERPAGSLSRAEAERLVDAIKAVLAEAIEQ 216 (274)
T ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 444456688999999999999999888774
No 275
>PF11419 DUF3194: Protein of unknown function (DUF3194); InterPro: IPR024502 This family of proteins has no known function however the structure has been determined. The protein consists of two alpha-helices packed on the same side of a central beta-hairpin [].; PDB: 1PU1_A.
Probab=20.62 E-value=1.4e+02 Score=19.98 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=16.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHH
Q 034072 64 LTSRGFVEEDFAKVAYFFDAAVKL 87 (104)
Q Consensus 64 ~T~RG~~e~dm~~Ia~~i~~~l~~ 87 (104)
|+-|-++++|..+|+++.++++..
T Consensus 1 ~~l~kLs~~el~eI~e~a~~~~e~ 24 (87)
T PF11419_consen 1 IGLPKLSEEELDEISEFAAEAAEG 24 (87)
T ss_dssp ------SHHHHHHHHHHHHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHHHHH
Confidence 345778999999999999998763
No 276
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=20.61 E-value=68 Score=23.60 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=19.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034072 67 RGFVEEDFAKVAYFFDAAVKLTVKIKSETQ 96 (104)
Q Consensus 67 RG~~e~dm~~Ia~~i~~~l~~~~~~~~~~~ 96 (104)
|-++++|.+.||.+|-. .++.+.++-|
T Consensus 131 ~~LsdeEL~aVAaYIl~---q~~~~~~~wg 157 (163)
T CHL00133 131 RSLTDEDLYAIAGHILL---QPKIVSEKWG 157 (163)
T ss_pred CCCCHHHHHHHHHHHHh---cccccccccC
Confidence 67999999999999843 3444444443
No 277
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=20.53 E-value=1.7e+02 Score=19.68 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCC----CCCCeeeE---------cchhHhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSA----MVPGGIRM---------GTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~----~~~sglRl---------GT~a~T~RG~~e~dm~~Ia~~i~~~l~~~~~~~~ 93 (104)
..+-+.|++.|.+.-. .-|.|.-. ..+.|..+ -..+-...+++++|.+.+-+++.++..+..++++
T Consensus 64 t~~v~~Le~~GlV~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~l~~~l~~~~~ 142 (144)
T PRK03573 64 VRTLDQLEEKGLISRQ-TCASDRRAKRIKLTEKAEPLISEVEAVINKTRAEILHGISAEEIEQLITLIAKLEKNIIELQS 142 (144)
T ss_pred HHHHHHHHHCCCEeee-cCCCCcCeeeeEEChHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556778888877653 35666421 11112111 0112235688888888888888887776666543
No 278
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=20.46 E-value=93 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=17.7
Q ss_pred hhHhhcCCCHHHHHHHHHHHHH
Q 034072 62 PALTSRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 62 ~a~T~RG~~e~dm~~Ia~~i~~ 83 (104)
-.---.+++++||..||.+++.
T Consensus 78 M~~~a~~LsD~Di~~lAa~~a~ 99 (121)
T COG2863 78 MNAIASGLSDEDIADLAAYYAA 99 (121)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 4445678999999999999864
No 279
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=1.1e+02 Score=19.62 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.8
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 034072 66 SRGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 66 ~RG~~e~dm~~Ia~~i~~ 83 (104)
.-.|++.||..||+-+.+
T Consensus 51 kenfSpsEmqaiA~eL~r 68 (71)
T COG4840 51 KENFSPSEMQAIADELGR 68 (71)
T ss_pred hccCCHHHHHHHHHHHHH
Confidence 456899999999988766
No 280
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=20.35 E-value=3.2e+02 Score=21.37 Aligned_cols=77 Identities=6% Similarity=0.070 Sum_probs=47.1
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccC-CC-CCC-CCCCC--CCeeeEcchhHhhcCCCHHHHHHHHHHH-HHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKN-TV-PGD-VSAMV--PGGIRMGTPALTSRGFVEEDFAKVAYFF-DAAVKL 87 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn-~l-P~d-~~~~~--~sglRlGT~a~T~RG~~e~dm~~Ia~~i-~~~l~~ 87 (104)
+-+||| +.. +-..+++..+..++.+--- -+ .-+ ..-+. .+.+=|||.+++.-.+.++.++++++.. .+.+-.
