RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 034072
(104 letters)
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism;
HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP:
c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A*
1bj4_A* 1eji_A*
Length = 483
Score = 167 bits (424), Expect = 2e-51
Identities = 57/94 (60%), Positives = 77/94 (81%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+GT
Sbjct: 345 GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGT 404
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSRG +E+DF KVA+F ++LTV+I+ +T
Sbjct: 405 PALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 438
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural
genomics consortium, SGC; 2.04A {Homo sapiens} SCOP:
c.67.1.4 PDB: 3ou5_A
Length = 490
Score = 166 bits (422), Expect = 5e-51
Identities = 58/94 (61%), Positives = 74/94 (78%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 355 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 414
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSR F E+DF +V F D V + +++KS+T
Sbjct: 415 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT 448
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 119 bits (302), Expect = 4e-34
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
GY +V+GGT+NHL LV+L+ KG+ G E+ L+AV I NKN +P D V GIR+G
Sbjct: 301 GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIG 360
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF E+ VA D A+
Sbjct: 361 TPAITTRGFTPEEMPLVAELIDRALL 386
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A*
2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A*
2vgv_A* 2vgw_A* ...
Length = 405
Score = 119 bits (301), Expect = 6e-34
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
T A+T+RGF E+ ++A +K
Sbjct: 360 TAAVTTRGFGLEEMDEIAAIIGLVLK 385
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 119 bits (300), Expect = 1e-33
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G +VSGGT+ HLVLV+L++ +DG E +L V I N+N VP D MV G+R+G
Sbjct: 327 GVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIG 386
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPAL +RGF + +F +VA A+
Sbjct: 387 TPALATRGFGDTEFTEVADIIATALA 412
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 118 bits (299), Expect = 1e-33
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
GY++VSGGTENHL L++L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 309 GYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIG 368
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
+PA+T RGF E + ++A + +
Sbjct: 369 SPAVTRRGFKEAEVKELAGWMCDVLD 394
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 118 bits (298), Expect = 2e-33
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
++LVS GT+NHLVL++ ++ G + L I ANKNTVPG+ S + G+R+G
Sbjct: 302 KFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPALT+RGF E++ V+ + +
Sbjct: 362 TPALTARGFKEKEMEIVSNYIADILD 387
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 118 bits (297), Expect = 3e-33
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G +LV+GGT+NHL+LV+L+ KG+ G++VE+ LE I NKN +P D + GIR+G
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA T+RGF +F +V +
Sbjct: 370 TPAGTTRGFGAAEFREVGRLILEVFE 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.065
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 33/102 (32%)
Query: 10 TENH---LVLVN------LKNKGID-------G-S--------------RVEKVLEAVHI 38
T+ L L+ LK+KG+ G S +E ++E V
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 39 --AANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78
+ VP D G+ P + F +E V
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Score = 26.9 bits (59), Expect = 1.4
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 6 VSGGTENHL-----VLVNLKNKGIDGSRVEKVLEAVHI 38
V+ G L VL +K + ID + ++ +++ +
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKID---IIELQKSLSL 1888
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer,
structural genomics, PSI, structure initiative; NMR
{Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Length = 76
Score = 26.3 bits (58), Expect = 0.97
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS-----RGFVEEDFAKV 77
RVEK+++ + K V D++ M G T + R V ++F K
Sbjct: 11 RVEKIIQDLLDVLVKEEVTPDLALMCLG--NAVTNIIAQVPESKRVAVVDNFTKA 63
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 26.9 bits (60), Expect = 1.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 32 VLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
VL + + + V GG+R GT
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGT 416
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 26.9 bits (60), Expect = 1.5
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85
G K+ A +A D+ + I + +++ED++ AY + +
Sbjct: 474 GKGAAKLRVAGVVAPTLPR--EDLEKI----IA----HFLIQQYLKEDYSFTAYATISYL 523
Query: 86 KLTVKIKSETQGSYQCFLP 104
K+ K ++ +
Sbjct: 524 KIGPKANLLNNEAHAITMQ 542
>4fyl_A Ribosome hibernation protein YHBH;
beta-alpha-beta-BETA-beta-alpha secondary structure
fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio
cholerae}
Length = 95
Score = 25.6 bits (57), Expect = 2.0
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
T ++ + +V F K+ FFD + V ++ E
Sbjct: 13 TDSM--QDYVHSKFDKLERFFDHINHVQVILRVE 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.3
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 18/42 (42%)
Query: 31 KVLEA-VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVE 71
K L+A + + A SA PAL + +E
