RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 034072
(104 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 116 bits (292), Expect = 6e-33
Identities = 57/94 (60%), Positives = 77/94 (81%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+GT
Sbjct: 332 GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGT 391
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSRG +E+DF KVA+F ++LTV+I+ +T
Sbjct: 392 PALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 425
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 111 bits (278), Expect = 4e-31
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
GY++VSGGT+NHL LV+L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 305 GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVG 364
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T RGF E + ++A + +
Sbjct: 365 TPAITRRGFKEAEAKELAGWMCDVLD 390
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 110 bits (275), Expect = 7e-31
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRM 59
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRI 358
Query: 60 GTPALTSRGFVEEDFAKVAYFFDAAVK 86
GT A+T+RGF E+ ++A +K
Sbjct: 359 GTAAVTTRGFGLEEMDEIAAIIGLVLK 385
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 110 bits (277), Expect = 8e-31
Identities = 58/94 (61%), Positives = 74/94 (78%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 328 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 387
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET 95
PALTSR F E+DF +V F D V + +++KS+T
Sbjct: 388 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT 421
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 44.1 bits (103), Expect = 5e-07
Identities = 9/106 (8%), Positives = 21/106 (19%), Gaps = 13/106 (12%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGID--------GSRVEKVLEAVHIAANKNTVPGDVSAM 52
+V H V+ + ++ + I A +
Sbjct: 342 EEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDP 401
Query: 53 VPGGIRMGTP-----ALTSRGFVEEDFAKVAYFFDAAVKLTVKIKS 93
G + + + + F + IK
Sbjct: 402 KTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKG 447
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 37.6 bits (86), Expect = 8e-05
Identities = 6/92 (6%), Positives = 23/92 (25%), Gaps = 12/92 (13%)
Query: 10 TENHLVLVNLKNKGI-DGSRVEKVLEAVHIAANKNTVP--------GDVSAMVPGGIRMG 60
+ ++ + + + + + A + G+ +R+
Sbjct: 356 VDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLT 415
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIK 92
R + + +A + +K
Sbjct: 416 IAR---RVYTNDHMDYIADALIGLKEKFATLK 444
>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex
aeolicus [TaxId: 63363]}
Length = 141
Score = 26.1 bits (57), Expect = 0.74
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 15 VLVNLKNKGIDGSRVEKVLEAVHIAANKNTV 45
VLV LK + + ++EK E A N V
Sbjct: 4 VLVKLKKRKVRKDKIEKWAELALSALGLNNV 34
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611
{Colwellia psychrerythraea [TaxId: 28229]}
Length = 62
Score = 23.1 bits (50), Expect = 3.4
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS-----RGFVEEDFAKV 77
RVEK+++ + K V D++ M G T + R V ++F K
Sbjct: 5 RVEKIIQDLLDVLVKEEVTPDLALMCLGN--AVTNIIAQVPESKRVAVVDNFTKA 57
>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major
capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
Length = 103
Score = 23.4 bits (50), Expect = 4.3
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 36 VHIAANKNTVPGDVSAMVPGGIRMGTPALT 65
V I A + +A GI TPALT
Sbjct: 1 VRIFAGNDPA---HTATGSSGISSPTPALT 27
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 23.1 bits (50), Expect = 4.9
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 64 LTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCFL 103
LT R + K AY + L +K G + +
Sbjct: 29 LTKRNNAQRQQIKAAYLQETGKPLDETLKKALTGHLEEVV 68
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA
homologue) {Thermus thermophilus [TaxId: 274]}
Length = 95
Score = 23.2 bits (50), Expect = 5.9
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
T A+ R +VE+ A++ + D + V +
Sbjct: 14 TDAI--RDYVEKKLARLDRYQDGELMAKVVLSLA 45
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA
component ManP, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 103
Score = 23.1 bits (50), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 83 AAVKLTVKIKSETQGS 98
AA +L V IK ETQG
Sbjct: 25 AADRLGVSIKVETQGG 40
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
component FruA, middle domain {Bacillus subtilis
[TaxId: 1423]}
Length = 103
Score = 23.1 bits (50), Expect = 6.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 83 AAVKLTVKIKSETQGS 98
A +L V+IK ET GS
Sbjct: 25 KAKELGVEIKVETNGS 40
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId:
1061]}
Length = 654
Score = 23.7 bits (50), Expect = 6.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 51 AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83
A+ G P + +RG VE A A+ +
Sbjct: 9 ALAADSRFEGGPVIWARGDVETALAGAAHLAEG 41
>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 318
Score = 23.4 bits (50), Expect = 6.8
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 63 ALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCFL 103
+ SR ++ + + + A L IK +T G Y+ L
Sbjct: 269 VIVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKAL 309
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840
{Haemophilus influenzae [TaxId: 727]}
Length = 72
Score = 22.4 bits (48), Expect = 7.8
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
++ ++ + K+ P D+S + G + + T + + F+
Sbjct: 11 QLSAIVNDMIAVLEKHKAPVDLSLIALGNMASNLLTTSVPQTQCEALAQAFSNS 64
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA
homologue) {Escherichia coli [TaxId: 562]}
Length = 112
Score = 22.9 bits (49), Expect = 8.2
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSE 94
TPA+ R V + AK+ + + + + E
Sbjct: 12 TPAI--RQHVADRLAKLEKWQTHLINPHIILSKE 43
>d1avca2 a.65.1.1 (A:351-671) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 321
Score = 23.0 bits (49), Expect = 9.9
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 64 LTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGSYQCFL 103
+ SR ++ + + L I+ +T G + L
Sbjct: 276 MVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGHFLKAL 315
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,855
Number of extensions: 13842
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 24
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)