T Consensus 55 lHvVDL-g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~Ivv 132 (253)
T TIGR02129 55 CHVIML-GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIV 132 (253)
T ss_pred EEEEEC-CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEE
Confidence 347898 445 7777788887765432210 00 111 11111 2456689999988888899999999888 455555
Q ss_pred HHHHh
Q 034072 88 TVKIK 92 (104)
Q Consensus 88 ~~~~~ 92 (104)
+.+++
T Consensus 133 siD~k 137 (253)
T TIGR02129 133 DLSCR 137 (253)
T ss_pred EEEEE
Confidence 55554
No 281
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=20.26 E-value=2.5e+02 Score=26.21 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCeeeeCCCCCceeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHH
Q 034072 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (104)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i 81 (104)
|+++++. .-.+.|.+.+. +..++.++|++.||.+.+.. ...||+..-+.|++ +|+..+.+.+
T Consensus 402 G~~~~~~-~~f~~vt~~~~----~~~~v~~~L~~~gI~l~~~~---------~~~lrvs~~e~~T~----edId~L~~~l 463 (993)
T PLN02414 402 GFQVQSL-PFFDTVKVKCS----DADAIADAAAKVGINLRVVD---------ANTVTVSFDETTTL----EDVDKLFKVF 463 (993)
T ss_pred CCccCCC-CCcCeEEEecC----CHHHHHHHHHHCCCeeEEec---------CCeEEEEeeccCCH----HHHHHHHHHH
Confidence 5555543 33456666652 45888999999999666442 13499999998876 8999988888
Q ss_pred HH
Q 034072 82 DA 83 (104)
Q Consensus 82 ~~ 83 (104)
..
T Consensus 464 ~~ 465 (993)
T PLN02414 464 AG 465 (993)
T ss_pred cc
Confidence 53
No 282
>PRK09148 aminotransferase; Validated
Probab=20.22 E-value=4.5e+02 Score=20.86 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=41.2
Q ss_pred CceeeEeccCC--CCCHHHH-HHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHHHH
Q 034072 12 NHLVLVNLKNK--GIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLT 88 (104)
Q Consensus 12 ~Hlvlvdl~~~--gi~g~~a-~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~~~ 88 (104)
.-.+|+++.+. +++..+. +..|++.||.|-.-...+.. ....+||+.. ..++++.+.-+.|.+++...
T Consensus 321 g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~---~~~~~Ri~~~------~~~~~l~~al~~l~~~l~~~ 391 (405)
T PRK09148 321 SMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEH---GDGYVRIALV------ENEQRIRQAARNIKRFLSSA 391 (405)
T ss_pred eEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCC---CCCeEEEEec------CCHHHHHHHHHHHHHHHHHH
Confidence 34578887542 1233444 45567899988743221111 1356999862 35677777777777777644
Q ss_pred HH
Q 034072 89 VK 90 (104)
Q Consensus 89 ~~ 90 (104)
.|
T Consensus 392 ~~ 393 (405)
T PRK09148 392 DE 393 (405)
T ss_pred HH
Confidence 33
No 283
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=20.21 E-value=74 Score=13.97 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=6.8
Q ss_pred eeeCCCCCceeeE
Q 034072 5 LVSGGTENHLVLV 17 (104)
Q Consensus 5 vv~ggTd~Hlvlv 17 (104)
+++++.|++..++
T Consensus 27 ~~~~~~d~~~~~~ 39 (40)
T smart00320 27 LASASDDGTIKLW 39 (40)
T ss_pred EEEecCCCeEEEc
Confidence 4455666654443
No 284
>PRK07481 hypothetical protein; Provisional
Probab=20.15 E-value=2.9e+02 Score=22.72 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 27 ~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
..+.+.|.+.|+.+... ...+||. |++| ++++|++++.+.+.++|.