Sbjct: 23 KKLQASLKLYA-----DD--SA----------PALAIKATME 47
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha,
northeast structural GEN consortium, NESG, structural
genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1
PDB: 2qti_A
Length = 80
Score = 25.2 bits (55), Expect = 2.5
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
+VE ++ + + K+ P D+S M G + SR V E FAK
Sbjct: 11 QVESLIAEILVVLEKHKAPTDLSLMALGNCVTHLLERKVPSESRQAVAEQFAKA 64
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics,
PSI-2, protein structure initiative; NMR {Haemophilus
influenzae} SCOP: a.284.1.1
Length = 80
Score = 25.2 bits (55), Expect = 2.6
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
++ ++ + K+ P D+S + G + + T + + F+
Sbjct: 11 QLSAIVNDMIAVLEKHKAPVDLSLIALGNMASNLLTTSVPQTQCEALAQAFSNS 64
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural
genomics, PSI-2, protein structure initiative; NMR
{Vibrio parahaemolyticus} SCOP: a.284.1.1
Length = 83
Score = 25.2 bits (55), Expect = 2.6
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
+VEK+L V + K+ +++ M+ G + A + R + E FA+
Sbjct: 11 QVEKILAEVALVLEKHAASPELTLMIAGNIATNVLNQRVAASQRKLIAEKFAQA 64
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural
genomics, PSI-2, protein initiative, northeast
structural genomics consortium, NESG; NMR {Escherichia
coli} SCOP: a.284.1.1
Length = 83
Score = 25.2 bits (55), Expect = 2.7
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
+VE++L + K+ P D+S MV G + + A R + FA+
Sbjct: 11 QVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARA 64
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 25.4 bits (56), Expect = 3.5
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 15 VLVNLKNKGIDGSRVEKVLEAVHIA 39
V + + KG+D ++L+A+ +
Sbjct: 94 VYLYEELKGLDRDLFLEMLKALKLG 118
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome
hibernation factor, YHBH, protein E, stress respons
stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X
2rql_A
Length = 101
Score = 24.8 bits (55), Expect = 3.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
T AL R FV FAK+ +FD ++ V +K E
Sbjct: 13 TEAL--REFVTAKFAKLEQYFDRINQVYVVLKVE 44
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 24.8 bits (55), Expect = 4.5
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 27/88 (30%)
Query: 1 MGYELV-SGGTENHLVLVNLKNKGIDGSRVEKVLEAV----------HIAANK-----NT 44
G++L + T + L + + V + I N
Sbjct: 49 EGFKLFATEATSDWL-----NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINL 103
Query: 45 VPGDVSAMVPG-GIR-----MGTPALTS 66
+ + IR G P LT+
Sbjct: 104 PNNNTKFVHDNYVIRRTAVDSGIPLLTN 131
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome,
solution structure, ribosome, structure 2 function
project, S2F; NMR {Haemophilus influenzae} SCOP:
d.204.1.1
Length = 107
Score = 24.5 bits (54), Expect = 4.8
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
TPA+ R +EE AK+ + + +
Sbjct: 13 TPAI--REHLEERLAKLGKWQTQLISPHFVLNKV 44
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 25.0 bits (54), Expect = 5.6
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 63 ALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCFL 103
+ SR ++ + + L I+ +T G + L
Sbjct: 624 IMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGDFLKAL 664
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54
modulation protein family, structural genomics; 2.64A
{Thermus thermophilus} SCOP: d.204.1.1
Length = 105
Score = 24.5 bits (54), Expect = 5.6
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
T A+ R +VE+ A++ + D + V +
Sbjct: 14 TDAI--RDYVEKKLARLDRYQDGELMAKVVLSLA 45
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 24.9 bits (53), Expect = 6.1
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTP 62
G+ R+ + + TVP S G++ G
Sbjct: 130 GVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVD 169
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 24.5 bits (54), Expect = 6.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
TPA+ R V + AK+ + + + + E
Sbjct: 13 TPAI--RQHVADRLAKLEKWQTHLINPHIILSKE 44
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding;
2.45A {Coxiella burnetii}
Length = 96
Score = 24.0 bits (53), Expect = 6.5
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
+PAL R E+ ++ D + +
Sbjct: 13 SPAL--RELTEKKLHRIQPCRDEISNIHIIFHIN 44
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 24.9 bits (54), Expect = 7.1
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 64 LTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCFL 103
L SR ++ K + L I + G Y+ L
Sbjct: 270 LVSRSEIDLANIKETFQAMYGKSLYEFIADDCSGDYKDLL 309
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 24.9 bits (54), Expect = 7.1
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 64 LTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCFL 103
+ SR V+ + + L I+ +T+G YQ L
Sbjct: 261 MVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKAL 300
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1,
phenylalanyl-tRNA SYNT beta subunit, structural
genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas
gingivalis}
Length = 213
Score = 24.1 bits (53), Expect = 9.0
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 22 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGG 56
K + VE+VL V I T+ + +
Sbjct: 141 KAV----VEQVLCRVGIETGAYTLKTADNDLYASA 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,555,663
Number of extensions: 85679
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 43
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)