T Consensus 399 ~~~~~~~~~~Gvl~~~~----------g~~i~l~-Ppl~---it~~eid~~~~~l~~~l~ 444 (449)
T PRK07481 399 NAVADVARENGVLVRPS----------GTKIILS-PPLV---IQREDVDRIVDALDAGLS 444 (449)
T ss_pred HHHHHHHHhCCeEEEec----------CCEEEEE-CCCC---CCHHHHHHHHHHHHHHHH
Confidence 45566677889988532 1247885 5554 468999999999988886
No 285
>PRK13619 psbV cytochrome c-550; Provisional
Probab=20.14 E-value=80 Score=23.36 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.2
Q ss_pred cCCCHHHHHHHHHHHHH
Q 034072 67 RGFVEEDFAKVAYFFDA 83 (104)
Q Consensus 67 RG~~e~dm~~Ia~~i~~ 83 (104)
|.++++|.+.||.+|-.
T Consensus 130 r~LtdedL~~iAg~IL~ 146 (160)
T PRK13619 130 RNFTEDDLYDVAGYMLV 146 (160)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 89999999999999843
No 286
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=20.11 E-value=1.3e+02 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=22.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 034072 64 LTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (104)
Q Consensus 64 ~T~RG~~e~dm~~Ia~~i~~~l~~~~~~ 91 (104)
-+-|.|+++|+++|.+-..++...+++.
T Consensus 127 ~~p~~mt~eeI~~ii~~f~~aA~~a~~a 154 (337)
T PRK13523 127 KTPVEMTKEQIKETVLAFKQAAVRAKEA 154 (337)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3558999999999998888887777664
No 287
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=20.04 E-value=3.2e+02 Score=22.02 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=39.6
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeccCCCCCCCCCCCCCeeeEcchhHhhcCCCHHHHHHHHHHHHHHHH
Q 034072 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (104)
Q Consensus 14 lvlvdl~~~gi~g~~a~~~Le~~gI~vnkn~lP~d~~~~~~sglRlGT~a~T~RG~~e~dm~~Ia~~i~~~l~ 86 (104)
++++.+.+. ....+..+.|.+.||.+.... |+ ...|||..+.. .+++|++++-+.+.++|.
T Consensus 351 ~~~l~l~~~-~~~~~~~~~~~~~Gv~v~~~~-~~------~~~lr~~p~l~----~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 351 MQGIECGDG-DLAGKIAKAAFENGLIIETSG-PN------DEVIKLLPPLT----IDEETLQQGLDILEQAVE 411 (412)
T ss_pred EEEEEecCh-HHHHHHHHHHHHCCCEEeccC-CC------CCEEEEECCCC----CCHHHHHHHHHHHHHHHh
Confidence 345555321 134566777888999986431 11 24699974432 677999999999988874
No 288
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=20.03 E-value=1.8e+02 Score=19.83 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=20.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 034072 64 LTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93 (104)
Q Consensus 64 ~T~RG~~e~dm~~Ia~~i~~~l~~~~~~~~ 93 (104)
+-.||+.+++..+++.-+.+-|....++.+
T Consensus 4 lr~rGi~~e~v~~~S~~LideLa~i~~~p~ 33 (108)
T PF08921_consen 4 LRFRGIEEEQVQELSKELIDELAEICGCPR 33 (108)
T ss_dssp EEEESS-HHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEecCCHHHHHHHhHHHHHHHHHHHCCCc
Confidence 446999999999999887776665555533
Done!